sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | anfo 0.98-7 (mipsel) Tue, 26 Mar 2019 08:51:31 +0000 | +==============================================================================+ Package: anfo Version: 0.98-7 Source Version: 0.98-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-9e99a35d-5921-4602-a958-241809076131' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://debian.oregonstate.edu/debian unstable InRelease Get:2 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [8010 kB] Fetched 8010 kB in 2s (4371 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'anfo' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/anfo.git Please use: git clone https://salsa.debian.org/med-team/anfo.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 472 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main anfo 0.98-7 (dsc) [2139 B] Get:2 http://debian.oregonstate.edu/debian unstable/main anfo 0.98-7 (tar) [462 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main anfo 0.98-7 (diff) [7556 B] Fetched 472 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/anfo-TnZ21S/anfo-0.98' with '<>' I: NOTICE: Log filtering will replace 'build/anfo-TnZ21S' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-hlPPts/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-hlPPts/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hlPPts/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-hlPPts/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hlPPts/apt_archive ./ Sources [363 B] Get:5 copy:/<>/resolver-hlPPts/apt_archive ./ Packages [453 B] Fetched 1773 B in 0s (101 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-mipsel-linux-gnu cpp-8-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel dpkg-cross file g++-8-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-8-cross-base gcc-8-mipsel-linux-gnu gcc-8-mipsel-linux-gnu-base gcc-mipsel-linux-gnu libatomic1-mipsel-cross libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mipsel-cross libgcc1-mipsel-cross libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mipsel-cross libstdc++6-mipsel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mipsel-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-mipsel-linux-gnu gcc-8-doc libstdc++6-8-dbg-mipsel-cross gcc-8-multilib-mipsel-linux-gnu libgcc1-dbg-mipsel-cross libgomp1-dbg-mipsel-cross libitm1-dbg-mipsel-cross libatomic1-dbg-mipsel-cross libasan5-dbg-mipsel-cross liblsan0-dbg-mipsel-cross libtsan0-dbg-mipsel-cross libubsan1-dbg-mipsel-cross libmpx2-dbg-mipsel-cross libquadmath0-dbg-mipsel-cross manpages-dev autoconf automake libtool flex bison gdb-mipsel-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-mipsel-linux-gnu cpp-8-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel dpkg-cross file g++-8-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-8-cross-base gcc-8-mipsel-linux-gnu gcc-8-mipsel-linux-gnu-base gcc-mipsel-linux-gnu libatomic1-mipsel-cross libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mipsel-cross libgcc1-mipsel-cross libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mipsel-cross libstdc++6-mipsel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mipsel-cross sbuild-build-depends-core-dummy:mipsel sensible-utils ucf 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After this operation, 146 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hlPPts/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.31.1-16 [2487 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mipsel-linux-gnu-base amd64 8.3.0-2cross1 [190 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-mipsel-linux-gnu amd64 8.3.0-2cross1 [6282 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-2cross1 [185 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.28-7cross1 [1229 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mipsel-cross all 1:8.3.0-2cross1 [46.1 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 8.3.0-2cross1 [69.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 8.3.0-2cross1 [6688 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-mipsel-cross all 8.3.0-2cross1 [211 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mipsel-linux-gnu amd64 8.3.0-2cross1 [6689 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:8.3.0-1 [1452 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 8.3.0-2cross1 [311 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 4.19.20-1cross1 [1223 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.28-7cross1 [2317 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-mipsel-cross all 8.3.0-2cross1 [1535 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-mipsel-linux-gnu amd64 8.3.0-2cross1 [6855 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:8.3.0-1 [1172 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.6 [6564 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.0 MB in 1s (65.0 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11936 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../38-libdebian-dpkgcross-perl_2.6.15-2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../39-dpkg-cross_2.6.15-2_all.deb ... Unpacking dpkg-cross (2.6.15-2) ... Selecting previously unselected package crossbuild-essential-mipsel. Preparing to unpack .../40-crossbuild-essential-mipsel_12.6_all.deb ... Unpacking crossbuild-essential-mipsel (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:mipsel. Preparing to unpack .../41-sbuild-build-depends-core-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-core-dummy:mipsel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-2cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libc6-mipsel-cross (2.28-7cross1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libatomic1-mipsel-cross (8.3.0-2cross1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-2) ... Setting up libgcc1-mipsel-cross (1:8.3.0-2cross1) ... Setting up binutils-mipsel-linux-gnu (2.31.1-16) ... Setting up libgomp1-mipsel-cross (8.3.0-2cross1) ... Setting up gcc-8-mipsel-linux-gnu-base:amd64 (8.3.0-2cross1) ... Setting up linux-libc-dev-mipsel-cross (4.19.20-1cross1) ... Setting up sensible-utils (0.0.12) ... Setting up cpp-8-mipsel-linux-gnu (8.3.0-2cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgcc-8-dev-mipsel-cross (8.3.0-2cross1) ... Setting up libc6-dev-mipsel-cross (2.28-7cross1) ... Setting up libstdc++6-mipsel-cross (8.3.0-2cross1) ... Setting up cpp-mipsel-linux-gnu (4:8.3.0-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++-8-dev-mipsel-cross (8.3.0-2cross1) ... Setting up gcc-8-mipsel-linux-gnu (8.3.0-2cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-8-mipsel-linux-gnu (8.3.0-2cross1) ... Setting up g++-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-mipsel (12.6) ... Setting up sbuild-build-depends-core-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-hlPPts/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-hlPPts/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hlPPts/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-hlPPts/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hlPPts/apt_archive ./ Sources [482 B] Get:5 copy:/<>/resolver-hlPPts/apt_archive ./ Packages [571 B] Fetched 2016 B in 0s (118 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:mipsel 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-hlPPts/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:mipsel. (Reading database ... 15107 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-essential-dummy:mipsel (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:mipsel (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs (>= 0.77) Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs (>= 0.77) dpkg-deb: building package 'sbuild-build-depends-anfo-dummy' in '/<>/resolver-hlPPts/apt_archive/sbuild-build-depends-anfo-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-anfo-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-hlPPts/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hlPPts/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-hlPPts/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hlPPts/apt_archive ./ Sources [691 B] Get:5 copy:/<>/resolver-hlPPts/apt_archive ./ Packages [773 B] Fetched 2427 B in 0s (131 kB/s) Reading package lists... Reading package lists... Install anfo build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mipsel gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libbsd0 libbsd0:mipsel libbz2-1.0:mipsel libbz2-dev:mipsel libc6:mipsel libc6-dev:mipsel libcroco3 libelf-dev:mipsel libelf1 libelf1:mipsel libelk0:mipsel libelk0-dev:mipsel libfile-stripnondeterminism-perl libgcc-8-dev:mipsel libgcc1:mipsel libglib2.0-0 libgomp1:mipsel libice-dev:mipsel libice6:mipsel libncurses6 libpipeline1 libpopt-dev:mipsel libpopt0:mipsel libprotobuf-dev:mipsel libprotobuf-lite17:mipsel libprotobuf17 libprotobuf17:mipsel libprotoc17 libpthread-stubs0-dev libpthread-stubs0-dev:mipsel libsigsegv2 libsm-dev:mipsel libsm6:mipsel libstdc++-8-dev:mipsel libstdc++6:mipsel libtool libuchardet0 libuuid1:mipsel libx11-6 libx11-6:mipsel libx11-data libx11-dev libx11-dev:mipsel libxau-dev libxau-dev:mipsel libxau6 libxau6:mipsel libxcb1 libxcb1:mipsel libxcb1-dev libxcb1-dev:mipsel libxdmcp-dev libxdmcp-dev:mipsel libxdmcp6 libxdmcp6:mipsel libxext-dev:mipsel libxext6:mipsel libxmu-dev:mipsel libxmu-headers libxmu6:mipsel libxt-dev:mipsel libxt6:mipsel linux-libc-dev:mipsel lsb-base m4 man-db pkg-config po-debconf protobuf-compiler x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel manpages-dev:mipsel libice-doc:mipsel libsm-doc:mipsel libstdc++-8-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libx11-doc:mipsel libxcb-doc libxcb-doc:mipsel libxext-doc:mipsel libxt-doc:mipsel m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:mipsel libidn2-0:mipsel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev uuid-runtime:mipsel libmail-sendmail-perl libprotobuf-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mipsel gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libbsd0 libbsd0:mipsel libbz2-1.0:mipsel libbz2-dev:mipsel libc6:mipsel libc6-dev:mipsel libcroco3 libelf-dev:mipsel libelf1 libelf1:mipsel libelk0:mipsel libelk0-dev:mipsel libfile-stripnondeterminism-perl libgcc-8-dev:mipsel libgcc1:mipsel libglib2.0-0 libgomp1:mipsel libice-dev:mipsel libice6:mipsel libncurses6 libpipeline1 libpopt-dev:mipsel libpopt0:mipsel libprotobuf-dev:mipsel libprotobuf-lite17:mipsel libprotobuf17 libprotobuf17:mipsel libprotoc17 libpthread-stubs0-dev libpthread-stubs0-dev:mipsel libsigsegv2 libsm-dev:mipsel libsm6:mipsel libstdc++-8-dev:mipsel libstdc++6:mipsel libtool libuchardet0 libuuid1:mipsel libx11-6 libx11-6:mipsel libx11-data libx11-dev libx11-dev:mipsel libxau-dev libxau-dev:mipsel libxau6 libxau6:mipsel libxcb1 libxcb1:mipsel libxcb1-dev libxcb1-dev:mipsel libxdmcp-dev libxdmcp-dev:mipsel libxdmcp6 libxdmcp6:mipsel libxext-dev:mipsel libxext6:mipsel libxmu-dev:mipsel libxmu-headers libxmu6:mipsel libxt-dev:mipsel libxt6:mipsel linux-libc-dev:mipsel lsb-base m4 man-db pkg-config po-debconf protobuf-compiler sbuild-build-depends-anfo-dummy:mipsel x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 28.9 MB of archives. After this operation, 122 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hlPPts/apt_archive ./ sbuild-build-depends-anfo-dummy 0.invalid.0 [936 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.84 [17.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-8-base mipsel 8.3.0-3 [190 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc1 mipsel 1:8.3.0-3 [46.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.28-8 [2424 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 8.3.0-3 [6700 B] Get:34 http://debian.oregonstate.edu/debian unstable/main mipsel libbsd0 mipsel 0.9.1-2 [114 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main mipsel libbz2-1.0 mipsel 1.0.6-9 [45.2 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 4.19.28-2 [1152 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.28-8 [2322 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main mipsel libbz2-dev mipsel 1.0.6-9 [31.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-1 [90.3 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main mipsel libelf1 mipsel 0.176-1 [162 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-1 [213 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main mipsel libelf-dev mipsel 0.176-1 [77.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 lsb-base all 10.2019031300 [28.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main mipsel libice6 mipsel 2:1.0.9-2 [53.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main mipsel libuuid1 mipsel 2.33.1-0.1 [79.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main mipsel libsm6 mipsel 2:1.2.3-1 [33.2 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main mipsel libxau6 mipsel 1:1.0.8-1+b2 [19.6 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main mipsel libxdmcp6 mipsel 1:1.1.2-3 [25.7 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb1 mipsel 1.13.1-2 [130 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.7-1 [298 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main mipsel libx11-6 mipsel 2:1.6.7-1 [709 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main mipsel libxext6 mipsel 2:1.3.3-1+b2 [49.0 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main mipsel libxt6 mipsel 1:1.1.5-1+b3 [164 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main mipsel libxmu6 mipsel 2:1.1.2-2+b2 [55.0 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main mipsel libelk0 mipsel 3.99.8-4.2+b1 [168 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2018.4-4 [3128 B] Get:60 http://debian.oregonstate.edu/debian unstable/main mipsel libxau-dev mipsel 1:1.0.8-1+b2 [23.5 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main mipsel libxdmcp-dev mipsel 1:1.1.2-3 [42.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main mipsel libpthread-stubs0-dev mipsel 0.4-1 [5340 B] Get:64 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb1-dev mipsel 1.13.1-2 [175 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main mipsel libx11-dev mipsel 2:1.6.7-1 [828 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B] Get:67 http://debian.oregonstate.edu/debian unstable/main mipsel libxext-dev mipsel 2:1.3.3-1+b2 [109 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main mipsel libice-dev mipsel 2:1.0.9-2 [68.8 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main mipsel libsm-dev mipsel 2:1.2.3-1 [37.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main mipsel libxt-dev mipsel 1:1.1.5-1+b3 [429 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.7-1 [754 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1-dev amd64 1.13.1-2 [174 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-dev amd64 2:1.6.7-1 [827 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu-headers all 2:1.1.2-2 [51.9 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main mipsel libxmu-dev mipsel 2:1.1.2-2+b2 [68.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main mipsel libelk0-dev mipsel 3.99.8-4.2+b1 [228 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 8.3.0-3 [70.9 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-8-dev mipsel 8.3.0-3 [210 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mipsel libpopt0 mipsel 1.16-12 [48.3 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mipsel libpopt-dev mipsel 1.16-12 [52.7 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 8.3.0-3 [348 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mipsel libprotobuf17 mipsel 3.6.1.3-1 [681 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mipsel libprotobuf-lite17 mipsel 3.6.1.3-1 [151 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mipsel libprotobuf-dev mipsel 3.6.1.3-1 [1188 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libprotobuf17 amd64 3.6.1.3-1 [814 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libprotoc17 amd64 3.6.1.3-1 [668 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-8-dev mipsel 8.3.0-3 [1553 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 protobuf-compiler amd64 3.6.1.3-1 [64.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.9 MB in 1s (39.3 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15107 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... 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Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up linux-libc-dev:mipsel (4.19.28-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libpthread-stubs0-dev:amd64 (0.4-1) ... Setting up libpthread-stubs0-dev:mipsel (0.4-1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up autotools-dev (20180224.1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:mipsel (8.3.0-3) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up d-shlibs (0.84) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libprotobuf17:amd64 (3.6.1.3-1) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up gettext (0.19.8.1-9) ... Setting up libprotoc17:amd64 (3.6.1.3-1) ... Setting up libxau-dev:amd64 (1:1.0.8-1+b2) ... Setting up protobuf-compiler (3.6.1.3-1) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb1-dev:amd64 (1.13.1-2) ... Setting up po-debconf (1.0.21) ... Setting up libx11-dev:amd64 (2:1.6.7-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxmu-headers (2:1.1.2-2) ... Setting up libc6:mipsel (2.28-8) ... Setting up libc6-dev:mipsel (2.28-8) ... Setting up libbz2-1.0:mipsel (1.0.6-9) ... Setting up libbsd0:mipsel (0.9.1-2) ... Setting up libpopt0:mipsel (1.16-12) ... Setting up libbz2-dev:mipsel (1.0.6-9) ... Setting up libice6:mipsel (2:1.0.9-2) ... Setting up libxau6:mipsel (1:1.0.8-1+b2) ... Setting up libxdmcp6:mipsel (1:1.1.2-3) ... Setting up libxcb1:mipsel (1.13.1-2) ... Setting up libxau-dev:mipsel (1:1.0.8-1+b2) ... Setting up libice-dev:mipsel (2:1.0.9-2) ... Setting up libgcc1:mipsel (1:8.3.0-3) ... Setting up debhelper (12.1.1) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-1) ... Setting up libgomp1:mipsel (8.3.0-3) ... Setting up libpopt-dev:mipsel (1.16-12) ... Setting up dh-autoreconf (19) ... Setting up libxdmcp-dev:mipsel (1:1.1.2-3) ... Setting up libatomic1:mipsel (8.3.0-3) ... Setting up libuuid1:mipsel (2.33.1-0.1) ... Setting up libgcc-8-dev:mipsel (8.3.0-3) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-1) ... Setting up libx11-6:mipsel (2:1.6.7-1) ... Setting up libelf1:mipsel (0.176-1) ... Setting up libsm6:mipsel (2:1.2.3-1) ... Setting up libstdc++6:mipsel (8.3.0-3) ... Setting up libstdc++-8-dev:mipsel (8.3.0-3) ... Setting up libxcb1-dev:mipsel (1.13.1-2) ... Setting up libsm-dev:mipsel (2:1.2.3-1) ... Setting up libprotobuf-lite17:mipsel (3.6.1.3-1) ... Setting up libx11-dev:mipsel (2:1.6.7-1) ... Setting up libxext6:mipsel (2:1.3.3-1+b2) ... Setting up libelf-dev:mipsel (0.176-1) ... Setting up libxt6:mipsel (1:1.1.5-1+b3) ... Setting up libxext-dev:mipsel (2:1.3.3-1+b2) ... Setting up libprotobuf17:mipsel (3.6.1.3-1) ... Setting up libxmu6:mipsel (2:1.1.2-2+b2) ... Setting up libprotobuf-dev:mipsel (3.6.1.3-1) ... Setting up libxt-dev:mipsel (1:1.1.5-1+b3) ... Setting up libelk0:mipsel (3.99.8-4.2+b1) ... Setting up libxmu-dev:mipsel (2:1.1.2-2+b2) ... Setting up libelk0-dev:mipsel (3.99.8-4.2+b1) ... Setting up sbuild-build-depends-anfo-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-3 gcc-8_8.3.0-3 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-3 libstdc++-8-dev-mipsel-cross_8.3.0-2cross1 libstdc++6_8.3.0-3 libstdc++6-mipsel-cross_8.3.0-2cross1 linux-libc-dev_4.19.28-2 Package versions: adduser_3.118 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-16 binutils-common_2.31.1-16 binutils-mipsel-linux-gnu_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-3 cpp-8-mipsel-linux-gnu_8.3.0-2cross1 cpp-mipsel-linux-gnu_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-mipsel_12.6 d-shlibs_0.84 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-2 dpkg_1.19.6 dpkg-cross_2.6.15-2 dpkg-dev_1.19.6 dwz_0.12-3 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-3 g++-8-mipsel-linux-gnu_8.3.0-2cross1 g++-mipsel-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-3 gcc-8-base_8.3.0-3 gcc-8-cross-base_8.3.0-2cross1 gcc-8-mipsel-linux-gnu_8.3.0-2cross1 gcc-8-mipsel-linux-gnu-base_8.3.0-2cross1 gcc-mipsel-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0 libarchive-zip-perl_1.64-1 libasan5_8.3.0-3 libatomic1_8.3.0-3 libatomic1-mipsel-cross_8.3.0-2cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libbz2-dev_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-dev_2.28-8 libc6-dev-mipsel-cross_2.28-7cross1 libc6-mipsel-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-3 libcom-err2_1.45.0-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.6 libelf-dev_0.176-1 libelf1_0.176-1 libelk0_3.99.8-4.2+b1 libelk0-dev_3.99.8-4.2+b1 libext2fs2_1.45.0-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-3 libgcc-8-dev-mipsel-cross_8.3.0-2cross1 libgcc1_1:8.3.0-3 libgcc1-mipsel-cross_1:8.3.0-2cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-3 libgomp1_8.3.0-3 libgomp1-mipsel-cross_8.3.0-2cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-3 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-3 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-3 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-5 libpipeline1_1.5.1-2 libpopt-dev_1.16-12 libpopt0_1.16-12 libprotobuf-dev_3.6.1.3-1 libprotobuf-lite17_3.6.1.3-1 libprotobuf17_3.6.1.3-1 libprotoc17_3.6.1.3-1 libpthread-stubs0-dev_0.4-1 libquadmath0_8.3.0-3 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.33.1-0.1 libss2_1.45.0-1 libstdc++-8-dev_8.3.0-3 libstdc++-8-dev-mipsel-cross_8.3.0-2cross1 libstdc++6_8.3.0-3 libstdc++6-mipsel-cross_8.3.0-2cross1 libsystemd0_241-2 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-3 libubsan1_8.3.0-3 libuchardet0_0.0.6-3 libudev1_241-2 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libx11-dev_2:1.6.7-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb1_1.13.1-2 libxcb1-dev_1.13.1-2 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libxmu-dev_2:1.1.2-2+b2 libxmu-headers_2:1.1.2-2 libxmu6_2:1.1.2-2+b2 libxt-dev_1:1.1.5-1+b3 libxt6_1:1.1.5-1+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.28-2 linux-libc-dev-mipsel-cross_4.19.20-1cross1 login_1:4.5-1.1 lsb-base_10.2019031300 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-5 perl-base_5.28.1-5 perl-modules-5.28_5.28.1-5 pkg-config_0.29-6 po-debconf_1.0.21 protobuf-compiler_3.6.1.3-1 sbuild-build-depends-anfo-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-2 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 x11proto-xext-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Oct 15 14:55:48 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./anfo_0.98-7.dsc dpkg-source: info: extracting anfo in /<> dpkg-source: info: unpacking anfo_0.98.orig.tar.gz dpkg-source: info: unpacking anfo_0.98-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01-silence-narrowing-conversion.patch dpkg-source: info: applying 02-correct-minscore-self-initialization.patch dpkg-source: info: applying 03-include-unistd-forF_OK.patch dpkg-source: info: applying 04-reorder-template-for-new-scope-rules.patch dpkg-source: info: applying 05-autoreconf.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-9e99a35d-5921-4602-a958-241809076131 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package anfo dpkg-buildpackage: info: source version 0.98-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:77: warning: LT_INIT was called before AM_PROG_AR /usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR /usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from... configure.ac:77: the top level aclocal: overwriting 'm4/libtool.m4' with '/usr/share/aclocal/libtool.m4' aclocal: overwriting 'm4/ltoptions.m4' with '/usr/share/aclocal/ltoptions.m4' aclocal: overwriting 'm4/ltversion.m4' with '/usr/share/aclocal/ltversion.m4' aclocal: overwriting 'm4/lt~obsolete.m4' with '/usr/share/aclocal/lt~obsolete.m4' configure.ac:77: warning: LT_INIT was called before AM_PROG_AR /usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR aclocal.m4:70: AM_PROG_AR is expanded from... configure.ac:77: the top level libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:77: warning: LT_INIT was called before AM_PROG_AR /usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR /usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR aclocal.m4:70: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR aclocal.m4:70: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR aclocal.m4:70: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: installing './ar-lib' configure.ac:12: installing './compile' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mipsel-linux-gnu --libexecdir=\${prefix}/lib/mipsel-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mipsel-linux-gnu configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.mipsel checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mipsel-linux-gnu-strip... mipsel-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... mipsel-unknown-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for mipsel-linux-gnu-gcc... mipsel-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mipsel-linux-gnu-gcc accepts -g... yes checking for mipsel-linux-gnu-gcc option to accept ISO C89... none needed checking whether mipsel-linux-gnu-gcc understands -c and -o together... yes checking dependency style of mipsel-linux-gnu-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mipsel-linux-gnu-gcc... /usr/mipsel-linux-gnu/bin/ld checking if the linker (/usr/mipsel-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/mipsel-linux-gnu-nm -B checking the name lister (/usr/bin/mipsel-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to mipsel-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/mipsel-linux-gnu/bin/ld option to reload object files... -r checking for mipsel-linux-gnu-objdump... mipsel-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for mipsel-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for mipsel-linux-gnu-ar... mipsel-linux-gnu-ar checking for archiver @FILE support... @ checking for mipsel-linux-gnu-strip... (cached) mipsel-linux-gnu-strip checking for mipsel-linux-gnu-ranlib... mipsel-linux-gnu-ranlib checking command to parse /usr/bin/mipsel-linux-gnu-nm -B output from mipsel-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mipsel-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... mipsel-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mipsel-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for mipsel-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if mipsel-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if mipsel-linux-gnu-gcc static flag -static works... yes checking if mipsel-linux-gnu-gcc supports -c -o file.o... yes checking if mipsel-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the mipsel-linux-gnu-gcc linker (/usr/mipsel-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for mipsel-linux-gnu-g++... mipsel-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether mipsel-linux-gnu-g++ accepts -g... yes checking dependency style of mipsel-linux-gnu-g++... none checking how to run the C++ preprocessor... mipsel-linux-gnu-g++ -E checking for ld used by mipsel-linux-gnu-g++... /usr/mipsel-linux-gnu/bin/ld checking if the linker (/usr/mipsel-linux-gnu/bin/ld) is GNU ld... yes checking whether the mipsel-linux-gnu-g++ linker (/usr/mipsel-linux-gnu/bin/ld) supports shared libraries... yes checking for mipsel-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if mipsel-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if mipsel-linux-gnu-g++ static flag -static works... yes checking if mipsel-linux-gnu-g++ supports -c -o file.o... yes checking if mipsel-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the mipsel-linux-gnu-g++ linker (/usr/mipsel-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for protoc... /usr/bin/protoc checking for library containing exp... none required checking for library containing log1p... none required checking for poptGetContext in -lpopt... yes checking for deflate in -lz... yes checking for BZ2_bzCompress in -lbz2... yes checking for Elk_Init in -lelk... yes checking popt.h usability... yes checking popt.h presence... yes checking for popt.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for mipsel-linux-gnu-pkg-config... /usr/bin/mipsel-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for protobuf... yes checking google/protobuf/message.h usability... yes checking google/protobuf/message.h presence... yes checking for google/protobuf/message.h... yes checking elk/scheme.h usability... yes checking elk/scheme.h presence... yes checking for elk/scheme.h... yes checking for ANSI C header files... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for working volatile... yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for int32_t... yes checking for int64_t... yes checking for size_t... yes checking for ssize_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for memset... yes checking for munmap... yes checking for pow... yes checking for strerror... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating man/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode checking for mipsel-linux-gnu-ar... (cached) mipsel-linux-gnu-ar checking the archiver (mipsel-linux-gnu-ar) interface... ar dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' protoc -I. -I/usr/include --cpp_out=. config.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: config.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) protoc -I. -I/usr/include --cpp_out=. output.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: output.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) [libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: config.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) make all-am make[4]: Entering directory '/<>/src' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fa2dna.o fa2dna.cc /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o align.lo align.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c align.cc -fPIC -DPIC -o .libs/align.o In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h:34:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h: In destructor 'virtual DeflateStream::~DeflateStream()': compress_stream.h:198:36: warning: throw will always call terminate() [-Wterminate] else if( r != Z_OK ) throw zs_.msg ; ^~~ compress_stream.h:198:36: note: in C++11 destructors default to noexcept In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h:278:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h: In destructor 'virtual BzipStream::~BzipStream()': compress_stream.h:379:45: warning: throw will always call terminate() [-Wterminate] else if( r < BZ_OK ) throw BzipError( r ) ; ^ compress_stream.h:379:45: note: in C++11 destructors default to noexcept compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c align.cc -o align.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo_common.lo anfo_common.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo_common.cc -fPIC -DPIC -o .libs/anfo_common.o In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h:34:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h: In destructor 'virtual DeflateStream::~DeflateStream()': compress_stream.h:198:36: warning: throw will always call terminate() [-Wterminate] else if( r != Z_OK ) throw zs_.msg ; ^~~ compress_stream.h:198:36: note: in C++11 destructors default to noexcept In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h:278:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h: In destructor 'virtual BzipStream::~BzipStream()': compress_stream.h:379:45: warning: throw will always call terminate() [-Wterminate] else if( r < BZ_OK ) throw BzipError( r ) ; ^ compress_stream.h:379:45: note: in C++11 destructors default to noexcept compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo_common.cc -o anfo_common.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o concurrent_stream.lo concurrent_stream.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c concurrent_stream.cc -fPIC -DPIC -o .libs/concurrent_stream.o In file included from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ concurrent_stream.cc: In member function 'virtual output::Result streams::ConcurrentStream::fetch_result()': concurrent_stream.cc:178:2: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr< Result > r( outgoing_[ next_out_++ ] ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ concurrent_stream.cc: In member function 'void streams::ConcurrentStream::dequeue(streams::Stream*)': concurrent_stream.cc:212:2: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr< Result > r( incoming_[ next_in_ ] ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c concurrent_stream.cc -o concurrent_stream.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ducttape.lo ducttape.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ducttape.cc -fPIC -DPIC -o .libs/ducttape.o In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h:34:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h: In destructor 'virtual DeflateStream::~DeflateStream()': compress_stream.h:198:36: warning: throw will always call terminate() [-Wterminate] else if( r != Z_OK ) throw zs_.msg ; ^~~ compress_stream.h:198:36: note: in C++11 destructors default to noexcept In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h:278:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h: In destructor 'virtual BzipStream::~BzipStream()': compress_stream.h:379:45: warning: throw will always call terminate() [-Wterminate] else if( r < BZ_OK ) throw BzipError( r ) ; ^ compress_stream.h:379:45: note: in C++11 destructors default to noexcept compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.cc:21: ducttape.h:139:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ducttape.cc -o ducttape.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o index.lo index.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c index.cc -fPIC -DPIC -o .libs/index.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c index.cc -o index.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o misc_streams.lo misc_streams.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c misc_streams.cc -fPIC -DPIC -o .libs/misc_streams.o In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h:34:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h: In destructor 'virtual DeflateStream::~DeflateStream()': compress_stream.h:198:36: warning: throw will always call terminate() [-Wterminate] else if( r != Z_OK ) throw zs_.msg ; ^~~ compress_stream.h:198:36: note: in C++11 destructors default to noexcept In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h: At global scope: compress_stream.h:225:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h:278:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h: In destructor 'virtual BzipStream::~BzipStream()': compress_stream.h:379:45: warning: throw will always call terminate() [-Wterminate] else if( r < BZ_OK ) throw BzipError( r ) ; ^ compress_stream.h:379:45: note: in C++11 destructors default to noexcept compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ misc_streams.cc: In constructor 'streams::RegionFilter::RegionFilter(const std::pair*, std::__cxx11::basic_string >&)': misc_streams.cc:489:2: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr< istream > deffile( p.first ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c misc_streams.cc -o misc_streams.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o output_streams.lo output_streams.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c output_streams.cc -fPIC -DPIC -o .libs/output_streams.o In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h:34:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h: In destructor 'virtual DeflateStream::~DeflateStream()': compress_stream.h:198:36: warning: throw will always call terminate() [-Wterminate] else if( r != Z_OK ) throw zs_.msg ; ^~~ compress_stream.h:198:36: note: in C++11 destructors default to noexcept In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h:278:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h: In destructor 'virtual BzipStream::~BzipStream()': compress_stream.h:379:45: warning: throw will always call terminate() [-Wterminate] else if( r < BZ_OK ) throw BzipError( r ) ; ^ compress_stream.h:379:45: note: in C++11 destructors default to noexcept compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:45:3: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:72:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:123:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:138:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:149:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:176:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from config.pb.h:9, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c output_streams.cc -o output_streams.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.lo sequence.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.cc -fPIC -DPIC -o .libs/sequence.o In file included from stream.h:20, from sequence.cc:23: compress_stream.h:34:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from sequence.cc:23: compress_stream.h:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from sequence.cc:23: compress_stream.h: In destructor 'virtual DeflateStream::~DeflateStream()': compress_stream.h:198:36: warning: throw will always call terminate() [-Wterminate] else if( r != Z_OK ) throw zs_.msg ; ^~~ compress_stream.h:198:36: note: in C++11 destructors default to noexcept In file included from stream.h:20, from sequence.cc:23: compress_stream.h: At global scope: compress_stream.h:225:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from sequence.cc:23: compress_stream.h:278:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from sequence.cc:23: compress_stream.h: In destructor 'virtual BzipStream::~BzipStream()': compress_stream.h:379:45: warning: throw will always call terminate() [-Wterminate] else if( r < BZ_OK ) throw BzipError( r ) ; ^ compress_stream.h:379:45: note: in C++11 destructors default to noexcept compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from sequence.cc:23: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from sequence.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.cc -o sequence.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stream.lo stream.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stream.cc -fPIC -DPIC -o .libs/stream.o In file included from stream.cc:21: compress_stream.h:34:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.cc:21: compress_stream.h:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.cc:21: compress_stream.h: In destructor 'virtual DeflateStream::~DeflateStream()': compress_stream.h:198:36: warning: throw will always call terminate() [-Wterminate] else if( r != Z_OK ) throw zs_.msg ; ^~~ compress_stream.h:198:36: note: in C++11 destructors default to noexcept In file included from stream.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.cc:21: compress_stream.h:278:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.cc:21: compress_stream.h: In destructor 'virtual BzipStream::~BzipStream()': compress_stream.h:379:45: warning: throw will always call terminate() [-Wterminate] else if( r < BZ_OK ) throw BzipError( r ) ; ^ compress_stream.h:379:45: note: in C++11 destructors default to noexcept compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ stream.cc:81:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader::AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) : is_( is ), name_( name ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ stream.cc:421:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader::ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) : is_( is ), name_( name ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ stream.cc:1093:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ stream.cc:1114:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] StreamWithProgress( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, int64_t total ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ stream.cc:1149:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] StreamHolder make_input_stream_( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, bool solexa_scores, char origin, const string& genome ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ stream.cc: In function 'streams::StreamHolder streams::{anonymous}::make_input_stream_(std::auto_ptr, const string&, bool, char, const string&)': stream.cc:1179:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > bs( new BunzipStream( is ) ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ stream.cc:1189:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > zs( new InflateStream( is ) ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ stream.cc: In member function 'virtual output::Header streams::UniversalReader::fetch_header()': stream.cc:1233:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileInputStream > s( new google::protobuf::io::FileInputStream( fd ) ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ stream.cc:1238:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr(s), name_, st.st_size ) ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ stream.cc: At global scope: stream.cc:1378:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader::BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from stream.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stream.cc -o stream.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.lo util.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.cc -fPIC -DPIC -o .libs/util.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.cc -o util.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo-elk.lo anfo-elk.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo-elk.cc -fPIC -DPIC -o .libs/anfo-elk.o In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h:34:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h: In destructor 'virtual DeflateStream::~DeflateStream()': compress_stream.h:198:36: warning: throw will always call terminate() [-Wterminate] else if( r != Z_OK ) throw zs_.msg ; ^~~ compress_stream.h:198:36: note: in C++11 destructors default to noexcept In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h: At global scope: compress_stream.h:225:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h:278:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h: In destructor 'virtual BzipStream::~BzipStream()': compress_stream.h:379:45: warning: throw will always call terminate() [-Wterminate] else if( r < BZ_OK ) throw BzipError( r ) ; ^ compress_stream.h:379:45: note: in C++11 destructors default to noexcept compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-elk.cc:28: ducttape.h:139:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:45:3: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:72:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:123:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:138:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:149:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:176:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo-elk.cc -o anfo-elk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile mipsel-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fastlz.lo fastlz.c libtool: compile: mipsel-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fastlz.c -fPIC -DPIC -o .libs/fastlz.o libtool: compile: mipsel-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fastlz.c -o fastlz.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o config.pb.lo config.pb.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c config.pb.cc -fPIC -DPIC -o .libs/config.pb.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c config.pb.cc -o config.pb.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o output.pb.lo output.pb.cc libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c output.pb.cc -fPIC -DPIC -o .libs/output.pb.o libtool: compile: mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c output.pb.cc -o output.pb.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libanfo.la -rpath /usr/lib/mipsel-linux-gnu align.lo anfo_common.lo concurrent_stream.lo ducttape.lo index.lo misc_streams.lo output_streams.lo sequence.lo stream.lo util.lo anfo-elk.lo fastlz.lo config.pb.lo output.pb.lo -L/usr/lib/mipsel-linux-gnu -lprotobuf -pthread -lpthread -lelk -lbz2 -lz -lpopt libtool: link: mipsel-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/mipsel-linux-gnu/8/../../../../mipsel-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/mipsel-linux-gnu/8/crtbeginS.o .libs/align.o .libs/anfo_common.o .libs/concurrent_stream.o .libs/ducttape.o .libs/index.o .libs/misc_streams.o .libs/output_streams.o .libs/sequence.o .libs/stream.o .libs/util.o .libs/anfo-elk.o .libs/fastlz.o .libs/config.pb.o .libs/output.pb.o -L/usr/lib/mipsel-linux-gnu -lprotobuf -lpthread -lelk -lbz2 -lz -lpopt -L/usr/lib/gcc-cross/mipsel-linux-gnu/8 -L/usr/lib/gcc-cross/mipsel-linux-gnu/8/../../../../mipsel-linux-gnu/lib/../lib -L/lib/mipsel-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/mipsel-linux-gnu/8/../../../../mipsel-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/mipsel-linux-gnu/8/crtendS.o /usr/lib/gcc-cross/mipsel-linux-gnu/8/../../../../mipsel-linux-gnu/lib/../lib/crtn.o -pthread -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -pthread -Wl,-soname -Wl,libanfo.so.0 -o .libs/libanfo.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libanfo.so.0" && ln -s "libanfo.so.0.0.0" "libanfo.so.0") libtool: link: (cd ".libs" && rm -f "libanfo.so" && ln -s "libanfo.so.0.0.0" "libanfo.so") libtool: link: mipsel-linux-gnu-ar cru .libs/libanfo.a align.o anfo_common.o concurrent_stream.o ducttape.o index.o misc_streams.o output_streams.o sequence.o stream.o util.o anfo-elk.o fastlz.o config.pb.o output.pb.o mipsel-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: mipsel-linux-gnu-ranlib .libs/libanfo.a libtool: link: ( cd ".libs" && rm -f "libanfo.la" && ln -s "../libanfo.la" "libanfo.la" ) /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o fa2dna fa2dna.o libanfo.la -L/usr/lib/mipsel-linux-gnu -lprotobuf -pthread -lelk -lbz2 -lz -lpopt libtool: link: mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fa2dna fa2dna.o -pthread ./.libs/libanfo.so -L/usr/lib/mipsel-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o dnaindex.o dnaindex.cc /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o dnaindex dnaindex.o libanfo.la -L/usr/lib/mipsel-linux-gnu -lprotobuf -pthread -lelk -lbz2 -lz -lpopt libtool: link: mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/dnaindex dnaindex.o -pthread ./.libs/libanfo.so -L/usr/lib/mipsel-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo-tool.o anfo-tool.cc In file included from anfo-tool.cc:21: compress_stream.h:34:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-tool.cc:21: compress_stream.h:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-tool.cc:21: compress_stream.h: In destructor 'virtual DeflateStream::~DeflateStream()': compress_stream.h:198:36: warning: throw will always call terminate() [-Wterminate] else if( r != Z_OK ) throw zs_.msg ; ^~~ compress_stream.h:198:36: note: in C++11 destructors default to noexcept In file included from anfo-tool.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-tool.cc:21: compress_stream.h:278:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-tool.cc:21: compress_stream.h: In destructor 'virtual BzipStream::~BzipStream()': compress_stream.h:379:45: warning: throw will always call terminate() [-Wterminate] else if( r < BZ_OK ) throw BzipError( r ) ; ^ compress_stream.h:379:45: note: in C++11 destructors default to noexcept compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-tool.cc:22: ducttape.h:139:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:45:3: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:72:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:123:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:138:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:149:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:176:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< std::ostream > out_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o anfo-tool anfo-tool.o libanfo.la -L/usr/lib/mipsel-linux-gnu -lprotobuf -pthread -lelk -lbz2 -lz -lpopt libtool: link: mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/anfo-tool anfo-tool.o -pthread ./.libs/libanfo.so -L/usr/lib/mipsel-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo.o anfo.cc In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h:34:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h: In destructor 'virtual DeflateStream::~DeflateStream()': compress_stream.h:198:36: warning: throw will always call terminate() [-Wterminate] else if( r != Z_OK ) throw zs_.msg ; ^~~ compress_stream.h:198:36: note: in C++11 destructors default to noexcept In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h:278:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h: In destructor 'virtual BzipStream::~BzipStream()': compress_stream.h:379:45: warning: throw will always call terminate() [-Wterminate] else if( r < BZ_OK ) throw BzipError( r ) ; ^ compress_stream.h:379:45: note: in C++11 destructors default to noexcept compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o anfo anfo.o libanfo.la -L/usr/lib/mipsel-linux-gnu -lprotobuf -pthread -lelk -lbz2 -lz -lpopt libtool: link: mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/anfo anfo.o -pthread ./.libs/libanfo.so -L/usr/lib/mipsel-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o index-test.o index-test.cc In file included from index-test.cc:27: compress_stream.h:34:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:27: compress_stream.h:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:27: compress_stream.h: In destructor 'virtual DeflateStream::~DeflateStream()': compress_stream.h:198:36: warning: throw will always call terminate() [-Wterminate] else if( r != Z_OK ) throw zs_.msg ; ^~~ compress_stream.h:198:36: note: in C++11 destructors default to noexcept In file included from index-test.cc:27: compress_stream.h: At global scope: compress_stream.h:225:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:27: compress_stream.h:278:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:27: compress_stream.h: In destructor 'virtual BzipStream::~BzipStream()': compress_stream.h:379:45: warning: throw will always call terminate() [-Wterminate] else if( r < BZ_OK ) throw BzipError( r ) ; ^ compress_stream.h:379:45: note: in C++11 destructors default to noexcept compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from index-test.cc:30: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from compress_stream.h:22, from index-test.cc:27: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o index-test index-test.o libanfo.la -L/usr/lib/mipsel-linux-gnu -lprotobuf -pthread -lelk -lbz2 -lz -lpopt libtool: link: mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/index-test index-test.o -pthread ./.libs/libanfo.so -L/usr/lib/mipsel-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt -pthread mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o file-info.o file-info.cc In file included from stream.h:20, from file-info.cc:25: compress_stream.h:34:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from file-info.cc:25: compress_stream.h:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from file-info.cc:25: compress_stream.h: In destructor 'virtual DeflateStream::~DeflateStream()': compress_stream.h:198:36: warning: throw will always call terminate() [-Wterminate] else if( r != Z_OK ) throw zs_.msg ; ^~~ compress_stream.h:198:36: note: in C++11 destructors default to noexcept In file included from stream.h:20, from file-info.cc:25: compress_stream.h: At global scope: compress_stream.h:225:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from file-info.cc:25: compress_stream.h:278:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from stream.h:20, from file-info.cc:25: compress_stream.h: In destructor 'virtual BzipStream::~BzipStream()': compress_stream.h:379:45: warning: throw will always call terminate() [-Wterminate] else if( r < BZ_OK ) throw BzipError( r ) ; ^ compress_stream.h:379:45: note: in C++11 destructors default to noexcept compress_stream.h: In function 'google::protobuf::io::FileOutputStream* make_output_stream(const char*)': compress_stream.h:395:7: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::FileOutputStream > fos( ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h: At global scope: stream.h:319:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:323:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:345:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:385:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:387:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:414:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:416:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:422:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:747:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:762:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:772:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:795:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:806:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:821:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:832:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:846:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from file-info.cc:25: stream.h:880:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/8/memory:80, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:111, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mipsel-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o file-info file-info.o libanfo.la -L/usr/lib/mipsel-linux-gnu -lprotobuf -pthread -lelk -lbz2 -lz -lpopt libtool: link: mipsel-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/file-info file-info.o -pthread ./.libs/libanfo.so -L/usr/lib/mipsel-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt -pthread echo "; DO NOT EDIT THIS FILE! EDIT anfo.scm.in AND RUN MAKE INSTEAD!" > anfo.scm sed -e "s#__LIBDIR__#/usr/lib/mipsel-linux-gnu#g" < ./anfo.scm.in >> anfo.scm make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' Making all in man make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/man' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make install-am make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/mipsel-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libanfo.la '/<>/debian/tmp/usr/lib/mipsel-linux-gnu' libtool: install: /usr/bin/install -c .libs/libanfo.so.0.0.0 /<>/debian/tmp/usr/lib/mipsel-linux-gnu/libanfo.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/mipsel-linux-gnu && { ln -s -f libanfo.so.0.0.0 libanfo.so.0 || { rm -f libanfo.so.0 && ln -s libanfo.so.0.0.0 libanfo.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/mipsel-linux-gnu && { ln -s -f libanfo.so.0.0.0 libanfo.so || { rm -f libanfo.so && ln -s libanfo.so.0.0.0 libanfo.so; }; }) libtool: install: /usr/bin/install -c .libs/libanfo.lai /<>/debian/tmp/usr/lib/mipsel-linux-gnu/libanfo.la libtool: install: /usr/bin/install -c .libs/libanfo.a /<>/debian/tmp/usr/lib/mipsel-linux-gnu/libanfo.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/mipsel-linux-gnu/libanfo.a libtool: install: mipsel-linux-gnu-ranlib /<>/debian/tmp/usr/lib/mipsel-linux-gnu/libanfo.a libtool: warning: remember to run 'libtool --finish /usr/lib/mipsel-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c fa2dna dnaindex anfo-tool anfo '/<>/debian/tmp/usr/bin' libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/mipsel-linux-gnu' libtool: install: /usr/bin/install -c .libs/fa2dna /<>/debian/tmp/usr/bin/fa2dna libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/mipsel-linux-gnu' libtool: install: /usr/bin/install -c .libs/dnaindex /<>/debian/tmp/usr/bin/dnaindex libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/mipsel-linux-gnu' libtool: install: /usr/bin/install -c .libs/anfo-tool /<>/debian/tmp/usr/bin/anfo-tool libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/mipsel-linux-gnu' libtool: install: /usr/bin/install -c .libs/anfo /<>/debian/tmp/usr/bin/anfo /bin/mkdir -p '/<>/debian/tmp/usr/lib/mipsel-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c index-test file-info '/<>/debian/tmp/usr/lib/mipsel-linux-gnu' libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/mipsel-linux-gnu' libtool: install: /usr/bin/install -c .libs/index-test /<>/debian/tmp/usr/lib/mipsel-linux-gnu/index-test libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/mipsel-linux-gnu' libtool: install: /usr/bin/install -c .libs/file-info /<>/debian/tmp/usr/lib/mipsel-linux-gnu/file-info /bin/mkdir -p '/<>/debian/tmp/usr/share/anfo' /usr/bin/install -c -m 644 config.proto output.proto '/<>/debian/tmp/usr/share/anfo' /bin/mkdir -p '/<>/debian/tmp/usr/share/elk' /usr/bin/install -c srfi-88.scm srfi-89.scm '/<>/debian/tmp/usr/share/elk' /bin/mkdir -p '/<>/debian/tmp/usr/include/anfo' /usr/bin/install -c -m 644 align.h align_fwd.h anfo_common.h compress_stream.h concurrent_stream.h conffile.h ducttape.h index.h logdom.h misc_streams.h output_streams.h sequence.h stream.h trim.h util.h '/<>/debian/tmp/usr/include/anfo' /bin/mkdir -p '/<>/debian/tmp/usr/share/elk' /usr/bin/install -c anfo.scm '/<>/debian/tmp/usr/share/elk' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in man make[2]: Entering directory '/<>/man' make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 fa2dna.1 dnaindex.1 anfo-sge.1 anfo-tool.1 file-info.1 '/<>/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/<>/man' make[2]: Leaving directory '/<>/man' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/anfo' /usr/bin/install -c -m 644 README '/<>/debian/tmp/usr/share/doc/anfo/.' /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/anfo/example' /usr/bin/install -c -m 644 example/ancient.cfg example/default.cfg example/split-anfo.scm example/threebam.scm '/<>/debian/tmp/usr/share/doc/anfo/example' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' rm `find debian/tmp -name '*.la'` d-shlibmove --commit \ --multiarch \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/libanfo.so Library package automatic movement utility --> libbz2-dev package exists. --> libelk0-dev package exists. --> libpopt-dev package exists. --> libprotobuf-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libanfo0-dev/usr/lib/mipsel-linux-gnu install -d -m 755 debian/libanfo0/usr/lib/mipsel-linux-gnu mv debian/tmp/usr/lib/mipsel-linux-gnu/libanfo.a debian/libanfo0-dev/usr/lib/mipsel-linux-gnu mv debian/tmp/usr/lib/mipsel-linux-gnu/libanfo.la debian/libanfo0-dev/usr/lib/mipsel-linux-gnu || true mv debian/tmp/usr/lib/mipsel-linux-gnu/libanfo.so debian/libanfo0-dev/usr/lib/mipsel-linux-gnu mv /<>/debian/tmp/usr/lib/mipsel-linux-gnu/libanfo.so.0 debian/libanfo0/usr/lib/mipsel-linux-gnu mv /<>/debian/tmp/usr/lib/mipsel-linux-gnu/libanfo.so.0.0.0 debian/libanfo0/usr/lib/mipsel-linux-gnu PKGDEV=libanfo0-dev PKGSHL=libanfo0 install -d -m 755 debian/libanfo0-dev/usr/include mv debian/tmp/usr/include/anfo debian/libanfo0-dev/usr/include mv: cannot stat 'debian/tmp/usr/lib/mipsel-linux-gnu/libanfo.la': No such file or directory dh_install mv debian/anfo/usr/lib/* debian/anfo/usr/lib/anfo make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman # delete unused manpage find debian/anfo -name anfo-sge.1 -delete make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/anfo -perm -5 -type f \( -name '*.scm' \) -print0 2>/dev/null | xargs -0r chmod 644 make[1]: Leaving directory '/<>' dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/anfo/usr/bin/anfo debian/anfo/usr/lib/anfo/index-test debian/anfo/usr/bin/anfo-tool debian/anfo/usr/lib/anfo/file-info debian/anfo/usr/bin/fa2dna debian/anfo/usr/bin/dnaindex were not linked against libbz2.so.1.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libanfo0/usr/lib/mipsel-linux-gnu/libanfo.so.0.0.0 was not linked against libpopt.so.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'anfo' in '../anfo_0.98-7_mipsel.deb'. dpkg-deb: building package 'anfo-dbgsym' in '../anfo-dbgsym_0.98-7_mipsel.deb'. dpkg-deb: building package 'libanfo0' in '../libanfo0_0.98-7_mipsel.deb'. dpkg-deb: building package 'libanfo0-dbgsym' in '../libanfo0-dbgsym_0.98-7_mipsel.deb'. dpkg-deb: building package 'libanfo0-dev' in '../libanfo0-dev_0.98-7_mipsel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../anfo_0.98-7_mipsel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-03-26T08:55:36Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-hlPPts/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-anfo-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-hlPPts/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hlPPts/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-hlPPts/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hlPPts/apt_archive ./ Sources [814 B] Get:5 copy:/<>/resolver-hlPPts/apt_archive ./ Packages [890 B] Fetched 2667 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:mipsel t1utils 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 7776 kB of archives. After this operation, 20.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hlPPts/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-1 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-2 [640 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-1 [867 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-1 [1531 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.11.0 [1187 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7776 kB in 0s (47.6 MB/s) Selecting previously unselected package netbase. (Reading database ... 19268 files and directories currently installed.) Preparing to unpack .../00-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.13-1_amd64.deb ... Unpacking gpgconf (2.2.13-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.27.2-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.27.2-2) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.13-1_amd64.deb ... Unpacking gpg (2.2.13-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.34+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.34+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../09-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../10-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../11-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../12-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../13-libcgi-pm-perl_4.40-1_all.deb ... Unpacking libcgi-pm-perl (4.40-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../14-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../15-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../16-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../17-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../18-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../19-libssl1.1_1.1.1b-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1b-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../20-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../21-libnet-ssleay-perl_1.85-2+b1_amd64.deb ... Unpacking libnet-ssleay-perl (1.85-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../22-libio-socket-ssl-perl_2.060-3_all.deb ... Unpacking libio-socket-ssl-perl (2.060-3) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../23-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../24-libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../25-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../26-libnet-dns-perl_1.19-1_all.deb ... Unpacking libnet-dns-perl (1.19-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../27-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../28-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../29-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../30-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../31-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../32-libfuture-perl_0.39-1_all.deb ... Unpacking libfuture-perl (0.39-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../33-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../34-libio-async-perl_0.72-1_all.deb ... Unpacking libio-async-perl (0.72-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../35-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../36-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../37-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) ... Selecting previously unselected package libparse-debianchangelog-perl. Preparing to unpack .../38-libparse-debianchangelog-perl_1.2.0-13_all.deb ... Unpacking libparse-debianchangelog-perl (1.2.0-13) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../39-libpath-tiny-perl_0.108-1_all.deb ... Unpacking libpath-tiny-perl (0.108-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../40-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../41-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../42-libyaml-0-2_0.2.1-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.1-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../43-libyaml-libyaml-perl_0.76+repack-1_amd64.deb ... Unpacking libyaml-libyaml-perl (0.76+repack-1) ... Selecting previously unselected package patchutils. Preparing to unpack .../44-patchutils_0.3.4-2_amd64.deb ... Unpacking patchutils (0.3.4-2) ... Selecting previously unselected package t1utils. Preparing to unpack .../45-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package lintian. Preparing to unpack .../46-lintian_2.11.0_all.deb ... Unpacking lintian (2.11.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:mipsel. Preparing to unpack .../47-sbuild-build-depends-lintian-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-lintian-dummy:mipsel (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.34+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libssl1.1:amd64 (1.1.1b-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libsqlite3-0:amd64 (3.27.2-2) ... Setting up libfuture-perl (0.39-1) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up libio-async-perl (0.72-1) ... Setting up patchutils (0.3.4-2) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up diffstat (1.62-1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up netbase (5.6) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (7.0-5) ... Setting up liburi-perl (1.76-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libnet-dns-perl (1.19-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.13-1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up gpg (2.2.13-1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up libemail-valid-perl (1.202-1) ... Setting up lintian (2.11.0) ... Setting up sbuild-build-depends-lintian-dummy:mipsel (0.invalid.0) ... Processing triggers for man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-8) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ anfo_0.98-7_mipsel.changes: --------------------------- Format: 1.8 Date: Mon, 15 Oct 2018 15:41:57 +0200 Source: anfo Binary: anfo anfo-dbgsym libanfo0 libanfo0-dbgsym libanfo0-dev Built-For-Profiles: cross nocheck Architecture: mipsel Version: 0.98-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: anfo - Short Read Aligner/Mapper from MPG libanfo0 - Library for Short Read Aligner/Mapper from MPG libanfo0-dev - Development files for Short Read Aligner/Mapper from MPG Changes: anfo (0.98-7) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 Checksums-Sha1: c652da0a9efc0224034af9a37db62993b6baa125 1461892 anfo-dbgsym_0.98-7_mipsel.deb 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libanfo0-dev_0.98-7_mipsel.deb 69c5694d69909f4d0fc38695fd42b7a72932da5cc6f4d3ca8fb40f0d8a4b95e1 242732 libanfo0_0.98-7_mipsel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 26 Mar 2019 08:55:36 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 1.8.0), autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.1), base-passwd (= 3.5.46), bash (= 5.0-2), binutils (= 2.31.1-16), binutils-common (= 2.31.1-16), binutils-x86-64-linux-gnu (= 2.31.1-16), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-3), d-shlibs (= 0.84), dash (= 0.5.10.2-5), debconf (= 1.5.71), debhelper (= 12.1.1), debian-archive-keyring (= 2018.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.2-1), diffutils (= 1:3.7-2), dpkg (= 1.19.6), dpkg-dev (= 1.19.6), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-3), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-3), gcc-8-base (= 8.3.0-3), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), gpgv (= 2.2.13-1), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libapt-pkg5.0 (= 1.8.0), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.3.0-3), libatomic1 (= 8.3.0-3), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.4-2), libaudit1 (= 1:2.8.4-2), libbinutils (= 2.31.1-16), libblkid1 (= 2.33.1-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9), libbz2-dev (= 1.0.6-9), libc-bin (= 2.28-8), libc-dev-bin (= 2.28-8), libc6 (= 2.28-8), libc6-dev (= 2.28-8), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.3.0-3), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.6), libelf-dev (= 0.176-1), libelf1 (= 0.176-1), libelk0 (= 3.99.8-4.2+b1), libelk0-dev (= 3.99.8-4.2+b1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.2-1), libgcc-8-dev (= 8.3.0-3), libgcc1 (= 1:8.3.0-3), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4), libgdbm6 (= 1.18.1-4), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.6-3), libgomp1 (= 8.3.0-3), libgpg-error0 (= 1.35-1), libhogweed4 (= 3.4.1-1), libice-dev (= 2:1.0.9-2), libice6 (= 2:1.0.9-2), libicu63 (= 63.1-6), libidn2-0 (= 2.0.5-1), libisl19 (= 0.20-2), libitm1 (= 8.3.0-3), liblsan0 (= 8.3.0-3), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-3), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libnettle6 (= 3.4.1-1), libp11-kit0 (= 0.23.15-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-5), libpipeline1 (= 1.5.1-2), libpopt-dev (= 1.16-12), libpopt0 (= 1.16-12), libprotobuf-dev (= 3.6.1.3-1), libprotobuf-lite17 (= 3.6.1.3-1), libprotobuf17 (= 3.6.1.3-1), libprotoc17 (= 3.6.1.3-1), libpthread-stubs0-dev (= 0.4-1), libquadmath0 (= 8.3.0-3), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsemanage-common (= 2.8-2), libsemanage1 (= 2.8-2), libsepol1 (= 2.8-1), libsigsegv2 (= 2.12-2), libsm-dev (= 2:1.2.3-1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.33.1-0.1), libstdc++-8-dev (= 8.3.0-3), libstdc++6 (= 8.3.0-3), libsystemd0 (= 241-2), libtasn1-6 (= 4.13-3), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-3), libubsan1 (= 8.3.0-3), libuchardet0 (= 0.0.6-3), libudev1 (= 241-2), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libx11-6 (= 2:1.6.7-1), libx11-data (= 2:1.6.7-1), libx11-dev (= 2:1.6.7-1), libxau-dev (= 1:1.0.8-1+b2), libxau6 (= 1:1.0.8-1+b2), libxcb1 (= 1.13.1-2), libxcb1-dev (= 1.13.1-2), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.3-1+b2), libxext6 (= 2:1.3.3-1+b2), libxml2 (= 2.9.4+dfsg1-7+b3), libxmu-dev (= 2:1.1.2-2+b2), libxmu-headers (= 2:1.1.2-2), libxmu6 (= 2:1.1.2-2+b2), libxt-dev (= 1:1.1.5-1+b3), libxt6 (= 1:1.1.5-1+b3), libzstd1 (= 1.3.8+dfsg-3), linux-libc-dev (= 4.19.28-2), login (= 1:4.5-1.1), lsb-base (= 10.2019031300), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), passwd (= 1:4.5-1.1), patch (= 2.7.6-3), perl (= 5.28.1-5), perl-base (= 5.28.1-5), perl-modules-5.28 (= 5.28.1-5), pkg-config (= 0.29-6), po-debconf (= 1.0.21), protobuf-compiler (= 3.6.1.3-1), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-5), util-linux (= 2.33.1-0.1), x11-common (= 1:7.7+19), x11proto-core-dev (= 2018.4-4), x11proto-dev (= 2018.4-4), x11proto-xext-dev (= 2018.4-4), xorg-sgml-doctools (= 1:1.11-1), xtrans-dev (= 1.3.5-1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1), zlib1g-dev (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1539610917" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ anfo-dbgsym_0.98-7_mipsel.deb ----------------------------- new Debian package, version 2.0. size 1461892 bytes: control archive=804 bytes. 563 bytes, 12 lines control 636 bytes, 6 lines md5sums Package: anfo-dbgsym Source: anfo Version: 0.98-7 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 1523 Depends: anfo (= 0.98-7) Section: debug Priority: optional Description: debug symbols for anfo Build-Ids: 764c28976219263c04d2753bdbaf71723b0a4746 b721e2be174ea2ae604ebcba8781a8d006a598de d3dfdaa61e59732a7680df75f0c20f13de0c5fe4 db3bcd553fe88df8b2137ccbf5ff5fbdd71850d4 ed98092463a1855dbce6ecd5eb20eb34563850e7 f2b372e3e594e47f678a35ca07c3fd756ed99fec drwxr-xr-x root/root 0 2018-10-15 13:41 ./ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/debug/.build-id/76/ -rw-r--r-- root/root 133252 2018-10-15 13:41 ./usr/lib/debug/.build-id/76/4c28976219263c04d2753bdbaf71723b0a4746.debug drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/debug/.build-id/b7/ -rw-r--r-- root/root 565072 2018-10-15 13:41 ./usr/lib/debug/.build-id/b7/21e2be174ea2ae604ebcba8781a8d006a598de.debug drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/debug/.build-id/d3/ -rw-r--r-- root/root 192012 2018-10-15 13:41 ./usr/lib/debug/.build-id/d3/dfdaa61e59732a7680df75f0c20f13de0c5fe4.debug drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/debug/.build-id/db/ -rw-r--r-- root/root 291984 2018-10-15 13:41 ./usr/lib/debug/.build-id/db/3bcd553fe88df8b2137ccbf5ff5fbdd71850d4.debug drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/debug/.build-id/ed/ -rw-r--r-- root/root 170988 2018-10-15 13:41 ./usr/lib/debug/.build-id/ed/98092463a1855dbce6ecd5eb20eb34563850e7.debug drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/debug/.build-id/f2/ -rw-r--r-- root/root 188368 2018-10-15 13:41 ./usr/lib/debug/.build-id/f2/b372e3e594e47f678a35ca07c3fd756ed99fec.debug drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-10-15 13:41 ./usr/share/doc/anfo-dbgsym -> anfo anfo_0.98-7_mipsel.deb ---------------------- new Debian package, version 2.0. size 116344 bytes: control archive=1500 bytes. 869 bytes, 16 lines control 1508 bytes, 24 lines md5sums Package: anfo Version: 0.98-7 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 429 Depends: libanfo0, libbz2-1.0, libc6 (>= 2.27), libelk0, libgcc1 (>= 1:4.2), libpopt0 (>= 1.14), libprotobuf17, libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: http://bioinf.eva.mpg.de/anfo/ Description: Short Read Aligner/Mapper from MPG Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead). drwxr-xr-x root/root 0 2018-10-15 13:41 ./ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/bin/ -rwxr-xr-x root/root 44436 2018-10-15 13:41 ./usr/bin/anfo -rwxr-xr-x root/root 157396 2018-10-15 13:41 ./usr/bin/anfo-tool -rwxr-xr-x root/root 52060 2018-10-15 13:41 ./usr/bin/dnaindex -rwxr-xr-x root/root 35596 2018-10-15 13:41 ./usr/bin/fa2dna drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/anfo/ -rwxr-xr-x root/root 18908 2018-10-15 13:41 ./usr/lib/anfo/file-info -rwxr-xr-x root/root 39812 2018-10-15 13:41 ./usr/lib/anfo/index-test drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/anfo/ -rw-r--r-- root/root 6784 2018-10-15 13:41 ./usr/share/anfo/config.proto -rw-r--r-- root/root 14546 2018-10-15 13:41 ./usr/share/anfo/output.proto drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/doc/anfo/ -rw-r--r-- root/root 909 2018-10-15 13:41 ./usr/share/doc/anfo/README.Debian -rw-r--r-- root/root 2441 2018-10-15 13:41 ./usr/share/doc/anfo/README.gz -rw-r--r-- root/root 1006 2018-10-15 13:41 ./usr/share/doc/anfo/changelog.Debian.gz -rw-r--r-- root/root 2550 2018-10-15 13:41 ./usr/share/doc/anfo/copyright drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/doc/anfo/example/ -rw-r--r-- root/root 1807 2018-10-15 13:41 ./usr/share/doc/anfo/example/ancient.cfg -rw-r--r-- root/root 2056 2018-10-15 13:41 ./usr/share/doc/anfo/example/default.cfg -rw-r--r-- root/root 521 2018-10-15 13:41 ./usr/share/doc/anfo/example/split-anfo.scm -rw-r--r-- root/root 567 2018-10-15 13:41 ./usr/share/doc/anfo/example/threebam.scm drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/elk/ -rw-r--r-- root/root 9714 2018-10-15 13:41 ./usr/share/elk/anfo.scm -rw-r--r-- root/root 2593 2018-10-15 13:41 ./usr/share/elk/srfi-88.scm -rw-r--r-- root/root 12138 2018-10-15 13:41 ./usr/share/elk/srfi-89.scm drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/man/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/man/man1/ -rw-r--r-- root/root 4029 2018-10-15 13:41 ./usr/share/man/man1/anfo-tool.1.gz -rw-r--r-- root/root 1616 2018-10-15 13:41 ./usr/share/man/man1/anfo.1.gz -rw-r--r-- root/root 1684 2018-10-15 13:41 ./usr/share/man/man1/dnaindex.1.gz -rw-r--r-- root/root 1202 2018-10-15 13:41 ./usr/share/man/man1/fa2dna.1.gz -rw-r--r-- root/root 634 2018-10-15 13:41 ./usr/share/man/man1/file-info.1.gz libanfo0-dbgsym_0.98-7_mipsel.deb --------------------------------- new Debian package, version 2.0. size 3570144 bytes: control archive=536 bytes. 370 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libanfo0-dbgsym Source: anfo Version: 0.98-7 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 3666 Depends: libanfo0 (= 0.98-7) Section: debug Priority: optional Description: debug symbols for libanfo0 Build-Ids: 723fc12a84133a05933b6730f44e66f5a7e65ceb drwxr-xr-x root/root 0 2018-10-15 13:41 ./ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/debug/.build-id/72/ -rw-r--r-- root/root 3743400 2018-10-15 13:41 ./usr/lib/debug/.build-id/72/3fc12a84133a05933b6730f44e66f5a7e65ceb.debug drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-10-15 13:41 ./usr/share/doc/libanfo0-dbgsym -> libanfo0 libanfo0-dev_0.98-7_mipsel.deb ------------------------------ new Debian package, version 2.0. size 372716 bytes: control archive=1404 bytes. 1008 bytes, 22 lines control 1163 bytes, 18 lines md5sums Package: libanfo0-dev Source: anfo Version: 0.98-7 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 2018 Depends: libanfo0 (= 0.98-7), libbz2-dev, libelk0-dev, libpopt-dev, libprotobuf-dev, zlib1g-dev Conflicts: libanfo-dev Provides: libanfo-dev Section: libdevel Priority: optional Homepage: http://bioinf.eva.mpg.de/anfo/ Description: Development files for Short Read Aligner/Mapper from MPG Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead). . This package contains the development files that might be used in connection with the anfo binaries. drwxr-xr-x root/root 0 2018-10-15 13:41 ./ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/include/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/include/anfo/ -rw-r--r-- root/root 14361 2018-10-15 13:41 ./usr/include/anfo/align.h -rw-r--r-- root/root 2595 2018-10-15 13:41 ./usr/include/anfo/align_fwd.h -rw-r--r-- root/root 3399 2018-10-15 13:41 ./usr/include/anfo/anfo_common.h -rw-r--r-- root/root 11973 2018-10-15 13:41 ./usr/include/anfo/compress_stream.h -rw-r--r-- root/root 4906 2018-10-15 13:41 ./usr/include/anfo/concurrent_stream.h -rw-r--r-- root/root 2979 2018-10-15 13:41 ./usr/include/anfo/conffile.h -rw-r--r-- root/root 5051 2018-10-15 13:41 ./usr/include/anfo/ducttape.h -rw-r--r-- root/root 17630 2018-10-15 13:41 ./usr/include/anfo/index.h -rw-r--r-- root/root 5881 2018-10-15 13:41 ./usr/include/anfo/logdom.h -rw-r--r-- root/root 22028 2018-10-15 13:41 ./usr/include/anfo/misc_streams.h -rw-r--r-- root/root 5942 2018-10-15 13:41 ./usr/include/anfo/output_streams.h -rw-r--r-- root/root 14774 2018-10-15 13:41 ./usr/include/anfo/sequence.h -rw-r--r-- root/root 30889 2018-10-15 13:41 ./usr/include/anfo/stream.h -rw-r--r-- root/root 5292 2018-10-15 13:41 ./usr/include/anfo/trim.h -rw-r--r-- root/root 9473 2018-10-15 13:41 ./usr/include/anfo/util.h drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/mipsel-linux-gnu/ -rw-r--r-- root/root 1885230 2018-10-15 13:41 ./usr/lib/mipsel-linux-gnu/libanfo.a lrwxrwxrwx root/root 0 2018-10-15 13:41 ./usr/lib/mipsel-linux-gnu/libanfo.so -> libanfo.so.0.0.0 drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/doc/libanfo0-dev/ -rw-r--r-- root/root 1006 2018-10-15 13:41 ./usr/share/doc/libanfo0-dev/changelog.Debian.gz -rw-r--r-- root/root 2550 2018-10-15 13:41 ./usr/share/doc/libanfo0-dev/copyright libanfo0_0.98-7_mipsel.deb -------------------------- new Debian package, version 2.0. size 242732 bytes: control archive=1084 bytes. 955 bytes, 19 lines control 220 bytes, 3 lines md5sums 19 bytes, 1 lines shlibs 67 bytes, 2 lines triggers Package: libanfo0 Source: anfo Version: 0.98-7 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 1038 Depends: libbz2-1.0, libc6 (>= 2.27), libelk0, libgcc1 (>= 1:4.2), libpopt0 (>= 1.14), libprotobuf17, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Section: libs Priority: optional Homepage: http://bioinf.eva.mpg.de/anfo/ Description: Library for Short Read Aligner/Mapper from MPG Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead). . This package contains the dynamic library for the anfo binaries. drwxr-xr-x root/root 0 2018-10-15 13:41 ./ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/lib/mipsel-linux-gnu/ lrwxrwxrwx root/root 0 2018-10-15 13:41 ./usr/lib/mipsel-linux-gnu/libanfo.so.0 -> libanfo.so.0.0.0 -rw-r--r-- root/root 1047152 2018-10-15 13:41 ./usr/lib/mipsel-linux-gnu/libanfo.so.0.0.0 drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-15 13:41 ./usr/share/doc/libanfo0/ -rw-r--r-- root/root 1006 2018-10-15 13:41 ./usr/share/doc/libanfo0/changelog.Debian.gz -rw-r--r-- root/root 2550 2018-10-15 13:41 ./usr/share/doc/libanfo0/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 113480 Build-Time: 212 Distribution: unstable Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 24 Job: anfo_0.98-7 Lintian: pass Machine Architecture: amd64 Package: anfo Package-Time: 245 Source-Version: 0.98-7 Space: 113480 Status: successful Version: 0.98-7 -------------------------------------------------------------------------------- Finished at 2019-03-26T08:55:36Z Build needed 00:04:05, 113480k disk space