sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | anfo 0.98-8 (s390x) Wed, 02 Dec 2020 16:46:11 +0000 | +==============================================================================+ Package: anfo Version: 0.98-8 Source Version: 0.98-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-1ba7cca9-8668-44f5-8ea6-79de425c36bf' with '<>' I: NOTICE: Log filtering will replace 'build/anfo-1IsFu3/resolver-SPNgTG' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [37.0 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [37.0 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-02-0804.08.pdiff [4029 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-02-1406.36.pdiff [20.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-02-1406.36.pdiff [20.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-02-0804.08.pdiff [4602 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-02-1406.36.pdiff [17.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-02-1406.36.pdiff [17.2 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main s390x Packages [8192 kB] Fetched 8459 kB in 2s (5275 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'anfo' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/anfo.git Please use: git clone https://salsa.debian.org/med-team/anfo.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 472 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main anfo 0.98-8 (dsc) [2145 B] Get:2 http://debian.oregonstate.edu/debian unstable/main anfo 0.98-8 (tar) [462 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main anfo 0.98-8 (diff) [7752 B] Fetched 472 kB in 0s (27.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/anfo-1IsFu3/anfo-0.98' with '<>' I: NOTICE: Log filtering will replace 'build/anfo-1IsFu3' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs (>= 0.77), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs (>= 0.77), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [464 B] Get:5 copy:/<>/apt_archive ./ Packages [553 B] Fetched 1974 B in 0s (79.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbsd0 libbsd0:s390x libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf-dev:s390x libelf1 libelf1:s390x libelk0:s390x libelk0-dev:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2 libgssapi-krb5-2:s390x libice-dev:s390x libice6:s390x libicu67 libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3 libk5crypto3:s390x libkeyutils1 libkeyutils1:s390x libkrb5-3 libkrb5-3:s390x libkrb5support0 libkrb5support0:s390x liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:s390x libnsl2 libnsl2:s390x libperl5.32 libpipeline1 libpopt-dev:s390x libpopt0:s390x libprotobuf-dev:s390x libprotobuf-lite23:s390x libprotobuf23 libprotobuf23:s390x libprotoc23 libpthread-stubs0-dev libpthread-stubs0-dev:s390x libsigsegv2 libsm-dev:s390x libsm6:s390x libssl1.1 libssl1.1:s390x libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtirpc-common libtirpc-dev libtirpc-dev:s390x libtirpc3 libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libuuid1:s390x libx11-6 libx11-6:s390x libx11-data libx11-dev libx11-dev:s390x libxau-dev libxau-dev:s390x libxau6 libxau6:s390x libxcb1 libxcb1:s390x libxcb1-dev libxcb1-dev:s390x libxdmcp-dev libxdmcp-dev:s390x libxdmcp6 libxdmcp6:s390x libxext-dev:s390x libxext6:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu-dev:s390x libxmu-headers libxmu6:s390x libxt-dev:s390x libxt6:s390x libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.32 pkg-config po-debconf protobuf-compiler sensible-utils ucf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-s390x-linux-gnu gcc-10-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x glibc-doc manpages-dev:s390x gnupg git bzr krb5-doc krb5-user krb5-doc:s390x krb5-user:s390x libice-doc:s390x libsm-doc:s390x libstdc++-10-doc libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libx11-doc:s390x libxcb-doc libxcb-doc:s390x libxext-doc:s390x libxt-doc:s390x libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl protobuf-mode-el Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx bzip2-doc:s390x libidn2-0:s390x libnss-nis:s390x libnss-nisplus:s390x libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales krb5-locales:s390x libltdl-dev uuid-runtime:s390x libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl libprotobuf-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbsd0 libbsd0:s390x libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf-dev:s390x libelf1 libelf1:s390x libelk0:s390x libelk0-dev:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2 libgssapi-krb5-2:s390x libice-dev:s390x libice6:s390x libicu67 libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3 libk5crypto3:s390x libkeyutils1 libkeyutils1:s390x libkrb5-3 libkrb5-3:s390x libkrb5support0 libkrb5support0:s390x liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:s390x libnsl2 libnsl2:s390x libperl5.32 libpipeline1 libpopt-dev:s390x libpopt0:s390x libprotobuf-dev:s390x libprotobuf-lite23:s390x libprotobuf23 libprotobuf23:s390x libprotoc23 libpthread-stubs0-dev libpthread-stubs0-dev:s390x libsigsegv2 libsm-dev:s390x libsm6:s390x libssl1.1 libssl1.1:s390x libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtirpc-common libtirpc-dev libtirpc-dev:s390x libtirpc3 libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libuuid1:s390x libx11-6 libx11-6:s390x libx11-data libx11-dev libx11-dev:s390x libxau-dev libxau-dev:s390x libxau6 libxau6:s390x libxcb1 libxcb1:s390x libxcb1-dev libxcb1-dev:s390x libxdmcp-dev libxdmcp-dev:s390x libxdmcp6 libxdmcp6:s390x libxext-dev:s390x libxext6:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu-dev:s390x libxmu-headers libxmu6:s390x libxt-dev:s390x libxt6:s390x libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.32 pkg-config po-debconf protobuf-compiler sbuild-build-depends-main-dummy:s390x sensible-utils ucf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 178 newly installed, 0 to remove and 0 not upgraded. Need to get 248 MB of archives. After this operation, 1057 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [976 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-2 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.0-5 [2821 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.0-5 [4119 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.0-5 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main s390x gcc-10-base s390x 10.2.0-19 [200 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.3.0-19 [198 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-1 [814 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.35.1-3 [1982 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.18.3-4 [65.1 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.18.3-4 [113 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1h-1 [1550 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.18.3-4 [362 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.18.3-4 [165 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-common all 1.2.6-3 [13.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc3 amd64 1.2.6-3 [83.4 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.2.6-3 [190 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-5 [2342 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-19 [1741 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-19 [44.7 MB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu-base amd64 10.2.0-19cross1 [200 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-s390x-linux-gnu amd64 10.2.0-19cross1 [41.1 MB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:10.2.0-1 [16.8 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.0-19cross1 [197 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.31-1cross2 [1254 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-s390x-cross all 10.2.0-19cross1 [24.7 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 10.2.0-19cross1 [90.5 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 10.2.0-19cross1 [24.9 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 10.2.0-19cross1 [7952 B] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-s390x-cross all 10.2.0-19cross1 [293 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 10.2.0-19cross1 [442 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 10.2.0-19cross1 [124 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-s390x-cross all 10.2.0-19cross1 [661 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu amd64 10.2.0-19cross1 [46.3 MB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:10.2.0-1 [1452 B] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.7.6-1cross2 [1228 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.31-1cross2 [1990 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-s390x-cross all 10.2.0-19cross1 [1684 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-s390x-linux-gnu amd64 10.2.0-19cross1 [44.1 MB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:10.2.0-1 [1176 B] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3 [693 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.8 [6636 B] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.95 [17.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.182-1 [166 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.3-1 [1364 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 10.2.0-19 [24.6 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.17-1 [87.3 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.31-5 [2440 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.3.0-19 [344 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 10.2.0-19 [8100 B] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main s390x libbsd0 s390x 0.10.0-1 [105 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-1.0 s390x 1.0.8-4 [45.9 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.9.11-1 [1229 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.17-1 [105 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main s390x libcom-err2 s390x 1.45.6-1 [71.6 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5support0 s390x 1.18.3-4 [64.3 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main s390x libk5crypto3 s390x 1.18.3-4 [112 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main s390x libkeyutils1 s390x 1.6.1-2 [15.2 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main s390x libssl1.1 s390x 1.1.1h-1 [1210 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5-3 s390x 1.18.3-4 [340 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main s390x libgssapi-krb5-2 s390x 1.18.3-4 [153 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main s390x libtirpc3 s390x 1.2.6-3 [77.5 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main s390x libnsl2 s390x 1.3.0-2 [37.3 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main s390x libtirpc-dev s390x 1.2.6-3 [185 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main s390x libnsl-dev s390x 1.3.0-2 [64.6 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.31-5 [1967 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-dev s390x 1.0.8-4 [30.2 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-2 [88.9 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main s390x libelf1 s390x 0.182-1 [163 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2 [189 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main s390x libelf-dev s390x 0.182-1 [72.6 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+21 [252 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main s390x libice6 s390x 2:1.0.10-1 [54.8 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main s390x libuuid1 s390x 2.36.1-2 [82.8 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main s390x libsm6 s390x 2:1.2.3-1 [34.2 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main s390x libxau6 s390x 1:1.0.8-1+b2 [19.8 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main s390x libxdmcp6 s390x 1:1.1.2-3 [26.5 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main s390x libxcb1 s390x 1.14-2 [137 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.12-1 [311 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main s390x libx11-6 s390x 2:1.6.12-1 [736 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main s390x libxext6 s390x 2:1.3.3-1+b2 [51.7 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main s390x libxt6 s390x 1:1.2.0-1 [174 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main s390x libxmu6 s390x 2:1.1.2-2+b3 [57.4 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main s390x libelk0 s390x 3.99.8-4.2+b1 [169 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2020.1-1 [594 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2020.1-1 [3404 B] Get:141 http://debian.oregonstate.edu/debian unstable/main s390x libxau-dev s390x 1:1.0.8-1+b2 [23.1 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main s390x libxdmcp-dev s390x 1:1.1.2-3 [42.3 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main s390x libpthread-stubs0-dev s390x 0.4-1 [5344 B] Get:145 http://debian.oregonstate.edu/debian unstable/main s390x libxcb1-dev s390x 1.14-2 [174 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main s390x libx11-dev s390x 2:1.6.12-1 [807 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2020.1-1 [3404 B] Get:148 http://debian.oregonstate.edu/debian unstable/main s390x libxext-dev s390x 2:1.3.3-1+b2 [106 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main s390x libice-dev s390x 2:1.0.10-1 [63.5 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main s390x libsm-dev s390x 2:1.2.3-1 [37.2 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main s390x libxt-dev s390x 1:1.2.0-1 [395 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.14-2 [139 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.12-1 [770 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get:159 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1-dev amd64 1.14-2 [176 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-dev amd64 2:1.6.12-1 [842 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu-headers all 2:1.1.2-2 [51.9 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main s390x libxmu-dev s390x 2:1.1.2-2+b3 [63.4 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main s390x libelk0-dev s390x 3.99.8-4.2+b1 [198 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 10.2.0-19 [92.4 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 10.2.0-19 [25.3 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 10.2.0-19 [485 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 10.2.0-19 [125 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.3.0-19 [682 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main s390x libpopt0 s390x 1.18-2 [48.1 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main s390x libpopt-dev s390x 1.18-2 [53.9 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main s390x libprotobuf23 s390x 3.12.3-2+b1 [807 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main s390x libprotobuf-lite23 s390x 3.12.3-2+b1 [220 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main s390x libprotobuf-dev s390x 3.12.3-2+b1 [1125 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main amd64 libprotobuf23 amd64 3.12.3-2+b1 [901 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main amd64 libprotoc23 amd64 3.12.3-2+b1 [804 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.3.0-19 [1668 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main amd64 protobuf-compiler amd64 3.12.3-2+b1 [75.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 248 MB in 2s (117 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10437 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-2_amd64.deb ... Unpacking bsdextrautils (2.36.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.0-5_all.deb ... Unpacking perl-modules-5.32 (5.32.0-5) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../006-libperl5.32_5.32.0-5_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.0-5) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.32.0-5_amd64.deb ... Unpacking perl (5.32.0-5) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-10-base:s390x. Preparing to unpack .../009-gcc-10-base_10.2.0-19_s390x.deb ... Unpacking gcc-10-base:s390x (10.2.0-19) ... Selecting previously unselected package gcc-9-base:s390x. Preparing to unpack .../010-gcc-9-base_9.3.0-19_s390x.deb ... Unpacking gcc-9-base:s390x (9.3.0-19) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../011-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../012-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../013-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../014-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../015-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../016-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../017-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.3-1_all.deb ... Unpacking automake (1:1.16.3-1) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package binutils-s390x-linux-gnu. Preparing to unpack .../023-binutils-s390x-linux-gnu_2.35.1-3_amd64.deb ... Unpacking binutils-s390x-linux-gnu (2.35.1-3) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../024-libcrypt-dev_1%3a4.4.17-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.17-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../025-libkrb5support0_1.18.3-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.18.3-4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../026-libk5crypto3_1.18.3-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.18.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../027-libkeyutils1_1.6.1-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.1-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../028-libssl1.1_1.1.1h-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1h-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../029-libkrb5-3_1.18.3-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.18.3-4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../030-libgssapi-krb5-2_1.18.3-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.18.3-4) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../031-libtirpc-common_1.2.6-3_all.deb ... Unpacking libtirpc-common (1.2.6-3) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../032-libtirpc3_1.2.6-3_amd64.deb ... Unpacking libtirpc3:amd64 (1.2.6-3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../033-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../034-libtirpc-dev_1.2.6-3_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.2.6-3) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../035-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../036-libc6-dev_2.31-5_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-5) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../037-libstdc++-10-dev_10.2.0-19_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.0-19) ... Selecting previously unselected package g++-10. Preparing to unpack .../038-g++-10_10.2.0-19_amd64.deb ... Unpacking g++-10 (10.2.0-19) ... Selecting previously unselected package g++. Preparing to unpack .../039-g++_4%3a10.2.0-1_amd64.deb ... Unpacking g++ (4:10.2.0-1) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../040-libdpkg-perl_1.20.5_all.deb ... Unpacking libdpkg-perl (1.20.5) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../041-dpkg-dev_1.20.5_all.deb ... Unpacking dpkg-dev (1.20.5) ... Selecting previously unselected package build-essential. Preparing to unpack .../042-build-essential_12.8_amd64.deb ... Unpacking build-essential (12.8) ... Selecting previously unselected package gcc-10-s390x-linux-gnu-base:amd64. Preparing to unpack .../043-gcc-10-s390x-linux-gnu-base_10.2.0-19cross1_amd64.deb ... Unpacking gcc-10-s390x-linux-gnu-base:amd64 (10.2.0-19cross1) ... Selecting previously unselected package cpp-10-s390x-linux-gnu. Preparing to unpack .../044-cpp-10-s390x-linux-gnu_10.2.0-19cross1_amd64.deb ... Unpacking cpp-10-s390x-linux-gnu (10.2.0-19cross1) ... Selecting previously unselected package cpp-s390x-linux-gnu. Preparing to unpack .../045-cpp-s390x-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking cpp-s390x-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../046-cross-config_2.6.15-3.1_all.deb ... Unpacking cross-config (2.6.15-3.1) ... Selecting previously unselected package gcc-10-cross-base. 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Setting up libkeyutils1:amd64 (1.6.1-2) ... Setting up binutils-s390x-linux-gnu (2.35.1-3) ... Setting up bsdextrautils (2.36.1-2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-4) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libglib2.0-0:amd64 (2.66.3-1) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1h-1) ... Setting up libtirpc-common (1.2.6-3) ... Setting up perl-modules-5.32 (5.32.0-5) ... Setting up libc6-s390x-cross (2.31-1cross2) ... Setting up x11-common (1:7.7+21) ... invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:s390x (5.9.11-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up libprotobuf23:amd64 (3.12.3-2+b1) ... Setting up file (1:5.39-3) ... 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Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up x11proto-xext-dev (2020.1-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up cpp-10-s390x-linux-gnu (10.2.0-19cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libx11-6:amd64 (2:1.6.12-1) ... Setting up automake (1:1.16.3-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libtirpc3:amd64 (1.2.6-3) ... Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libxcb1-dev:amd64 (1.14-2) ... Setting up cpp-s390x-linux-gnu (4:10.2.0-1) ... Setting up libstdc++6-s390x-cross (10.2.0-19cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.2.1) ... Setting up libx11-dev:amd64 (2:1.6.12-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up libasan6-s390x-cross (10.2.0-19cross1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libtirpc-dev:amd64 (1.2.6-3) ... Setting up pkg-config (0.29.2-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libxmu-headers (2:1.1.2-2) ... Setting up libubsan1-s390x-cross (10.2.0-19cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-10-dev-s390x-cross (10.2.0-19cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.31-5) ... Setting up libstdc++-10-dev:amd64 (10.2.0-19) ... Setting up libstdc++-10-dev-s390x-cross (10.2.0-19cross1) ... Setting up g++-10 (10.2.0-19) ... Setting up libtool (2.4.6-14) ... Setting up gcc-10-s390x-linux-gnu (10.2.0-19cross1) ... Setting up gcc-s390x-linux-gnu (4:10.2.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up g++-10-s390x-linux-gnu (10.2.0-19cross1) ... Setting up build-essential (12.8) ... Setting up g++-s390x-linux-gnu (4:10.2.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-s390x (12.8) ... Setting up libcrypt1:s390x (1:4.4.17-1) ... Setting up libgcc-s1:s390x (10.2.0-19) ... Setting up dh-autoreconf (19) ... Setting up libc6:s390x (2.31-5) ... Setting up libcrypt-dev:s390x (1:4.4.17-1) ... Setting up libbz2-1.0:s390x (1.0.8-4) ... Setting up libbsd0:s390x (0.10.0-1) ... Setting up libstdc++6:s390x (10.2.0-19) ... Setting up libitm1:s390x (10.2.0-19) ... Setting up libpopt0:s390x (1.18-2) ... Setting up libice6:s390x (2:1.0.10-1) ... Setting up libxau6:s390x (1:1.0.8-1+b2) ... Setting up libxdmcp6:s390x (1:1.1.2-3) ... Setting up libkeyutils1:s390x (1.6.1-2) ... Setting up libxcb1:s390x (1.14-2) ... Setting up libxau-dev:s390x (1:1.0.8-1+b2) ... Setting up libice-dev:s390x (2:1.0.10-1) ... Setting up libssl1.1:s390x (1.1.1h-1) ... Setting up debhelper (13.2.1) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-2) ... Setting up libprotobuf23:s390x (3.12.3-2+b1) ... Setting up libcom-err2:s390x (1.45.6-1) ... Setting up libgomp1:s390x (10.2.0-19) ... Setting up libkrb5support0:s390x (1.18.3-4) ... Setting up libasan5:s390x (9.3.0-19) ... Setting up libxdmcp-dev:s390x (1:1.1.2-3) ... Setting up libprotobuf-lite23:s390x (3.12.3-2+b1) ... Setting up libatomic1:s390x (10.2.0-19) ... Setting up libuuid1:s390x (2.36.1-2) ... Setting up libk5crypto3:s390x (1.18.3-4) ... Setting up libubsan1:s390x (10.2.0-19) ... Setting up libx11-6:s390x (2:1.6.12-1) ... Setting up libkrb5-3:s390x (1.18.3-4) ... Setting up libelf1:s390x (0.182-1) ... Setting up libsm6:s390x (2:1.2.3-1) ... Setting up libxcb1-dev:s390x (1.14-2) ... Setting up libsm-dev:s390x (2:1.2.3-1) ... Setting up libx11-dev:s390x (2:1.6.12-1) ... Setting up libxext6:s390x (2:1.3.3-1+b2) ... Setting up libgcc-9-dev:s390x (9.3.0-19) ... Setting up libgssapi-krb5-2:s390x (1.18.3-4) ... Setting up libxt6:s390x (1:1.2.0-1) ... Setting up libxext-dev:s390x (2:1.3.3-1+b2) ... Setting up libtirpc3:s390x (1.2.6-3) ... Setting up libxmu6:s390x (2:1.1.2-2+b3) ... Setting up libtirpc-dev:s390x (1.2.6-3) ... Setting up libxt-dev:s390x (1:1.2.0-1) ... Setting up libelk0:s390x (3.99.8-4.2+b1) ... Setting up libnsl2:s390x (1.3.0-2) ... Setting up libxmu-dev:s390x (2:1.1.2-2+b3) ... Setting up libnsl-dev:s390x (1.3.0-2) ... Setting up libc6-dev:s390x (2.31-5) ... Setting up libbz2-dev:s390x (1.0.8-4) ... Setting up libstdc++-9-dev:s390x (9.3.0-19) ... Setting up libpopt-dev:s390x (1.18-2) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-2) ... Setting up libprotobuf-dev:s390x (3.12.3-2+b1) ... Setting up libelf-dev:s390x (0.182-1) ... Setting up libelk0-dev:s390x (3.99.8-4.2+b1) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.31-5) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-3 dpkg-dev_1.20.5 g++-10_10.2.0-19 gcc-10_10.2.0-19 libc6-dev_2.31-5 libstdc++-10-dev_10.2.0-19 libstdc++-10-dev-s390x-cross_10.2.0-19cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.0-19 libstdc++6-s390x-cross_10.2.0-19cross1 linux-libc-dev_5.9.11-1 Package versions: adduser_3.118 apt_2.1.12 autoconf_2.69-11.1 automake_1:1.16.3-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.48 bash_5.1~rc3-1 binutils_2.35.1-3 binutils-common_2.35.1-3 binutils-s390x-linux-gnu_2.35.1-3 binutils-x86-64-linux-gnu_2.35.1-3 bsdextrautils_2.36.1-2 bsdutils_1:2.36.1-2 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.0-19 cpp-10-s390x-linux-gnu_10.2.0-19cross1 cpp-8_8.4.0-5 cpp-s390x-linux-gnu_4:10.2.0-1 cross-config_2.6.15-3.1 crossbuild-essential-s390x_12.8 d-shlibs_0.95 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-2 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1 g++-10_10.2.0-19 g++-10-s390x-linux-gnu_10.2.0-19cross1 g++-s390x-linux-gnu_4:10.2.0-1 gcc_4:10.2.0-1 gcc-10_10.2.0-19 gcc-10-base_10.2.0-19 gcc-10-cross-base_10.2.0-19cross1 gcc-10-s390x-linux-gnu_10.2.0-19cross1 gcc-10-s390x-linux-gnu-base_10.2.0-19cross1 gcc-8-base_8.4.0-5 gcc-9-base_9.3.0-19 gcc-s390x-linux-gnu_4:10.2.0-1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.59 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.12 libarchive-zip-perl_1.68-1 libasan5_9.3.0-19 libasan6_10.2.0-19 libasan6-s390x-cross_10.2.0-19cross1 libatomic1_10.2.0-19 libatomic1-s390x-cross_10.2.0-19cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-3 libblkid1_2.36.1-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-5 libc-dev-bin_2.31-5 libc6_2.31-5 libc6-dev_2.31-5 libc6-dev-s390x-cross_2.31-1cross2 libc6-s390x-cross_2.31-1cross2 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.0-19 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-3 libctf0_2.35.1-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdebian-dpkgcross-perl_2.6.15-3.1 libdpkg-perl_1.20.5 libelf-dev_0.182-1 libelf1_0.182-1 libelk0_3.99.8-4.2+b1 libelk0-dev_3.99.8-4.2+b1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-2 libffi6_3.2.1-9 libffi7_3.3-5 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.0-19 libgcc-10-dev-s390x-cross_10.2.0-19cross1 libgcc-9-dev_9.3.0-19 libgcc-s1_10.2.0-19 libgcc-s1-s390x-cross_10.2.0-19cross1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.3-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.6.15-4 libgomp1_10.2.0-19 libgomp1-s390x-cross_10.2.0-19cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libice-dev_2:1.0.10-1 libice6_2:1.0.10-1 libicu67_67.1-4 libidn2-0_2.3.0-4 libio-string-perl_1.08-3 libisl19_0.20-2 libisl23_0.23-1 libitm1_10.2.0-19 libitm1-s390x-cross_10.2.0-19cross1 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.0-19 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-5 libncursesw6_6.2+20201114-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpopt-dev_1.18-2 libpopt0_1.18-2 libprotobuf-dev_3.12.3-2+b1 libprotobuf-lite23_3.12.3-2+b1 libprotobuf23_3.12.3-2+b1 libprotoc23_3.12.3-2+b1 libpthread-stubs0-dev_0.4-1 libquadmath0_10.2.0-19 libseccomp2_2.5.0-3 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.36.1-2 libss2_1.45.6-1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-19 libstdc++-10-dev-s390x-cross_10.2.0-19cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.0-19 libstdc++6-s390x-cross_10.2.0-19cross1 libsub-override-perl_0.09-2 libsystemd0_246.6-5 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libtsan0_10.2.0-19 libubsan1_10.2.0-19 libubsan1-s390x-cross_10.2.0-19cross1 libuchardet0_0.0.7-1 libudev1_246.6-5 libunistring2_0.9.10-4 libuuid1_2.36.1-2 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libx11-dev_2:1.6.12-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2 libxcb1-dev_1.14-2 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6.3 libxmu-dev_2:1.1.2-2+b3 libxmu-headers_2:1.1.2-2 libxmu6_2:1.1.2-2+b3 libxt-dev_1:1.2.0-1 libxt6_1:1.2.0-1 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.9.11-1 linux-libc-dev-s390x-cross_5.7.6-1cross2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-2 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.0-5 pkg-config_0.29.2-1 po-debconf_1.0.21 protobuf-compiler_3.12.3-2+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1 tzdata_2020d-1 ucf_3.0043 util-linux_2.36.1-2 x11-common_1:7.7+21 x11proto-core-dev_2020.1-1 x11proto-dev_2020.1-1 x11proto-xext-dev_2020.1-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.4.0-1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: anfo Binary: anfo, libanfo0, libanfo0-dev Architecture: any Version: 0.98-8 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://bioinf.eva.mpg.de/anfo/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/anfo Vcs-Git: https://salsa.debian.org/med-team/anfo.git Build-Depends: debhelper-compat (= 13), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs (>= 0.77) Package-List: anfo deb science optional arch=any libanfo0 deb libs optional arch=any libanfo0-dev deb libdevel optional arch=any Checksums-Sha1: df0dc3bd6ac455e86cf66628434ac1587336c14c 462359 anfo_0.98.orig.tar.gz ca0358964531fa157d41bbacc4dbad1c5049765a 7752 anfo_0.98-8.debian.tar.xz Checksums-Sha256: fdd7bfb6467872f4b9f3a3a19310f73154345689751fd965b1f4418ee0f740e7 462359 anfo_0.98.orig.tar.gz 8d8f34387834c167b37bf79a3224117ecafb797414949324b9b5e91bea4248e9 7752 anfo_0.98-8.debian.tar.xz Files: 17398d931375f0be94cf5543739733b8 462359 anfo_0.98.orig.tar.gz 3027ef58a8952b225ce31a5e58ab8d67 7752 anfo_0.98-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl++q5gRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHDyg/+IuN6zOXUKNbUsqjfD0nKDi0LofHSmJ4S kXLWaB4ro0Ism1bLVjvr73IgWKjZTEX5n4+G+vMX1IGaIJ23urvb+RAJ7wsYAtyo sV+x0zk4quQ+l+EowxSat0HofQrDz+lpUwThA0ZMeRkZU0amDI5j1/VfZYx6Wxwi p3XMCTIugi11a8oBDrEt7Gk3BFKqPLqZB2MIrmzIPgNzuz59IyXkXzcJQBY8Lap2 iPrgrm9i4SlfHWSwYzZvl6NFgxd5FOF3Wpi6j0ntVlxYLVOVXyakB3DN2BiZgrjk 1Yiug1GtIQHNRk7cTP+wYS12evjLl16osWA8UyIlYqBq7eeu9zzyRaqbdr7QSqtJ RSQjqd9V6M38BnrfoBTYUjcHA6hJFxOwbpBZFK+GOY75dtr8SzqT44YfNyCz1hJ3 Cu4dU/igEe6rk/PlhDnKhnNozYEHGAH9p5xLSqQ+7FVmpua8a2ocn9tiownDRs6j Kru0iMLzfROkclJKfiYicB2IfkueYsPYTYxJoLNbEVUXUF1tSo4X5J0JD+A2ioA8 3YtmEpMm65EXFi7vpwr6QxGH1b+N9BUo4+MwnzBTfvYSaOMCzWusRgcuILr2gjdx WMGRtcGskc7+xA1SxQyNTrXzGnlPlJpJVBJKVdaK+ZRNveaPBW4YbEqO/X66BME/ MGPyJJyp7Y8= =Wnh5 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.K1XEa51G/trustedkeys.kbx': General error gpgv: Signature made Wed Nov 25 19:08:08 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./anfo_0.98-8.dsc dpkg-source: info: extracting anfo in /<> dpkg-source: info: unpacking anfo_0.98.orig.tar.gz dpkg-source: info: unpacking anfo_0.98-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01-silence-narrowing-conversion.patch dpkg-source: info: applying 02-correct-minscore-self-initialization.patch dpkg-source: info: applying 03-include-unistd-forF_OK.patch dpkg-source: info: applying 04-reorder-template-for-new-scope-rules.patch dpkg-source: info: applying 05-autoreconf.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-1ba7cca9-8668-44f5-8ea6-79de425c36bf SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package anfo dpkg-buildpackage: info: source version 0.98-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/anfo.substvars debian/libanfo0.substvars debian/libanfo0-dev.substvars debian/files rm -fr -- debian/anfo/ debian/tmp/ debian/libanfo0/ debian/libanfo0-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a install -d debian/.debhelper/bucket/files cp -an --reflink=auto config.guess debian/.debhelper/bucket/files/57cc3642a532babb5ec0db80ebefd7ad7dc2b110e85bdc438fe67221e6172a3f.tmp mv debian/.debhelper/bucket/files/57cc3642a532babb5ec0db80ebefd7ad7dc2b110e85bdc438fe67221e6172a3f.tmp debian/.debhelper/bucket/files/57cc3642a532babb5ec0db80ebefd7ad7dc2b110e85bdc438fe67221e6172a3f cp -f /usr/share/misc/config.guess ./config.guess cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/76dae42e342b050c73d63a4c398703beecd0915d5350e8d667abcf0f746be6e2.tmp mv debian/.debhelper/bucket/files/76dae42e342b050c73d63a4c398703beecd0915d5350e8d667abcf0f746be6e2.tmp debian/.debhelper/bucket/files/76dae42e342b050c73d63a4c398703beecd0915d5350e8d667abcf0f746be6e2 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:77: warning: LT_INIT was called before AM_PROG_AR /usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR /usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from... configure.ac:77: the top level aclocal: overwriting 'm4/libtool.m4' with '/usr/share/aclocal/libtool.m4' aclocal: overwriting 'm4/ltoptions.m4' with '/usr/share/aclocal/ltoptions.m4' aclocal: overwriting 'm4/ltversion.m4' with '/usr/share/aclocal/ltversion.m4' aclocal: overwriting 'm4/lt~obsolete.m4' with '/usr/share/aclocal/lt~obsolete.m4' aclocal: overwriting 'm4/pkg.m4' with '/usr/share/aclocal/pkg.m4' configure.ac:77: warning: LT_INIT was called before AM_PROG_AR /usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR aclocal.m4:70: AM_PROG_AR is expanded from... configure.ac:77: the top level libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:77: warning: LT_INIT was called before AM_PROG_AR /usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR /usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR aclocal.m4:70: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR aclocal.m4:70: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR aclocal.m4:70: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: installing './ar-lib' configure.ac:12: installing './compile' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after dh_auto_configure -a install -d /<>/debian/.debhelper/generated/_source/home ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.s390x checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for s390x-linux-gnu-strip... s390x-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... s390x-ibm-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to accept ISO C89... none needed checking whether s390x-linux-gnu-gcc understands -c and -o together... yes checking dependency style of s390x-linux-gnu-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by s390x-linux-gnu-gcc... /usr/s390x-linux-gnu/bin/ld checking if the linker (/usr/s390x-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/s390x-linux-gnu-nm -B checking the name lister (/usr/bin/s390x-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/s390x-linux-gnu/bin/ld option to reload object files... -r checking for s390x-linux-gnu-objdump... s390x-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for s390x-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for s390x-linux-gnu-ar... s390x-linux-gnu-ar checking for archiver @FILE support... @ checking for s390x-linux-gnu-strip... (cached) s390x-linux-gnu-strip checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking command to parse /usr/bin/s390x-linux-gnu-nm -B output from s390x-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for s390x-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... s390x-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if s390x-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for s390x-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if s390x-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if s390x-linux-gnu-gcc static flag -static works... yes checking if s390x-linux-gnu-gcc supports -c -o file.o... yes checking if s390x-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the s390x-linux-gnu-gcc linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for s390x-linux-gnu-g++... s390x-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether s390x-linux-gnu-g++ accepts -g... yes checking dependency style of s390x-linux-gnu-g++... none checking how to run the C++ preprocessor... s390x-linux-gnu-g++ -E checking for ld used by s390x-linux-gnu-g++... /usr/s390x-linux-gnu/bin/ld -m elf64_s390 checking if the linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) is GNU ld... yes checking whether the s390x-linux-gnu-g++ linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) supports shared libraries... yes checking for s390x-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if s390x-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if s390x-linux-gnu-g++ static flag -static works... yes checking if s390x-linux-gnu-g++ supports -c -o file.o... yes checking if s390x-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the s390x-linux-gnu-g++ linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for protoc... /usr/bin/protoc checking for library containing exp... none required checking for library containing log1p... none required checking for poptGetContext in -lpopt... yes checking for deflate in -lz... yes checking for BZ2_bzCompress in -lbz2... yes checking for Elk_Init in -lelk... yes checking popt.h usability... yes checking popt.h presence... yes checking for popt.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for s390x-linux-gnu-pkg-config... /usr/bin/s390x-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for protobuf >= 2.1.0... yes checking google/protobuf/message.h usability... yes checking google/protobuf/message.h presence... yes checking for google/protobuf/message.h... yes checking elk/scheme.h usability... yes checking elk/scheme.h presence... yes checking for elk/scheme.h... yes checking for ANSI C header files... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for working volatile... yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for int32_t... yes checking for int64_t... yes checking for size_t... yes checking for ssize_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for memset... yes checking for munmap... yes checking for pow... yes checking for strerror... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating man/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands checking for s390x-linux-gnu-ar... (cached) s390x-linux-gnu-ar checking the archiver (s390x-linux-gnu-ar) interface... ar dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' protoc -I. -I/usr/include --cpp_out=. config.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:648] No syntax specified for the proto file: config.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) protoc -I. -I/usr/include --cpp_out=. output.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:648] No syntax specified for the proto file: output.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) [libprotobuf WARNING google/protobuf/compiler/parser.cc:648] No syntax specified for the proto file: config.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) make all-am make[4]: Entering directory '/<>/src' s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fa2dna.o fa2dna.cc /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o align.lo align.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c align.cc -fPIC -DPIC -o .libs/align.o In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h:34:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:26: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h:278:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:26: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c align.cc -o align.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo_common.lo anfo_common.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo_common.cc -fPIC -DPIC -o .libs/anfo_common.o In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h:34:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:26: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h:278:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:26: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo_common.cc -o anfo_common.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o concurrent_stream.lo concurrent_stream.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c concurrent_stream.cc -fPIC -DPIC -o .libs/concurrent_stream.o In file included from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ concurrent_stream.cc: In member function ‘virtual output::Result streams::ConcurrentStream::fetch_result()’: concurrent_stream.cc:178:2: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 178 | auto_ptr< Result > r( outgoing_[ next_out_++ ] ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ concurrent_stream.cc: In member function ‘void streams::ConcurrentStream::dequeue(streams::Stream*)’: concurrent_stream.cc:212:2: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 212 | auto_ptr< Result > r( incoming_[ next_in_ ] ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c concurrent_stream.cc -o concurrent_stream.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ducttape.lo ducttape.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ducttape.cc -fPIC -DPIC -o .libs/ducttape.o In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h:34:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:26: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h:278:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:26: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.cc:21: ducttape.h:139:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 139 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ducttape.cc -o ducttape.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o index.lo index.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c index.cc -fPIC -DPIC -o .libs/index.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c index.cc -o index.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o misc_streams.lo misc_streams.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c misc_streams.cc -fPIC -DPIC -o .libs/misc_streams.o In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h:34:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:26: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h: At global scope: compress_stream.h:225:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h:278:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:26: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ misc_streams.cc: In constructor ‘streams::RegionFilter::RegionFilter(const std::pair*, std::__cxx11::basic_string >&)’: misc_streams.cc:489:2: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 489 | auto_ptr< istream > deffile( p.first ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c misc_streams.cc -o misc_streams.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o output_streams.lo output_streams.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c output_streams.cc -fPIC -DPIC -o .libs/output_streams.o In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h:34:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:26: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h:278:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:26: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:45:3: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 45 | auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:72:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 72 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:123:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 123 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:138:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:149:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 149 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:176:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 176 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c output_streams.cc -o output_streams.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.lo sequence.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.cc -fPIC -DPIC -o .libs/sequence.o In file included from stream.h:20, from sequence.cc:23: compress_stream.h:34:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from sequence.cc:23: compress_stream.h:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from sequence.cc:23: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:26: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from sequence.cc:23: compress_stream.h: At global scope: compress_stream.h:225:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from sequence.cc:23: compress_stream.h:278:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from sequence.cc:23: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:26: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.cc -o sequence.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stream.lo stream.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stream.cc -fPIC -DPIC -o .libs/stream.o In file included from stream.cc:21: compress_stream.h:34:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.cc:21: compress_stream.h:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:26: note: in C++11 destructors default to ‘noexcept’ In file included from stream.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.cc:21: compress_stream.h:278:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:26: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc:81:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | AnfoReader::AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) : is_( is ), name_( name ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc: In member function ‘virtual void streams::ChunkedWriter::put_result(const output::Result&)’: stream.cc:344:27: warning: ‘int google::protobuf::MessageLite::ByteSize() const’ is deprecated: Please use ByteSizeLong() instead [-Wdeprecated-declarations] 344 | flush_buffer( r.ByteSize() ) ; | ^ In file included from /usr/include/google/protobuf/generated_enum_util.h:36, from /usr/include/google/protobuf/map.h:55, from /usr/include/google/protobuf/generated_message_table_driven.h:34, from output.pb.h:26, from stream.h:22, from misc_streams.h:4, from stream.cc:22: /usr/include/google/protobuf/message_lite.h:420:7: note: declared here 420 | int ByteSize() const { return internal::ToIntSize(ByteSizeLong()); } | ^~~~~~~~ stream.cc: At global scope: stream.cc:421:36: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 421 | ChunkedReader::ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) : is_( is ), name_( name ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc:1093:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 1093 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc:1114:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 1114 | StreamWithProgress( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, int64_t total ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc:1149:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 1149 | StreamHolder make_input_stream_( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, bool solexa_scores, char origin, const string& genome ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc: In function ‘streams::StreamHolder streams::{anonymous}::make_input_stream_(std::auto_ptr, const string&, bool, char, const string&)’: stream.cc:1179:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 1179 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > bs( new BunzipStream( is ) ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc:1189:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 1189 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > zs( new InflateStream( is ) ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc: In member function ‘virtual output::Header streams::UniversalReader::fetch_header()’: stream.cc:1233:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 1233 | std::auto_ptr< google::protobuf::io::FileInputStream > s( new google::protobuf::io::FileInputStream( fd ) ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc:1238:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 1238 | std::auto_ptr(s), name_, st.st_size ) ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc: At global scope: stream.cc:1378:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 1378 | BamReader::BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h: In instantiation of ‘void streams::write_delimited_message(google::protobuf::io::CodedOutputStream&, int, const Msg&) [with Msg = output::Header]’: stream.h:102:25: required from ‘void streams::write_delimited_message(google::protobuf::io::ZeroCopyOutputStream*, int, const Msg&) [with Msg = output::Header]’ stream.cc:322:44: required from here stream.h:88:30: warning: ‘int google::protobuf::MessageLite::ByteSize() const’ is deprecated: Please use ByteSizeLong() instead [-Wdeprecated-declarations] 88 | os.WriteVarint32( m.ByteSize() ) ; | ~~~~~~~~~~^~ In file included from /usr/include/google/protobuf/generated_enum_util.h:36, from /usr/include/google/protobuf/map.h:55, from /usr/include/google/protobuf/generated_message_table_driven.h:34, from output.pb.h:26, from stream.h:22, from misc_streams.h:4, from stream.cc:22: /usr/include/google/protobuf/message_lite.h:420:7: note: declared here 420 | int ByteSize() const { return internal::ToIntSize(ByteSizeLong()); } | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h: In instantiation of ‘void streams::write_delimited_message(google::protobuf::io::CodedOutputStream&, int, const Msg&) [with Msg = output::Footer]’: stream.h:102:25: required from ‘void streams::write_delimited_message(google::protobuf::io::ZeroCopyOutputStream*, int, const Msg&) [with Msg = output::Footer]’ stream.cc:331:44: required from here stream.h:88:30: warning: ‘int google::protobuf::MessageLite::ByteSize() const’ is deprecated: Please use ByteSizeLong() instead [-Wdeprecated-declarations] 88 | os.WriteVarint32( m.ByteSize() ) ; | ~~~~~~~~~~^~ In file included from /usr/include/google/protobuf/generated_enum_util.h:36, from /usr/include/google/protobuf/map.h:55, from /usr/include/google/protobuf/generated_message_table_driven.h:34, from output.pb.h:26, from stream.h:22, from misc_streams.h:4, from stream.cc:22: /usr/include/google/protobuf/message_lite.h:420:7: note: declared here 420 | int ByteSize() const { return internal::ToIntSize(ByteSizeLong()); } | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h: In instantiation of ‘void streams::write_delimited_message(google::protobuf::io::CodedOutputStream&, int, const Msg&) [with Msg = output::Result]’: stream.h:102:25: required from ‘void streams::write_delimited_message(google::protobuf::io::ZeroCopyOutputStream*, int, const Msg&) [with Msg = output::Result]’ stream.cc:345:44: required from here stream.h:88:30: warning: ‘int google::protobuf::MessageLite::ByteSize() const’ is deprecated: Please use ByteSizeLong() instead [-Wdeprecated-declarations] 88 | os.WriteVarint32( m.ByteSize() ) ; | ~~~~~~~~~~^~ In file included from /usr/include/google/protobuf/generated_enum_util.h:36, from /usr/include/google/protobuf/map.h:55, from /usr/include/google/protobuf/generated_message_table_driven.h:34, from output.pb.h:26, from stream.h:22, from misc_streams.h:4, from stream.cc:22: /usr/include/google/protobuf/message_lite.h:420:7: note: declared here 420 | int ByteSize() const { return internal::ToIntSize(ByteSizeLong()); } | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stream.cc -o stream.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.lo util.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.cc -fPIC -DPIC -o .libs/util.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.cc -o util.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo-elk.lo anfo-elk.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo-elk.cc -fPIC -DPIC -o .libs/anfo-elk.o In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h:34:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:26: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h: At global scope: compress_stream.h:225:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h:278:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:26: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:28: ducttape.h:139:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 139 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:45:3: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 45 | auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:72:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 72 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:123:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 123 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:138:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:149:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 149 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:176:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 176 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:30: misc_streams.h: In instantiation of ‘void streams::SortingStream::put_result(const output::Result&) [with Comp = streams::by_seqid]’: misc_streams.h:282:16: required from here misc_streams.h:284:59: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ In file included from anfo-elk.cc:30: misc_streams.h:284:59: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ In file included from anfo-elk.cc:30: misc_streams.h: In instantiation of ‘void streams::SortingStream::put_result(const output::Result&) [with Comp = streams::by_genome_coordinate]’: misc_streams.h:282:16: required from here misc_streams.h:284:59: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ In file included from anfo-elk.cc:30: misc_streams.h:284:59: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo-elk.cc -o anfo-elk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fastlz.lo fastlz.c libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fastlz.c -fPIC -DPIC -o .libs/fastlz.o libtool: compile: s390x-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fastlz.c -o fastlz.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o config.pb.lo config.pb.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c config.pb.cc -fPIC -DPIC -o .libs/config.pb.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c config.pb.cc -o config.pb.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o output.pb.lo output.pb.cc libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c output.pb.cc -fPIC -DPIC -o .libs/output.pb.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c output.pb.cc -o output.pb.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libanfo.la -rpath /usr/lib/s390x-linux-gnu align.lo anfo_common.lo concurrent_stream.lo ducttape.lo index.lo misc_streams.lo output_streams.lo sequence.lo stream.lo util.lo anfo-elk.lo fastlz.lo config.pb.lo output.pb.lo -L/usr/lib/s390x-linux-gnu -lprotobuf -lpthread -lelk -lbz2 -lz -lpopt libtool: link: s390x-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/s390x-linux-gnu/10/../../../../s390x-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/s390x-linux-gnu/10/crtbeginS.o .libs/align.o .libs/anfo_common.o .libs/concurrent_stream.o .libs/ducttape.o .libs/index.o .libs/misc_streams.o .libs/output_streams.o .libs/sequence.o .libs/stream.o .libs/util.o .libs/anfo-elk.o .libs/fastlz.o .libs/config.pb.o .libs/output.pb.o -L/usr/lib/s390x-linux-gnu -lprotobuf -lpthread -lelk -lbz2 -lz -lpopt -L/usr/lib/gcc-cross/s390x-linux-gnu/10 -L/usr/lib/gcc-cross/s390x-linux-gnu/10/../../../../s390x-linux-gnu/lib/../lib -L/lib/s390x-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/s390x-linux-gnu/10/../../../../s390x-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/s390x-linux-gnu/10/crtendS.o /usr/lib/gcc-cross/s390x-linux-gnu/10/../../../../s390x-linux-gnu/lib/../lib/crtn.o -pthread -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -Wl,-soname -Wl,libanfo.so.0 -o .libs/libanfo.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libanfo.so.0" && ln -s "libanfo.so.0.0.0" "libanfo.so.0") libtool: link: (cd ".libs" && rm -f "libanfo.so" && ln -s "libanfo.so.0.0.0" "libanfo.so") libtool: link: s390x-linux-gnu-ar cr .libs/libanfo.a align.o anfo_common.o concurrent_stream.o ducttape.o index.o misc_streams.o output_streams.o sequence.o stream.o util.o anfo-elk.o fastlz.o config.pb.o output.pb.o libtool: link: s390x-linux-gnu-ranlib .libs/libanfo.a libtool: link: ( cd ".libs" && rm -f "libanfo.la" && ln -s "../libanfo.la" "libanfo.la" ) /bin/bash ../libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o fa2dna fa2dna.o libanfo.la -L/usr/lib/s390x-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt libtool: link: s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fa2dna fa2dna.o ./.libs/libanfo.so -L/usr/lib/s390x-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt -pthread s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o dnaindex.o dnaindex.cc /bin/bash ../libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o dnaindex dnaindex.o libanfo.la -L/usr/lib/s390x-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt libtool: link: s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/dnaindex dnaindex.o ./.libs/libanfo.so -L/usr/lib/s390x-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt -pthread s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo-tool.o anfo-tool.cc In file included from anfo-tool.cc:21: compress_stream.h:34:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:21: compress_stream.h:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:26: note: in C++11 destructors default to ‘noexcept’ In file included from anfo-tool.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:21: compress_stream.h:278:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:26: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:22: ducttape.h:139:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 139 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:45:3: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 45 | auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:72:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 72 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:123:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 123 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:138:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:149:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 149 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:176:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 176 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:23: misc_streams.h: In instantiation of ‘void streams::SortingStream::put_result(const output::Result&) [with Comp = streams::by_seqid]’: misc_streams.h:282:16: required from here misc_streams.h:284:59: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from ducttape.h:20, from anfo-tool.cc:22: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ In file included from anfo-tool.cc:23: misc_streams.h:284:59: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from ducttape.h:20, from anfo-tool.cc:22: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ In file included from anfo-tool.cc:23: misc_streams.h: In instantiation of ‘void streams::SortingStream::put_result(const output::Result&) [with Comp = streams::by_genome_coordinate]’: misc_streams.h:282:16: required from here misc_streams.h:284:59: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from ducttape.h:20, from anfo-tool.cc:22: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ In file included from anfo-tool.cc:23: misc_streams.h:284:59: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from ducttape.h:20, from anfo-tool.cc:22: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o anfo-tool anfo-tool.o libanfo.la -L/usr/lib/s390x-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt libtool: link: s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/anfo-tool anfo-tool.o ./.libs/libanfo.so -L/usr/lib/s390x-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt -pthread s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo.o anfo.cc In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h:34:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:26: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h: At global scope: compress_stream.h:225:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h:278:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:26: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o anfo anfo.o libanfo.la -L/usr/lib/s390x-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt libtool: link: s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/anfo anfo.o ./.libs/libanfo.so -L/usr/lib/s390x-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt -pthread s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o index-test.o index-test.cc In file included from index-test.cc:27: compress_stream.h:34:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:27: compress_stream.h:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:27: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:26: note: in C++11 destructors default to ‘noexcept’ In file included from index-test.cc:27: compress_stream.h: At global scope: compress_stream.h:225:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:27: compress_stream.h:278:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:27: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:26: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o index-test index-test.o libanfo.la -L/usr/lib/s390x-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt libtool: link: s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/index-test index-test.o ./.libs/libanfo.so -L/usr/lib/s390x-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt -pthread s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o file-info.o file-info.cc In file included from stream.h:20, from file-info.cc:25: compress_stream.h:34:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from file-info.cc:25: compress_stream.h:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from file-info.cc:25: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:26: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from file-info.cc:25: compress_stream.h: At global scope: compress_stream.h:225:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from file-info.cc:25: compress_stream.h:278:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from file-info.cc:25: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:26: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:26: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:7: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h: At global scope: stream.h:319:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:323:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:345:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:385:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:387:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:414:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:416:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:422:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:747:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:762:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:772:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:795:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:806:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:821:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:832:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:846:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:880:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/10/memory:83, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/s390x-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o file-info file-info.o libanfo.la -L/usr/lib/s390x-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt libtool: link: s390x-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/file-info file-info.o ./.libs/libanfo.so -L/usr/lib/s390x-linux-gnu -lprotobuf -lelk -lbz2 -lz -lpopt -pthread echo "; DO NOT EDIT THIS FILE! EDIT anfo.scm.in AND RUN MAKE INSTEAD!" > anfo.scm sed -e "s#__LIBDIR__#/usr/lib/s390x-linux-gnu#g" < ./anfo.scm.in >> anfo.scm make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' Making all in man make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/man' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a rm -f -- debian/anfo.substvars debian/libanfo0.substvars debian/libanfo0-dev.substvars rm -fr -- debian/.debhelper/generated/anfo/ debian/anfo/ debian/tmp/ debian/.debhelper/generated/libanfo0/ debian/libanfo0/ debian/.debhelper/generated/libanfo0-dev/ debian/libanfo0-dev/ dh_auto_install -a install -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make install-am make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/s390x-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libanfo.la '/<>/debian/tmp/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/libanfo.so.0.0.0 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libanfo.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/s390x-linux-gnu && { ln -s -f libanfo.so.0.0.0 libanfo.so.0 || { rm -f libanfo.so.0 && ln -s libanfo.so.0.0.0 libanfo.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/s390x-linux-gnu && { ln -s -f libanfo.so.0.0.0 libanfo.so || { rm -f libanfo.so && ln -s libanfo.so.0.0.0 libanfo.so; }; }) libtool: install: /usr/bin/install -c .libs/libanfo.lai /<>/debian/tmp/usr/lib/s390x-linux-gnu/libanfo.la libtool: install: /usr/bin/install -c .libs/libanfo.a /<>/debian/tmp/usr/lib/s390x-linux-gnu/libanfo.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libanfo.a libtool: install: s390x-linux-gnu-ranlib /<>/debian/tmp/usr/lib/s390x-linux-gnu/libanfo.a libtool: warning: remember to run 'libtool --finish /usr/lib/s390x-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c fa2dna dnaindex anfo-tool anfo '/<>/debian/tmp/usr/bin' libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/fa2dna /<>/debian/tmp/usr/bin/fa2dna libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/dnaindex /<>/debian/tmp/usr/bin/dnaindex libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/anfo-tool /<>/debian/tmp/usr/bin/anfo-tool libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/anfo /<>/debian/tmp/usr/bin/anfo /bin/mkdir -p '/<>/debian/tmp/usr/libexec' /bin/bash ../libtool --mode=install /usr/bin/install -c index-test file-info '/<>/debian/tmp/usr/libexec' libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/index-test /<>/debian/tmp/usr/libexec/index-test libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/file-info /<>/debian/tmp/usr/libexec/file-info /bin/mkdir -p '/<>/debian/tmp/usr/share/anfo' /usr/bin/install -c -m 644 config.proto output.proto '/<>/debian/tmp/usr/share/anfo' /bin/mkdir -p '/<>/debian/tmp/usr/share/elk' /usr/bin/install -c srfi-88.scm srfi-89.scm '/<>/debian/tmp/usr/share/elk' /bin/mkdir -p '/<>/debian/tmp/usr/include/anfo' /usr/bin/install -c -m 644 align.h align_fwd.h anfo_common.h compress_stream.h concurrent_stream.h conffile.h ducttape.h index.h logdom.h misc_streams.h output_streams.h sequence.h stream.h trim.h util.h '/<>/debian/tmp/usr/include/anfo' /bin/mkdir -p '/<>/debian/tmp/usr/share/elk' /usr/bin/install -c anfo.scm '/<>/debian/tmp/usr/share/elk' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in man make[2]: Entering directory '/<>/man' make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 fa2dna.1 dnaindex.1 anfo-sge.1 anfo-tool.1 file-info.1 '/<>/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/<>/man' make[2]: Leaving directory '/<>/man' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/anfo' /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/anfo/example' /usr/bin/install -c -m 644 example/ancient.cfg example/default.cfg example/split-anfo.scm example/threebam.scm '/<>/debian/tmp/usr/share/doc/anfo/example' /usr/bin/install -c -m 644 README '/<>/debian/tmp/usr/share/doc/anfo/.' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' d-shlibmove --commit \ --multiarch \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/libanfo.so Library package automatic movement utility --> libbz2-dev package exists. --> libelk0-dev package exists. --> libprotobuf-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libanfo0-dev/usr/lib/s390x-linux-gnu install -d -m 755 debian/libanfo0/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libanfo.a debian/libanfo0-dev/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libanfo.la debian/libanfo0-dev/usr/lib/s390x-linux-gnu || true mv debian/tmp/usr/lib/s390x-linux-gnu/libanfo.so debian/libanfo0-dev/usr/lib/s390x-linux-gnu mv /<>/debian/tmp/usr/lib/s390x-linux-gnu/libanfo.so.0 debian/libanfo0/usr/lib/s390x-linux-gnu mv /<>/debian/tmp/usr/lib/s390x-linux-gnu/libanfo.so.0.0.0 debian/libanfo0/usr/lib/s390x-linux-gnu PKGDEV=libanfo0-dev PKGSHL=libanfo0 install -d -m 755 debian/libanfo0-dev/usr/include mv debian/tmp/usr/include/anfo debian/libanfo0-dev/usr/include find debian -name "lib*.la" -delete dh_install install -d debian/anfo/usr cp --reflink=auto -a debian/tmp/usr/bin debian/tmp/usr/share debian/anfo/usr/ install -d debian/anfo/usr/lib/anfo cp --reflink=auto -a debian/tmp/usr/libexec/file-info debian/tmp/usr/libexec/index-test debian/anfo/usr/lib/anfo/ install -d debian/.debhelper/generated/anfo install -d debian/.debhelper/generated/libanfo0 install -d debian/.debhelper/generated/libanfo0-dev make[1]: Leaving directory '/<>' dh_installdocs -a install -p -m0644 debian/README.Debian debian/anfo/usr/share/doc/anfo/README.Debian install -p -m0644 debian/copyright debian/anfo/usr/share/doc/anfo/copyright install -d debian/libanfo0/usr/share/doc/libanfo0 install -p -m0644 debian/copyright debian/libanfo0/usr/share/doc/libanfo0/copyright install -d debian/libanfo0-dev/usr/share/doc/libanfo0-dev install -p -m0644 debian/copyright debian/libanfo0-dev/usr/share/doc/libanfo0-dev/copyright dh_installchangelogs -a install -p -m0644 debian/changelog debian/anfo/usr/share/doc/anfo/changelog.Debian install -p -m0644 debian/changelog debian/libanfo0/usr/share/doc/libanfo0/changelog.Debian install -p -m0644 debian/changelog debian/libanfo0-dev/usr/share/doc/libanfo0-dev/changelog.Debian rm -f debian/anfo.debhelper.log debian/libanfo0-dev.debhelper.log debian/libanfo0.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman install -p -m0644 ./debian/anfo.1 debian/anfo/usr/share/man/man1/anfo.1 man-recode --to-code UTF-8 --suffix .dh-new debian/anfo/usr/share/man/man1/anfo-sge.1 debian/anfo/usr/share/man/man1/anfo-tool.1 debian/anfo/usr/share/man/man1/anfo.1 debian/anfo/usr/share/man/man1/dnaindex.1 debian/anfo/usr/share/man/man1/fa2dna.1 debian/anfo/usr/share/man/man1/file-info.1 mv debian/anfo/usr/share/man/man1/anfo-sge.1.dh-new debian/anfo/usr/share/man/man1/anfo-sge.1 mv debian/anfo/usr/share/man/man1/anfo-tool.1.dh-new debian/anfo/usr/share/man/man1/anfo-tool.1 mv debian/anfo/usr/share/man/man1/anfo.1.dh-new debian/anfo/usr/share/man/man1/anfo.1 mv debian/anfo/usr/share/man/man1/dnaindex.1.dh-new debian/anfo/usr/share/man/man1/dnaindex.1 mv debian/anfo/usr/share/man/man1/fa2dna.1.dh-new debian/anfo/usr/share/man/man1/fa2dna.1 mv debian/anfo/usr/share/man/man1/file-info.1.dh-new debian/anfo/usr/share/man/man1/file-info.1 chmod 0644 -- debian/anfo/usr/share/man/man1/anfo-sge.1 debian/anfo/usr/share/man/man1/anfo-tool.1 debian/anfo/usr/share/man/man1/anfo.1 debian/anfo/usr/share/man/man1/dnaindex.1 debian/anfo/usr/share/man/man1/fa2dna.1 debian/anfo/usr/share/man/man1/file-info.1 # delete unused manpage find debian/anfo -name anfo-sge.1 -delete make[1]: Leaving directory '/<>' dh_perl -a dh_link -a rm -f debian/libanfo0/usr/lib/s390x-linux-gnu/libanfo.so.0 ln -s libanfo.so.0.0.0 debian/libanfo0/usr/lib/s390x-linux-gnu/libanfo.so.0 rm -f debian/libanfo0-dev/usr/lib/s390x-linux-gnu/libanfo.so ln -s libanfo.so.0.0.0 debian/libanfo0-dev/usr/lib/s390x-linux-gnu/libanfo.so dh_strip_nondeterminism -a dh_compress -a cd debian/anfo chmod a-x usr/share/doc/anfo/README usr/share/doc/anfo/changelog.Debian usr/share/man/man1/anfo-tool.1 usr/share/man/man1/anfo.1 usr/share/man/man1/dnaindex.1 usr/share/man/man1/fa2dna.1 usr/share/man/man1/file-info.1 gzip -9nf usr/share/doc/anfo/README usr/share/doc/anfo/changelog.Debian usr/share/man/man1/anfo-tool.1 usr/share/man/man1/anfo.1 usr/share/man/man1/dnaindex.1 usr/share/man/man1/fa2dna.1 usr/share/man/man1/file-info.1 cd '/<>' cd debian/libanfo0 chmod a-x usr/share/doc/libanfo0/changelog.Debian gzip -9nf usr/share/doc/libanfo0/changelog.Debian cd '/<>' cd debian/libanfo0-dev chmod a-x usr/share/doc/libanfo0-dev/changelog.Debian gzip -9nf usr/share/doc/libanfo0-dev/changelog.Debian cd '/<>' rm -f debian/anfo.debhelper.log debian/libanfo0-dev.debhelper.log debian/libanfo0.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/anfo ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/anfo/usr/share/doc -type f -a -true -a ! -regex 'debian/anfo/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/anfo/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/anfo/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/anfo -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/anfo/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/anfo/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libanfo0 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libanfo0/usr/share/doc -type f -a -true -a ! -regex 'debian/libanfo0/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libanfo0/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libanfo0 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libanfo0/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libanfo0-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libanfo0-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libanfo0-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libanfo0-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libanfo0-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libanfo0-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libanfo0-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/anfo -perm -5 -type f \( -name '*.scm' \) -print0 2>/dev/null | xargs -0r chmod 644 make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a -a install -d debian/anfo/usr/lib/debug/.dwz/s390x-linux-gnu dwz -mdebian/anfo/usr/lib/debug/.dwz/s390x-linux-gnu/anfo.debug -M/usr/lib/debug/.dwz/s390x-linux-gnu/anfo.debug -- debian/anfo/usr/bin/anfo debian/anfo/usr/bin/anfo-tool debian/anfo/usr/bin/dnaindex debian/anfo/usr/bin/fa2dna debian/anfo/usr/lib/anfo/file-info debian/anfo/usr/lib/anfo/index-test s390x-linux-gnu-objcopy --compress-debug-sections debian/anfo/usr/lib/debug/.dwz/s390x-linux-gnu/anfo.debug dwz -- debian/libanfo0/usr/lib/s390x-linux-gnu/libanfo.so.0.0.0 dh_strip -a -a install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/c0 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/anfo/usr/lib/anfo/index-test debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/c0/718db8f6fcba3c81bf7ba019bbaa81886ac538.debug chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/c0/718db8f6fcba3c81bf7ba019bbaa81886ac538.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/anfo/usr/lib/anfo/index-test s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/c0/718db8f6fcba3c81bf7ba019bbaa81886ac538.debug debian/anfo/usr/lib/anfo/index-test install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/a9 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/anfo/usr/lib/anfo/file-info debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/a9/9828b24fa6c2ee08ed97dc0e141405fb8d364f.debug chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/a9/9828b24fa6c2ee08ed97dc0e141405fb8d364f.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/anfo/usr/lib/anfo/file-info s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/a9/9828b24fa6c2ee08ed97dc0e141405fb8d364f.debug debian/anfo/usr/lib/anfo/file-info install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/8a s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/anfo/usr/bin/fa2dna debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/8a/e2c9ec0142043abd87100d7b228f57e4bcb44e.debug chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/8a/e2c9ec0142043abd87100d7b228f57e4bcb44e.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/anfo/usr/bin/fa2dna s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/8a/e2c9ec0142043abd87100d7b228f57e4bcb44e.debug debian/anfo/usr/bin/fa2dna install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/af s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/anfo/usr/bin/dnaindex debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/af/63ed41f434d7138b013511a1417c8fc4232bbb.debug chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/af/63ed41f434d7138b013511a1417c8fc4232bbb.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/anfo/usr/bin/dnaindex s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/af/63ed41f434d7138b013511a1417c8fc4232bbb.debug debian/anfo/usr/bin/dnaindex install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/d3 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/anfo/usr/bin/anfo-tool debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/d3/f3f40af9d9f46b9a2b9aca3b4bb78e1420ffc4.debug chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/d3/f3f40af9d9f46b9a2b9aca3b4bb78e1420ffc4.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/anfo/usr/bin/anfo-tool s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/d3/f3f40af9d9f46b9a2b9aca3b4bb78e1420ffc4.debug debian/anfo/usr/bin/anfo-tool install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/c2 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/anfo/usr/bin/anfo debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/c2/caa694b6c2079a67c7ee0f77aa10983484fb8a.debug chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/c2/caa694b6c2079a67c7ee0f77aa10983484fb8a.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/anfo/usr/bin/anfo s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/c2/caa694b6c2079a67c7ee0f77aa10983484fb8a.debug debian/anfo/usr/bin/anfo install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/anfo/usr/lib/debug/.dwz/s390x-linux-gnu debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/anfo/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/anfo/usr/lib/debug install -d debian/.debhelper/anfo/dbgsym-root/usr/share/doc ln -s anfo debian/.debhelper/anfo/dbgsym-root/usr/share/doc/anfo-dbgsym install -d debian/.debhelper/libanfo0/dbgsym-root/usr/lib/debug/.build-id/2d s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libanfo0/usr/lib/s390x-linux-gnu/libanfo.so.0.0.0 debian/.debhelper/libanfo0/dbgsym-root/usr/lib/debug/.build-id/2d/f3d4609cc3be17be48e153c7ac712b84b0d094.debug chmod 0644 -- debian/.debhelper/libanfo0/dbgsym-root/usr/lib/debug/.build-id/2d/f3d4609cc3be17be48e153c7ac712b84b0d094.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libanfo0/usr/lib/s390x-linux-gnu/libanfo.so.0.0.0 s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libanfo0/dbgsym-root/usr/lib/debug/.build-id/2d/f3d4609cc3be17be48e153c7ac712b84b0d094.debug debian/libanfo0/usr/lib/s390x-linux-gnu/libanfo.so.0.0.0 install -d debian/.debhelper/libanfo0/dbgsym-root/usr/share/doc ln -s libanfo0 debian/.debhelper/libanfo0/dbgsym-root/usr/share/doc/libanfo0-dbgsym s390x-linux-gnu-strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libanfo0-dev/usr/lib/s390x-linux-gnu/libanfo.a dh_makeshlibs -a -a rm -f debian/anfo/DEBIAN/shlibs rm -f debian/libanfo0/DEBIAN/shlibs install -d debian/libanfo0/DEBIAN echo "libanfo 0 libanfo0 (>= 0.98)" >> debian/libanfo0/DEBIAN/shlibs chmod 0644 -- debian/libanfo0/DEBIAN/shlibs mv debian/.debhelper/generated/libanfo0/triggers.new debian/.debhelper/generated/libanfo0/triggers rm -f debian/libanfo0-dev/DEBIAN/shlibs dh_shlibdeps -a -a install -d debian/anfo/DEBIAN dpkg-shlibdeps -Tdebian/anfo.substvars debian/anfo/usr/lib/anfo/file-info debian/anfo/usr/lib/anfo/index-test debian/anfo/usr/bin/anfo debian/anfo/usr/bin/anfo-tool debian/anfo/usr/bin/dnaindex debian/anfo/usr/bin/fa2dna dpkg-shlibdeps -Tdebian/libanfo0.substvars debian/libanfo0/usr/lib/s390x-linux-gnu/libanfo.so.0.0.0 dh_installdeb -a install -p -m0644 debian/.debhelper/generated/libanfo0/triggers debian/libanfo0/DEBIAN/triggers install -d debian/libanfo0-dev/DEBIAN dh_gencontrol -a echo misc:Depends= >> debian/anfo.substvars echo misc:Pre-Depends= >> debian/anfo.substvars install -d debian/.debhelper/anfo/dbgsym-root/DEBIAN dpkg-gencontrol -panfo -ldebian/changelog -Tdebian/anfo.substvars -Pdebian/.debhelper/anfo/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=anfo-dbgsym "-DDepends=anfo (= \${binary:Version})" "-DDescription=debug symbols for anfo" "-DBuild-Ids=8ae2c9ec0142043abd87100d7b228f57e4bcb44e a99828b24fa6c2ee08ed97dc0e141405fb8d364f af63ed41f434d7138b013511a1417c8fc4232bbb c0718db8f6fcba3c81bf7ba019bbaa81886ac538 c2caa694b6c2079a67c7ee0f77aa10983484fb8a d3f3f40af9d9f46b9a2b9aca3b4bb78e1420ffc4" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/DEBIAN/control dpkg-gencontrol -panfo -ldebian/changelog -Tdebian/anfo.substvars -Pdebian/anfo chmod 0644 -- debian/anfo/DEBIAN/control echo misc:Depends= >> debian/libanfo0.substvars echo misc:Pre-Depends= >> debian/libanfo0.substvars install -d debian/.debhelper/libanfo0/dbgsym-root/DEBIAN dpkg-gencontrol -plibanfo0 -ldebian/changelog -Tdebian/libanfo0.substvars -Pdebian/.debhelper/libanfo0/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=libanfo0-dbgsym "-DDepends=libanfo0 (= \${binary:Version})" "-DDescription=debug symbols for libanfo0" -DBuild-Ids=2df3d4609cc3be17be48e153c7ac712b84b0d094 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libanfo0/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibanfo0 -ldebian/changelog -Tdebian/libanfo0.substvars -Pdebian/libanfo0 chmod 0644 -- debian/libanfo0/DEBIAN/control echo misc:Depends= >> debian/libanfo0-dev.substvars echo misc:Pre-Depends= >> debian/libanfo0-dev.substvars dpkg-gencontrol -plibanfo0-dev -ldebian/changelog -Tdebian/libanfo0-dev.substvars -Pdebian/libanfo0-dev chmod 0644 -- debian/libanfo0-dev/DEBIAN/control dh_md5sums -a cd debian/anfo >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/anfo/DEBIAN/md5sums cd debian/.debhelper/anfo/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/DEBIAN/md5sums cd debian/libanfo0 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libanfo0/DEBIAN/md5sums cd debian/.debhelper/libanfo0/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libanfo0/dbgsym-root/DEBIAN/md5sums cd debian/libanfo0-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libanfo0-dev/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/anfo .. dpkg-deb: building package 'anfo' in '../anfo_0.98-8_s390x.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/anfo/dbgsym-root .. dpkg-deb: building package 'anfo-dbgsym' in '../anfo-dbgsym_0.98-8_s390x.deb'. dpkg-deb --root-owner-group --build debian/libanfo0 .. dpkg-deb: building package 'libanfo0' in '../libanfo0_0.98-8_s390x.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libanfo0/dbgsym-root .. dpkg-deb: building package 'libanfo0-dbgsym' in '../libanfo0-dbgsym_0.98-8_s390x.deb'. dpkg-deb --root-owner-group --build debian/libanfo0-dev .. dpkg-deb: building package 'libanfo0-dev' in '../libanfo0-dev_0.98-8_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../anfo_0.98-8_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-12-02T16:50:18Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ anfo_0.98-8_s390x.changes: -------------------------- Format: 1.8 Date: Wed, 25 Nov 2020 20:04:18 +0100 Source: anfo Binary: anfo anfo-dbgsym libanfo0 libanfo0-dbgsym libanfo0-dev Built-For-Profiles: cross nocheck Architecture: s390x Version: 0.98-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: anfo - Short Read Aligner/Mapper from MPG libanfo0 - Library for Short Read Aligner/Mapper from MPG libanfo0-dev - Development files for Short Read Aligner/Mapper from MPG Changes: anfo (0.98-8) unstable; urgency=medium . [ Jelmer Vernooij ] * Trim trailing whitespace. . [ Andreas Tille ] * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Update watch file format version to 4. * Use secure URI in Homepage field. * Install files of /usr/libexec Checksums-Sha1: fcace2cff0c7731632135225fe1eacbfaafdbd82 1049760 anfo-dbgsym_0.98-8_s390x.deb 09b7eeff87a5cf6d8f4365e4bde7c199f4abd997 7229 anfo_0.98-8_s390x.buildinfo 05eebce6b0a0298e68b96ad1a5704d2e895cd68a 106728 anfo_0.98-8_s390x.deb 0c1105064d138ff0b6207a7feedd35f5c7c56b61 3474468 libanfo0-dbgsym_0.98-8_s390x.deb 5fc8936f8d7c7bdac85fa8c5cf1b22b2fbef16a3 311440 libanfo0-dev_0.98-8_s390x.deb a2b190c55d3532dc2673951cf80c5612e0948b54 249676 libanfo0_0.98-8_s390x.deb Checksums-Sha256: 6a723bd3a308ee5ca4f69f14166288bd0a6ca427bacdf88df655c42edbdd799f 1049760 anfo-dbgsym_0.98-8_s390x.deb a70c8006682a2a5fb386fe7cc4442b49d192ca4247ac985196f4e480ee064baa 7229 anfo_0.98-8_s390x.buildinfo 37719c2de8ccc92ca11312c37ee8bf2f2ad31d419b48733ae47b5bfa6d5bafc9 106728 anfo_0.98-8_s390x.deb 01d82b6ef6e8759cb31c823f16fd845e42be032ed4e5a38fdd458dbff99b11d0 3474468 libanfo0-dbgsym_0.98-8_s390x.deb 31b3e5bd5d7db61fa5a166716ebd76f2d94a9eb31aa03e36c83e9889e4522a1d 311440 libanfo0-dev_0.98-8_s390x.deb 8c9cafabda6a425937a1f6fd9ed2ecb78f117409186124ceb6611cae4c5662b6 249676 libanfo0_0.98-8_s390x.deb Files: 17d43cca980be57c062a4ad360c0d609 1049760 debug optional anfo-dbgsym_0.98-8_s390x.deb 0083b1be51aec5fb560898cfc308b740 7229 science optional anfo_0.98-8_s390x.buildinfo 90736154a88288bb0cecc81db88de8e7 106728 science optional anfo_0.98-8_s390x.deb 115cf0fb4996e8c4ba889096463efb05 3474468 debug optional libanfo0-dbgsym_0.98-8_s390x.deb f5794599346704638456a5cb5d48f089 311440 libdevel optional libanfo0-dev_0.98-8_s390x.deb b62bed25f14239345acb26b071719e29 249676 libs optional libanfo0_0.98-8_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: anfo Binary: anfo anfo-dbgsym libanfo0 libanfo0-dbgsym libanfo0-dev Architecture: s390x Version: 0.98-8 Checksums-Md5: 17d43cca980be57c062a4ad360c0d609 1049760 anfo-dbgsym_0.98-8_s390x.deb 90736154a88288bb0cecc81db88de8e7 106728 anfo_0.98-8_s390x.deb 115cf0fb4996e8c4ba889096463efb05 3474468 libanfo0-dbgsym_0.98-8_s390x.deb f5794599346704638456a5cb5d48f089 311440 libanfo0-dev_0.98-8_s390x.deb b62bed25f14239345acb26b071719e29 249676 libanfo0_0.98-8_s390x.deb Checksums-Sha1: fcace2cff0c7731632135225fe1eacbfaafdbd82 1049760 anfo-dbgsym_0.98-8_s390x.deb 05eebce6b0a0298e68b96ad1a5704d2e895cd68a 106728 anfo_0.98-8_s390x.deb 0c1105064d138ff0b6207a7feedd35f5c7c56b61 3474468 libanfo0-dbgsym_0.98-8_s390x.deb 5fc8936f8d7c7bdac85fa8c5cf1b22b2fbef16a3 311440 libanfo0-dev_0.98-8_s390x.deb a2b190c55d3532dc2673951cf80c5612e0948b54 249676 libanfo0_0.98-8_s390x.deb Checksums-Sha256: 6a723bd3a308ee5ca4f69f14166288bd0a6ca427bacdf88df655c42edbdd799f 1049760 anfo-dbgsym_0.98-8_s390x.deb 37719c2de8ccc92ca11312c37ee8bf2f2ad31d419b48733ae47b5bfa6d5bafc9 106728 anfo_0.98-8_s390x.deb 01d82b6ef6e8759cb31c823f16fd845e42be032ed4e5a38fdd458dbff99b11d0 3474468 libanfo0-dbgsym_0.98-8_s390x.deb 31b3e5bd5d7db61fa5a166716ebd76f2d94a9eb31aa03e36c83e9889e4522a1d 311440 libanfo0-dev_0.98-8_s390x.deb 8c9cafabda6a425937a1f6fd9ed2ecb78f117409186124ceb6611cae4c5662b6 249676 libanfo0_0.98-8_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 02 Dec 2020 16:50:17 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 2.1.12), autoconf (= 2.69-11.1), automake (= 1:1.16.3-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.48), bash (= 5.1~rc3-1), binutils (= 2.35.1-3), binutils-common (= 2.35.1-3), binutils-x86-64-linux-gnu (= 2.35.1-3), bsdextrautils (= 2.36.1-2), bsdutils (= 1:2.36.1-2), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.0-1), cpp-10 (= 10.2.0-19), d-shlibs (= 0.95), dash (= 0.5.11+git20200708+dd9ef66-2), debconf (= 1.5.74), debhelper (= 13.2.1), debian-archive-keyring (= 2019.1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.39-3), findutils (= 4.7.0+git20201010-2), g++ (= 4:10.2.0-1), g++-10 (= 10.2.0-19), gcc (= 4:10.2.0-1), gcc-10 (= 10.2.0-19), gcc-10-base (= 10.2.0-19), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), gpgv (= 2.2.20-1), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.59), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libapt-pkg6.0 (= 2.1.12), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-19), libatomic1 (= 10.2.0-19), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3.1), libaudit1 (= 1:2.8.5-3.1), libbinutils (= 2.35.1-3), libblkid1 (= 2.36.1-2), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-4), libbz2-dev (= 1.0.8-4), libc-bin (= 2.31-5), libc-dev-bin (= 2.31-5), libc6 (= 2.31-5), libc6-dev (= 2.31-5), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 10.2.0-19), libcom-err2 (= 1.45.6-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35.1-3), libctf0 (= 2.35.1-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.255), libdebhelper-perl (= 13.2.1), libdpkg-perl (= 1.20.5), libelf-dev (= 0.182-1), libelf1 (= 0.182-1), libelk0 (= 3.99.8-4.2+b1), libelk0-dev (= 3.99.8-4.2+b1), libffi7 (= 3.3-5), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-19), libgcc-s1 (= 10.2.0-19), libgcrypt20 (= 1.8.7-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.66.3-1), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.6.15-4), libgomp1 (= 10.2.0-19), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-4), libhogweed6 (= 3.6-2), libice-dev (= 2:1.0.10-1), libice6 (= 2:1.0.10-1), libicu67 (= 67.1-4), libidn2-0 (= 2.3.0-4), libisl23 (= 0.23-1), libitm1 (= 10.2.0-19), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), liblsan0 (= 10.2.0-19), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.6-2), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.23.21-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-5), libpipeline1 (= 1.5.3-1), libpopt-dev (= 1.18-2), libpopt0 (= 1.18-2), libprotobuf-dev (= 3.12.3-2+b1), libprotobuf-lite23 (= 3.12.3-2+b1), libprotobuf23 (= 3.12.3-2+b1), libprotoc23 (= 3.12.3-2+b1), libpthread-stubs0-dev (= 0.4-1), libquadmath0 (= 10.2.0-19), libseccomp2 (= 2.5.0-3), libselinux1 (= 3.1-2+b1), libsemanage-common (= 3.1-1), libsemanage1 (= 3.1-1+b1), libsepol1 (= 3.1-1), libsigsegv2 (= 2.12-2), libsm-dev (= 2:1.2.3-1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36.1-2), libssl1.1 (= 1.1.1h-1), libstdc++-10-dev (= 10.2.0-19), libstdc++6 (= 10.2.0-19), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-5), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-19), libubsan1 (= 10.2.0-19), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-5), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-2), libx11-6 (= 2:1.6.12-1), libx11-data (= 2:1.6.12-1), libx11-dev (= 2:1.6.12-1), libxau-dev (= 1:1.0.8-1+b2), libxau6 (= 1:1.0.8-1+b2), libxcb1 (= 1.14-2), libxcb1-dev (= 1.14-2), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.3-1+b2), libxext6 (= 2:1.3.3-1+b2), libxml2 (= 2.9.10+dfsg-6.3), libxmu-dev (= 2:1.1.2-2+b3), libxmu-headers (= 2:1.1.2-2), libxmu6 (= 2:1.1.2-2+b3), libxt-dev (= 1:1.2.0-1), libxt6 (= 1:1.2.0-1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.9.11-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-1), ncurses-bin (= 6.2+20201114-1), passwd (= 1:4.8.1-1), patch (= 2.7.6-6), perl (= 5.32.0-5), perl-base (= 5.32.0-5), perl-modules-5.32 (= 5.32.0-5), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21), protobuf-compiler (= 3.12.3-2+b1), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-5), tar (= 1.32+dfsg-1), util-linux (= 2.36.1-2), x11-common (= 1:7.7+21), x11proto-core-dev (= 2020.1-1), x11proto-dev (= 2020.1-1), x11proto-xext-dev (= 2020.1-1), xorg-sgml-doctools (= 1:1.11-1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1606331058" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ anfo-dbgsym_0.98-8_s390x.deb ---------------------------- new Debian package, version 2.0. size 1049760 bytes: control archive=848 bytes. 562 bytes, 12 lines control 716 bytes, 7 lines md5sums Package: anfo-dbgsym Source: anfo Version: 0.98-8 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1134 Depends: anfo (= 0.98-8) Section: debug Priority: optional Description: debug symbols for anfo Build-Ids: 8ae2c9ec0142043abd87100d7b228f57e4bcb44e a99828b24fa6c2ee08ed97dc0e141405fb8d364f af63ed41f434d7138b013511a1417c8fc4232bbb c0718db8f6fcba3c81bf7ba019bbaa81886ac538 c2caa694b6c2079a67c7ee0f77aa10983484fb8a d3f3f40af9d9f46b9a2b9aca3b4bb78e1420ffc4 drwxr-xr-x root/root 0 2020-11-25 19:04 ./ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/.build-id/8a/ -rw-r--r-- root/root 67072 2020-11-25 19:04 ./usr/lib/debug/.build-id/8a/e2c9ec0142043abd87100d7b228f57e4bcb44e.debug drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/.build-id/a9/ -rw-r--r-- root/root 78664 2020-11-25 19:04 ./usr/lib/debug/.build-id/a9/9828b24fa6c2ee08ed97dc0e141405fb8d364f.debug drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/.build-id/af/ -rw-r--r-- root/root 108888 2020-11-25 19:04 ./usr/lib/debug/.build-id/af/63ed41f434d7138b013511a1417c8fc4232bbb.debug drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/.build-id/c0/ -rw-r--r-- root/root 106936 2020-11-25 19:04 ./usr/lib/debug/.build-id/c0/718db8f6fcba3c81bf7ba019bbaa81886ac538.debug drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/.build-id/c2/ -rw-r--r-- root/root 187520 2020-11-25 19:04 ./usr/lib/debug/.build-id/c2/caa694b6c2079a67c7ee0f77aa10983484fb8a.debug drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/.build-id/d3/ -rw-r--r-- root/root 483288 2020-11-25 19:04 ./usr/lib/debug/.build-id/d3/f3f40af9d9f46b9a2b9aca3b4bb78e1420ffc4.debug drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 108392 2020-11-25 19:04 ./usr/lib/debug/.dwz/s390x-linux-gnu/anfo.debug drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-25 19:04 ./usr/share/doc/anfo-dbgsym -> anfo anfo_0.98-8_s390x.deb --------------------- new Debian package, version 2.0. size 106728 bytes: control archive=1508 bytes. 877 bytes, 16 lines control 1508 bytes, 24 lines md5sums Package: anfo Version: 0.98-8 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 411 Depends: libanfo0 (>= 0.98), libc6 (>= 2.29), libelk0, libgcc-s1 (>= 3.0), libpopt0 (>= 1.14), libprotobuf23 (>= 3.12.3), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://bioinf.eva.mpg.de/anfo/ Description: Short Read Aligner/Mapper from MPG Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead). drwxr-xr-x root/root 0 2020-11-25 19:04 ./ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/bin/ -rwxr-xr-x root/root 47416 2020-11-25 19:04 ./usr/bin/anfo -rwxr-xr-x root/root 159064 2020-11-25 19:04 ./usr/bin/anfo-tool -rwxr-xr-x root/root 35128 2020-11-25 19:04 ./usr/bin/dnaindex -rwxr-xr-x root/root 30952 2020-11-25 19:04 ./usr/bin/fa2dna drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/anfo/ -rwxr-xr-x root/root 22840 2020-11-25 19:04 ./usr/lib/anfo/file-info -rwxr-xr-x root/root 30952 2020-11-25 19:04 ./usr/lib/anfo/index-test drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/anfo/ -rw-r--r-- root/root 6784 2020-11-25 19:04 ./usr/share/anfo/config.proto -rw-r--r-- root/root 14546 2020-11-25 19:04 ./usr/share/anfo/output.proto drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/doc/anfo/ -rw-r--r-- root/root 909 2020-11-25 19:04 ./usr/share/doc/anfo/README.Debian -rw-r--r-- root/root 2441 2020-11-25 19:04 ./usr/share/doc/anfo/README.gz -rw-r--r-- root/root 1193 2020-11-25 19:04 ./usr/share/doc/anfo/changelog.Debian.gz -rw-r--r-- root/root 2550 2020-11-25 19:04 ./usr/share/doc/anfo/copyright drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/doc/anfo/example/ -rw-r--r-- root/root 1807 2020-11-25 19:04 ./usr/share/doc/anfo/example/ancient.cfg -rw-r--r-- root/root 2056 2020-11-25 19:04 ./usr/share/doc/anfo/example/default.cfg -rw-r--r-- root/root 521 2020-11-25 19:04 ./usr/share/doc/anfo/example/split-anfo.scm -rw-r--r-- root/root 567 2020-11-25 19:04 ./usr/share/doc/anfo/example/threebam.scm drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/elk/ -rw-r--r-- root/root 9713 2020-11-25 19:04 ./usr/share/elk/anfo.scm -rw-r--r-- root/root 2593 2020-11-25 19:04 ./usr/share/elk/srfi-88.scm -rw-r--r-- root/root 12138 2020-11-25 19:04 ./usr/share/elk/srfi-89.scm drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/man/man1/ -rw-r--r-- root/root 4029 2020-11-25 19:04 ./usr/share/man/man1/anfo-tool.1.gz -rw-r--r-- root/root 1616 2020-11-25 19:04 ./usr/share/man/man1/anfo.1.gz -rw-r--r-- root/root 1684 2020-11-25 19:04 ./usr/share/man/man1/dnaindex.1.gz -rw-r--r-- root/root 1202 2020-11-25 19:04 ./usr/share/man/man1/fa2dna.1.gz -rw-r--r-- root/root 634 2020-11-25 19:04 ./usr/share/man/man1/file-info.1.gz libanfo0-dbgsym_0.98-8_s390x.deb -------------------------------- new Debian package, version 2.0. size 3474468 bytes: control archive=540 bytes. 369 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libanfo0-dbgsym Source: anfo Version: 0.98-8 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 3545 Depends: libanfo0 (= 0.98-8) Section: debug Priority: optional Description: debug symbols for libanfo0 Build-Ids: 2df3d4609cc3be17be48e153c7ac712b84b0d094 drwxr-xr-x root/root 0 2020-11-25 19:04 ./ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/debug/.build-id/2d/ -rw-r--r-- root/root 3619256 2020-11-25 19:04 ./usr/lib/debug/.build-id/2d/f3d4609cc3be17be48e153c7ac712b84b0d094.debug drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-25 19:04 ./usr/share/doc/libanfo0-dbgsym -> libanfo0 libanfo0-dev_0.98-8_s390x.deb ----------------------------- new Debian package, version 2.0. size 311440 bytes: control archive=1404 bytes. 995 bytes, 22 lines control 1162 bytes, 18 lines md5sums Package: libanfo0-dev Source: anfo Version: 0.98-8 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 2124 Depends: libanfo0 (= 0.98-8), libbz2-dev, libelk0-dev, libprotobuf-dev, zlib1g-dev Conflicts: libanfo-dev Provides: libanfo-dev Section: libdevel Priority: optional Homepage: https://bioinf.eva.mpg.de/anfo/ Description: Development files for Short Read Aligner/Mapper from MPG Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead). . This package contains the development files that might be used in connection with the anfo binaries. drwxr-xr-x root/root 0 2020-11-25 19:04 ./ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/include/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/include/anfo/ -rw-r--r-- root/root 14361 2020-11-25 19:04 ./usr/include/anfo/align.h -rw-r--r-- root/root 2595 2020-11-25 19:04 ./usr/include/anfo/align_fwd.h -rw-r--r-- root/root 3399 2020-11-25 19:04 ./usr/include/anfo/anfo_common.h -rw-r--r-- root/root 11973 2020-11-25 19:04 ./usr/include/anfo/compress_stream.h -rw-r--r-- root/root 4906 2020-11-25 19:04 ./usr/include/anfo/concurrent_stream.h -rw-r--r-- root/root 2979 2020-11-25 19:04 ./usr/include/anfo/conffile.h -rw-r--r-- root/root 5051 2020-11-25 19:04 ./usr/include/anfo/ducttape.h -rw-r--r-- root/root 17630 2020-11-25 19:04 ./usr/include/anfo/index.h -rw-r--r-- root/root 5881 2020-11-25 19:04 ./usr/include/anfo/logdom.h -rw-r--r-- root/root 22028 2020-11-25 19:04 ./usr/include/anfo/misc_streams.h -rw-r--r-- root/root 5942 2020-11-25 19:04 ./usr/include/anfo/output_streams.h -rw-r--r-- root/root 14774 2020-11-25 19:04 ./usr/include/anfo/sequence.h -rw-r--r-- root/root 30889 2020-11-25 19:04 ./usr/include/anfo/stream.h -rw-r--r-- root/root 5292 2020-11-25 19:04 ./usr/include/anfo/trim.h -rw-r--r-- root/root 9473 2020-11-25 19:04 ./usr/include/anfo/util.h drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 1993558 2020-11-25 19:04 ./usr/lib/s390x-linux-gnu/libanfo.a lrwxrwxrwx root/root 0 2020-11-25 19:04 ./usr/lib/s390x-linux-gnu/libanfo.so -> libanfo.so.0.0.0 drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/doc/libanfo0-dev/ -rw-r--r-- root/root 1193 2020-11-25 19:04 ./usr/share/doc/libanfo0-dev/changelog.Debian.gz -rw-r--r-- root/root 2550 2020-11-25 19:04 ./usr/share/doc/libanfo0-dev/copyright libanfo0_0.98-8_s390x.deb ------------------------- new Debian package, version 2.0. size 249676 bytes: control archive=1088 bytes. 944 bytes, 19 lines control 219 bytes, 3 lines md5sums 29 bytes, 1 lines shlibs 67 bytes, 2 lines triggers Package: libanfo0 Source: anfo Version: 0.98-8 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 987 Depends: libbz2-1.0, libc6 (>= 2.29), libelk0, libgcc-s1 (>= 3.0), libprotobuf23 (>= 3.12.3), libstdc++6 (>= 9), zlib1g (>= 1:1.2.0) Section: libs Priority: optional Homepage: https://bioinf.eva.mpg.de/anfo/ Description: Library for Short Read Aligner/Mapper from MPG Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead). . This package contains the dynamic library for the anfo binaries. drwxr-xr-x root/root 0 2020-11-25 19:04 ./ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/lib/s390x-linux-gnu/ lrwxrwxrwx root/root 0 2020-11-25 19:04 ./usr/lib/s390x-linux-gnu/libanfo.so.0 -> libanfo.so.0.0.0 -rw-r--r-- root/root 994256 2020-11-25 19:04 ./usr/lib/s390x-linux-gnu/libanfo.so.0.0.0 drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-25 19:04 ./usr/share/doc/libanfo0/ -rw-r--r-- root/root 1193 2020-11-25 19:04 ./usr/share/doc/libanfo0/changelog.Debian.gz -rw-r--r-- root/root 2550 2020-11-25 19:04 ./usr/share/doc/libanfo0/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [593 B] Get:5 copy:/<>/apt_archive ./ Packages [682 B] Fetched 2238 B in 0s (88.0 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:s390x t1utils unzip 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1~rc3-1 [73.7 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1~rc3-1 [168 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.33.0-1 [790 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1 [13.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b4 [71.9 kB] Get:11 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0.62-1+b3 [45.7 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b6 [38.1 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.24-1 [16.2 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.25-1+b1 [129 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1 [18.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1 [14.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b6 [63.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1 [11.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.110-1 [10.6 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.00-4+b1 [38.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1 [12.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1 [21.8 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004004-1 [59.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-1 [53.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012000-1 [348 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.05-1 [90.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7539 kB in 0s (32.7 MB/s) Selecting previously unselected package readline-common. (Reading database ... 22586 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1~rc3-1_all.deb ... Unpacking readline-common (8.1~rc3-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.1~rc3-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1~rc3-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.33.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.33.0-1) ... Selecting previously unselected package gpg. Preparing to unpack .../06-gpg_2.2.20-1_amd64.deb ... Unpacking gpg (2.2.20-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../07-libaliased-perl_0.34-1_all.deb ... Unpacking libaliased-perl (0.34-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.36+b4_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b4) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b3_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b3) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../10-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../11-libdevel-callchecker-perl_0.008-1+b2_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b2) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../12-libparams-classify-perl_0.015-1+b3_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../13-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../14-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../15-libmodule-implementation-perl_0.09-1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../16-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../17-libvariable-magic-perl_0.62-1+b3_amd64.deb ... Unpacking libvariable-magic-perl (0.62-1+b3) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../18-libb-hooks-endofscope-perl_0.24-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.24-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../19-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../20-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../21-libclass-method-modifiers-perl_2.13-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../22-libclass-xsaccessor-perl_1.19-3+b6_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b6) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../23-libclone-perl_0.45-1+b1_amd64.deb ... Unpacking libclone-perl (0.45-1+b1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../24-libconfig-tiny-perl_2.24-1_all.deb ... Unpacking libconfig-tiny-perl (2.24-1) ... Selecting previously unselected package libcpanel-json-xs-perl. Preparing to unpack .../25-libcpanel-json-xs-perl_4.25-1+b1_amd64.deb ... Unpacking libcpanel-json-xs-perl (4.25-1+b1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../26-libdevel-stacktrace-perl_2.0400-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../27-libexception-class-perl_1.44-1_all.deb ... Unpacking libexception-class-perl (1.44-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../28-libiterator-perl_0.03+ds1-1_all.deb ... Unpacking libiterator-perl (0.03+ds1-1) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../29-libiterator-util-perl_0.02+ds1-1_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../30-libexporter-tiny-perl_1.002002-1_all.deb ... Unpacking libexporter-tiny-perl (1.002002-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../31-liblist-moreutils-perl_0.416-1+b6_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b6) ... Selecting previously unselected package libparams-util-perl. 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Unpacking libdata-messagepack-perl (1.00-4+b1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../38-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libdata-validate-domain-perl. Preparing to unpack .../39-libdata-validate-domain-perl_0.10-1_all.deb ... Unpacking libdata-validate-domain-perl (0.10-1) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../40-libdevel-size-perl_0.83-1+b2_amd64.deb ... Unpacking libdevel-size-perl (0.83-1+b2) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../41-libemail-address-xs-perl_1.04-1+b3_amd64.deb ... Unpacking libemail-address-xs-perl (1.04-1+b3) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../42-libipc-system-simple-perl_1.30-1_all.deb ... Unpacking libipc-system-simple-perl (1.30-1) ... 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Unpacking libhtml-html5-entities-perl (0.004-1) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../49-libimport-into-perl_1.002005-1_all.deb ... Unpacking libimport-into-perl (1.002005-1) ... Selecting previously unselected package libipc-run3-perl. Preparing to unpack .../50-libipc-run3-perl_0.048-2_all.deb ... Unpacking libipc-run3-perl (0.048-2) ... Selecting previously unselected package libjson-maybexs-perl. Preparing to unpack .../51-libjson-maybexs-perl_1.004003-1_all.deb ... Unpacking libjson-maybexs-perl (1.004003-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../52-liblist-compare-perl_0.55-1_all.deb ... Unpacking liblist-compare-perl (0.55-1) ... Selecting previously unselected package liblist-utilsby-perl. Preparing to unpack .../53-liblist-utilsby-perl_0.11-1_all.deb ... Unpacking liblist-utilsby-perl (0.11-1) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../54-liblzo2-2_2.10-2_amd64.deb ... Unpacking liblzo2-2:amd64 (2.10-2) ... Selecting previously unselected package libmarkdown2:amd64. Preparing to unpack .../55-libmarkdown2_2.2.6-1_amd64.deb ... Unpacking libmarkdown2:amd64 (2.2.6-1) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../56-librole-tiny-perl_2.001004-1_all.deb ... Unpacking librole-tiny-perl (2.001004-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../57-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../58-libsub-quote-perl_2.006006-1_all.deb ... Unpacking libsub-quote-perl (2.006006-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../59-libmoo-perl_2.004004-1_all.deb ... Unpacking libmoo-perl (2.004004-1) ... Selecting previously unselected package libmoox-aliases-perl. Preparing to unpack .../60-libmoox-aliases-perl_0.001006-1_all.deb ... Unpacking libmoox-aliases-perl (0.001006-1) ... Selecting previously unselected package libmouse-perl. Preparing to unpack .../61-libmouse-perl_2.5.10-1+b1_amd64.deb ... Unpacking libmouse-perl (2.5.10-1+b1) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../62-libpackage-stash-perl_0.39-1_all.deb ... Unpacking libpackage-stash-perl (0.39-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../63-libsub-identify-perl_0.14-1+b3_amd64.deb ... Unpacking libsub-identify-perl (0.14-1+b3) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../64-libsub-name-perl_0.26-1+b1_amd64.deb ... Unpacking libsub-name-perl (0.26-1+b1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../65-libnamespace-clean-perl_0.27-1_all.deb ... Unpacking libnamespace-clean-perl (0.27-1) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../66-libpath-tiny-perl_0.114-1_all.deb ... Unpacking libpath-tiny-perl (0.114-1) ... Selecting previously unselected package libperlio-gzip-perl. Preparing to unpack .../67-libperlio-gzip-perl_0.19-1+b7_amd64.deb ... Unpacking libperlio-gzip-perl (0.19-1+b7) ... Selecting previously unselected package libproc-processtable-perl. Preparing to unpack .../68-libproc-processtable-perl_0.59-2+b1_amd64.deb ... Unpacking libproc-processtable-perl (0.59-2+b1) ... Selecting previously unselected package libsereal-decoder-perl. Preparing to unpack .../69-libsereal-decoder-perl_4.018+ds-1+b1_amd64.deb ... Unpacking libsereal-decoder-perl (4.018+ds-1+b1) ... Selecting previously unselected package libsereal-encoder-perl. Preparing to unpack .../70-libsereal-encoder-perl_4.018+ds-1+b1_amd64.deb ... Unpacking libsereal-encoder-perl (4.018+ds-1+b1) ... Selecting previously unselected package libtext-levenshteinxs-perl. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 160544 Build-Time: 194 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 42 Job: anfo_0.98-8 Lintian: pass Machine Architecture: amd64 Package: anfo Package-Time: 247 Source-Version: 0.98-8 Space: 160544 Status: successful Version: 0.98-8 -------------------------------------------------------------------------------- Finished at 2020-12-02T16:50:18Z Build needed 00:04:07, 160544k disk space