sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | anfo 0.98-9 (mips64el) Wed, 20 Oct 2021 23:20:51 +0000 | +==============================================================================+ Package: anfo Version: 0.98-9 Source Version: 0.98-9 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-1b3dff40-7158-4e99-b59a-40ac6fcf2b69' with '<>' I: NOTICE: Log filtering will replace 'build/anfo-3oEc2E/resolver-gmWMbM' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-10-20-2007.27-F-2021-10-20-0801.54.pdiff [34.3 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-10-20-2007.27-F-2021-10-20-0801.54.pdiff [34.3 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-10-20-2007.27-F-2021-10-20-0801.54.pdiff [46.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-10-20-2007.27-F-2021-10-20-0801.54.pdiff [46.8 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [8473 kB] Fetched 8846 kB in 4s (2417 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgdbm-compat4 libgdbm6 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 138 kB of archives. After this operation, 6144 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libgdbm6 amd64 1.22-1 [82.1 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libgdbm-compat4 amd64 1.22-1 [56.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 138 kB in 0s (10.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10546 files and directories currently installed.) Preparing to unpack .../libgdbm6_1.22-1_amd64.deb ... Unpacking libgdbm6:amd64 (1.22-1) over (1.21-1) ... Preparing to unpack .../libgdbm-compat4_1.22-1_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.22-1) over (1.21-1) ... Setting up libgdbm6:amd64 (1.22-1) ... Setting up libgdbm-compat4:amd64 (1.22-1) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'anfo' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/anfo.git Please use: git clone https://salsa.debian.org/med-team/anfo.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 472 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main anfo 0.98-9 (dsc) [2105 B] Get:2 http://debian.oregonstate.edu/debian unstable/main anfo 0.98-9 (tar) [462 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main anfo 0.98-9 (diff) [7952 B] Fetched 472 kB in 0s (7964 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/anfo-3oEc2E/anfo-0.98' with '<>' I: NOTICE: Log filtering will replace 'build/anfo-3oEc2E' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [457 B] Get:5 copy:/<>/apt_archive ./ Packages [549 B] Fetched 1963 B in 0s (75.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-11-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-11-base:mips64el gcc-11-cross-base-mipsen gcc-11-mips64el-linux-gnuabi64 gcc-11-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbsd0 libbsd0:mips64el libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf-dev:mips64el libelf1 libelf1:mips64el libelk0:mips64el libelk0-dev:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mips64el libgcc-11-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libice-dev:mips64el libice6:mips64el libicu67 libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el liblocale-gettext-perl libmagic-mgc libmagic1 libmd0 libmd0:mips64el libnsl-dev libnsl-dev:mips64el libnsl2:mips64el libperl5.32 libpipeline1 libpopt-dev:mips64el libpopt0:mips64el libprotobuf-dev:mips64el libprotobuf-lite23:mips64el libprotobuf23 libprotobuf23:mips64el libprotoc23 libpthread-stubs0-dev libpthread-stubs0-dev:mips64el libsigsegv2 libsm-dev:mips64el libsm6:mips64el libssl1.1:mips64el libstdc++-11-dev libstdc++-11-dev:mips64el libstdc++-11-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtirpc-dev libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libuuid1:mips64el libx11-6 libx11-6:mips64el libx11-data libx11-dev libx11-dev:mips64el libxau-dev libxau-dev:mips64el libxau6 libxau6:mips64el libxcb1 libxcb1:mips64el libxcb1-dev libxcb1-dev:mips64el libxdmcp-dev libxdmcp-dev:mips64el libxdmcp6 libxdmcp6:mips64el libxext-dev:mips64el libxext6:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu-dev:mips64el libxmu-headers libxmu6:mips64el libxt-dev:mips64el libxt6:mips64el libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.32 pkg-config po-debconf protobuf-compiler rpcsvc-proto sensible-utils ucf x11-common x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-11-multilib gcc-11-doc g++-11-multilib-mips64el-linux-gnuabi64 gcc-11-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el libnss-nis:mips64el libnss-nisplus:mips64el glibc-doc manpages-dev:mips64el gnupg git bzr krb5-doc:mips64el krb5-user:mips64el libice-doc:mips64el libsm-doc:mips64el libstdc++-11-doc libstdc++-11-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libx11-doc:mips64el libxcb-doc libxcb-doc:mips64el libxext-doc:mips64el libxt-doc:mips64el libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl protobuf-mode-el Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx bzip2-doc:mips64el libidn2-0:mips64el libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:mips64el libltdl-dev uuid-runtime:mips64el libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl libprotobuf-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-11-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-11-base:mips64el gcc-11-cross-base-mipsen gcc-11-mips64el-linux-gnuabi64 gcc-11-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbsd0 libbsd0:mips64el libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf-dev:mips64el libelf1 libelf1:mips64el libelk0:mips64el libelk0-dev:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mips64el libgcc-11-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libice-dev:mips64el libice6:mips64el libicu67 libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el liblocale-gettext-perl libmagic-mgc libmagic1 libmd0 libmd0:mips64el libnsl-dev libnsl-dev:mips64el libnsl2:mips64el libperl5.32 libpipeline1 libpopt-dev:mips64el libpopt0:mips64el libprotobuf-dev:mips64el libprotobuf-lite23:mips64el libprotobuf23 libprotobuf23:mips64el libprotoc23 libpthread-stubs0-dev libpthread-stubs0-dev:mips64el libsigsegv2 libsm-dev:mips64el libsm6:mips64el libssl1.1:mips64el libstdc++-11-dev libstdc++-11-dev:mips64el libstdc++-11-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtirpc-dev libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libuuid1:mips64el libx11-6 libx11-6:mips64el libx11-data libx11-dev libx11-dev:mips64el libxau-dev libxau-dev:mips64el libxau6 libxau6:mips64el libxcb1 libxcb1:mips64el libxcb1-dev libxcb1-dev:mips64el libxdmcp-dev libxdmcp-dev:mips64el libxdmcp6 libxdmcp6:mips64el libxext-dev:mips64el libxext6:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu-dev:mips64el libxmu-headers libxmu6:mips64el libxt-dev:mips64el libxt6:mips64el libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.32 pkg-config po-debconf protobuf-compiler rpcsvc-proto sbuild-build-depends-main-dummy:mips64el sensible-utils ucf x11-common x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 162 newly installed, 0 to remove and 0 not upgraded. Need to get 268 MB of archives. After this operation, 959 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [972 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-4 [143 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-7 [935 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-6 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-11-base mips64el 11.2.0-9 [205 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.4-2 [819 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.37-4cross4 [2447 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-2 [104 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.32-4 [2251 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.2.0-9 [1949 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.2.0-9 [49.7 MB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-mips64el-linux-gnuabi64-base amd64 11.2.0-9cross1 [206 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-mips64el-linux-gnuabi64 amd64 11.2.0-9cross1 [45.9 MB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:11.2.0-2 [16.9 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base-mipsen all 11.2.0-9cross1 [201 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.32-1cross3 [1316 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mips64el-cross all 11.2.0-9cross1 [70.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 11.2.0-9cross1 [92.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 11.2.0-9cross1 [7360 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-mips64el-cross all 11.2.0-9cross1 [281 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-mips64el-linux-gnuabi64 amd64 11.2.0-9cross1 [51.6 MB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:11.2.0-2 [1476 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 11.2.0-9cross1 [468 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.10.46-4cross3 [1460 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.32-1cross3 [2104 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-mips64el-cross all 11.2.0-9cross1 [1990 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-mips64el-linux-gnuabi64 amd64 11.2.0-9cross1 [50.1 MB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:11.2.0-2 [1188 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-5 [696 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.102 [18.2 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.5.2 [192 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.5.2 [1056 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 11.2.0-9 [69.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.32-4 [2550 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 11.2.0-9 [7460 B] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libmd0 amd64 1.0.4-1 [29.6 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mips64el libmd0 mips64el 1.0.4-1 [29.4 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mips64el libbsd0 mips64el 0.11.3-1 [106 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-1.0 mips64el 1.0.8-4 [47.5 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.14.12-1 [1426 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.25-2 [95.0 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.25-2 [114 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mips64el libcom-err2 mips64el 1.46.4-1 [75.0 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5support0 mips64el 1.18.3-7 [63.5 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mips64el libk5crypto3 mips64el 1.18.3-7 [120 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mips64el libkeyutils1 mips64el 1.6.1-2 [15.0 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mips64el libssl1.1 mips64el 1.1.1l-1 [1151 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5-3 mips64el 1.18.3-7 [329 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mips64el libgssapi-krb5-2 mips64el 1.18.3-7 [150 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mips64el libtirpc3 mips64el 1.3.2-2 [74.4 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mips64el libnsl2 mips64el 1.3.0-2 [35.5 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mips64el libtirpc-dev mips64el 1.3.2-2 [199 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mips64el libnsl-dev mips64el 1.3.0-2 [70.3 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.32-4 [2107 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-dev mips64el 1.0.8-4 [33.2 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-2 [88.2 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main mips64el libelf1 mips64el 0.185-2 [170 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-2 [191 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main mips64el libelf-dev mips64el 0.185-2 [81.1 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main mips64el libice6 mips64el 2:1.0.10-1 [53.0 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main mips64el libuuid1 mips64el 2.37.2-4 [85.0 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main mips64el libsm6 mips64el 2:1.2.3-1 [33.6 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main mips64el libxau6 mips64el 1:1.0.9-1 [19.6 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main mips64el libxdmcp6 mips64el 1:1.1.2-3 [26.1 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb1 mips64el 1.14-3 [132 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.7.2-2 [311 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main mips64el libx11-6 mips64el 2:1.7.2-2+b1 [729 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main mips64el libxext6 mips64el 2:1.3.4-1 [49.8 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main mips64el libxt6 mips64el 1:1.2.0-1 [165 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main mips64el libxmu6 mips64el 2:1.1.2-2+b3 [56.3 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main mips64el libelk0 mips64el 3.99.8-4.2+b1 [149 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2021.5-1 [599 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main mips64el libxau-dev mips64el 1:1.0.9-1 [23.5 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main mips64el libxdmcp-dev mips64el 1:1.1.2-3 [42.9 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main mips64el libpthread-stubs0-dev mips64el 0.4-1 [5352 B] Get:131 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb1-dev mips64el 1.14-3 [180 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main mips64el libx11-dev mips64el 2:1.7.2-2+b1 [855 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main mips64el libxext-dev mips64el 2:1.3.4-1 [110 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main mips64el libice-dev mips64el 2:1.0.10-1 [69.2 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main mips64el libsm-dev mips64el 2:1.2.3-1 [38.6 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main mips64el libxt-dev mips64el 1:1.2.0-1 [416 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.7.2-2+b1 [772 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get:144 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1-dev amd64 1.14-3 [176 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-dev amd64 2:1.7.2-2+b1 [844 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu-headers all 2:1.1.2-2 [51.9 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main mips64el libxmu-dev mips64el 2:1.1.2-2+b3 [70.2 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main mips64el libelk0-dev mips64el 3.99.8-4.2+b1 [211 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 11.2.0-9 [94.5 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-11-dev mips64el 11.2.0-9 [280 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.70.0-1+b1 [1402 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main mips64el libpopt0 mips64el 1.18-3 [48.2 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main mips64el libpopt-dev mips64el 1.18-3 [57.5 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 11.2.0-9 [509 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main mips64el libprotobuf23 mips64el 3.12.4-1 [733 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main mips64el libprotobuf-lite23 mips64el 3.12.4-1 [208 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main mips64el libprotobuf-dev mips64el 3.12.4-1 [1318 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main amd64 libprotobuf23 amd64 3.12.4-1 [892 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main amd64 libprotoc23 amd64 3.12.4-1 [803 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-11-dev mips64el 11.2.0-9 [1982 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main amd64 protobuf-compiler amd64 3.12.4-1 [75.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 268 MB in 2s (126 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10546 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-4_amd64.deb ... Unpacking bsdextrautils (2.37.2-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../006-libperl5.32_5.32.1-6_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-6) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.32.1-6_amd64.deb ... Unpacking perl (5.32.1-6) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-11-base:mips64el. Preparing to unpack .../009-gcc-11-base_11.2.0-9_mips64el.deb ... Unpacking gcc-11-base:mips64el (11.2.0-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../010-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../011-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../012-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../013-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../016-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../017-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../018-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../019-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../020-automake_1%3a1.16.4-2_all.deb ... Unpacking automake (1:1.16.4-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../021-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package binutils-mips64el-linux-gnuabi64. Preparing to unpack .../022-binutils-mips64el-linux-gnuabi64_2.37-4cross4_amd64.deb ... Unpacking binutils-mips64el-linux-gnuabi64 (2.37-4cross4) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../023-libcrypt-dev_1%3a4.4.25-2_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.25-2) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../024-libtirpc-dev_1.3.2-2_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.2-2) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../025-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package rpcsvc-proto. Preparing to unpack .../026-rpcsvc-proto_1.4.2-4_amd64.deb ... Unpacking rpcsvc-proto (1.4.2-4) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../027-libc6-dev_2.32-4_amd64.deb ... Unpacking libc6-dev:amd64 (2.32-4) ... Selecting previously unselected package libstdc++-11-dev:amd64. Preparing to unpack .../028-libstdc++-11-dev_11.2.0-9_amd64.deb ... Unpacking libstdc++-11-dev:amd64 (11.2.0-9) ... Selecting previously unselected package g++-11. Preparing to unpack .../029-g++-11_11.2.0-9_amd64.deb ... Unpacking g++-11 (11.2.0-9) ... Selecting previously unselected package g++. Preparing to unpack .../030-g++_4%3a11.2.0-2_amd64.deb ... Unpacking g++ (4:11.2.0-2) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../031-libdpkg-perl_1.20.9_all.deb ... Unpacking libdpkg-perl (1.20.9) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../032-dpkg-dev_1.20.9_all.deb ... Unpacking dpkg-dev (1.20.9) ... Selecting previously unselected package build-essential. Preparing to unpack .../033-build-essential_12.9_amd64.deb ... Unpacking build-essential (12.9) ... Selecting previously unselected package gcc-11-mips64el-linux-gnuabi64-base:amd64. Preparing to unpack .../034-gcc-11-mips64el-linux-gnuabi64-base_11.2.0-9cross1_amd64.deb ... Unpacking gcc-11-mips64el-linux-gnuabi64-base:amd64 (11.2.0-9cross1) ... Selecting previously unselected package cpp-11-mips64el-linux-gnuabi64. Preparing to unpack .../035-cpp-11-mips64el-linux-gnuabi64_11.2.0-9cross1_amd64.deb ... Unpacking cpp-11-mips64el-linux-gnuabi64 (11.2.0-9cross1) ... Selecting previously unselected package cpp-mips64el-linux-gnuabi64. Preparing to unpack .../036-cpp-mips64el-linux-gnuabi64_4%3a11.2.0-2_amd64.deb ... Unpacking cpp-mips64el-linux-gnuabi64 (4:11.2.0-2) ... Selecting previously unselected package cross-config. Preparing to unpack .../037-cross-config_2.6.18+nmu2_all.deb ... Unpacking cross-config (2.6.18+nmu2) ... Selecting previously unselected package gcc-11-cross-base-mipsen. Preparing to unpack .../038-gcc-11-cross-base-mipsen_11.2.0-9cross1_all.deb ... Unpacking gcc-11-cross-base-mipsen (11.2.0-9cross1) ... Selecting previously unselected package libc6-mips64el-cross. Preparing to unpack .../039-libc6-mips64el-cross_2.32-1cross3_all.deb ... Unpacking libc6-mips64el-cross (2.32-1cross3) ... Selecting previously unselected package libgcc-s1-mips64el-cross. Preparing to unpack .../040-libgcc-s1-mips64el-cross_11.2.0-9cross1_all.deb ... Unpacking libgcc-s1-mips64el-cross (11.2.0-9cross1) ... Selecting previously unselected package libgomp1-mips64el-cross. Preparing to unpack .../041-libgomp1-mips64el-cross_11.2.0-9cross1_all.deb ... Unpacking libgomp1-mips64el-cross (11.2.0-9cross1) ... Selecting previously unselected package libatomic1-mips64el-cross. Preparing to unpack .../042-libatomic1-mips64el-cross_11.2.0-9cross1_all.deb ... Unpacking libatomic1-mips64el-cross (11.2.0-9cross1) ... Selecting previously unselected package libgcc-11-dev-mips64el-cross. Preparing to unpack .../043-libgcc-11-dev-mips64el-cross_11.2.0-9cross1_all.deb ... Unpacking libgcc-11-dev-mips64el-cross (11.2.0-9cross1) ... Selecting previously unselected package gcc-11-mips64el-linux-gnuabi64. Preparing to unpack .../044-gcc-11-mips64el-linux-gnuabi64_11.2.0-9cross1_amd64.deb ... Unpacking gcc-11-mips64el-linux-gnuabi64 (11.2.0-9cross1) ... Selecting previously unselected package gcc-mips64el-linux-gnuabi64. Preparing to unpack .../045-gcc-mips64el-linux-gnuabi64_4%3a11.2.0-2_amd64.deb ... Unpacking gcc-mips64el-linux-gnuabi64 (4:11.2.0-2) ... Selecting previously unselected package libstdc++6-mips64el-cross. Preparing to unpack .../046-libstdc++6-mips64el-cross_11.2.0-9cross1_all.deb ... Unpacking libstdc++6-mips64el-cross (11.2.0-9cross1) ... Selecting previously unselected package linux-libc-dev-mips64el-cross. Preparing to unpack .../047-linux-libc-dev-mips64el-cross_5.10.46-4cross3_all.deb ... Unpacking linux-libc-dev-mips64el-cross (5.10.46-4cross3) ... Selecting previously unselected package libc6-dev-mips64el-cross. Preparing to unpack .../048-libc6-dev-mips64el-cross_2.32-1cross3_all.deb ... Unpacking libc6-dev-mips64el-cross (2.32-1cross3) ... Selecting previously unselected package libstdc++-11-dev-mips64el-cross. Preparing to unpack .../049-libstdc++-11-dev-mips64el-cross_11.2.0-9cross1_all.deb ... Unpacking libstdc++-11-dev-mips64el-cross (11.2.0-9cross1) ... Selecting previously unselected package g++-11-mips64el-linux-gnuabi64. Preparing to unpack .../050-g++-11-mips64el-linux-gnuabi64_11.2.0-9cross1_amd64.deb ... Unpacking g++-11-mips64el-linux-gnuabi64 (11.2.0-9cross1) ... Selecting previously unselected package g++-mips64el-linux-gnuabi64. Preparing to unpack .../051-g++-mips64el-linux-gnuabi64_4%3a11.2.0-2_amd64.deb ... Unpacking g++-mips64el-linux-gnuabi64 (4:11.2.0-2) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../052-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../053-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../054-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../055-libxml2_2.9.12+dfsg-5_amd64.deb ... 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Setting up bsdextrautils (2.37.2-4) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libglib2.0-0:amd64 (2.70.0-1+b1) ... No schema files found: doing nothing. Setting up perl-modules-5.32 (5.32.1-6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of restart. Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:mips64el (5.14.12-1) ... Setting up libc6-mips64el-cross (2.32-1cross3) ... Setting up gettext-base (0.21-4) ... Setting up libprotobuf23:amd64 (3.12.4-1) ... Setting up file (1:5.39-3) ... Setting up binutils-mips64el-linux-gnuabi64 (2.37-4cross4) ... Setting up libpthread-stubs0-dev:amd64 (0.4-1) ... Setting up libpthread-stubs0-dev:mips64el (0.4-1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up libx11-data (2:1.7.2-2) ... Setting up libprotoc23:amd64 (3.12.4-1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up d-shlibs (0.102) ... Setting up gcc-11-mips64el-linux-gnuabi64-base:amd64 (11.2.0-9cross1) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up libmd0:amd64 (1.0.4-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.25-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.32-4) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up linux-libc-dev-mips64el-cross (5.10.46-4cross3) ... Setting up cpp-11-mips64el-linux-gnuabi64 (11.2.0-9cross1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:11.2.0-2) ... Setting up libgomp1-mips64el-cross (11.2.0-9cross1) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libgcc-s1-mips64el-cross (11.2.0-9cross1) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up x11proto-dev (2021.5-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libatomic1-mips64el-cross (11.2.0-9cross1) ... Setting up libxau-dev:amd64 (1:1.0.9-1) ... Setting up protobuf-compiler (3.12.4-1) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up perl (5.32.1-6) ... Setting up libc6-dev-mips64el-cross (2.32-1cross3) ... Setting up libgcc-11-dev-mips64el-cross (11.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up autoconf (2.71-2) ... Setting up libstdc++6-mips64el-cross (11.2.0-9cross1) ... Setting up libstdc++-11-dev:amd64 (11.2.0-9) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up libsub-override-perl (0.09-2) ... Setting up libx11-6:amd64 (2:1.7.2-2+b1) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up libxcb1-dev:amd64 (1.14-3) ... Setting up g++-11 (11.2.0-9) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.2) ... Setting up libx11-dev:amd64 (2:1.7.2-2+b1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up libstdc++-11-dev-mips64el-cross (11.2.0-9cross1) ... Setting up gcc-11-mips64el-linux-gnuabi64 (11.2.0-9cross1) ... Setting up pkg-config (0.29.2-1) ... Setting up gcc-mips64el-linux-gnuabi64 (4:11.2.0-2) ... Setting up g++ (4:11.2.0-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.9) ... Setting up g++-11-mips64el-linux-gnuabi64 (11.2.0-9cross1) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:11.2.0-2) ... Setting up libxmu-headers (2:1.1.2-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up debhelper (13.5.2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libgcc-s1:mips64el (11.2.0-9) ... Setting up libc6:mips64el (2.32-4) ... Setting up libmd0:mips64el (1.0.4-1) ... Setting up libbz2-1.0:mips64el (1.0.8-4) ... Setting up libbsd0:mips64el (0.11.3-1) ... Setting up libstdc++6:mips64el (11.2.0-9) ... Setting up libpopt0:mips64el (1.18-3) ... Setting up libice6:mips64el (2:1.0.10-1) ... Setting up libxau6:mips64el (1:1.0.9-1) ... Setting up libxdmcp6:mips64el (1:1.1.2-3) ... Setting up libkeyutils1:mips64el (1.6.1-2) ... Setting up libxcb1:mips64el (1.14-3) ... Setting up libxau-dev:mips64el (1:1.0.9-1) ... Setting up libice-dev:mips64el (2:1.0.10-1) ... Setting up libssl1.1:mips64el (1.1.1l-1) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-2) ... Setting up libcrypt1:mips64el (1:4.4.25-2) ... Setting up libprotobuf23:mips64el (3.12.4-1) ... Setting up libcom-err2:mips64el (1.46.4-1) ... Setting up libgomp1:mips64el (11.2.0-9) ... Setting up libkrb5support0:mips64el (1.18.3-7) ... Setting up libxdmcp-dev:mips64el (1:1.1.2-3) ... Setting up libprotobuf-lite23:mips64el (3.12.4-1) ... Setting up libatomic1:mips64el (11.2.0-9) ... Setting up libuuid1:mips64el (2.37.2-4) ... Setting up libk5crypto3:mips64el (1.18.3-7) ... Setting up libgcc-11-dev:mips64el (11.2.0-9) ... Setting up libcrypt-dev:mips64el (1:4.4.25-2) ... Setting up libx11-6:mips64el (2:1.7.2-2+b1) ... Setting up libkrb5-3:mips64el (1.18.3-7) ... Setting up libelf1:mips64el (0.185-2) ... Setting up libsm6:mips64el (2:1.2.3-1) ... Setting up libxcb1-dev:mips64el (1.14-3) ... Setting up libsm-dev:mips64el (2:1.2.3-1) ... Setting up libx11-dev:mips64el (2:1.7.2-2+b1) ... Setting up libxext6:mips64el (2:1.3.4-1) ... Setting up libgssapi-krb5-2:mips64el (1.18.3-7) ... Setting up libxt6:mips64el (1:1.2.0-1) ... Setting up libxext-dev:mips64el (2:1.3.4-1) ... Setting up libtirpc3:mips64el (1.3.2-2) ... Setting up libxmu6:mips64el (2:1.1.2-2+b3) ... Setting up libtirpc-dev:mips64el (1.3.2-2) ... Setting up libxt-dev:mips64el (1:1.2.0-1) ... Setting up libelk0:mips64el (3.99.8-4.2+b1) ... Setting up libnsl2:mips64el (1.3.0-2) ... Setting up libxmu-dev:mips64el (2:1.1.2-2+b3) ... Setting up libnsl-dev:mips64el (1.3.0-2) ... Setting up libc6-dev:mips64el (2.32-4) ... Setting up libbz2-dev:mips64el (1.0.8-4) ... Setting up libpopt-dev:mips64el (1.18-3) ... Setting up libstdc++-11-dev:mips64el (11.2.0-9) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-2) ... Setting up libprotobuf-dev:mips64el (3.12.4-1) ... Setting up libelf-dev:mips64el (0.185-2) ... Setting up libelk0-dev:mips64el (3.99.8-4.2+b1) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-9 gcc-11_11.2.0-9 libc6-dev_2.32-4 libstdc++-11-dev_11.2.0-9 libstdc++-11-dev-mips64el-cross_11.2.0-9cross1 libstdc++6_11.2.0-9 libstdc++6-mips64el-cross_11.2.0-9cross1 linux-libc-dev_5.14.12-1 Package versions: adduser_3.118 apt_2.3.10 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 binutils_2.37-7 binutils-common_2.37-7 binutils-mips64el-linux-gnuabi64_2.37-4cross4 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:11.2.0-2 cpp-11_11.2.0-9 cpp-11-mips64el-linux-gnuabi64_11.2.0-9cross1 cpp-8_8.4.0-7 cpp-mips64el-linux-gnuabi64_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-mips64el_12.9 d-shlibs_0.102 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.26-1 fdisk_2.37.2-4 file_1:5.39-3 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-9 g++-11-mips64el-linux-gnuabi64_11.2.0-9cross1 g++-mips64el-linux-gnuabi64_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-11 gcc-11_11.2.0-9 gcc-11-base_11.2.0-9 gcc-11-cross-base-mipsen_11.2.0-9cross1 gcc-11-mips64el-linux-gnuabi64_11.2.0-9cross1 gcc-11-mips64el-linux-gnuabi64-base_11.2.0-9cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-3 gcc-mips64el-linux-gnuabi64_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.10 libarchive-zip-perl_1.68-1 libasan5_9.4.0-3 libasan6_11.2.0-9 libatomic1_11.2.0-9 libatomic1-mips64el-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-7 libblkid1_2.37.2-4 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-dev_2.32-4 libc6-dev-mips64el-cross_2.32-1cross3 libc6-mips64el-cross_2.32-1cross3 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-9 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.20.9 libelf-dev_0.185-2 libelf1_0.185-2 libelk0_3.99.8-4.2+b1 libelk0-dev_3.99.8-4.2+b1 libext2fs2_1.46.4-1 libfakeroot_1.26-1 libfdisk1_2.37.2-4 libffi6_3.2.1-9 libffi8_3.4.2-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libgcc-11-dev_11.2.0-9 libgcc-11-dev-mips64el-cross_11.2.0-9cross1 libgcc-s1_11.2.0-9 libgcc-s1-mips64el-cross_11.2.0-9cross1 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libglib2.0-0_2.70.0-1+b1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-9 libgomp1-mips64el-cross_11.2.0-9cross1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.3-1 libice-dev_2:1.0.10-1 libice6_2:1.0.10-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.24-2 libitm1_11.2.0-9 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-9 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.4-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncursesw6_6.2+20210905-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libpopt-dev_1.18-3 libpopt0_1.18-3 libprotobuf-dev_3.12.4-1 libprotobuf-lite23_3.12.4-1 libprotobuf23_3.12.4-1 libprotoc23_3.12.4-1 libpthread-stubs0-dev_0.4-1 libquadmath0_11.2.0-9 libreadline8_8.1-2 libseccomp2_2.5.2-2 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.37.2-4 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-9 libstdc++-11-dev-mips64el-cross_11.2.0-9cross1 libstdc++6_11.2.0-9 libstdc++6-mips64el-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_249.5-1 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-9 libubsan1_11.2.0-9 libuchardet0_0.0.7-1 libudev1_249.5-1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libx11-6_2:1.7.2-2+b1 libx11-data_2:1.7.2-2 libx11-dev_2:1.7.2-2+b1 libxau-dev_1:1.0.9-1 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxcb1-dev_1.14-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.4-1 libxext6_2:1.3.4-1 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5 libxmu-dev_2:1.1.2-2+b3 libxmu-headers_2:1.1.2-2 libxmu6_2:1.1.2-2+b3 libxt-dev_1:1.2.0-1 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.14.12-1 linux-libc-dev-mips64el-cross_5.10.46-4cross3 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-6 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 protobuf-compiler_3.12.4-1 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021d-1 ucf_3.0043 util-linux_2.37.2-4 x11-common_1:7.7+23 x11proto-dev_2021.5-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: anfo Binary: anfo, libanfo0, libanfo0-dev Architecture: any Version: 0.98-9 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://bioinf.eva.mpg.de/anfo/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/anfo Vcs-Git: https://salsa.debian.org/med-team/anfo.git Build-Depends: debhelper-compat (= 13), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs Package-List: anfo deb science optional arch=any libanfo0 deb libs optional arch=any libanfo0-dev deb libdevel optional arch=any Checksums-Sha1: df0dc3bd6ac455e86cf66628434ac1587336c14c 462359 anfo_0.98.orig.tar.gz 9d0537956bf5b0c505db90957dca4fc911d418fb 7952 anfo_0.98-9.debian.tar.xz Checksums-Sha256: fdd7bfb6467872f4b9f3a3a19310f73154345689751fd965b1f4418ee0f740e7 462359 anfo_0.98.orig.tar.gz 130cf68fc7d9deeef66cdf7655eddf148a321c9bea2d24ca6dc5fcec23833b67 7952 anfo_0.98-9.debian.tar.xz Files: 17398d931375f0be94cf5543739733b8 462359 anfo_0.98.orig.tar.gz b71e9cbaca6ab43a567ee6bf3d6795ba 7952 anfo_0.98-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFdlk4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEt8A/9EB/mQ7qeZvwrkMg0+k1aPspbbzfVfxJs 8XbDmS78oOZ9Zr0CemhcEDSwUJFtXkZCIl+rSq3j+yPoqgfQTu8oTbAIX2IinCno aSfEpueQqUa7whWqlZMJHZfB52pGik03vkQp3PaA026tqewVWJs5oMoz8XkZRYbB BqcX20nT8GXuNZFNqtNXGNEpOWXLKaHvDgE9DsUQ8GoMzDKtmVS9i2FR9Ktx0c1T 72F4kUVRenlIISkCeFOBGNCiIk+bb90JXthEfPRtICTDRLnYyrV8Zo2JQCpLzW7Z CKFqPwD4XNEKQcTNRb9a/arKnEKde9AINhyzu87zUCWodPG+Hj4gjwxhhOugMzSl QYqGEd95d56BectHUYoIa2sZKhvI4BSWSQK899C+9bEjpKF6peDVXdmWGN/4EGdw gfpQhVqV55J2AcmkO0hQC3PhiWAcYzXslcodZA+yaSMT/A6cy84KW3iAabg5CsiK 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info: applying 03-include-unistd-forF_OK.patch dpkg-source: info: applying 04-reorder-template-for-new-scope-rules.patch dpkg-source: info: applying 05-autoreconf.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-1b3dff40-7158-4e99-b59a-40ac6fcf2b69 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package anfo dpkg-buildpackage: info: source version 0.98-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/anfo.substvars debian/libanfo0.substvars debian/libanfo0-dev.substvars debian/files rm -fr -- debian/anfo/ debian/tmp/ debian/libanfo0/ debian/libanfo0-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a install -d debian/.debhelper/bucket/files cp -an --reflink=auto config.guess debian/.debhelper/bucket/files/57cc3642a532babb5ec0db80ebefd7ad7dc2b110e85bdc438fe67221e6172a3f.tmp mv debian/.debhelper/bucket/files/57cc3642a532babb5ec0db80ebefd7ad7dc2b110e85bdc438fe67221e6172a3f.tmp debian/.debhelper/bucket/files/57cc3642a532babb5ec0db80ebefd7ad7dc2b110e85bdc438fe67221e6172a3f cp -f /usr/share/misc/config.guess ./config.guess cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/76dae42e342b050c73d63a4c398703beecd0915d5350e8d667abcf0f746be6e2.tmp mv debian/.debhelper/bucket/files/76dae42e342b050c73d63a4c398703beecd0915d5350e8d667abcf0f746be6e2.tmp debian/.debhelper/bucket/files/76dae42e342b050c73d63a4c398703beecd0915d5350e8d667abcf0f746be6e2 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i aclocal: overwriting 'm4/libtool.m4' with '/usr/share/aclocal/libtool.m4' aclocal: overwriting 'm4/ltoptions.m4' with '/usr/share/aclocal/ltoptions.m4' aclocal: overwriting 'm4/ltversion.m4' with '/usr/share/aclocal/ltversion.m4' aclocal: overwriting 'm4/lt~obsolete.m4' with '/usr/share/aclocal/lt~obsolete.m4' aclocal: overwriting 'm4/pkg.m4' with '/usr/share/aclocal/pkg.m4' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:8: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:8: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:8: the top level configure.ac:48: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:48: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:48: the top level configure.ac:77: warning: LT_INIT was called before AM_PROG_AR aclocal.m4:70: AM_PROG_AR is expanded from... configure.ac:77: the top level configure.ac:77: installing './ar-lib' configure.ac:12: installing './compile' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after dh_auto_configure -a install -d /<>/debian/.debhelper/generated/_source/home ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 configure: loading site script /etc/dpkg-cross/cross-config.mips64el checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mips64el-linux-gnuabi64-strip... mips64el-linux-gnuabi64-strip checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... mips64el-unknown-linux-gnuabi64 checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for mips64el-linux-gnuabi64-gcc... mips64el-linux-gnuabi64-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... yes checking for mips64el-linux-gnuabi64-gcc option to enable C11 features... none needed checking whether mips64el-linux-gnuabi64-gcc understands -c and -o together... yes checking dependency style of mips64el-linux-gnuabi64-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mips64el-linux-gnuabi64-gcc... /usr/mips64el-linux-gnuabi64/bin/ld checking if the linker (/usr/mips64el-linux-gnuabi64/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/mips64el-linux-gnuabi64-nm -B checking the name lister (/usr/bin/mips64el-linux-gnuabi64-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to mips64el-unknown-linux-gnuabi64 format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/mips64el-linux-gnuabi64/bin/ld option to reload object files... -r checking for mips64el-linux-gnuabi64-objdump... mips64el-linux-gnuabi64-objdump checking how to recognize dependent libraries... pass_all checking for mips64el-linux-gnuabi64-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for mips64el-linux-gnuabi64-ar... mips64el-linux-gnuabi64-ar checking for archiver @FILE support... @ checking for mips64el-linux-gnuabi64-strip... (cached) mips64el-linux-gnuabi64-strip checking for mips64el-linux-gnuabi64-ranlib... mips64el-linux-gnuabi64-ranlib checking command to parse /usr/bin/mips64el-linux-gnuabi64-nm -B output from mips64el-linux-gnuabi64-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mips64el-linux-gnuabi64-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mips64el-linux-gnuabi64-gcc supports -fno-rtti -fno-exceptions... no checking for mips64el-linux-gnuabi64-gcc option to produce PIC... -fPIC -DPIC checking if mips64el-linux-gnuabi64-gcc PIC flag -fPIC -DPIC works... yes checking if mips64el-linux-gnuabi64-gcc static flag -static works... yes checking if mips64el-linux-gnuabi64-gcc supports -c -o file.o... yes checking if mips64el-linux-gnuabi64-gcc supports -c -o file.o... (cached) yes checking whether the mips64el-linux-gnuabi64-gcc linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for mips64el-linux-gnuabi64-g++... mips64el-linux-gnuabi64-g++ checking whether the compiler supports GNU C++... yes checking whether mips64el-linux-gnuabi64-g++ accepts -g... yes checking for mips64el-linux-gnuabi64-g++ option to enable C++11 features... none needed checking dependency style of mips64el-linux-gnuabi64-g++... none checking how to run the C++ preprocessor... mips64el-linux-gnuabi64-g++ -E checking for ld used by mips64el-linux-gnuabi64-g++... /usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip checking if the linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) is GNU ld... yes checking whether the mips64el-linux-gnuabi64-g++ linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking for mips64el-linux-gnuabi64-g++ option to produce PIC... -fPIC -DPIC checking if mips64el-linux-gnuabi64-g++ PIC flag -fPIC -DPIC works... yes checking if mips64el-linux-gnuabi64-g++ static flag -static works... yes checking if mips64el-linux-gnuabi64-g++ supports -c -o file.o... yes checking if mips64el-linux-gnuabi64-g++ supports -c -o file.o... (cached) yes checking whether the mips64el-linux-gnuabi64-g++ linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for protoc... /usr/bin/protoc checking for library containing exp... none required checking for library containing log1p... none required checking for poptGetContext in -lpopt... yes checking for deflate in -lz... yes checking for BZ2_bzCompress in -lbz2... yes checking for Elk_Init in -lelk... yes checking for popt.h... yes checking for zlib.h... yes checking for bzlib.h... yes checking for mips64el-linux-gnuabi64-pkg-config... /usr/bin/mips64el-linux-gnuabi64-pkg-config checking pkg-config is at least version 0.9.0... yes checking for protobuf >= 2.1.0... yes checking for google/protobuf/message.h... yes checking for elk/scheme.h... yes checking for egrep... (cached) /bin/grep -E checking for fcntl.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for working volatile... yes checking for _Bool... no checking for stdbool.h that conforms to C99... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for int32_t... yes checking for int64_t... yes checking for size_t... yes checking for ssize_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for memset... yes checking for munmap... yes checking for pow... yes checking for strerror... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating man/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands checking for mips64el-linux-gnuabi64-ar... (cached) mips64el-linux-gnuabi64-ar checking the archiver (mips64el-linux-gnuabi64-ar) interface... ar dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' protoc -I. -I/usr/include --cpp_out=. config.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:648] No syntax specified for the proto file: config.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) protoc -I. -I/usr/include --cpp_out=. output.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:648] No syntax specified for the proto file: output.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) [libprotobuf WARNING google/protobuf/compiler/parser.cc:648] No syntax specified for the proto file: config.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) make all-am make[4]: Entering directory '/<>/src' mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fa2dna.o fa2dna.cc /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o align.lo align.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c align.cc -fPIC -DPIC -o .libs/align.o In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h:34:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h:97:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:54: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h: At global scope: compress_stream.h:225:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h:278:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from align.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:54: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from align.cc:21: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from align.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c align.cc -o align.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo_common.lo anfo_common.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo_common.cc -fPIC -DPIC -o .libs/anfo_common.o In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h:34:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h:97:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:54: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h: At global scope: compress_stream.h:225:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h:278:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:54: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo_common.cc:21: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo_common.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo_common.cc -o anfo_common.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o concurrent_stream.lo concurrent_stream.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c concurrent_stream.cc -fPIC -DPIC -o .libs/concurrent_stream.o In file included from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from concurrent_stream.h:23, from concurrent_stream.cc:1: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ concurrent_stream.cc: In member function ‘virtual output::Result streams::ConcurrentStream::fetch_result()’: concurrent_stream.cc:178:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 178 | auto_ptr< Result > r( outgoing_[ next_out_++ ] ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ concurrent_stream.cc: In member function ‘void streams::ConcurrentStream::dequeue(streams::Stream*)’: concurrent_stream.cc:212:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 212 | auto_ptr< Result > r( incoming_[ next_in_ ] ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from concurrent_stream.h:23, from concurrent_stream.cc:1: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c concurrent_stream.cc -o concurrent_stream.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ducttape.lo ducttape.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ducttape.cc -fPIC -DPIC -o .libs/ducttape.o In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h:34:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h:97:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:54: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h: At global scope: compress_stream.h:225:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h:278:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from ducttape.h:21, from ducttape.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:54: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from ducttape.cc:21: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.cc:21: ducttape.h:139:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 139 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from ducttape.h:20, from ducttape.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ducttape.cc -o ducttape.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o index.lo index.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c index.cc -fPIC -DPIC -o .libs/index.o libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c index.cc -o index.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o misc_streams.lo misc_streams.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c misc_streams.cc -fPIC -DPIC -o .libs/misc_streams.o In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h:34:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h:97:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:54: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h: At global scope: compress_stream.h:225:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h:278:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:54: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from misc_streams.cc:5: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ misc_streams.cc: In constructor ‘streams::RegionFilter::RegionFilter(const std::pair*, std::__cxx11::basic_string >&)’: misc_streams.cc:489:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 489 | auto_ptr< istream > deffile( p.first ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.h:20, from misc_streams.h:4, from misc_streams.cc:5: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c misc_streams.cc -o misc_streams.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o output_streams.lo output_streams.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c output_streams.cc -fPIC -DPIC -o .libs/output_streams.o In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h:34:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h:97:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:54: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h: At global scope: compress_stream.h:225:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h:278:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from output_streams.h:21, from output_streams.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:54: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.h:21, from output_streams.cc:21: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:45:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 45 | auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:72:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:123:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 123 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:138:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 138 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:149:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 149 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from output_streams.cc:21: output_streams.h:176:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 176 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/coded_stream.h:141, from config.pb.h:23, from index.h:20, from output_streams.h:20, from output_streams.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c output_streams.cc -o output_streams.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.lo sequence.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.cc -fPIC -DPIC -o .libs/sequence.o In file included from stream.h:20, from sequence.cc:23: compress_stream.h:34:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from sequence.cc:23: compress_stream.h:97:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from sequence.cc:23: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:54: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from sequence.cc:23: compress_stream.h: At global scope: compress_stream.h:225:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from sequence.cc:23: compress_stream.h:278:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from sequence.cc:23: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:54: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from sequence.cc:23: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from sequence.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.cc -o sequence.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stream.lo stream.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stream.cc -fPIC -DPIC -o .libs/stream.o In file included from stream.cc:21: compress_stream.h:34:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.cc:21: compress_stream.h:97:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:54: note: in C++11 destructors default to ‘noexcept’ In file included from stream.cc:21: compress_stream.h: At global scope: compress_stream.h:225:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.cc:21: compress_stream.h:278:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:54: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc:81:30: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | AnfoReader::AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) : is_( is ), name_( name ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc: In member function ‘virtual void streams::ChunkedWriter::put_result(const output::Result&)’: stream.cc:344:33: warning: ‘int google::protobuf::MessageLite::ByteSize() const’ is deprecated: Please use ByteSizeLong() instead [-Wdeprecated-declarations] 344 | flush_buffer( r.ByteSize() ) ; | ~~~~~~~~~~^~ In file included from /usr/include/google/protobuf/generated_enum_util.h:36, from /usr/include/google/protobuf/map.h:49, from /usr/include/google/protobuf/generated_message_table_driven.h:34, from output.pb.h:26, from stream.h:22, from misc_streams.h:4, from stream.cc:22: /usr/include/google/protobuf/message_lite.h:408:7: note: declared here 408 | int ByteSize() const { return internal::ToIntSize(ByteSizeLong()); } | ^~~~~~~~ stream.cc: At global scope: stream.cc:421:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 421 | ChunkedReader::ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) : is_( is ), name_( name ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc:1093:30: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1093 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc:1114:50: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1114 | StreamWithProgress( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, int64_t total ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc:1149:47: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1149 | StreamHolder make_input_stream_( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, bool solexa_scores, char origin, const string& genome ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc: In function ‘streams::StreamHolder streams::{anonymous}::make_input_stream_(std::auto_ptr, const string&, bool, char, const string&)’: stream.cc:1179:30: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1179 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > bs( new BunzipStream( is ) ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc:1189:30: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1189 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > zs( new InflateStream( is ) ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc: In member function ‘virtual output::Header streams::UniversalReader::fetch_header()’: stream.cc:1233:30: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1233 | std::auto_ptr< google::protobuf::io::FileInputStream > s( new google::protobuf::io::FileInputStream( fd ) ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc:1238:54: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1238 | std::auto_ptr(s), name_, st.st_size ) ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ stream.cc: At global scope: stream.cc:1378:23: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1378 | BamReader::BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from stream.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h: In instantiation of ‘void streams::write_delimited_message(google::protobuf::io::CodedOutputStream&, int, const Msg&) [with Msg = output::Header]’: stream.h:102:25: required from ‘void streams::write_delimited_message(google::protobuf::io::ZeroCopyOutputStream*, int, const Msg&) [with Msg = output::Header]’ stream.cc:322:25: required from here stream.h:88:37: warning: ‘int google::protobuf::MessageLite::ByteSize() const’ is deprecated: Please use ByteSizeLong() instead [-Wdeprecated-declarations] 88 | os.WriteVarint32( m.ByteSize() ) ; | ~~~~~~~~~~^~ In file included from /usr/include/google/protobuf/generated_enum_util.h:36, from /usr/include/google/protobuf/map.h:49, from /usr/include/google/protobuf/generated_message_table_driven.h:34, from output.pb.h:26, from stream.h:22, from misc_streams.h:4, from stream.cc:22: /usr/include/google/protobuf/message_lite.h:408:7: note: declared here 408 | int ByteSize() const { return internal::ToIntSize(ByteSizeLong()); } | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h: In instantiation of ‘void streams::write_delimited_message(google::protobuf::io::CodedOutputStream&, int, const Msg&) [with Msg = output::Footer]’: stream.h:102:25: required from ‘void streams::write_delimited_message(google::protobuf::io::ZeroCopyOutputStream*, int, const Msg&) [with Msg = output::Footer]’ stream.cc:331:25: required from here stream.h:88:37: warning: ‘int google::protobuf::MessageLite::ByteSize() const’ is deprecated: Please use ByteSizeLong() instead [-Wdeprecated-declarations] 88 | os.WriteVarint32( m.ByteSize() ) ; | ~~~~~~~~~~^~ In file included from /usr/include/google/protobuf/generated_enum_util.h:36, from /usr/include/google/protobuf/map.h:49, from /usr/include/google/protobuf/generated_message_table_driven.h:34, from output.pb.h:26, from stream.h:22, from misc_streams.h:4, from stream.cc:22: /usr/include/google/protobuf/message_lite.h:408:7: note: declared here 408 | int ByteSize() const { return internal::ToIntSize(ByteSizeLong()); } | ^~~~~~~~ In file included from misc_streams.h:4, from stream.cc:22: stream.h: In instantiation of ‘void streams::write_delimited_message(google::protobuf::io::CodedOutputStream&, int, const Msg&) [with Msg = output::Result]’: stream.h:102:25: required from ‘void streams::write_delimited_message(google::protobuf::io::ZeroCopyOutputStream*, int, const Msg&) [with Msg = output::Result]’ stream.cc:345:25: required from here stream.h:88:37: warning: ‘int google::protobuf::MessageLite::ByteSize() const’ is deprecated: Please use ByteSizeLong() instead [-Wdeprecated-declarations] 88 | os.WriteVarint32( m.ByteSize() ) ; | ~~~~~~~~~~^~ In file included from /usr/include/google/protobuf/generated_enum_util.h:36, from /usr/include/google/protobuf/map.h:49, from /usr/include/google/protobuf/generated_message_table_driven.h:34, from output.pb.h:26, from stream.h:22, from misc_streams.h:4, from stream.cc:22: /usr/include/google/protobuf/message_lite.h:408:7: note: declared here 408 | int ByteSize() const { return internal::ToIntSize(ByteSizeLong()); } | ^~~~~~~~ libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stream.cc -o stream.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.lo util.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.cc -fPIC -DPIC -o .libs/util.o libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.cc -o util.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo-elk.lo anfo-elk.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo-elk.cc -fPIC -DPIC -o .libs/anfo-elk.o In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h:34:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h:97:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:54: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h: At global scope: compress_stream.h:225:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h:278:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:54: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo-elk.cc:27: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:28: ducttape.h:139:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 139 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:45:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 45 | auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:72:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:123:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 123 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:138:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 138 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:149:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 149 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:31: output_streams.h:176:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 176 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-elk.cc:30: misc_streams.h: In instantiation of ‘void streams::SortingStream::put_result(const output::Result&) [with Comp = streams::by_seqid]’: misc_streams.h:282:16: required from here misc_streams.h:284:80: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ In file included from anfo-elk.cc:30: misc_streams.h:284:80: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ In file included from anfo-elk.cc:30: misc_streams.h: In instantiation of ‘void streams::SortingStream::put_result(const output::Result&) [with Comp = streams::by_genome_coordinate]’: misc_streams.h:282:16: required from here misc_streams.h:284:80: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ In file included from anfo-elk.cc:30: misc_streams.h:284:80: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo-elk.cc:27: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo-elk.cc -o anfo-elk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile mips64el-linux-gnuabi64-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fastlz.lo fastlz.c libtool: compile: mips64el-linux-gnuabi64-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fastlz.c -fPIC -DPIC -o .libs/fastlz.o libtool: compile: mips64el-linux-gnuabi64-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fastlz.c -o fastlz.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o config.pb.lo config.pb.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c config.pb.cc -fPIC -DPIC -o .libs/config.pb.o libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c config.pb.cc -o config.pb.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o output.pb.lo output.pb.cc libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c output.pb.cc -fPIC -DPIC -o .libs/output.pb.o libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c output.pb.cc -o output.pb.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libanfo.la -rpath /usr/lib/mips64el-linux-gnuabi64 align.lo anfo_common.lo concurrent_stream.lo ducttape.lo index.lo misc_streams.lo output_streams.lo sequence.lo stream.lo util.lo anfo-elk.lo fastlz.lo config.pb.lo output.pb.lo -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lpthread -lelk -lbz2 -lz -lpopt libtool: link: mips64el-linux-gnuabi64-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/mips64el-linux-gnuabi64/11/../../../../mips64el-linux-gnuabi64/lib/../lib/crti.o /usr/lib/gcc-cross/mips64el-linux-gnuabi64/11/crtbeginS.o .libs/align.o .libs/anfo_common.o .libs/concurrent_stream.o .libs/ducttape.o .libs/index.o .libs/misc_streams.o .libs/output_streams.o .libs/sequence.o .libs/stream.o .libs/util.o .libs/anfo-elk.o .libs/fastlz.o .libs/config.pb.o .libs/output.pb.o -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lpthread -lelk -lbz2 -lz -lpopt -L/usr/lib/gcc-cross/mips64el-linux-gnuabi64/11 -L/usr/lib/gcc-cross/mips64el-linux-gnuabi64/11/../../../../mips64el-linux-gnuabi64/lib/../lib -L/lib/mips64el-linux-gnuabi64 -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc-cross/mips64el-linux-gnuabi64/11/../../../../mips64el-linux-gnuabi64/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/mips64el-linux-gnuabi64/11/crtendS.o /usr/lib/gcc-cross/mips64el-linux-gnuabi64/11/../../../../mips64el-linux-gnuabi64/lib/../lib/crtn.o -pthread -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -Wl,-soname -Wl,libanfo.so.0 -o .libs/libanfo.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libanfo.so.0" && ln -s "libanfo.so.0.0.0" "libanfo.so.0") libtool: link: (cd ".libs" && rm -f "libanfo.so" && ln -s "libanfo.so.0.0.0" "libanfo.so") libtool: link: mips64el-linux-gnuabi64-ar cr .libs/libanfo.a align.o anfo_common.o concurrent_stream.o ducttape.o index.o misc_streams.o output_streams.o sequence.o stream.o util.o anfo-elk.o fastlz.o config.pb.o output.pb.o libtool: link: mips64el-linux-gnuabi64-ranlib .libs/libanfo.a libtool: link: ( cd ".libs" && rm -f "libanfo.la" && ln -s "../libanfo.la" "libanfo.la" ) /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o fa2dna fa2dna.o libanfo.la -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lelk -lbz2 -lz -lpopt libtool: link: mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fa2dna fa2dna.o ./.libs/libanfo.so -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lelk -lbz2 -lz -lpopt -pthread mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o dnaindex.o dnaindex.cc /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o dnaindex dnaindex.o libanfo.la -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lelk -lbz2 -lz -lpopt libtool: link: mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/dnaindex dnaindex.o ./.libs/libanfo.so -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lelk -lbz2 -lz -lpopt -pthread mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo-tool.o anfo-tool.cc In file included from anfo-tool.cc:21: compress_stream.h:34:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:21: compress_stream.h:97:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:54: note: in C++11 destructors default to ‘noexcept’ In file included from anfo-tool.cc:21: compress_stream.h: At global scope: compress_stream.h:225:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:21: compress_stream.h:278:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:54: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ducttape.h:21, from anfo-tool.cc:22: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:22: ducttape.h:139:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 139 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:45:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 45 | auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:72:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:123:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 123 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:138:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 138 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:149:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 149 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:24: output_streams.h:176:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 176 | std::auto_ptr< std::ostream > out_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from anfo-tool.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from anfo-tool.cc:23: misc_streams.h: In instantiation of ‘void streams::SortingStream::put_result(const output::Result&) [with Comp = streams::by_seqid]’: misc_streams.h:282:16: required from here misc_streams.h:284:80: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from ducttape.h:20, from anfo-tool.cc:22: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ In file included from anfo-tool.cc:23: misc_streams.h:284:80: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from ducttape.h:20, from anfo-tool.cc:22: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ In file included from anfo-tool.cc:23: misc_streams.h: In instantiation of ‘void streams::SortingStream::put_result(const output::Result&) [with Comp = streams::by_genome_coordinate]’: misc_streams.h:282:16: required from here misc_streams.h:284:80: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from ducttape.h:20, from anfo-tool.cc:22: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ In file included from anfo-tool.cc:23: misc_streams.h:284:80: warning: ‘int google::protobuf::Message::SpaceUsed() const’ is deprecated: Please use SpaceUsedLong() instead [-Wdeprecated-declarations] 284 | total_scratch_size_ += scratch_space_.back()->SpaceUsed() ; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from output.pb.h:31, from sequence.h:32, from align_fwd.h:5, from ducttape.h:20, from anfo-tool.cc:22: /usr/include/google/protobuf/message.h:299:7: note: declared here 299 | int SpaceUsed() const { return internal::ToIntSize(SpaceUsedLong()); } | ^~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o anfo-tool anfo-tool.o libanfo.la -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lelk -lbz2 -lz -lpopt libtool: link: mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/anfo-tool anfo-tool.o ./.libs/libanfo.so -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lelk -lbz2 -lz -lpopt -pthread mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo.o anfo.cc In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h:34:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h:97:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:54: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h: At global scope: compress_stream.h:225:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h:278:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from align.h:22, from anfo_common.h:22, from anfo.cc:21: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:54: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from align.h:22, from anfo_common.h:22, from anfo.cc:21: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from align.h:20, from anfo_common.h:22, from anfo.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o anfo anfo.o libanfo.la -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lelk -lbz2 -lz -lpopt libtool: link: mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/anfo anfo.o ./.libs/libanfo.so -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lelk -lbz2 -lz -lpopt -pthread mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o index-test.o index-test.cc In file included from index-test.cc:27: compress_stream.h:34:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:27: compress_stream.h:97:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:27: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:54: note: in C++11 destructors default to ‘noexcept’ In file included from index-test.cc:27: compress_stream.h: At global scope: compress_stream.h:225:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:27: compress_stream.h:278:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:27: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:54: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from index-test.cc:30: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from compress_stream.h:22, from index-test.cc:27: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o index-test index-test.o libanfo.la -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lelk -lbz2 -lz -lpopt libtool: link: mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/index-test index-test.o ./.libs/libanfo.so -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lelk -lbz2 -lz -lpopt -pthread mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o file-info.o file-info.cc In file included from stream.h:20, from file-info.cc:25: compress_stream.h:34:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 34 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from file-info.cc:25: compress_stream.h:97:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 97 | InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from file-info.cc:25: compress_stream.h: In destructor ‘virtual DeflateStream::~DeflateStream()’: compress_stream.h:198:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 198 | else if( r != Z_OK ) throw zs_.msg ; | ^~~~~~~~~~~~~ compress_stream.h:198:54: note: in C++11 destructors default to ‘noexcept’ In file included from stream.h:20, from file-info.cc:25: compress_stream.h: At global scope: compress_stream.h:225:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from file-info.cc:25: compress_stream.h:278:36: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from stream.h:20, from file-info.cc:25: compress_stream.h: In destructor ‘virtual BzipStream::~BzipStream()’: compress_stream.h:379:54: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 379 | else if( r < BZ_OK ) throw BzipError( r ) ; | ^~~~~~~~~~~~~~~~~~~~ compress_stream.h:379:54: note: in C++11 destructors default to ‘noexcept’ compress_stream.h: In function ‘google::protobuf::io::FileOutputStream* make_output_stream(const char*)’: compress_stream.h:395:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | std::auto_ptr< google::protobuf::io::FileOutputStream > fos( | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h: At global scope: stream.h:319:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 319 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:323:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 323 | AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:345:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 345 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:385:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 385 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ; // final output | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:387:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 387 | std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:414:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:416:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 416 | std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ; // output to buffer | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:422:37: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 422 | ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:747:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 747 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:762:35: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 762 | FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:772:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 772 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:795:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 795 | SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:806:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 806 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:821:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 821 | SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:832:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 832 | std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:846:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 846 | BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from file-info.cc:25: stream.h:880:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 880 | std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/11/memory:76, from /usr/include/google/protobuf/stubs/common.h:41, from /usr/include/google/protobuf/io/zero_copy_stream.h:113, from sequence.h:30, from align_fwd.h:5, from file-info.cc:21: /usr/mips64el-linux-gnuabi64/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o file-info file-info.o libanfo.la -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lelk -lbz2 -lz -lpopt libtool: link: mips64el-linux-gnuabi64-g++ -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/file-info file-info.o ./.libs/libanfo.so -L/usr/lib/mips64el-linux-gnuabi64 -lprotobuf -lelk -lbz2 -lz -lpopt -pthread echo "; DO NOT EDIT THIS FILE! EDIT anfo.scm.in AND RUN MAKE INSTEAD!" > anfo.scm sed -e "s#__LIBDIR__#/usr/lib/mips64el-linux-gnuabi64#g" < ./anfo.scm.in >> anfo.scm make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' Making all in man make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/man' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/anfo.substvars debian/libanfo0.substvars debian/libanfo0-dev.substvars rm -fr -- debian/.debhelper/generated/anfo/ debian/anfo/ debian/tmp/ debian/.debhelper/generated/libanfo0/ debian/libanfo0/ debian/.debhelper/generated/libanfo0-dev/ debian/libanfo0-dev/ dh_auto_install -a install -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make install-am make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64' /bin/bash ../libtool --mode=install /usr/bin/install -c libanfo.la '/<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64' libtool: install: /usr/bin/install -c .libs/libanfo.so.0.0.0 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libanfo.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64 && { ln -s -f libanfo.so.0.0.0 libanfo.so.0 || { rm -f libanfo.so.0 && ln -s libanfo.so.0.0.0 libanfo.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64 && { ln -s -f libanfo.so.0.0.0 libanfo.so || { rm -f libanfo.so && ln -s libanfo.so.0.0.0 libanfo.so; }; }) libtool: install: /usr/bin/install -c .libs/libanfo.lai /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libanfo.la libtool: install: /usr/bin/install -c .libs/libanfo.a /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libanfo.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libanfo.a libtool: install: mips64el-linux-gnuabi64-ranlib /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libanfo.a libtool: warning: remember to run 'libtool --finish /usr/lib/mips64el-linux-gnuabi64' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c fa2dna dnaindex anfo-tool anfo '/<>/debian/tmp/usr/bin' libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/mips64el-linux-gnuabi64' libtool: install: /usr/bin/install -c .libs/fa2dna /<>/debian/tmp/usr/bin/fa2dna libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/mips64el-linux-gnuabi64' libtool: install: /usr/bin/install -c .libs/dnaindex /<>/debian/tmp/usr/bin/dnaindex libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/mips64el-linux-gnuabi64' libtool: install: /usr/bin/install -c .libs/anfo-tool /<>/debian/tmp/usr/bin/anfo-tool libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/mips64el-linux-gnuabi64' libtool: install: /usr/bin/install -c .libs/anfo /<>/debian/tmp/usr/bin/anfo /bin/mkdir -p '/<>/debian/tmp/usr/libexec' /bin/bash ../libtool --mode=install /usr/bin/install -c index-test file-info '/<>/debian/tmp/usr/libexec' libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/mips64el-linux-gnuabi64' libtool: install: /usr/bin/install -c .libs/index-test /<>/debian/tmp/usr/libexec/index-test libtool: warning: 'libanfo.la' has not been installed in '/usr/lib/mips64el-linux-gnuabi64' libtool: install: /usr/bin/install -c .libs/file-info /<>/debian/tmp/usr/libexec/file-info /bin/mkdir -p '/<>/debian/tmp/usr/share/anfo' /usr/bin/install -c -m 644 config.proto output.proto '/<>/debian/tmp/usr/share/anfo' /bin/mkdir -p '/<>/debian/tmp/usr/share/elk' /usr/bin/install -c srfi-88.scm srfi-89.scm '/<>/debian/tmp/usr/share/elk' /bin/mkdir -p '/<>/debian/tmp/usr/include/anfo' /usr/bin/install -c -m 644 align.h align_fwd.h anfo_common.h compress_stream.h concurrent_stream.h conffile.h ducttape.h index.h logdom.h misc_streams.h output_streams.h sequence.h stream.h trim.h util.h '/<>/debian/tmp/usr/include/anfo' /bin/mkdir -p '/<>/debian/tmp/usr/share/elk' /usr/bin/install -c anfo.scm '/<>/debian/tmp/usr/share/elk' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in man make[2]: Entering directory '/<>/man' make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 fa2dna.1 dnaindex.1 anfo-sge.1 anfo-tool.1 file-info.1 '/<>/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/<>/man' make[2]: Leaving directory '/<>/man' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/anfo' /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/anfo/example' /usr/bin/install -c -m 644 example/ancient.cfg example/default.cfg example/split-anfo.scm example/threebam.scm '/<>/debian/tmp/usr/share/doc/anfo/example' /usr/bin/install -c -m 644 README '/<>/debian/tmp/usr/share/doc/anfo/.' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' d-shlibmove --commit \ --multiarch \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/libanfo.so Library package automatic movement utility --> libbz2-dev package exists. --> libelk0-dev package exists. --> libprotobuf-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libanfo0-dev/usr/lib/mips64el-linux-gnuabi64 install -d -m 755 debian/libanfo0/usr/lib/mips64el-linux-gnuabi64 mv debian/tmp/usr/lib/mips64el-linux-gnuabi64/libanfo.a debian/libanfo0-dev/usr/lib/mips64el-linux-gnuabi64 mv debian/tmp/usr/lib/mips64el-linux-gnuabi64/libanfo.la debian/libanfo0-dev/usr/lib/mips64el-linux-gnuabi64 || true mv debian/tmp/usr/lib/mips64el-linux-gnuabi64/libanfo.so debian/libanfo0-dev/usr/lib/mips64el-linux-gnuabi64 mv /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libanfo.so.0 debian/libanfo0/usr/lib/mips64el-linux-gnuabi64 mv /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libanfo.so.0.0.0 debian/libanfo0/usr/lib/mips64el-linux-gnuabi64 PKGDEV=libanfo0-dev PKGSHL=libanfo0 install -d -m 755 debian/libanfo0-dev/usr/include mv debian/tmp/usr/include/anfo debian/libanfo0-dev/usr/include find debian -name "lib*.la" -delete dh_install install -d debian/anfo/usr cp --reflink=auto -a debian/tmp/usr/bin debian/tmp/usr/share debian/anfo/usr/ install -d debian/anfo/usr/lib/anfo cp --reflink=auto -a debian/tmp/usr/libexec/file-info debian/tmp/usr/libexec/index-test debian/anfo/usr/lib/anfo/ install -d debian/.debhelper/generated/anfo install -d debian/.debhelper/generated/libanfo0 install -d debian/.debhelper/generated/libanfo0-dev make[1]: Leaving directory '/<>' dh_installdocs -a install -p -m0644 debian/README.Debian debian/anfo/usr/share/doc/anfo/README.Debian install -p -m0644 debian/copyright debian/anfo/usr/share/doc/anfo/copyright install -d debian/libanfo0/usr/share/doc/libanfo0 install -p -m0644 debian/copyright debian/libanfo0/usr/share/doc/libanfo0/copyright install -d debian/libanfo0-dev/usr/share/doc/libanfo0-dev install -p -m0644 debian/copyright debian/libanfo0-dev/usr/share/doc/libanfo0-dev/copyright dh_installchangelogs -a install -p -m0644 debian/changelog debian/anfo/usr/share/doc/anfo/changelog.Debian install -p -m0644 debian/changelog debian/libanfo0/usr/share/doc/libanfo0/changelog.Debian install -p -m0644 debian/changelog debian/libanfo0-dev/usr/share/doc/libanfo0-dev/changelog.Debian rm -f debian/anfo.debhelper.log debian/libanfo0-dev.debhelper.log debian/libanfo0.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman install -p -m0644 ./debian/anfo.1 debian/anfo/usr/share/man/man1/anfo.1 man-recode --to-code UTF-8 --suffix .dh-new debian/anfo/usr/share/man/man1/anfo-sge.1 debian/anfo/usr/share/man/man1/anfo-tool.1 debian/anfo/usr/share/man/man1/anfo.1 debian/anfo/usr/share/man/man1/dnaindex.1 debian/anfo/usr/share/man/man1/fa2dna.1 debian/anfo/usr/share/man/man1/file-info.1 mv debian/anfo/usr/share/man/man1/anfo-sge.1.dh-new debian/anfo/usr/share/man/man1/anfo-sge.1 mv debian/anfo/usr/share/man/man1/anfo-tool.1.dh-new debian/anfo/usr/share/man/man1/anfo-tool.1 mv debian/anfo/usr/share/man/man1/anfo.1.dh-new debian/anfo/usr/share/man/man1/anfo.1 mv debian/anfo/usr/share/man/man1/dnaindex.1.dh-new debian/anfo/usr/share/man/man1/dnaindex.1 mv debian/anfo/usr/share/man/man1/fa2dna.1.dh-new debian/anfo/usr/share/man/man1/fa2dna.1 mv debian/anfo/usr/share/man/man1/file-info.1.dh-new debian/anfo/usr/share/man/man1/file-info.1 chmod 0644 -- debian/anfo/usr/share/man/man1/anfo-sge.1 debian/anfo/usr/share/man/man1/anfo-tool.1 debian/anfo/usr/share/man/man1/anfo.1 debian/anfo/usr/share/man/man1/dnaindex.1 debian/anfo/usr/share/man/man1/fa2dna.1 debian/anfo/usr/share/man/man1/file-info.1 # delete unused manpage find debian/anfo -name anfo-sge.1 -delete make[1]: Leaving directory '/<>' dh_perl -a dh_link -a rm -f debian/libanfo0/usr/lib/mips64el-linux-gnuabi64/libanfo.so.0 ln -s libanfo.so.0.0.0 debian/libanfo0/usr/lib/mips64el-linux-gnuabi64/libanfo.so.0 rm -f debian/libanfo0-dev/usr/lib/mips64el-linux-gnuabi64/libanfo.so ln -s libanfo.so.0.0.0 debian/libanfo0-dev/usr/lib/mips64el-linux-gnuabi64/libanfo.so dh_strip_nondeterminism -a dh_compress -a cd debian/anfo chmod a-x usr/share/doc/anfo/README usr/share/doc/anfo/changelog.Debian usr/share/man/man1/anfo-tool.1 usr/share/man/man1/anfo.1 usr/share/man/man1/dnaindex.1 usr/share/man/man1/fa2dna.1 usr/share/man/man1/file-info.1 gzip -9nf usr/share/doc/anfo/README usr/share/doc/anfo/changelog.Debian usr/share/man/man1/anfo-tool.1 usr/share/man/man1/anfo.1 usr/share/man/man1/dnaindex.1 usr/share/man/man1/fa2dna.1 usr/share/man/man1/file-info.1 cd '/<>' cd debian/libanfo0 chmod a-x usr/share/doc/libanfo0/changelog.Debian gzip -9nf usr/share/doc/libanfo0/changelog.Debian cd '/<>' cd debian/libanfo0-dev chmod a-x usr/share/doc/libanfo0-dev/changelog.Debian gzip -9nf usr/share/doc/libanfo0-dev/changelog.Debian cd '/<>' rm -f debian/anfo.debhelper.log debian/libanfo0-dev.debhelper.log debian/libanfo0.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/anfo ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/anfo/usr/share/doc -type f -a -true -a ! -regex 'debian/anfo/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/anfo/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/anfo/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/anfo -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/anfo/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/anfo/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libanfo0 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libanfo0/usr/share/doc -type f -a -true -a ! -regex 'debian/libanfo0/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libanfo0/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libanfo0 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libanfo0/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libanfo0-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libanfo0-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libanfo0-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libanfo0-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libanfo0-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libanfo0-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libanfo0-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/anfo -perm -5 -type f \( -name '*.scm' \) -print0 2>/dev/null | xargs -0r chmod 644 make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a install -d debian/anfo/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 dwz -mdebian/anfo/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/anfo.debug -M/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/anfo.debug -- debian/anfo/usr/bin/anfo debian/anfo/usr/bin/anfo-tool debian/anfo/usr/bin/dnaindex debian/anfo/usr/bin/fa2dna debian/anfo/usr/lib/anfo/file-info debian/anfo/usr/lib/anfo/index-test mips64el-linux-gnuabi64-objcopy --compress-debug-sections debian/anfo/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/anfo.debug dwz -- debian/libanfo0/usr/lib/mips64el-linux-gnuabi64/libanfo.so.0.0.0 dh_strip -a install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/94 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/anfo/usr/lib/anfo/index-test debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/94/781077b424384d97f4924d477dfb10327cea87.debug chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/94/781077b424384d97f4924d477dfb10327cea87.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/anfo/usr/lib/anfo/index-test mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/94/781077b424384d97f4924d477dfb10327cea87.debug debian/anfo/usr/lib/anfo/index-test install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/cd mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/anfo/usr/lib/anfo/file-info debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/cd/7cbfda47b028c7ed680f2bff1f44786034ec45.debug chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/cd/7cbfda47b028c7ed680f2bff1f44786034ec45.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/anfo/usr/lib/anfo/file-info mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/cd/7cbfda47b028c7ed680f2bff1f44786034ec45.debug debian/anfo/usr/lib/anfo/file-info install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/41 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/anfo/usr/bin/fa2dna debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/41/d438cda9cfc11cf915dd32a92dc424c1152340.debug chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/41/d438cda9cfc11cf915dd32a92dc424c1152340.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/anfo/usr/bin/fa2dna mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/41/d438cda9cfc11cf915dd32a92dc424c1152340.debug debian/anfo/usr/bin/fa2dna install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/e8 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/anfo/usr/bin/dnaindex debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/e8/c93b5945108cf70e7a765450bb0a704185974c.debug chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/e8/c93b5945108cf70e7a765450bb0a704185974c.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/anfo/usr/bin/dnaindex mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/e8/c93b5945108cf70e7a765450bb0a704185974c.debug debian/anfo/usr/bin/dnaindex install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/81 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/anfo/usr/bin/anfo-tool debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/81/f4acba34f97b550ecb967699cfaa2dc588b764.debug chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/81/f4acba34f97b550ecb967699cfaa2dc588b764.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/anfo/usr/bin/anfo-tool mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/81/f4acba34f97b550ecb967699cfaa2dc588b764.debug debian/anfo/usr/bin/anfo-tool install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/ca mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/anfo/usr/bin/anfo debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/ca/207958f9fa0f72b421eb898bcb8b7f7d7436f5.debug chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/ca/207958f9fa0f72b421eb898bcb8b7f7d7436f5.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/anfo/usr/bin/anfo mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.build-id/ca/207958f9fa0f72b421eb898bcb8b7f7d7436f5.debug debian/anfo/usr/bin/anfo install -d debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/anfo/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 debian/.debhelper/anfo/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/anfo/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/anfo/usr/lib/debug install -d debian/.debhelper/anfo/dbgsym-root/usr/share/doc ln -s anfo debian/.debhelper/anfo/dbgsym-root/usr/share/doc/anfo-dbgsym install -d debian/.debhelper/libanfo0/dbgsym-root/usr/lib/debug/.build-id/4d mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libanfo0/usr/lib/mips64el-linux-gnuabi64/libanfo.so.0.0.0 debian/.debhelper/libanfo0/dbgsym-root/usr/lib/debug/.build-id/4d/302e324974f635f89f11569027c76645d6f3fa.debug chmod 0644 -- debian/.debhelper/libanfo0/dbgsym-root/usr/lib/debug/.build-id/4d/302e324974f635f89f11569027c76645d6f3fa.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libanfo0/usr/lib/mips64el-linux-gnuabi64/libanfo.so.0.0.0 mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libanfo0/dbgsym-root/usr/lib/debug/.build-id/4d/302e324974f635f89f11569027c76645d6f3fa.debug debian/libanfo0/usr/lib/mips64el-linux-gnuabi64/libanfo.so.0.0.0 install -d debian/.debhelper/libanfo0/dbgsym-root/usr/share/doc ln -s libanfo0 debian/.debhelper/libanfo0/dbgsym-root/usr/share/doc/libanfo0-dbgsym mips64el-linux-gnuabi64-strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libanfo0-dev/usr/lib/mips64el-linux-gnuabi64/libanfo.a dh_makeshlibs -a rm -f debian/anfo/DEBIAN/shlibs rm -f debian/libanfo0/DEBIAN/shlibs install -d debian/libanfo0/DEBIAN echo "libanfo 0 libanfo0 (>= 0.98)" >> debian/libanfo0/DEBIAN/shlibs chmod 0644 -- debian/libanfo0/DEBIAN/shlibs mv debian/.debhelper/generated/libanfo0/triggers.new debian/.debhelper/generated/libanfo0/triggers rm -f debian/libanfo0-dev/DEBIAN/shlibs dh_shlibdeps -a install -d debian/anfo/DEBIAN dpkg-shlibdeps -Tdebian/anfo.substvars debian/anfo/usr/lib/anfo/index-test debian/anfo/usr/lib/anfo/file-info debian/anfo/usr/bin/fa2dna debian/anfo/usr/bin/dnaindex debian/anfo/usr/bin/anfo-tool debian/anfo/usr/bin/anfo dpkg-shlibdeps -Tdebian/libanfo0.substvars debian/libanfo0/usr/lib/mips64el-linux-gnuabi64/libanfo.so.0.0.0 dh_installdeb -a install -p -m0644 debian/.debhelper/generated/libanfo0/triggers debian/libanfo0/DEBIAN/triggers install -d debian/libanfo0-dev/DEBIAN dh_gencontrol -a echo misc:Depends= >> debian/anfo.substvars echo misc:Pre-Depends= >> debian/anfo.substvars install -d debian/.debhelper/anfo/dbgsym-root/DEBIAN dpkg-gencontrol -panfo -ldebian/changelog -Tdebian/anfo.substvars -Pdebian/.debhelper/anfo/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=anfo-dbgsym "-DDepends=anfo (= \${binary:Version})" "-DDescription=debug symbols for anfo" "-DBuild-Ids=41d438cda9cfc11cf915dd32a92dc424c1152340 81f4acba34f97b550ecb967699cfaa2dc588b764 94781077b424384d97f4924d477dfb10327cea87 ca207958f9fa0f72b421eb898bcb8b7f7d7436f5 cd7cbfda47b028c7ed680f2bff1f44786034ec45 e8c93b5945108cf70e7a765450bb0a704185974c" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/DEBIAN/control dpkg-gencontrol -panfo -ldebian/changelog -Tdebian/anfo.substvars -Pdebian/anfo chmod 0644 -- debian/anfo/DEBIAN/control echo misc:Depends= >> debian/libanfo0.substvars echo misc:Pre-Depends= >> debian/libanfo0.substvars install -d debian/.debhelper/libanfo0/dbgsym-root/DEBIAN dpkg-gencontrol -plibanfo0 -ldebian/changelog -Tdebian/libanfo0.substvars -Pdebian/.debhelper/libanfo0/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libanfo0-dbgsym "-DDepends=libanfo0 (= \${binary:Version})" "-DDescription=debug symbols for libanfo0" -DBuild-Ids=4d302e324974f635f89f11569027c76645d6f3fa -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libanfo0/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibanfo0 -ldebian/changelog -Tdebian/libanfo0.substvars -Pdebian/libanfo0 chmod 0644 -- debian/libanfo0/DEBIAN/control echo misc:Depends= >> debian/libanfo0-dev.substvars echo misc:Pre-Depends= >> debian/libanfo0-dev.substvars dpkg-gencontrol -plibanfo0-dev -ldebian/changelog -Tdebian/libanfo0-dev.substvars -Pdebian/libanfo0-dev chmod 0644 -- debian/libanfo0-dev/DEBIAN/control dh_md5sums -a cd debian/anfo >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/anfo/DEBIAN/md5sums cd debian/.debhelper/anfo/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/anfo/dbgsym-root/DEBIAN/md5sums cd debian/libanfo0 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libanfo0/DEBIAN/md5sums cd debian/.debhelper/libanfo0/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libanfo0/dbgsym-root/DEBIAN/md5sums cd debian/libanfo0-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libanfo0-dev/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/anfo .. dpkg-deb: building package 'anfo' in '../anfo_0.98-9_mips64el.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/anfo/dbgsym-root .. dpkg-deb: building package 'anfo-dbgsym' in '../anfo-dbgsym_0.98-9_mips64el.deb'. dpkg-deb --root-owner-group --build debian/libanfo0 .. dpkg-deb: building package 'libanfo0' in '../libanfo0_0.98-9_mips64el.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libanfo0/dbgsym-root .. dpkg-deb: building package 'libanfo0-dbgsym' in '../libanfo0-dbgsym_0.98-9_mips64el.deb'. dpkg-deb --root-owner-group --build debian/libanfo0-dev .. dpkg-deb: building package 'libanfo0-dev' in '../libanfo0-dev_0.98-9_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../anfo_0.98-9_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-20T23:25:35Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ anfo_0.98-9_mips64el.changes: ----------------------------- Format: 1.8 Date: Wed, 06 Oct 2021 14:24:46 +0200 Source: anfo Binary: anfo anfo-dbgsym libanfo0 libanfo0-dbgsym libanfo0-dev Built-For-Profiles: cross nocheck Architecture: mips64el Version: 0.98-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: anfo - Short Read Aligner/Mapper from MPG libanfo0 - Library for Short Read Aligner/Mapper from MPG libanfo0-dev - Development files for Short Read Aligner/Mapper from MPG Changes: anfo (0.98-9) unstable; urgency=medium . * uscan can't fetch latest upstream since https certificate became invalid thus silencing the uscan error by providing a fake watch file * Remove Tim Booth from Uploaders (thanks for all your previous work Tim) * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: 1a63620872cce56e3aab1d648743babf30bbd237 1085768 anfo-dbgsym_0.98-9_mips64el.deb 5ef2ad142faba1e489dc6e60ac12fbf12eb2d782 7201 anfo_0.98-9_mips64el.buildinfo 1fb0132ed72b2bd7d285018cbfdb504ed4a7b393 112476 anfo_0.98-9_mips64el.deb 680f84b96d6402e225209547c386cad9088e3134 3471108 libanfo0-dbgsym_0.98-9_mips64el.deb 8ef6deb12d82cfc7c558831a8ce0c3b01a571093 375344 libanfo0-dev_0.98-9_mips64el.deb 3397c2c713ef30495e9bc44cec0fa622b158d018 241032 libanfo0_0.98-9_mips64el.deb Checksums-Sha256: c299b4899e60e8c6d05fe398713764358f357d43e59dbb647b47a4265466ee72 1085768 anfo-dbgsym_0.98-9_mips64el.deb df634473a6fdd3255f0a30f523bff80763338c238148319ed8b5cb1cf4fbbe3c 7201 anfo_0.98-9_mips64el.buildinfo aec4d7f231755dde170ca16533c59cbc7a6d7352dc6d949f0fd274c7fd4677d1 112476 anfo_0.98-9_mips64el.deb 2aca6d958a9cc50d75b5034de5adbbb1bc6ac84f0e41e65a5c122b9dba3408f2 3471108 libanfo0-dbgsym_0.98-9_mips64el.deb e4a0252e910fc199908e5a410a61ef6ae5b2a7b68483aba1e28471d62b236b38 375344 libanfo0-dev_0.98-9_mips64el.deb 0718030b6e9c72f4f557f052382a844747b5551d24f157cb2cb190ba1a4f5879 241032 libanfo0_0.98-9_mips64el.deb Files: 13220a22da62b8c83d9899499f5495a5 1085768 debug optional anfo-dbgsym_0.98-9_mips64el.deb 7ee0f7471a382591fdc5972426928e2a 7201 science optional anfo_0.98-9_mips64el.buildinfo 9e47d91f66a76cbe5116368bdbccdc22 112476 science optional anfo_0.98-9_mips64el.deb 07791ecd81090e959d46bcf7621992dc 3471108 debug optional libanfo0-dbgsym_0.98-9_mips64el.deb 1cee1258ffe3473af514864d68100e19 375344 libdevel optional libanfo0-dev_0.98-9_mips64el.deb be9154e2e139daa4a3788e9e7a4e78de 241032 libs optional libanfo0_0.98-9_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: anfo Binary: anfo anfo-dbgsym libanfo0 libanfo0-dbgsym libanfo0-dev Architecture: mips64el Version: 0.98-9 Checksums-Md5: 13220a22da62b8c83d9899499f5495a5 1085768 anfo-dbgsym_0.98-9_mips64el.deb 9e47d91f66a76cbe5116368bdbccdc22 112476 anfo_0.98-9_mips64el.deb 07791ecd81090e959d46bcf7621992dc 3471108 libanfo0-dbgsym_0.98-9_mips64el.deb 1cee1258ffe3473af514864d68100e19 375344 libanfo0-dev_0.98-9_mips64el.deb be9154e2e139daa4a3788e9e7a4e78de 241032 libanfo0_0.98-9_mips64el.deb Checksums-Sha1: 1a63620872cce56e3aab1d648743babf30bbd237 1085768 anfo-dbgsym_0.98-9_mips64el.deb 1fb0132ed72b2bd7d285018cbfdb504ed4a7b393 112476 anfo_0.98-9_mips64el.deb 680f84b96d6402e225209547c386cad9088e3134 3471108 libanfo0-dbgsym_0.98-9_mips64el.deb 8ef6deb12d82cfc7c558831a8ce0c3b01a571093 375344 libanfo0-dev_0.98-9_mips64el.deb 3397c2c713ef30495e9bc44cec0fa622b158d018 241032 libanfo0_0.98-9_mips64el.deb Checksums-Sha256: c299b4899e60e8c6d05fe398713764358f357d43e59dbb647b47a4265466ee72 1085768 anfo-dbgsym_0.98-9_mips64el.deb aec4d7f231755dde170ca16533c59cbc7a6d7352dc6d949f0fd274c7fd4677d1 112476 anfo_0.98-9_mips64el.deb 2aca6d958a9cc50d75b5034de5adbbb1bc6ac84f0e41e65a5c122b9dba3408f2 3471108 libanfo0-dbgsym_0.98-9_mips64el.deb e4a0252e910fc199908e5a410a61ef6ae5b2a7b68483aba1e28471d62b236b38 375344 libanfo0-dev_0.98-9_mips64el.deb 0718030b6e9c72f4f557f052382a844747b5551d24f157cb2cb190ba1a4f5879 241032 libanfo0_0.98-9_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 20 Oct 2021 23:25:34 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 2.3.10), autoconf (= 2.71-2), automake (= 1:1.16.4-2), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-3+b2), binutils (= 2.37-7), binutils-common (= 2.37-7), binutils-x86-64-linux-gnu (= 2.37-7), bsdextrautils (= 2.37.2-4), bsdutils (= 1:2.37.2-4), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-9), d-shlibs (= 0.102), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.5.2), debian-archive-keyring (= 2021.1.1), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-9), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-9), gcc-11-base (= 11.2.0-9), gettext (= 0.21-4), gettext-base (= 0.21-4), gpgv (= 2.2.27-2), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapt-pkg6.0 (= 2.3.10), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-9), libatomic1 (= 11.2.0-9), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1), libbinutils (= 2.37-7), libblkid1 (= 2.37.2-4), libbsd0 (= 0.11.3-1), libbz2-1.0 (= 1.0.8-4), libbz2-dev (= 1.0.8-4), libc-bin (= 2.32-4), libc-dev-bin (= 2.32-4), libc6 (= 2.32-4), libc6-dev (= 2.32-4), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-9), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.25-2), libcrypt1 (= 1:4.4.25-2), libctf-nobfd0 (= 2.37-7), libctf0 (= 2.37-7), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.5.2), libdpkg-perl (= 1.20.9), libelf-dev (= 0.185-2), libelf1 (= 0.185-2), libelk0 (= 3.99.8-4.2+b1), libelk0-dev (= 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libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-4), libx11-6 (= 2:1.7.2-2+b1), libx11-data (= 2:1.7.2-2), libx11-dev (= 2:1.7.2-2+b1), libxau-dev (= 1:1.0.9-1), libxau6 (= 1:1.0.9-1), libxcb1 (= 1.14-3), libxcb1-dev (= 1.14-3), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.4-1), libxext6 (= 2:1.3.4-1), libxml2 (= 2.9.12+dfsg-5), libxmu-dev (= 2:1.1.2-2+b3), libxmu-headers (= 2:1.1.2-2), libxmu6 (= 2:1.1.2-2+b3), libxt-dev (= 1:1.2.0-1), libxt6 (= 1:1.2.0-1), libxxhash0 (= 0.8.0-2), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.14.12-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), passwd (= 1:4.8.1-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21+nmu1), protobuf-compiler (= 3.12.4-1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.00-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-4), x11-common (= 1:7.7+23), x11proto-dev (= 2021.5-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1633523086" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ anfo-dbgsym_0.98-9_mips64el.deb ------------------------------- new Debian package, version 2.0. size 1085768 bytes: control archive=852 bytes. 565 bytes, 12 lines control 724 bytes, 7 lines md5sums Package: anfo-dbgsym Source: anfo Version: 0.98-9 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1183 Depends: anfo (= 0.98-9) Section: debug Priority: optional Description: debug symbols for anfo Build-Ids: 41d438cda9cfc11cf915dd32a92dc424c1152340 81f4acba34f97b550ecb967699cfaa2dc588b764 94781077b424384d97f4924d477dfb10327cea87 ca207958f9fa0f72b421eb898bcb8b7f7d7436f5 cd7cbfda47b028c7ed680f2bff1f44786034ec45 e8c93b5945108cf70e7a765450bb0a704185974c drwxr-xr-x root/root 0 2021-10-06 12:24 ./ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/.build-id/41/ -rw-r--r-- root/root 84040 2021-10-06 12:24 ./usr/lib/debug/.build-id/41/d438cda9cfc11cf915dd32a92dc424c1152340.debug drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/.build-id/81/ -rw-r--r-- root/root 479496 2021-10-06 12:24 ./usr/lib/debug/.build-id/81/f4acba34f97b550ecb967699cfaa2dc588b764.debug drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/.build-id/94/ -rw-r--r-- root/root 123328 2021-10-06 12:24 ./usr/lib/debug/.build-id/94/781077b424384d97f4924d477dfb10327cea87.debug drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/.build-id/ca/ -rw-r--r-- root/root 194760 2021-10-06 12:24 ./usr/lib/debug/.build-id/ca/207958f9fa0f72b421eb898bcb8b7f7d7436f5.debug drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/.build-id/cd/ -rw-r--r-- root/root 91304 2021-10-06 12:24 ./usr/lib/debug/.build-id/cd/7cbfda47b028c7ed680f2bff1f44786034ec45.debug drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/.build-id/e8/ -rw-r--r-- root/root 115200 2021-10-06 12:24 ./usr/lib/debug/.build-id/e8/c93b5945108cf70e7a765450bb0a704185974c.debug drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 100712 2021-10-06 12:24 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/anfo.debug drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-06 12:24 ./usr/share/doc/anfo-dbgsym -> anfo anfo_0.98-9_mips64el.deb ------------------------ new Debian package, version 2.0. size 112476 bytes: control archive=1504 bytes. 881 bytes, 16 lines control 1508 bytes, 24 lines md5sums Package: anfo Version: 0.98-9 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 438 Depends: libanfo0 (>= 0.98), libc6 (>= 2.29), libelk0, libgcc-s1 (>= 3.0), libpopt0 (>= 1.14), libprotobuf23 (>= 3.12.4), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://bioinf.eva.mpg.de/anfo/ Description: Short Read Aligner/Mapper from MPG Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead). drwxr-xr-x root/root 0 2021-10-06 12:24 ./ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/bin/ -rwxr-xr-x root/root 50472 2021-10-06 12:24 ./usr/bin/anfo -rwxr-xr-x root/root 176448 2021-10-06 12:24 ./usr/bin/anfo-tool -rwxr-xr-x root/root 37104 2021-10-06 12:24 ./usr/bin/dnaindex -rwxr-xr-x root/root 33072 2021-10-06 12:24 ./usr/bin/fa2dna drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/anfo/ -rwxr-xr-x root/root 24352 2021-10-06 12:24 ./usr/lib/anfo/file-info -rwxr-xr-x root/root 32848 2021-10-06 12:24 ./usr/lib/anfo/index-test drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/anfo/ -rw-r--r-- root/root 6784 2021-10-06 12:24 ./usr/share/anfo/config.proto -rw-r--r-- root/root 14546 2021-10-06 12:24 ./usr/share/anfo/output.proto drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/doc/anfo/ -rw-r--r-- root/root 909 2021-10-06 12:24 ./usr/share/doc/anfo/README.Debian -rw-r--r-- root/root 2441 2021-10-06 12:24 ./usr/share/doc/anfo/README.gz -rw-r--r-- root/root 1336 2021-10-06 12:24 ./usr/share/doc/anfo/changelog.Debian.gz -rw-r--r-- root/root 2550 2021-10-06 12:24 ./usr/share/doc/anfo/copyright drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/doc/anfo/example/ -rw-r--r-- root/root 1807 2021-10-06 12:24 ./usr/share/doc/anfo/example/ancient.cfg -rw-r--r-- root/root 2056 2021-10-06 12:24 ./usr/share/doc/anfo/example/default.cfg -rw-r--r-- root/root 521 2021-10-06 12:24 ./usr/share/doc/anfo/example/split-anfo.scm -rw-r--r-- root/root 567 2021-10-06 12:24 ./usr/share/doc/anfo/example/threebam.scm drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/elk/ -rw-r--r-- root/root 9721 2021-10-06 12:24 ./usr/share/elk/anfo.scm -rw-r--r-- root/root 2593 2021-10-06 12:24 ./usr/share/elk/srfi-88.scm -rw-r--r-- root/root 12138 2021-10-06 12:24 ./usr/share/elk/srfi-89.scm drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/man/man1/ -rw-r--r-- root/root 4029 2021-10-06 12:24 ./usr/share/man/man1/anfo-tool.1.gz -rw-r--r-- root/root 1616 2021-10-06 12:24 ./usr/share/man/man1/anfo.1.gz -rw-r--r-- root/root 1684 2021-10-06 12:24 ./usr/share/man/man1/dnaindex.1.gz -rw-r--r-- root/root 1202 2021-10-06 12:24 ./usr/share/man/man1/fa2dna.1.gz -rw-r--r-- root/root 634 2021-10-06 12:24 ./usr/share/man/man1/file-info.1.gz libanfo0-dbgsym_0.98-9_mips64el.deb ----------------------------------- new Debian package, version 2.0. size 3471108 bytes: control archive=540 bytes. 372 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libanfo0-dbgsym Source: anfo Version: 0.98-9 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 3568 Depends: libanfo0 (= 0.98-9) Section: debug Priority: optional Description: debug symbols for libanfo0 Build-Ids: 4d302e324974f635f89f11569027c76645d6f3fa drwxr-xr-x root/root 0 2021-10-06 12:24 ./ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/debug/.build-id/4d/ -rw-r--r-- root/root 3642808 2021-10-06 12:24 ./usr/lib/debug/.build-id/4d/302e324974f635f89f11569027c76645d6f3fa.debug drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-06 12:24 ./usr/share/doc/libanfo0-dbgsym -> libanfo0 libanfo0-dev_0.98-9_mips64el.deb -------------------------------- new Debian package, version 2.0. size 375344 bytes: control archive=1408 bytes. 998 bytes, 22 lines control 1170 bytes, 18 lines md5sums Package: libanfo0-dev Source: anfo Version: 0.98-9 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 2694 Depends: libanfo0 (= 0.98-9), libbz2-dev, libelk0-dev, libprotobuf-dev, zlib1g-dev Conflicts: libanfo-dev Provides: libanfo-dev Section: libdevel Priority: optional Homepage: https://bioinf.eva.mpg.de/anfo/ Description: Development files for Short Read Aligner/Mapper from MPG Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead). . This package contains the development files that might be used in connection with the anfo binaries. drwxr-xr-x root/root 0 2021-10-06 12:24 ./ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/include/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/include/anfo/ -rw-r--r-- root/root 14361 2021-10-06 12:24 ./usr/include/anfo/align.h -rw-r--r-- root/root 2595 2021-10-06 12:24 ./usr/include/anfo/align_fwd.h -rw-r--r-- root/root 3399 2021-10-06 12:24 ./usr/include/anfo/anfo_common.h -rw-r--r-- root/root 11973 2021-10-06 12:24 ./usr/include/anfo/compress_stream.h -rw-r--r-- root/root 4906 2021-10-06 12:24 ./usr/include/anfo/concurrent_stream.h -rw-r--r-- root/root 2979 2021-10-06 12:24 ./usr/include/anfo/conffile.h -rw-r--r-- root/root 5051 2021-10-06 12:24 ./usr/include/anfo/ducttape.h -rw-r--r-- root/root 17630 2021-10-06 12:24 ./usr/include/anfo/index.h -rw-r--r-- root/root 5881 2021-10-06 12:24 ./usr/include/anfo/logdom.h -rw-r--r-- root/root 22028 2021-10-06 12:24 ./usr/include/anfo/misc_streams.h -rw-r--r-- root/root 5942 2021-10-06 12:24 ./usr/include/anfo/output_streams.h -rw-r--r-- root/root 14774 2021-10-06 12:24 ./usr/include/anfo/sequence.h -rw-r--r-- root/root 30889 2021-10-06 12:24 ./usr/include/anfo/stream.h -rw-r--r-- root/root 5292 2021-10-06 12:24 ./usr/include/anfo/trim.h -rw-r--r-- root/root 9473 2021-10-06 12:24 ./usr/include/anfo/util.h drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 2577408 2021-10-06 12:24 ./usr/lib/mips64el-linux-gnuabi64/libanfo.a lrwxrwxrwx root/root 0 2021-10-06 12:24 ./usr/lib/mips64el-linux-gnuabi64/libanfo.so -> libanfo.so.0.0.0 drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/doc/libanfo0-dev/ -rw-r--r-- root/root 1336 2021-10-06 12:24 ./usr/share/doc/libanfo0-dev/changelog.Debian.gz -rw-r--r-- root/root 2550 2021-10-06 12:24 ./usr/share/doc/libanfo0-dev/copyright libanfo0_0.98-9_mips64el.deb ---------------------------- new Debian package, version 2.0. size 241032 bytes: control archive=1100 bytes. 949 bytes, 19 lines control 227 bytes, 3 lines md5sums 29 bytes, 1 lines shlibs 67 bytes, 2 lines triggers Package: libanfo0 Source: anfo Version: 0.98-9 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1100 Depends: libbz2-1.0, libc6 (>= 2.29), libelk0, libgcc-s1 (>= 3.0), libprotobuf23 (>= 3.12.4), libstdc++6 (>= 11), zlib1g (>= 1:1.2.0) Section: libs Priority: optional Homepage: https://bioinf.eva.mpg.de/anfo/ Description: Library for Short Read Aligner/Mapper from MPG Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead). . This package contains the dynamic library for the anfo binaries. drwxr-xr-x root/root 0 2021-10-06 12:24 ./ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/lib/mips64el-linux-gnuabi64/ lrwxrwxrwx root/root 0 2021-10-06 12:24 ./usr/lib/mips64el-linux-gnuabi64/libanfo.so.0 -> libanfo.so.0.0.0 -rw-r--r-- root/root 1109672 2021-10-06 12:24 ./usr/lib/mips64el-linux-gnuabi64/libanfo.so.0.0.0 drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-06 12:24 ./usr/share/doc/libanfo0/ -rw-r--r-- root/root 1336 2021-10-06 12:24 ./usr/share/doc/libanfo0/changelog.Debian.gz -rw-r--r-- root/root 2550 2021-10-06 12:24 ./usr/share/doc/libanfo0/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [589 B] Get:5 copy:/<>/apt_archive ./ Packages [678 B] Fetched 2230 B in 0s (83.6 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 7599 kB of archives. After this operation, 21.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [856 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.5-1 [51.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-2 [547 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-2 [927 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40 [72.2 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] 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libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.008-1+b1 [12.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.634-1 [46.5 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b2 [27.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012004-1 [351 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1 [35.5 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-4 [88.2 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.109.0 [1338 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7599 kB in 0s (27.1 MB/s) Selecting previously unselected package diffstat. (Reading database ... 21826 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.27-2_amd64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../03-libsqlite3-0_3.36.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.36.0-2) ... Selecting previously unselected package gpg. Preparing to unpack .../04-gpg_2.2.27-2_amd64.deb ... Unpacking gpg (2.2.27-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../05-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. 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Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libsort-versions-perl (1.62-1) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.08-1) ... Setting up gpg (2.2.27-2) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtype-tiny-perl (1.012004-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-2) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.109.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.32-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 134992 Build-Time: 226 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 43 Job: anfo_0.98-9 Lintian: pass Machine Architecture: amd64 Package: anfo Package-Time: 284 Source-Version: 0.98-9 Space: 134992 Status: successful Version: 0.98-9 -------------------------------------------------------------------------------- Finished at 2021-10-20T23:25:35Z Build needed 00:04:44, 134992k disk space