sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +======================================================================================+ | art-nextgen-simulation-tools 20160605+dfsg-4 (amd64) Wed, 22 Dec 2021 22:00:49 +0000 | +======================================================================================+ Package: art-nextgen-simulation-tools Version: 20160605+dfsg-4 Source Version: 20160605+dfsg-4 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-2c279169-2066-4000-9d65-2a15444a5e96' with '<>' I: NOTICE: Log filtering will replace 'build/art-nextgen-simulation-tools-1D55x8/resolver-VBmNHv' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [165 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main amd64 Packages [8855 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9401 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8718 kB] Fetched 27.1 MB in 7s (3833 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'art-nextgen-simulation-tools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/art-nextgen-simulation-tools.git Please use: git clone https://salsa.debian.org/med-team/art-nextgen-simulation-tools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2241 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main art-nextgen-simulation-tools 20160605+dfsg-4 (dsc) [2400 B] Get:2 http://mirror.einval.org/debian sid/main art-nextgen-simulation-tools 20160605+dfsg-4 (tar) [2229 kB] Get:3 http://mirror.einval.org/debian sid/main art-nextgen-simulation-tools 20160605+dfsg-4 (diff) [9276 B] Fetched 2241 kB in 0s (29.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/art-nextgen-simulation-tools-1D55x8/art-nextgen-simulation-tools-20160605+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/art-nextgen-simulation-tools-1D55x8' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), libgsl-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 12), libgsl-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [408 B] Get:5 copy:/<>/apt_archive ./ Packages [496 B] Fetched 1861 B in 0s (44.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-11-cross-base gcc-11-x86-64-linux-gnu gcc-11-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:amd64 libasan6-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:amd64 libgcc-11-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgsl-dev:amd64 libgsl27:amd64 libgslcblas0:amd64 libgssapi-krb5-2:amd64 libicu67 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsigsegv2 libssl1.1:amd64 libstdc++-11-dev:amd64 libstdc++-11-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch g++-11-multilib-x86-64-linux-gnu gcc-11-doc gcc-11-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 gsl-ref-psdoc:amd64 | gsl-doc-pdf:amd64 | gsl-doc-info:amd64 | gsl-ref-html:amd64 krb5-doc:amd64 krb5-user:amd64 libstdc++-11-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl krb5-locales:amd64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-11-cross-base gcc-11-x86-64-linux-gnu gcc-11-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:amd64 libasan6-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:amd64 libgcc-11-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgsl-dev:amd64 libgsl27:amd64 libgslcblas0:amd64 libgssapi-krb5-2:amd64 libicu67 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsigsegv2 libssl1.1:amd64 libstdc++-11-dev:amd64 libstdc++-11-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:amd64 sensible-utils ucf 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. 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[26.8 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.6 [1054 kB] Get:75 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-13 [42.0 kB] Get:76 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.33-1 [2826 kB] Get:77 http://mirror.einval.org/debian sid/main amd64 libasan6 amd64 11.2.0-13 [2050 kB] Get:78 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 11.2.0-13 [9048 B] Get:79 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.15.5-2 [1457 kB] Get:80 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.27-1 [89.0 kB] Get:81 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.27-1 [104 kB] Get:82 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.4-1 [75.2 kB] Get:83 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.18.3-7 [65.4 kB] 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[1978 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 216 MB in 3s (63.6 MB/s) Selecting previously unselected package bsdextrautils. 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Setting up bsdextrautils (2.37.2-4) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.6) ... Setting up libmagic1:arm64 (1:5.41-2) ... Setting up linux-libc-dev:amd64 (5.15.5-2) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4) ... Setting up gcc-11-x86-64-linux-gnu-base:arm64 (11.2.0-9cross1) ... Setting up file (1:5.41-2) ... Setting up libyaml-perl (1.30-1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libc6-amd64-cross (2.33-1cross1) ... Setting up gcc-11-cross-base (11.2.0-9cross1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgcc-s1-amd64-cross (11.2.0-9cross1) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:arm64 (0.186-1) ... Setting up libxml2:arm64 (2.9.12+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libasan6-amd64-cross (11.2.0-9cross1) ... Setting up binutils-x86-64-linux-gnu (2.37-10) ... Setting up libstdc++6-amd64-cross (11.2.0-9cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up liblsan0-amd64-cross (11.2.0-9cross1) ... Setting up libc6-dev-amd64-cross (2.33-1cross1) ... Setting up libtsan0-amd64-cross (11.2.0-9cross1) ... Setting up cpp-11-x86-64-linux-gnu (11.2.0-9cross1) ... Setting up m4 (1.4.18-5) ... Setting up libgomp1-amd64-cross (11.2.0-9cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libitm1-amd64-cross (11.2.0-9cross1) ... Setting up libatomic1-amd64-cross (11.2.0-9cross1) ... Setting up libquadmath0-amd64-cross (11.2.0-9cross1) ... Setting up libubsan1-amd64-cross (11.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up cpp-x86-64-linux-gnu (4:11.2.0-2) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgcc-11-dev-amd64-cross (11.2.0-9cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-autoreconf (20) ... Setting up gcc-11-x86-64-linux-gnu (11.2.0-9cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-11-dev-amd64-cross (11.2.0-9cross1) ... Setting up g++-11-x86-64-linux-gnu (11.2.0-9cross1) ... Setting up gcc-x86-64-linux-gnu (4:11.2.0-2) ... Setting up debhelper (13.6) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-x86-64-linux-gnu (4:11.2.0-2) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-amd64 (12.9) ... Setting up libgcc-s1:amd64 (11.2.0-13) ... Setting up libc6:amd64 (2.33-1) ... Setting up libstdc++6:amd64 (11.2.0-13) ... Setting up liblsan0:amd64 (11.2.0-13) ... Setting up libitm1:amd64 (11.2.0-13) ... Setting up libtsan0:amd64 (11.2.0-13) ... Setting up libkeyutils1:amd64 (1.6.1-2) ... Setting up libgslcblas0:amd64 (2.7.1+dfsg-3) ... Setting up libssl1.1:amd64 (1.1.1l-1) ... Setting up libgsl27:amd64 (2.7.1+dfsg-3) ... Setting up libcrypt1:amd64 (1:4.4.27-1) ... Setting up libcom-err2:amd64 (1.46.4-1) ... Setting up libgomp1:amd64 (11.2.0-13) ... Setting up libasan6:amd64 (11.2.0-13) ... Setting up libkrb5support0:amd64 (1.18.3-7) ... Setting up libquadmath0:amd64 (11.2.0-13) ... Setting up libatomic1:amd64 (11.2.0-13) ... Setting up libk5crypto3:amd64 (1.18.3-7) ... Setting up libubsan1:amd64 (11.2.0-13) ... Setting up libgcc-11-dev:amd64 (11.2.0-13) ... Setting up libcrypt-dev:amd64 (1:4.4.27-1) ... Setting up libkrb5-3:amd64 (1.18.3-7) ... Setting up libgsl-dev:amd64 (2.7.1+dfsg-3) ... Setting up libgssapi-krb5-2:amd64 (1.18.3-7) ... Setting up libtirpc3:amd64 (1.3.2-2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.33-1) ... Setting up libstdc++-11-dev:amd64 (11.2.0-13) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.33-1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.37-10 dpkg-dev_1.21.1 g++-11_11.2.0-13 gcc-11_11.2.0-13 libc6-dev_2.33-1 libstdc++-11-dev_11.2.0-13 libstdc++-11-dev-amd64-cross_11.2.0-9cross1 libstdc++6_11.2.0-13 libstdc++6-amd64-cross_11.2.0-9cross1 linux-libc-dev_5.15.5-2 Package versions: adduser_3.118 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-5+b1 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SHA256 Format: 3.0 (quilt) Source: art-nextgen-simulation-tools Binary: art-nextgen-simulation-tools, art-nextgen-simulation-tools-profiles Architecture: any all Version: 20160605+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://www.niehs.nih.gov/research/resources/software/biostatistics/art/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/art-nextgen-simulation-tools Vcs-Git: https://salsa.debian.org/med-team/art-nextgen-simulation-tools.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), libgsl-dev Package-List: art-nextgen-simulation-tools deb science optional arch=any art-nextgen-simulation-tools-profiles deb science optional arch=all Checksums-Sha1: 73626f42dcb9acc1419b45d3749ff574050fd8d4 2229112 art-nextgen-simulation-tools_20160605+dfsg.orig.tar.xz 7a36460e40aff18286278ccc903d7f35ec598876 9276 art-nextgen-simulation-tools_20160605+dfsg-4.debian.tar.xz Checksums-Sha256: 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art-nextgen-simulation-tools_20160605+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-test-comparison.patch dpkg-source: info: applying adapt_path_to_perl_scripts.patch dpkg-source: info: applying spellings.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-2c279169-2066-4000-9d65-2a15444a5e96 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package art-nextgen-simulation-tools dpkg-buildpackage: info: source version 20160605+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:8: installing './compile' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' Makefile.am: installing './INSTALL' Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.amd64 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking for x86_64-linux-gnu-g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-linux-gnu-g++... none checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the compiler supports GNU C... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to enable C11 features... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of x86_64-linux-gnu-gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for main in -lm... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking whether make sets $(MAKE)... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for size_t... yes checking for floor... yes checking for pow... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-am make[2]: Entering directory '/<>' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_illumina_src/art_illumina.o art_illumina_src/art_illumina.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_illumina_src/art_qual_scale.o art_illumina_src/art_qual_scale.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_illumina_src/empdist.o art_illumina_src/empdist.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_illumina_src/readSeqFile.o art_illumina_src/readSeqFile.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_illumina_src/seqRead.o art_illumina_src/seqRead.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_illumina_src/samRead.o art_illumina_src/samRead.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o art_illumina art_illumina_src/art_illumina.o art_illumina_src/art_qual_scale.o art_illumina_src/empdist.o art_illumina_src/readSeqFile.o art_illumina_src/seqRead.o art_illumina_src/samRead.o -lgsl -lgslcblas -lm x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_454_src/art_454.o art_454_src/art_454.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_454_src/art.o art_454_src/art.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_454_src/read_profile.o art_454_src/read_profile.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_454_src/readSeqFile.o art_454_src/readSeqFile.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_454_src/seqRead.o art_454_src/seqRead.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_454_src/samRead.o art_454_src/samRead.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o art_454 art_454_src/art_454.o art_454_src/art.o art_454_src/read_profile.o art_454_src/readSeqFile.o art_454_src/seqRead.o art_454_src/samRead.o -lgsl -lgslcblas -lm x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_SOLiD_src/art_SOLiD.o art_SOLiD_src/art_SOLiD.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_SOLiD_src/art.o art_SOLiD_src/art.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_SOLiD_src/readSeqFile.o art_SOLiD_src/readSeqFile.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_SOLiD_src/read_SOLiD.o art_SOLiD_src/read_SOLiD.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o art_SOLiD_src/samRead.o art_SOLiD_src/samRead.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o art_SOLiD art_SOLiD_src/art_SOLiD.o art_SOLiD_src/art.o art_SOLiD_src/readSeqFile.o art_SOLiD_src/read_SOLiD.o art_SOLiD_src/samRead.o -lgsl -lgslcblas -lm make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' echo 'skip testing due to DEB_BUILD_OPTIONS="nocheck parallel=1"' skip testing due to DEB_BUILD_OPTIONS="nocheck parallel=1" make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/art-nextgen-simulation-tools-20160605\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' make[2]: Entering directory '/<>' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c art_illumina art_454 art_SOLiD '/<>/debian/tmp/usr/bin' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c aln2bed.pl map2bed.pl ART_profiler_454/art_profiler_454 ART_profiler_illumina/combinedAvg.pl ART_profiler_illumina/fastqReadAvg.pl ART_profiler_illumina/art_profiler_illumina ART_profiler_illumina/empDist.pl ART_profiler_illumina/summation.pl '/<>/debian/tmp/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install -a # aln2bed.pl seems to be of general use - the other perl scripts are called by art_profiler_illumina # see patch for the latter regarding PATH to *.pl files mkdir -p debian/art-nextgen-simulation-tools/usr/lib/art-nextgen-simulation-tools for pl in debian/art-nextgen-simulation-tools/usr/bin/*.pl ; do \ if [ `basename ${pl}` = aln2bed.pl ] ; then \ mv ${pl} debian/art-nextgen-simulation-tools/usr/bin/`basename ${pl} .pl` ; \ else \ mv ${pl} debian/art-nextgen-simulation-tools/usr/lib/art-nextgen-simulation-tools ; \ fi ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs ChangeLog make[1]: Leaving directory '/<>' debian/rules override_dh_installexamples-arch make[1]: Entering directory '/<>' dh_installexamples -a for ex in examples/run_test_examples_*.sh ; do \ sed -e 's?=\.\./?=/usr/bin/?' \ -e 's?^\.\./?/usr/bin/?' \ -e 's/aln2bed\.pl/aln2bed/' \ $ex > debian/art-nextgen-simulation-tools/usr/share/doc/art-nextgen-simulation-tools/examples/`basename $ex` ; \ done make[1]: Leaving directory '/<>' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package art-nextgen-simulation-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package art-nextgen-simulation-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'art-nextgen-simulation-tools' in '../art-nextgen-simulation-tools_20160605+dfsg-4_amd64.deb'. dpkg-deb: building package 'art-nextgen-simulation-tools-dbgsym' in '../art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4_amd64.deb'. dpkg-genbuildinfo --build=any -O../art-nextgen-simulation-tools_20160605+dfsg-4_amd64.buildinfo dpkg-genchanges --build=any -O../art-nextgen-simulation-tools_20160605+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-12-22T22:05:09Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ art-nextgen-simulation-tools_20160605+dfsg-4_amd64.changes: ----------------------------------------------------------- Format: 1.8 Date: Sun, 23 Feb 2020 10:51:01 +0530 Source: art-nextgen-simulation-tools Binary: art-nextgen-simulation-tools art-nextgen-simulation-tools-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 20160605+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: art-nextgen-simulation-tools - simulation tools to generate synthetic next-generation sequencing Changes: art-nextgen-simulation-tools (20160605+dfsg-4) unstable; urgency=medium . * Team Upload. . [ Jelmer Vernooij ] * Use secure copyright file specification URI. . [ Nilesh Patra ] * Update tests, fixes debci * Fix spell errors * Drop compat, switch to debhleper-compat * Add "Rules-Requires-Root: no" * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file * Update URLs Checksums-Sha1: 8ce3621cc24ff6f9b7b8a8c5edb53fe73a473c58 1676012 art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4_amd64.deb bd29f9aac10a424085b51a8e44f1288820e99a48 5217 art-nextgen-simulation-tools_20160605+dfsg-4_amd64.buildinfo 113760437c40d2b23e09efee261c087e86f2fdb7 1679096 art-nextgen-simulation-tools_20160605+dfsg-4_amd64.deb Checksums-Sha256: 654f8aecb5dfc993ca7b64adbda176472468e5611501a23dc46279079a66327a 1676012 art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4_amd64.deb 1c5e26c0671547a2dc2ccb543b5d062f538f34a2eff042d692de1bc609319dee 5217 art-nextgen-simulation-tools_20160605+dfsg-4_amd64.buildinfo 2fd74bb8c51254d6dae823d6a200bd46b77d90d77034dd631601ef0b47ab7125 1679096 art-nextgen-simulation-tools_20160605+dfsg-4_amd64.deb Files: 7243fac6b9611d6bc9f18ed1efa956d0 1676012 debug optional art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4_amd64.deb b2931991e1ddde0945c39296a9f5b60a 5217 science optional art-nextgen-simulation-tools_20160605+dfsg-4_amd64.buildinfo 8472e6b45453d0f0822fe27be240d3dc 1679096 science optional art-nextgen-simulation-tools_20160605+dfsg-4_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: art-nextgen-simulation-tools Binary: art-nextgen-simulation-tools art-nextgen-simulation-tools-dbgsym Architecture: amd64 Version: 20160605+dfsg-4 Checksums-Md5: 7243fac6b9611d6bc9f18ed1efa956d0 1676012 art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4_amd64.deb 8472e6b45453d0f0822fe27be240d3dc 1679096 art-nextgen-simulation-tools_20160605+dfsg-4_amd64.deb Checksums-Sha1: 8ce3621cc24ff6f9b7b8a8c5edb53fe73a473c58 1676012 art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4_amd64.deb 113760437c40d2b23e09efee261c087e86f2fdb7 1679096 art-nextgen-simulation-tools_20160605+dfsg-4_amd64.deb Checksums-Sha256: 654f8aecb5dfc993ca7b64adbda176472468e5611501a23dc46279079a66327a 1676012 art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4_amd64.deb 2fd74bb8c51254d6dae823d6a200bd46b77d90d77034dd631601ef0b47ab7125 1679096 art-nextgen-simulation-tools_20160605+dfsg-4_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Wed, 22 Dec 2021 22:05:08 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-5+b1), binutils (= 2.37-10), binutils-aarch64-linux-gnu (= 2.37-10), binutils-common (= 2.37-10), bsdextrautils (= 2.37.2-4), bsdutils (= 1:2.37.2-4), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-13), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.6), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.1), dpkg-dev (= 1.21.1), dwz (= 0.14-1), file (= 1:5.41-2), findutils (= 4.8.0-1), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-13), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-13), gcc-11-base (= 11.2.0-13), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-13), libatomic1 (= 11.2.0-13), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1+b1), libbinutils (= 2.37-10), libblkid1 (= 2.37.2-4), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-1), libc-dev-bin (= 2.33-1), libc6 (= 2.33-1), libc6-dev (= 2.33-1), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-13), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.37-10), libctf0 (= 2.37-10), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.261), libdebhelper-perl (= 13.6), libdpkg-perl (= 1.21.1), libelf1 (= 0.186-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.2.0-13), libgcc-s1 (= 11.2.0-13), libgcrypt20 (= 1.9.4-5), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgmp10 (= 2:6.2.1+dfsg-3), libgomp1 (= 11.2.0-13), libgpg-error0 (= 1.43-1), libgsl-dev (= 2.7.1+dfsg-3), libgsl27 (= 2.7.1+dfsg-3), libgslcblas0 (= 2.7.1+dfsg-3), libgssapi-krb5-2 (= 1.18.3-7), libicu67 (= 67.1-7), libisl23 (= 0.24-2), libitm1 (= 11.2.0-13), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblsan0 (= 11.2.0-13), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmount1 (= 2.37.2-4), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-11), libpam-modules-bin (= 1.4.0-11), libpam-runtime (= 1.4.0-11), libpam0g (= 1.4.0-11), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.4-1), libquadmath0 (= 11.2.0-13), libseccomp2 (= 2.5.3-2), libselinux1 (= 3.3-1+b1), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-4), libssl1.1 (= 1.1.1l-1), libstdc++-11-dev (= 11.2.0-13), libstdc++6 (= 11.2.0-13), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.7-1), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-13), libubsan1 (= 11.2.0-13), libuchardet0 (= 0.0.7-1), libudev1 (= 249.7-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-4), libxml2 (= 2.9.12+dfsg-5+b1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.5-2), login (= 1:4.8.1-2), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-4), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1582435261" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4_amd64.deb ------------------------------------------------------------- new Debian package, version 2.0. size 1676012 bytes: control archive=720 bytes. 553 bytes, 12 lines control 423 bytes, 4 lines md5sums Package: art-nextgen-simulation-tools-dbgsym Source: art-nextgen-simulation-tools Version: 20160605+dfsg-4 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1730 Depends: art-nextgen-simulation-tools (= 20160605+dfsg-4) Section: debug Priority: optional Description: debug symbols for art-nextgen-simulation-tools Build-Ids: 09193f355f6d8ec817257d44c3f4ab56a24d1102 5f0170f5776b4e09bbc548f9c7e769c8d9415f72 ad08c20befb9b1ebaaedbfe7784cd31504b20a65 drwxr-xr-x root/root 0 2020-02-23 05:21 ./ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/lib/debug/.build-id/09/ -rw-r--r-- root/root 501000 2020-02-23 05:21 ./usr/lib/debug/.build-id/09/193f355f6d8ec817257d44c3f4ab56a24d1102.debug drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/lib/debug/.build-id/5f/ -rw-r--r-- root/root 489432 2020-02-23 05:21 ./usr/lib/debug/.build-id/5f/0170f5776b4e09bbc548f9c7e769c8d9415f72.debug drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/lib/debug/.build-id/ad/ -rw-r--r-- root/root 627656 2020-02-23 05:21 ./usr/lib/debug/.build-id/ad/08c20befb9b1ebaaedbfe7784cd31504b20a65.debug drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 137480 2020-02-23 05:21 ./usr/lib/debug/.dwz/x86_64-linux-gnu/art-nextgen-simulation-tools.debug drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/share/ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-02-23 05:21 ./usr/share/doc/art-nextgen-simulation-tools-dbgsym -> art-nextgen-simulation-tools art-nextgen-simulation-tools_20160605+dfsg-4_amd64.deb ------------------------------------------------------ new Debian package, version 2.0. size 1679096 bytes: control archive=2100 bytes. 1723 bytes, 29 lines control 2813 bytes, 34 lines md5sums Package: art-nextgen-simulation-tools Version: 20160605+dfsg-4 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 9092 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgsl27 (>= 2.7.1), libstdc++6 (>= 9) Suggests: art-nextgen-simulation-tools-profiles Section: science Priority: optional Homepage: https://www.niehs.nih.gov/research/resources/software/biostatistics/art/ Description: simulation tools to generate synthetic next-generation sequencing reads ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLiD. ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. VarSim) for evaluating variant calling tools or methods. drwxr-xr-x root/root 0 2020-02-23 05:21 ./ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/bin/ -rwxr-xr-x root/root 1462 2020-02-23 05:21 ./usr/bin/aln2bed -rwxr-xr-x root/root 1354144 2020-02-23 05:21 ./usr/bin/art_454 -rwxr-xr-x root/root 162208 2020-02-23 05:21 ./usr/bin/art_SOLiD -rwxr-xr-x root/root 4188576 2020-02-23 05:21 ./usr/bin/art_illumina -rwxr-xr-x root/root 6184 2020-02-23 05:21 ./usr/bin/art_profiler_454 -rwxr-xr-x root/root 6015 2020-02-23 05:21 ./usr/bin/art_profiler_illumina drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/lib/art-nextgen-simulation-tools/ -rwxr-xr-x root/root 2419 2020-02-23 05:21 ./usr/lib/art-nextgen-simulation-tools/combinedAvg.pl -rwxr-xr-x root/root 5175 2020-02-23 05:21 ./usr/lib/art-nextgen-simulation-tools/empDist.pl -rwxr-xr-x root/root 6470 2020-02-23 05:21 ./usr/lib/art-nextgen-simulation-tools/fastqReadAvg.pl -rwxr-xr-x root/root 1359 2020-02-23 05:21 ./usr/lib/art-nextgen-simulation-tools/map2bed.pl -rwxr-xr-x root/root 3625 2020-02-23 05:21 ./usr/lib/art-nextgen-simulation-tools/summation.pl drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/share/ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/share/doc/art-nextgen-simulation-tools/ -rw-r--r-- root/root 34 2016-06-06 02:33 ./usr/share/doc/art-nextgen-simulation-tools/AUTHORS -rw-r--r-- root/root 96 2016-06-06 02:33 ./usr/share/doc/art-nextgen-simulation-tools/NEWS.gz -rw-r--r-- root/root 1080 2016-06-06 02:33 ./usr/share/doc/art-nextgen-simulation-tools/README -rw-r--r-- root/root 356 2020-02-23 05:21 ./usr/share/doc/art-nextgen-simulation-tools/README.Debian -rw-r--r-- root/root 377 2020-02-23 05:21 ./usr/share/doc/art-nextgen-simulation-tools/README.test -rw-r--r-- root/root 3819 2016-06-06 02:33 ./usr/share/doc/art-nextgen-simulation-tools/art_454_README.gz -rw-r--r-- root/root 3431 2016-06-06 02:33 ./usr/share/doc/art-nextgen-simulation-tools/art_SOLiD_README.gz -rw-r--r-- root/root 5458 2016-06-06 02:33 ./usr/share/doc/art-nextgen-simulation-tools/art_illumina_README.gz -rw-r--r-- root/root 586 2020-02-23 05:21 ./usr/share/doc/art-nextgen-simulation-tools/changelog.Debian.gz -rw-r--r-- root/root 98 2016-06-06 02:33 ./usr/share/doc/art-nextgen-simulation-tools/changelog.gz -rw-r--r-- root/root 1951 2020-02-23 05:21 ./usr/share/doc/art-nextgen-simulation-tools/copyright drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/share/doc/art-nextgen-simulation-tools/examples/ -rw-r--r-- root/root 3497445 2016-04-17 16:54 ./usr/share/doc/art-nextgen-simulation-tools/examples/amplicon_reference.fa -rw-r--r-- root/root 1790 2020-02-23 05:21 ./usr/share/doc/art-nextgen-simulation-tools/examples/run_test_examples_454.sh -rw-r--r-- root/root 1749 2020-02-23 05:21 ./usr/share/doc/art-nextgen-simulation-tools/examples/run_test_examples_SOLiD.sh -rw-r--r-- root/root 3289 2020-02-23 05:21 ./usr/share/doc/art-nextgen-simulation-tools/examples/run_test_examples_illumina.sh -rw-r--r-- root/root 10482 2016-04-17 16:54 ./usr/share/doc/art-nextgen-simulation-tools/examples/testSeq.fa -rw-r--r-- root/root 409 2020-02-23 05:21 ./usr/share/doc/art-nextgen-simulation-tools/run-unit-test drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/share/man/ drwxr-xr-x root/root 0 2020-02-23 05:21 ./usr/share/man/man1/ -rw-r--r-- root/root 312 2020-02-23 05:21 ./usr/share/man/man1/aln2bed.1.gz -rw-r--r-- root/root 1451 2020-02-23 05:21 ./usr/share/man/man1/art_454.1.gz -rw-r--r-- root/root 1459 2020-02-23 05:21 ./usr/share/man/man1/art_SOLiD.1.gz -rw-r--r-- root/root 2319 2020-02-23 05:21 ./usr/share/man/man1/art_illumina.1.gz -rw-r--r-- root/root 500 2020-02-23 05:21 ./usr/share/man/man1/art_profiler_454.1.gz -rw-r--r-- root/root 673 2020-02-23 05:21 ./usr/share/man/man1/art_profiler_illumina.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [537 B] Get:5 copy:/<>/apt_archive ./ Packages [626 B] Fetched 2126 B in 0s (50.0 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg liblist-someutils-xs-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. 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all 1.21-1 [13.7 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b3 [75.1 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b2 [19.8 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.10-1 [91.0 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1 [34.2 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.22-4 [84.6 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:103 http://mirror.einval.org/debian sid/main arm64 lintian all 2.114.0 [1382 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7631 kB in 0s (37.3 MB/s) Selecting previously unselected package readline-common. (Reading database ... 18885 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.1-2_all.deb ... Unpacking readline-common (8.1-2) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../001-libreadline8_8.1-2_arm64.deb ... Unpacking libreadline8:arm64 (8.1-2) ... Selecting previously unselected package diffstat. Preparing to unpack .../002-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../003-libassuan0_2.5.5-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../004-gpgconf_2.2.27-3_arm64.deb ... Unpacking gpgconf (2.2.27-3) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../005-libsqlite3-0_3.36.0-2_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.36.0-2) ... Selecting previously unselected package gpg. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 74920 Build-Time: 169 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 61 Job: art-nextgen-simulation-tools_20160605+dfsg-4 Lintian: pass Machine Architecture: arm64 Package: art-nextgen-simulation-tools Package-Time: 260 Source-Version: 20160605+dfsg-4 Space: 74920 Status: successful Version: 20160605+dfsg-4 -------------------------------------------------------------------------------- Finished at 2021-12-22T22:05:09Z Build needed 00:04:20, 74920k disk space