sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | bali-phy 3.4.1+dfsg-1 (armhf) Mon, 04 Feb 2019 02:24:23 +0000 | +==============================================================================+ Package: bali-phy Version: 3.4.1+dfsg-1 Source Version: 3.4.1+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-9623a59f-a1f1-460e-9aea-810fd7a596ba' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [243 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-03-0812.15.pdiff [2254 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-03-1415.37.pdiff [20.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-03-2011.56.pdiff [19.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-03-2011.56.pdiff [19.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-03-0812.15.pdiff [1167 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-03-1415.37.pdiff [10.2 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-03-2011.56.pdiff [18.3 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-03-2011.56.pdiff [18.3 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8089 kB] Fetched 8460 kB in 2s (4711 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'bali-phy' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bali-phy.git Please use: git clone https://salsa.debian.org/med-team/bali-phy.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1306 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main bali-phy 3.4.1+dfsg-1 (dsc) [2199 B] Get:2 http://debian.oregonstate.edu/debian unstable/main bali-phy 3.4.1+dfsg-1 (tar) [1301 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main bali-phy 3.4.1+dfsg-1 (diff) [3028 B] Fetched 1306 kB in 0s (7789 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/bali-phy-QbRwdy/bali-phy-3.4.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bali-phy-QbRwdy' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Vo2YVJ/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-Vo2YVJ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Sources [363 B] Get:5 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Packages [451 B] Fetched 1771 B in 0s (103 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-armhf-cross libgcc1-dbg-armhf-cross libgomp1-dbg-armhf-cross libitm1-dbg-armhf-cross libatomic1-dbg-armhf-cross libasan5-dbg-armhf-cross liblsan0-dbg-armhf-cross libtsan0-dbg-armhf-cross libubsan1-dbg-armhf-cross libmpx2-dbg-armhf-cross libquadmath0-dbg-armhf-cross manpages-dev autoconf automake libtool flex bison gdb-arm-linux-gnueabihf gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross sbuild-build-depends-core-dummy:armhf sensible-utils ucf 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 41.7 MB of archives. After this operation, 152 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Vo2YVJ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-2 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-2 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-2 [66.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.31.1-11 [2831 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf-base amd64 8.2.0-11cross1 [188 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabihf amd64 8.2.0-11cross1 [6550 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:8.2.0-2 [16.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.2.0-11cross1 [183 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.28-4cross1 [1170 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:8.2.0-11cross1 [37.1 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 8.2.0-11cross1 [63.2 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 8.2.0-11cross1 [6568 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 8.2.0-11cross1 [301 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 8.2.0-11cross1 [330 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 8.2.0-11cross1 [104 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armhf-cross all 8.2.0-11cross1 [613 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf amd64 8.2.0-11cross1 [6960 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:8.2.0-2 [1456 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 4.19.13-1cross1 [1196 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.28-4cross1 [2148 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armhf-cross all 8.2.0-11cross1 [1547 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabihf amd64 8.2.0-11cross1 [7125 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:8.2.0-2 [1180 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0132+dfsg-2+b1 [344 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.5 [6544 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.7 MB in 1s (69.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11800 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-2) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-2_amd64.deb ... Unpacking file (1:5.35-2) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Unpacking crossbuild-essential-armhf (12.5) ... Selecting previously unselected package sbuild-build-depends-core-dummy:armhf. Preparing to unpack .../43-sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy:armhf (0.invalid.0) ... Setting up gcc-8-cross-base (8.2.0-11cross1) ... Setting up libc6-armhf-cross (2.28-4cross1) ... Setting up libgcc1-armhf-cross (1:8.2.0-11cross1) ... Setting up libstdc++6-armhf-cross (8.2.0-11cross1) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libfile-which-perl (1.23-1) ... Setting up libubsan1-armhf-cross (8.2.0-11cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up binutils-arm-linux-gnueabihf (2.31.1-11) ... Setting up libyaml-perl (1.27-1) ... Setting up libgomp1-armhf-cross (8.2.0-11cross1) ... Setting up linux-libc-dev-armhf-cross (4.19.13-1cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up libatomic1-armhf-cross (8.2.0-11cross1) ... Setting up libmagic-mgc (1:5.35-2) ... Setting up libmagic1:amd64 (1:5.35-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up sensible-utils (0.0.12) ... Setting up cross-config (2.6.15-2) ... Setting up libio-string-perl (1.08-3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up gcc-8-arm-linux-gnueabihf-base:amd64 (8.2.0-11cross1) ... Setting up libasan5-armhf-cross (8.2.0-11cross1) ... Setting up libgcc-8-dev-armhf-cross (8.2.0-11cross1) ... Setting up libc6-dev-armhf-cross (2.28-4cross1) ... Setting up file (1:5.35-2) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++-8-dev-armhf-cross (8.2.0-11cross1) ... Setting up cpp-8-arm-linux-gnueabihf (8.2.0-11cross1) ... Setting up cpp-arm-linux-gnueabihf (4:8.2.0-2) ... Setting up gcc-8-arm-linux-gnueabihf (8.2.0-11cross1) ... Setting up gcc-arm-linux-gnueabihf (4:8.2.0-2) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-8-arm-linux-gnueabihf (8.2.0-11cross1) ... Setting up libxml-libxml-perl (2.0132+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-arm-linux-gnueabihf (4:8.2.0-2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-armhf (12.5) ... Setting up sbuild-build-depends-core-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-5) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-Vo2YVJ/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-Vo2YVJ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Sources [485 B] Get:5 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Packages [571 B] Fetched 2019 B in 0s (124 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:armhf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Vo2YVJ/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:armhf. (Reading database ... 14847 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev dpkg-deb: building package 'sbuild-build-depends-bali-phy-dummy' in '/<>/resolver-Vo2YVJ/apt_archive/sbuild-build-depends-bali-phy-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-bali-phy-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-Vo2YVJ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Sources [715 B] Get:5 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Packages [794 B] Fetched 2472 B in 0s (145 kB/s) Reading package lists... Reading package lists... Install bali-phy build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz fontconfig-config fonts-dejavu-core gcc-8-base:armhf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libatomic1:armhf libblkid-dev:armhf libblkid1:armhf libboost-chrono-dev:armhf libboost-chrono1.67-dev:armhf libboost-chrono1.67.0:armhf libboost-dev:armhf libboost-filesystem-dev:armhf libboost-filesystem1.67-dev:armhf libboost-filesystem1.67.0:armhf libboost-program-options-dev:armhf libboost-program-options1.67-dev:armhf libboost-program-options1.67.0:armhf libboost-random-dev:armhf libboost-random1.67-dev:armhf libboost-random1.67.0:armhf libboost-system-dev:armhf libboost-system1.67-dev:armhf libboost-system1.67.0:armhf libboost1.67-dev:armhf libbsd0 libbsd0:armhf libc6:armhf libc6-dev:armhf libcairo-gobject2:armhf libcairo-script-interpreter2:armhf libcairo2:armhf libcairo2-dev:armhf libcroco3 libeigen3-dev libelf1 libexpat1 libexpat1:armhf libexpat1-dev:armhf libffi-dev:armhf libffi6:armhf libfile-stripnondeterminism-perl libfontconfig1:armhf libfontconfig1-dev:armhf libfreetype6:armhf libfreetype6-dev:armhf libgcc-8-dev:armhf libgcc1:armhf libglib2.0-0 libglib2.0-0:armhf libglib2.0-bin libglib2.0-data libglib2.0-dev:armhf libglib2.0-dev-bin libgomp1:armhf libice-dev:armhf libice6:armhf liblua5.1-0 liblzo2-2:armhf libmount-dev:armhf libmount1:armhf libmpdec2 libncurses6 libpcre16-3:armhf libpcre3:armhf libpcre3-dev:armhf libpcre32-3:armhf libpcrecpp0v5:armhf libpipeline1 libpixman-1-0:armhf libpixman-1-dev:armhf libpng-dev:armhf libpng16-16:armhf libpthread-stubs0-dev:armhf libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline7 libselinux1:armhf libselinux1-dev:armhf libsepol1:armhf libsepol1-dev:armhf libsigsegv2 libsm-dev:armhf libsm6:armhf libsqlite3-0 libssl1.1 libstdc++-8-dev:armhf libstdc++6:armhf libtool libubsan1:armhf libuchardet0 libuuid1:armhf libx11-6:armhf libx11-data libx11-dev:armhf libxau-dev:armhf libxau6:armhf libxcb-render0:armhf libxcb-render0-dev:armhf libxcb-shm0:armhf libxcb-shm0-dev:armhf libxcb1:armhf libxcb1-dev:armhf libxdmcp-dev:armhf libxdmcp6:armhf libxext-dev:armhf libxext6:armhf libxrender-dev:armhf libxrender1:armhf libyaml-0-2 linux-libc-dev:armhf lsb-base m4 man-db meson mime-support ninja-build nlohmann-json-dev pandoc pandoc-data pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.7 python3.7-minimal readline-common uuid-dev:armhf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:armhf libboost1.67-doc:armhf libboost-atomic1.67-dev:armhf libboost-container1.67-dev:armhf libboost-context1.67-dev:armhf libboost-coroutine1.67-dev:armhf libboost-date-time1.67-dev:armhf libboost-exception1.67-dev:armhf libboost-fiber1.67-dev:armhf libboost-graph1.67-dev:armhf libboost-graph-parallel1.67-dev:armhf libboost-iostreams1.67-dev:armhf libboost-locale1.67-dev:armhf libboost-log1.67-dev:armhf libboost-math1.67-dev:armhf libboost-mpi1.67-dev:armhf libboost-mpi-python1.67-dev:armhf libboost-numpy1.67-dev:armhf libboost-python1.67-dev:armhf libboost-regex1.67-dev:armhf libboost-serialization1.67-dev:armhf libboost-signals1.67-dev:armhf libboost-stacktrace1.67-dev:armhf libboost-test1.67-dev:armhf libboost-thread1.67-dev:armhf libboost-timer1.67-dev:armhf libboost-type-erasure1.67-dev:armhf libboost-wave1.67-dev:armhf libboost1.67-tools-dev:armhf libmpfrc++-dev:armhf libntl-dev:armhf glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf libcairo2-doc:armhf libeigen3-doc libmpfrc++-dev libglib2.0-doc:armhf libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libice-doc:armhf libsm-doc:armhf libstdc++-8-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc:armhf libxcb-doc:armhf libxext-doc:armhf m4-doc apparmor less www-browser texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc nodejs php python ruby r-base-core libjs-mathjax node-katex libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.7-venv python3.7-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl freetype2-doc:armhf shared-mime-info xdg-user-dirs shared-mime-info:armhf xdg-user-dirs:armhf libgpm2 libpng-tools:armhf libltdl-dev uuid-runtime:armhf libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz fontconfig-config fonts-dejavu-core gcc-8-base:armhf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libatomic1:armhf libblkid-dev:armhf libblkid1:armhf libboost-chrono-dev:armhf libboost-chrono1.67-dev:armhf libboost-chrono1.67.0:armhf libboost-dev:armhf libboost-filesystem-dev:armhf libboost-filesystem1.67-dev:armhf libboost-filesystem1.67.0:armhf libboost-program-options-dev:armhf libboost-program-options1.67-dev:armhf libboost-program-options1.67.0:armhf libboost-random-dev:armhf libboost-random1.67-dev:armhf libboost-random1.67.0:armhf libboost-system-dev:armhf libboost-system1.67-dev:armhf libboost-system1.67.0:armhf libboost1.67-dev:armhf libbsd0 libbsd0:armhf libc6:armhf libc6-dev:armhf libcairo-gobject2:armhf libcairo-script-interpreter2:armhf libcairo2:armhf libcairo2-dev:armhf libcroco3 libeigen3-dev libelf1 libexpat1 libexpat1:armhf libexpat1-dev:armhf libffi-dev:armhf libffi6:armhf libfile-stripnondeterminism-perl libfontconfig1:armhf libfontconfig1-dev:armhf libfreetype6:armhf libfreetype6-dev:armhf libgcc-8-dev:armhf libgcc1:armhf libglib2.0-0 libglib2.0-0:armhf libglib2.0-bin libglib2.0-data libglib2.0-dev:armhf libglib2.0-dev-bin libgomp1:armhf libice-dev:armhf libice6:armhf liblua5.1-0 liblzo2-2:armhf libmount-dev:armhf libmount1:armhf libmpdec2 libncurses6 libpcre16-3:armhf libpcre3:armhf libpcre3-dev:armhf libpcre32-3:armhf libpcrecpp0v5:armhf libpipeline1 libpixman-1-0:armhf libpixman-1-dev:armhf libpng-dev:armhf libpng16-16:armhf libpthread-stubs0-dev:armhf libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline7 libselinux1:armhf libselinux1-dev:armhf libsepol1:armhf libsepol1-dev:armhf libsigsegv2 libsm-dev:armhf libsm6:armhf libsqlite3-0 libssl1.1 libstdc++-8-dev:armhf libstdc++6:armhf libtool libubsan1:armhf libuchardet0 libuuid1:armhf libx11-6:armhf libx11-data libx11-dev:armhf libxau-dev:armhf libxau6:armhf libxcb-render0:armhf libxcb-render0-dev:armhf libxcb-shm0:armhf libxcb-shm0-dev:armhf libxcb1:armhf libxcb1-dev:armhf libxdmcp-dev:armhf libxdmcp6:armhf libxext-dev:armhf libxext6:armhf libxrender-dev:armhf libxrender1:armhf libyaml-0-2 linux-libc-dev:armhf lsb-base m4 man-db meson mime-support ninja-build nlohmann-json-dev pandoc pandoc-data pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.7 python3.7-minimal readline-common sbuild-build-depends-bali-phy-dummy:armhf uuid-dev:armhf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 154 newly installed, 0 to remove and 0 not upgraded. Need to get 72.0 MB of archives. After this operation, 454 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Vo2YVJ/apt_archive ./ sbuild-build-depends-bali-phy-dummy 0.invalid.0 [956 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-1 [99.3 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-2 [917 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-1 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-1 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1a-1 [1527 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.7-minimal amd64 3.7.2-2 [588 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.6-1 [105 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 python3.7-minimal amd64 3.7.2-2 [1734 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.7.2-1 [36.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 mime-support all 3.61 [37.1 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.26.0+fossilbc891ac6b-2 [635 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.7-stdlib amd64 3.7.2-2 [1731 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 python3.7 amd64 3.7.2-2 [323 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.7.2-1 [20.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.7.2-1 [61.5 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-9 [547 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.0-1 [19.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.0-1 [12.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.175-2 [160 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.2-4 [1257 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-1 [102 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12 [1002 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main armhf gcc-8-base armhf 8.2.0-16 [189 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main armhf libgcc1 armhf 1:8.2.0-16 [37.1 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.28-5 [2388 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 8.2.0-16 [338 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 8.2.0-16 [337 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 8.2.0-16 [6736 B] Get:51 http://debian.oregonstate.edu/debian unstable/main armhf libuuid1 armhf 2.33.1-0.1 [77.5 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main armhf libblkid1 armhf 2.33.1-0.1 [179 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 4.19.16-1 [1113 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.28-5 [2149 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main armhf uuid-dev armhf 2.33.1-0.1 [92.6 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main armhf libblkid-dev armhf 2.33.1-0.1 [217 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 8.2.0-16 [64.7 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 8.2.0-16 [104 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-8-dev armhf 8.2.0-16 [614 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-8-dev armhf 8.2.0-16 [1579 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main armhf libboost1.67-dev armhf 1.67.0-12 [8386 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main armhf libboost-system1.67.0 armhf 1.67.0-12 [228 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main armhf libboost-chrono1.67.0 armhf 1.67.0-12 [231 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main armhf libboost-chrono1.67-dev armhf 1.67.0-12 [233 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main armhf libboost-chrono-dev armhf 1.67.0.1 [4268 B] Get:66 http://debian.oregonstate.edu/debian unstable/main armhf libboost-dev armhf 1.67.0.1 [3860 B] Get:67 http://debian.oregonstate.edu/debian unstable/main armhf libboost-filesystem1.67.0 armhf 1.67.0-12 [255 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main armhf libboost-system1.67-dev armhf 1.67.0-12 [232 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main armhf libboost-filesystem1.67-dev armhf 1.67.0-12 [262 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main armhf libboost-filesystem-dev armhf 1.67.0.1 [3684 B] Get:71 http://debian.oregonstate.edu/debian unstable/main armhf libboost-program-options1.67.0 armhf 1.67.0-12 [334 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main armhf libboost-program-options1.67-dev armhf 1.67.0-12 [384 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main armhf libboost-program-options-dev armhf 1.67.0.1 [3656 B] Get:74 http://debian.oregonstate.edu/debian unstable/main armhf libboost-random1.67.0 armhf 1.67.0-12 [230 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main armhf libboost-random1.67-dev armhf 1.67.0-12 [230 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main armhf libboost-random-dev armhf 1.67.0.1 [3648 B] Get:77 http://debian.oregonstate.edu/debian unstable/main armhf libboost-system-dev armhf 1.67.0.1 [3788 B] Get:78 http://debian.oregonstate.edu/debian unstable/main armhf libbsd0 armhf 0.9.1-1 [107 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main armhf libexpat1 armhf 2.2.6-1 [77.6 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g armhf 1:1.2.11.dfsg-1 [87.9 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main armhf libpng16-16 armhf 1.6.36-3 [274 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armhf libfreetype6 armhf 2.9.1-3 [322 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main armhf libfontconfig1 armhf 2.13.1-2 [328 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armhf libpixman-1-0 armhf 0.36.0-1 [465 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armhf libxcb1 armhf 1.13.1-2 [132 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.7-1 [298 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armhf libx11-6 armhf 2:1.6.7-1 [698 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-shm0 armhf 1.13.1-2 [99.0 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armhf libxext6 armhf 2:1.3.3-1+b2 [48.1 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armhf libcairo2 armhf 1.16.0-2 [617 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armhf libffi6 armhf 3.2.1-9 [18.9 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armhf libpcre3 armhf 2:8.39-11 [317 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armhf libselinux1 armhf 2.8-1+b1 [77.4 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armhf libmount1 armhf 2.33.1-0.1 [191 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armhf libglib2.0-0 armhf 2.58.2-4 [1100 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armhf libcairo-gobject2 armhf 1.16.0-2 [123 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armhf liblzo2-2 armhf 2.10-0.1 [49.7 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armhf libcairo-script-interpreter2 armhf 1.16.0-2 [151 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armhf libexpat1-dev armhf 2.2.6-1 [125 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armhf libpng-dev armhf 1.6.36-3 [286 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armhf libfreetype6-dev armhf 2.9.1-3 [491 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armhf libfontconfig1-dev armhf 2.13.1-2 [950 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2018.4-4 [3128 B] Get:112 http://debian.oregonstate.edu/debian unstable/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.5 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armhf libpthread-stubs0-dev armhf 0.3-4 [3862 B] Get:116 http://debian.oregonstate.edu/debian unstable/main armhf libxcb1-dev armhf 1.13.1-2 [171 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armhf libx11-dev armhf 2:1.6.7-1 [771 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main armhf libxrender-dev armhf 1:0.9.10-1 [37.8 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B] Get:120 http://debian.oregonstate.edu/debian unstable/main armhf libxext-dev armhf 2:1.3.3-1+b2 [103 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 lsb-base all 10.2018112800 [28.3 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main armhf libice6 armhf 2:1.0.9-2 [51.7 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main armhf libsm6 armhf 2:1.2.2-1+b3 [31.3 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main armhf libice-dev armhf 2:1.0.9-2 [61.9 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main armhf libsm-dev armhf 2:1.2.2-1+b3 [34.3 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main armhf libpixman-1-dev armhf 0.36.0-1 [486 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-render0-dev armhf 1.13.1-2 [112 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-shm0-dev armhf 1.13.1-2 [100 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main armhf libffi-dev armhf 3.2.1-9 [154 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-data all 2.58.2-4 [1109 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-bin amd64 2.58.2-4 [124 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main amd64 python3-lib2to3 all 3.7.2-3 [76.7 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main amd64 python3-distutils all 3.7.2-3 [142 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-dev-bin amd64 2.58.2-4 [157 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main armhf libmount-dev armhf 2.33.1-0.1 [223 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main armhf libpcre16-3 armhf 2:8.39-11 [238 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main armhf libpcre32-3 armhf 2:8.39-11 [231 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main armhf libpcrecpp0v5 armhf 2:8.39-11 [150 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main armhf libpcre3-dev armhf 2:8.39-11 [585 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main armhf libsepol1 armhf 2.8-1 [230 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main armhf libsepol1-dev armhf 2.8-1 [318 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main armhf libselinux1-dev armhf 2.8-1+b1 [162 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main armhf libglib2.0-dev armhf 2.58.2-4 [1384 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main armhf libcairo2-dev armhf 1.16.0-2 [663 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main amd64 libeigen3-dev all 3.3.7-1 [850 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main amd64 liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main amd64 ninja-build amd64 1.8.2-1 [93.6 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main amd64 python3-pkg-resources all 40.7.1-1 [152 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main amd64 meson all 0.49.0-2 [280 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main amd64 nlohmann-json-dev all 2.1.1-1.1 [395 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main amd64 pandoc-data all 2.2.1-3 [329 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main amd64 pandoc amd64 2.2.1-3+b2 [14.7 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 72.0 MB in 1s (72.8 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14847 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../2-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../3-groff-base_1.22.4-2_amd64.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../4-libpipeline1_1.5.1-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../5-man-db_2.8.5-1_amd64.deb ... Unpacking man-db (2.8.5-1) ... Selecting previously unselected package libssl1.1:amd64. 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Unpacking python3-minimal (3.7.2-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.61_all.deb ... Unpacking mime-support (3.61) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../2-libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../4-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../5-libsqlite3-0_3.26.0+fossilbc891ac6b-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-2) ... Selecting previously unselected package libpython3.7-stdlib:amd64. Preparing to unpack .../6-libpython3.7-stdlib_3.7.2-2_amd64.deb ... 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Setting up libarchive-zip-perl (1.64-1) ... Setting up mime-support (3.61) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libpthread-stubs0-dev:armhf (0.3-4) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libelf1:amd64 (0.175-2) ... Setting up libglib2.0-0:amd64 (2.58.2-4) ... No schema files found: doing nothing. Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up pandoc-data (2.2.1-3) ... Setting up linux-libc-dev:armhf (4.19.16-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libpipeline1:amd64 (1.5.1-1) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up x11proto-dev (2018.4-4) ... Setting up lsb-base (10.2018112800) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libglib2.0-data (2.58.2-4) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up gcc-8-base:armhf (8.2.0-16) ... Setting up libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-2) ... Setting up nlohmann-json-dev (2.1.1-1.1) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libglib2.0-bin (2.58.2-4) ... Setting up ninja-build (1.8.2-1) ... Setting up libncurses6:amd64 (6.1+20181013-1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libfile-stripnondeterminism-perl (1.1.0-1) ... Setting up libtool (2.4.6-9) ... Setting up libpython3.7-stdlib:amd64 (3.7.2-2) ... Setting up fontconfig-config (2.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up pandoc (2.2.1-3+b2) ... Setting up gettext (0.19.8.1-9) ... Setting up libeigen3-dev (3.3.7-1) ... Setting up groff-base (1.22.4-2) ... Setting up python3.7 (3.7.2-2) ... Setting up autoconf (2.69-11) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.7.2-1) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.2-1) ... Setting up python3-pkg-resources (40.7.1-1) ... Setting up meson (0.49.0-2) ... Setting up python3-lib2to3 (3.7.2-3) ... Setting up python3-distutils (3.7.2-3) ... Setting up libglib2.0-dev-bin (2.58.2-4) ... Setting up libc6:armhf (2.28-5) ... Setting up libpcre3:armhf (2:8.39-11) ... Setting up libbsd0:armhf (0.9.1-1) ... Setting up libpixman-1-0:armhf (0.36.0-1) ... Setting up libpixman-1-dev:armhf (0.36.0-1) ... Setting up libselinux1:armhf (2.8-1+b1) ... Setting up libice6:armhf (2:1.0.9-2) ... Setting up libpcre32-3:armhf (2:8.39-11) ... Setting up libpcre16-3:armhf (2:8.39-11) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libc6-dev:armhf (2.28-5) ... Setting up libsepol1:armhf (2.8-1) ... Setting up libxau6:armhf (1:1.0.8-1+b2) ... Setting up libgcc1:armhf (1:8.2.0-16) ... Setting up liblzo2-2:armhf (2.10-0.1) ... Setting up libsepol1-dev:armhf (2.8-1) ... Setting up libgomp1:armhf (8.2.0-16) ... Setting up libatomic1:armhf (8.2.0-16) ... Setting up libexpat1:armhf (2.2.6-1) ... Setting up dh-autoreconf (19) ... Setting up libuuid1:armhf (2.33.1-0.1) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-1) ... Setting up uuid-dev:armhf (2.33.1-0.1) ... Setting up libxau-dev:armhf (1:1.0.8-1+b2) ... Setting up libblkid1:armhf (2.33.1-0.1) ... Setting up dh-strip-nondeterminism (1.1.0-1) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up libice-dev:armhf (2:1.0.9-2) ... Setting up libexpat1-dev:armhf (2.2.6-1) ... Setting up libstdc++6:armhf (8.2.0-16) ... Setting up libffi6:armhf (3.2.1-9) ... Setting up libmount1:armhf (2.33.1-0.1) ... Setting up libboost-system1.67.0:armhf (1.67.0-12) ... Setting up libasan5:armhf (8.2.0-16) ... Setting up libxcb1:armhf (1.13.1-2) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Setting up libubsan1:armhf (8.2.0-16) ... Setting up debhelper (12) ... Setting up libsm6:armhf (2:1.2.2-1+b3) ... Setting up libsm-dev:armhf (2:1.2.2-1+b3) ... Setting up libxcb-render0:armhf (1.13.1-2) ... Setting up libpng16-16:armhf (1.6.36-3) ... Setting up libboost-filesystem1.67.0:armhf (1.67.0-12) ... Setting up libglib2.0-0:armhf (2.58.2-4) ... /var/lib/dpkg/info/libglib2.0-0:armhf.postinst: 47: /var/lib/dpkg/info/libglib2.0-0:armhf.postinst: /usr/lib/arm-linux-gnueabihf/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:armhf.postinst: 50: /var/lib/dpkg/info/libglib2.0-0:armhf.postinst: /usr/lib/arm-linux-gnueabihf/glib-2.0/gio-querymodules: Exec format error Setting up libblkid-dev:armhf (2.33.1-0.1) ... Setting up libx11-6:armhf (2:1.6.7-1) ... Setting up libffi-dev:armhf (3.2.1-9) ... Setting up libboost-program-options1.67.0:armhf (1.67.0-12) ... Setting up libfreetype6:armhf (2.9.1-3) ... Setting up libboost-chrono1.67.0:armhf (1.67.0-12) ... Setting up libxcb-shm0:armhf (1.13.1-2) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libxcb1-dev:armhf (1.13.1-2) ... Setting up libpcrecpp0v5:armhf (2:8.39-11) ... Setting up libgcc-8-dev:armhf (8.2.0-16) ... Setting up libx11-dev:armhf (2:1.6.7-1) ... Setting up libpng-dev:armhf (1.6.36-3) ... Setting up libboost-random1.67.0:armhf (1.67.0-12) ... Setting up libmount-dev:armhf (2.33.1-0.1) ... Setting up libfontconfig1:armhf (2.13.1-2) ... Setting up libstdc++-8-dev:armhf (8.2.0-16) ... Setting up libpcre3-dev:armhf (2:8.39-11) ... Setting up libxext6:armhf (2:1.3.3-1+b2) ... Setting up libxcb-shm0-dev:armhf (1.13.1-2) ... Setting up libxrender-dev:armhf (1:0.9.10-1) ... Setting up libxcb-render0-dev:armhf (1.13.1-2) ... Setting up libfreetype6-dev:armhf (2.9.1-3) ... Setting up libboost1.67-dev:armhf (1.67.0-12) ... Setting up libxext-dev:armhf (2:1.3.3-1+b2) ... Setting up libboost-system1.67-dev:armhf (1.67.0-12) ... Setting up libboost-chrono1.67-dev:armhf (1.67.0-12) ... Setting up libboost-dev:armhf (1.67.0.1) ... Setting up libselinux1-dev:armhf (2.8-1+b1) ... Setting up libfontconfig1-dev:armhf (2.13.1-2) ... Setting up libcairo2:armhf (1.16.0-2) ... Setting up libboost-filesystem1.67-dev:armhf (1.67.0-12) ... Setting up libcairo-script-interpreter2:armhf (1.16.0-2) ... Setting up libboost-chrono-dev:armhf (1.67.0.1) ... Setting up libboost-system-dev:armhf (1.67.0.1) ... Setting up libcairo-gobject2:armhf (1.16.0-2) ... Setting up libboost-random1.67-dev:armhf (1.67.0-12) ... Setting up libboost-filesystem-dev:armhf (1.67.0.1) ... Setting up libglib2.0-dev:armhf (2.58.2-4) ... Setting up libboost-program-options1.67-dev:armhf (1.67.0-12) ... Setting up libboost-random-dev:armhf (1.67.0.1) ... Setting up libboost-program-options-dev:armhf (1.67.0.1) ... Setting up libcairo2-dev:armhf (1.16.0-2) ... Setting up sbuild-build-depends-bali-phy-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-5) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-11 dpkg-dev_1.19.4 g++-8_8.2.0-16 gcc-8_8.2.0-16 libc6-dev_2.28-5 libstdc++-8-dev_8.2.0-16 libstdc++-8-dev-armhf-cross_8.2.0-11cross1 libstdc++6_8.2.0-16 libstdc++6-armhf-cross_8.2.0-11cross1 linux-libc-dev_4.19.16-1 Package versions: adduser_3.118 apt_1.8.0~beta1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_5.0-2 binutils_2.31.1-11 binutils-arm-linux-gnueabihf_2.31.1-11 binutils-common_2.31.1-11 binutils-x86-64-linux-gnu_2.31.1-11 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 coreutils_8.30-1 cpp_4:8.2.0-2 cpp-8_8.2.0-16 cpp-8-arm-linux-gnueabihf_8.2.0-11cross1 cpp-arm-linux-gnueabihf_4:8.2.0-2 cross-config_2.6.15-2 crossbuild-essential-armhf_12.5 dash_0.5.10.2-5 debconf_1.5.70 debhelper_12 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.0-1 diffutils_1:3.6-1 dpkg_1.19.4 dpkg-cross_2.6.15-2 dpkg-dev_1.19.4 dwz_0.12-3 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-2 findutils_4.6.0+git+20190105-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2 g++-8_8.2.0-16 g++-8-arm-linux-gnueabihf_8.2.0-11cross1 g++-arm-linux-gnueabihf_4:8.2.0-2 gcc_4:8.2.0-2 gcc-8_8.2.0-16 gcc-8-arm-linux-gnueabihf_8.2.0-11cross1 gcc-8-arm-linux-gnueabihf-base_8.2.0-11cross1 gcc-8-base_8.2.0-16 gcc-8-cross-base_8.2.0-11cross1 gcc-arm-linux-gnueabihf_4:8.2.0-2 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.12-1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.8.0~beta1 libarchive-zip-perl_1.64-1 libasan5_8.2.0-16 libasan5-armhf-cross_8.2.0-11cross1 libatomic1_8.2.0-16 libatomic1-armhf-cross_8.2.0-11cross1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-11 libblkid-dev_2.33.1-0.1 libblkid1_2.33.1-0.1 libboost-chrono-dev_1.67.0.1 libboost-chrono1.67-dev_1.67.0-12 libboost-chrono1.67.0_1.67.0-12 libboost-dev_1.67.0.1 libboost-filesystem-dev_1.67.0.1 libboost-filesystem1.67-dev_1.67.0-12 libboost-filesystem1.67.0_1.67.0-12 libboost-program-options-dev_1.67.0.1 libboost-program-options1.67-dev_1.67.0-12 libboost-program-options1.67.0_1.67.0-12 libboost-random-dev_1.67.0.1 libboost-random1.67-dev_1.67.0-12 libboost-random1.67.0_1.67.0-12 libboost-system-dev_1.67.0.1 libboost-system1.67-dev_1.67.0-12 libboost-system1.67.0_1.67.0-12 libboost1.67-dev_1.67.0-12 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-5 libc-dev-bin_2.28-5 libc6_2.28-5 libc6-armhf-cross_2.28-4cross1 libc6-dev_2.28-5 libc6-dev-armhf-cross_2.28-4cross1 libcairo-gobject2_1.16.0-2 libcairo-script-interpreter2_1.16.0-2 libcairo2_1.16.0-2 libcairo2-dev_1.16.0-2 libcap-ng0_0.7.9-2 libcc1-0_8.2.0-16 libcom-err2_1.44.5-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.3 libdebconfclient0_0.246 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.4 libeigen3-dev_3.3.7-1 libelf1_0.175-2 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi-dev_3.2.1-9 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-2 libfontconfig1-dev_2.13.1-2 libfreetype6_2.9.1-3 libfreetype6-dev_2.9.1-3 libgcc-8-dev_8.2.0-16 libgcc-8-dev-armhf-cross_8.2.0-11cross1 libgcc1_1:8.2.0-16 libgcc1-armhf-cross_1:8.2.0-11cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libglib2.0-0_2.58.2-4 libglib2.0-bin_2.58.2-4 libglib2.0-data_2.58.2-4 libglib2.0-dev_2.58.2-4 libglib2.0-dev-bin_2.58.2-4 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-2 libgomp1_8.2.0-16 libgomp1-armhf-cross_8.2.0-11cross1 libgpg-error0_1.33-3 libhogweed4_3.4.1-1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.2.0-16 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.2.0-16 liblua5.1-0_5.1.5-8.1+b2 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 liblzo2-2_2.10-0.1 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount-dev_2.33.1-0.1 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libmpx2_8.2.0-16 libncurses6_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-4 libpam-modules-bin_1.1.8-4 libpam-runtime_1.1.8-4 libpam0g_1.1.8-4 libpcre16-3_2:8.39-11 libpcre3_2:8.39-11 libpcre3-dev_2:8.39-11 libpcre32-3_2:8.39-11 libpcrecpp0v5_2:8.39-11 libperl5.28_5.28.1-4 libpipeline1_1.5.1-1 libpixman-1-0_0.36.0-1 libpixman-1-dev_0.36.0-1 libpng-dev_1.6.36-3 libpng16-16_1.6.36-3 libpthread-stubs0-dev_0.3-4 libpython3-stdlib_3.7.2-1 libpython3.7-minimal_3.7.2-2 libpython3.7-stdlib_3.7.2-2 libquadmath0_8.2.0-16 libreadline7_7.0-5 libseccomp2_2.3.3-3 libselinux1_2.8-1+b1 libselinux1-dev_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsepol1-dev_2.8-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.2-1+b3 libsm6_2:1.2.2-1+b3 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.26.0+fossilbc891ac6b-2 libss2_1.44.5-1 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-16 libstdc++-8-dev-armhf-cross_8.2.0-11cross1 libstdc++6_8.2.0-16 libstdc++6-armhf-cross_8.2.0-11cross1 libsystemd0_240-5 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-1 libtool_2.4.6-9 libtsan0_8.2.0-16 libubsan1_8.2.0-16 libubsan1-armhf-cross_8.2.0-11cross1 libuchardet0_0.0.6-3 libudev1_240-5 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libx11-dev_2:1.6.7-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-2 libxcb-render0-dev_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb-shm0-dev_1.13.1-2 libxcb1_1.13.1-2 libxcb1-dev_1.13.1-2 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml-libxml-perl_2.0132+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libyaml-0-2_0.2.1-1 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.16-1 linux-libc-dev-armhf-cross_4.19.13-1cross1 login_1:4.5-1.1 lsb-base_10.2018112800 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17+b3 meson_0.49.0-2 mime-support_3.61 mount_2.33.1-0.1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 ninja-build_1.8.2-1 nlohmann-json-dev_2.1.1-1.1 pandoc_2.2.1-3+b2 pandoc-data_2.2.1-3 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 pkg-config_0.29-6 po-debconf_1.0.21 python3_3.7.2-1 python3-distutils_3.7.2-3 python3-lib2to3_3.7.2-3 python3-minimal_3.7.2-1 python3-pkg-resources_40.7.1-1 python3.7_3.7.2-2 python3.7-minimal_3.7.2-2 readline-common_7.0-5 sbuild-build-depends-bali-phy-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-6 tar_1.30+dfsg-4 tzdata_2018i-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 uuid-dev_2.33.1-0.1 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 x11proto-xext-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 22 20:02:08 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bali-phy_3.4.1+dfsg-1.dsc dpkg-source: info: extracting bali-phy in /<>/bali-phy-3.4.1+dfsg dpkg-source: info: unpacking bali-phy_3.4.1+dfsg.orig.tar.xz dpkg-source: info: unpacking bali-phy_3.4.1+dfsg-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-9623a59f-a1f1-460e-9aea-810fd7a596ba SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bali-phy dpkg-buildpackage: info: source version 3.4.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Benjamin Redelings dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules build-arch dh build-arch --buildsystem=meson dh_update_autotools_config -a -O--buildsystem=meson dh_autoreconf -a -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/bali-phy-3.4.1+dfsg' dh_auto_configure -- -Dextra-tools=false cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf --libexecdir=lib/arm-linux-gnueabihf --cross-file /<>/bali-phy-3.4.1\+dfsg/debian/.debhelper/generated/_source/meson-cross-file.conf -Dextra-tools=false The Meson build system Version: 0.49.0 Source dir: /<>/bali-phy-3.4.1+dfsg Build dir: /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf Build type: cross build Project name: bali-phy Project version: 3.4.1 Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now' Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now' Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' Native C compiler: cc (gcc 8.2.0 "cc (Debian 8.2.0-16) 8.2.0") Cross C compiler: /usr/bin/arm-linux-gnueabihf-gcc (gcc 8.2.0) Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now' Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now' Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' Native C++ compiler: c++ (gcc 8.2.0 "c++ (Debian 8.2.0-16) 8.2.0") Cross C++ compiler: /usr/bin/arm-linux-gnueabihf-g++ (gcc 8.2.0) Host machine cpu family: arm Host machine cpu: arm7hlf Target machine cpu family: arm Target machine cpu: arm7hlf Build machine cpu family: x86_64 Build machine cpu: x86_64 Has header "sys/resource.h" : YES Has header "fenv.h" : YES Checking for function "log2" : YES Checking for function "feenableexcept" : YES Configuring config.h using configuration Compiler for C++ supports arguments -Wno-maybe-uninitialized -Wmaybe-uninitialized: YES Cross dependency cairo found: YES 1.16.0 Cross dependency Boost (program_options, random, system, filesystem, chrono) found: YES 1.67 Cross dependency eigen3 found: YES 3.3.7 Has header "nlohmann/json.hpp" : YES Library dl found: YES Program pandoc found: YES (/usr/bin/pandoc) Program /<>/bali-phy-3.4.1+dfsg/tests/run-tests.py found: YES (/<>/bali-phy-3.4.1+dfsg/tests/run-tests.py) Build targets in project: 78 Option buildtype is: plain [default: release] Found ninja-1.8.2 at /usr/bin/ninja make[1]: Leaving directory '/<>/bali-phy-3.4.1+dfsg' dh_auto_build -a -O--buildsystem=meson cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j1 -v [1/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@libsums@sta -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -fno-fast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@libsums@sta/computation_machine_sums.cc.o' -MF 'src/25a6634@@libsums@sta/computation_machine_sums.cc.o.d' -o 'src/25a6634@@libsums@sta/computation_machine_sums.cc.o' -c ../src/computation/machine/sums.cc [2/256] rm -f src/liblibsums.a && /usr/bin/arm-linux-gnueabihf-ar csrD src/liblibsums.a 'src/25a6634@@libsums@sta/computation_machine_sums.cc.o' [3/256] /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /<>/bali-phy-3.4.1+dfsg/src @git_message@ '(.*)' /<>/bali-phy-3.4.1+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)' [4/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/io.cc.o' -MF 'src/25a6634@@bali-phy@sta/io.cc.o.d' -o 'src/25a6634@@bali-phy@sta/io.cc.o' -c ../src/io.cc [5/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/util.cc.o' -MF 'src/25a6634@@bali-phy@sta/util.cc.o.d' -o 'src/25a6634@@bali-phy@sta/util.cc.o' -c ../src/util.cc [6/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/tree_sequencetree.cc.o' -MF 'src/25a6634@@bali-phy@sta/tree_sequencetree.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tree_sequencetree.cc.o' -c ../src/tree/sequencetree.cc [7/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/tree_tree.cc.o' -MF 'src/25a6634@@bali-phy@sta/tree_tree.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tree_tree.cc.o' -c ../src/tree/tree.cc [8/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/sequence_alphabet.cc.o' -MF 'src/25a6634@@bali-phy@sta/sequence_alphabet.cc.o.d' -o 'src/25a6634@@bali-phy@sta/sequence_alphabet.cc.o' -c ../src/sequence/alphabet.cc [9/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/sequence_sequence.cc.o' -MF 'src/25a6634@@bali-phy@sta/sequence_sequence.cc.o.d' -o 'src/25a6634@@bali-phy@sta/sequence_sequence.cc.o' -c ../src/sequence/sequence.cc [10/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/tree_tree-util.cc.o' -MF 'src/25a6634@@bali-phy@sta/tree_tree-util.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tree_tree-util.cc.o' -c ../src/tree/tree-util.cc [11/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/tools_read-trees.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_read-trees.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_read-trees.cc.o' -c ../src/tools/read-trees.cc [12/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/sequence_sequence-format.cc.o' -MF 'src/25a6634@@bali-phy@sta/sequence_sequence-format.cc.o.d' -o 'src/25a6634@@bali-phy@sta/sequence_sequence-format.cc.o' -c ../src/sequence/sequence-format.cc [13/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/alignment_alignment-util.cc.o' -MF 'src/25a6634@@bali-phy@sta/alignment_alignment-util.cc.o.d' -o 'src/25a6634@@bali-phy@sta/alignment_alignment-util.cc.o' -c ../src/alignment/alignment-util.cc [14/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/rng.cc.o' -MF 'src/25a6634@@bali-phy@sta/rng.cc.o.d' -o 'src/25a6634@@bali-phy@sta/rng.cc.o' -c ../src/rng.cc ../src/rng.cc: In function ‘long unsigned int get_random_seed()’: ../src/rng.cc:42:12: warning: left shift count >= width of type [-Wshift-count-overflow] s <<= bits_per_read; ^~~~~~~~~~~~~ [15/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/alignment_load.cc.o' -MF 'src/25a6634@@bali-phy@sta/alignment_load.cc.o.d' -o 'src/25a6634@@bali-phy@sta/alignment_load.cc.o' -c ../src/alignment/load.cc [16/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/alignment_alignment.cc.o' -MF 'src/25a6634@@bali-phy@sta/alignment_alignment.cc.o.d' -o 'src/25a6634@@bali-phy@sta/alignment_alignment.cc.o' -c ../src/alignment/alignment.cc [17/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/tools_statistics.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_statistics.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_statistics.cc.o' -c ../src/tools/statistics.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/arm-linux-gnueabihf/include/c++/8/valarray:38, from ../src/tools/statistics.H:24, from ../src/tools/statistics.cc:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/arm-linux-gnueabihf/include/c++/8/valarray:38, from ../src/tools/statistics.H:24, from ../src/tools/statistics.cc:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘double statistics::quantile(std::vector, double)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘std::pair statistics::central_confidence_interval(std::vector, double)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘std::pair statistics::HPD_confidence_interval(std::vector, double)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘std::pair statistics::mode(std::vector)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘double statistics::probability_x_less_than_y(const std::valarray&, const std::valarray&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [18/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/tools_partition.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_partition.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_partition.cc.o' 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-Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/alignment_alignment-random.cc.o' -MF 'src/25a6634@@bali-phy@sta/alignment_alignment-random.cc.o.d' -o 'src/25a6634@@bali-phy@sta/alignment_alignment-random.cc.o' -c ../src/alignment/alignment-random.cc [21/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 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-std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/tools_distance-report.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_distance-report.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_distance-report.cc.o' -c ../src/tools/distance-report.cc [31/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/n_indels.cc.o' -MF 'src/25a6634@@bali-phy@sta/n_indels.cc.o.d' -o 'src/25a6634@@bali-phy@sta/n_indels.cc.o' -c ../src/n_indels.cc [32/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/tools_inverse.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_inverse.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_inverse.cc.o' -c ../src/tools/inverse.cc [33/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/tools_joint-A-T.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_joint-A-T.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_joint-A-T.cc.o' -c ../src/tools/joint-A-T.cc [34/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/tools_distance-methods.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_distance-methods.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_distance-methods.cc.o' -c ../src/tools/distance-methods.cc [35/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@sta/tools_consensus-tree.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_consensus-tree.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_consensus-tree.cc.o' -c ../src/tools/consensus-tree.cc [36/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_driver.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_driver.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_driver.cc.o' -c ../src/parser/driver.cc [37/256] rm -f src/libbali-phy.a && /usr/bin/arm-linux-gnueabihf-ar csrD src/libbali-phy.a 'src/25a6634@@bali-phy@sta/io.cc.o' 'src/25a6634@@bali-phy@sta/util.cc.o' 'src/25a6634@@bali-phy@sta/tree_sequencetree.cc.o' 'src/25a6634@@bali-phy@sta/tree_tree.cc.o' 'src/25a6634@@bali-phy@sta/sequence_alphabet.cc.o' 'src/25a6634@@bali-phy@sta/sequence_sequence.cc.o' 'src/25a6634@@bali-phy@sta/tree_tree-util.cc.o' 'src/25a6634@@bali-phy@sta/tools_read-trees.cc.o' 'src/25a6634@@bali-phy@sta/sequence_sequence-format.cc.o' 'src/25a6634@@bali-phy@sta/alignment_alignment-util.cc.o' 'src/25a6634@@bali-phy@sta/rng.cc.o' 'src/25a6634@@bali-phy@sta/alignment_load.cc.o' 'src/25a6634@@bali-phy@sta/alignment_alignment.cc.o' 'src/25a6634@@bali-phy@sta/tools_statistics.cc.o' 'src/25a6634@@bali-phy@sta/tools_partition.cc.o' 'src/25a6634@@bali-phy@sta/tools_tree-dist.cc.o' 'src/25a6634@@bali-phy@sta/alignment_alignment-random.cc.o' 'src/25a6634@@bali-phy@sta/setup.cc.o' 'src/25a6634@@bali-phy@sta/tree_randomtree.cc.o' 'src/25a6634@@bali-phy@sta/util-random.cc.o' 'src/25a6634@@bali-phy@sta/tools_parsimony.cc.o' 'src/25a6634@@bali-phy@sta/alignment_index-matrix.cc.o' 'src/25a6634@@bali-phy@sta/tools_mctree.cc.o' 'src/25a6634@@bali-phy@sta/tools_stats-table.cc.o' 'src/25a6634@@bali-phy@sta/tools_findroot.cc.o' 'src/25a6634@@bali-phy@sta/tools_optimize.cc.o' 'src/25a6634@@bali-phy@sta/tools_distance-report.cc.o' 'src/25a6634@@bali-phy@sta/n_indels.cc.o' 'src/25a6634@@bali-phy@sta/tools_inverse.cc.o' 'src/25a6634@@bali-phy@sta/tools_joint-A-T.cc.o' 'src/25a6634@@bali-phy@sta/tools_distance-methods.cc.o' 'src/25a6634@@bali-phy@sta/tools_consensus-tree.cc.o' [38/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_dp_hmm.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_dp_hmm.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_dp_hmm.cc.o' -c ../src/dp/dp_hmm.cc [39/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_desugar.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_desugar.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_desugar.cc.o' -c ../src/parser/desugar.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/parser/desugar.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:159:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘std::vector desugar_state::parse_fundecls(const std::vector&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/parser/desugar.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘expression_ref desugar_state::desugar(const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1318:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 { return _M_erase(begin() + (__position - cbegin())); } ^ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1318:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 { return _M_erase(begin() + (__position - cbegin())); } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘CDecls desugar_state::desugar_decls(const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [40/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_desugar-case.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_desugar-case.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_desugar-case.cc.o' -c ../src/parser/desugar-case.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:515:7: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 vector(initializer_list __l, ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function ‘static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = expression_ref; _Functor = desugar_state::match_constant(const std::vector&, const std::vector&)::; _ArgTypes = {const expression_ref&}]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘failable_expression desugar_state::match_constant(const std::vector&, const std::vector&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘failable_expression desugar_state::match_var(const std::vector&, const std::vector&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ ../src/parser/desugar-case.cc: In member function ‘void desugar_state::clean_up_pattern(const expression_ref&, equation_info_t&)’: ../src/parser/desugar-case.cc:310:17: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 rhs.add_binding({{y, x}}); ~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ ../src/parser/desugar-case.cc:330:17: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 rhs.add_binding({{y, x}}); ~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘expression_ref desugar_state::def_function(const std::vector&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [41/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_rename.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_rename.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_rename.cc.o' -c ../src/parser/rename.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/parser/rename.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/deque:66, from ../src/parser/rename.cc:5: /usr/arm-linux-gnueabihf/include/c++/8/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 deque<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/parser/rename.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘bound_var_info renamer_state::rename_pattern(expression_ref&, bool)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [42/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/tools_parsimony2.cc.o' -MF 'src/25a6634@@bali-phy@exe/tools_parsimony2.cc.o.d' -o 'src/25a6634@@bali-phy@exe/tools_parsimony2.cc.o' -c ../src/tools/parsimony2.cc [43/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_lexer.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_lexer.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_lexer.cc.o' -c ../src/parser/lexer.cc [44/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_parser.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_parser.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_parser.cc.o' -c ../src/parser/parser.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from parser.y:14, from parser.cc:46: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:515:7: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 vector(initializer_list __l, ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from parser.y:14, from parser.cc:46: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from parser.y:14, from parser.cc:46: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from parser.y:14, from parser.cc:46: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {yy::parser::stack_symbol_type}; _Tp = yy::parser::stack_symbol_type; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void yy::stack::push(T&) [with T = yy::parser::stack_symbol_type; S = std::vector >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void yy::parser::yypush_(const char*, yy::parser::stack_symbol_type&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref yy_make_string(const string&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from parser.y:14, from parser.cc:46: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘expression_ref make_module(const string&, const expression_ref&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘expression_ref type_apply(const expression_ref&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘expression_ref yy_make_alt(const expression_ref&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘expression_ref make_lambda(const std::vector&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from parser.y:14, from parser.cc:46: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref make_infix(const string&, boost::optional&, std::vector >&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ parser.y: In member function ‘virtual int yy::parser::parse()’: parser.y:887:55: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 parser.y:976:55: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 parser.y:1131:45: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 parser.y:1132:45: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 parser.y:1133:45: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 parser.y:1134:45: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 [45/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/substitution_substitution.cc.o' -MF 'src/25a6634@@bali-phy@exe/substitution_substitution.cc.o.d' -o 'src/25a6634@@bali-phy@exe/substitution_substitution.cc.o' -c ../src/substitution/substitution.cc [46/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/util_ptree.cc.o' -MF 'src/25a6634@@bali-phy@exe/util_ptree.cc.o.d' -o 'src/25a6634@@bali-phy@exe/util_ptree.cc.o' -c ../src/util/ptree.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util/ptree.H:5, from ../src/util/ptree.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/util/ptree.H:5, from ../src/util/ptree.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const ptree&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1225:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(begin() + __offset, __n, __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1225:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(begin() + __offset, __n, __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [47/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_moves.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_moves.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_moves.cc.o' -c ../src/mcmc/moves.cc [48/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/math_exponential.cc.o' -MF 'src/25a6634@@bali-phy@exe/math_exponential.cc.o.d' -o 'src/25a6634@@bali-phy@exe/math_exponential.cc.o' -c ../src/math/exponential.cc [49/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/math_eigenvalue.cc.o' -MF 'src/25a6634@@bali-phy@exe/math_eigenvalue.cc.o.d' -o 'src/25a6634@@bali-phy@exe/math_eigenvalue.cc.o' -c ../src/math/eigenvalue.cc [50/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/models_parameters.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_parameters.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_parameters.cc.o' -c ../src/models/parameters.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/sequence/alphabet.H:27, from ../src/models/parameters.H:34, from ../src/models/parameters.cc:31: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/sequence/alphabet.H:27, from ../src/models/parameters.H:34, from ../src/models/parameters.cc:31: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor ‘data_partition_constants::data_partition_constants(Parameters*, int, const alignment&, const std::vector&, int)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [51/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/prior.cc.o' -MF 'src/25a6634@@bali-phy@exe/prior.cc.o.d' -o 'src/25a6634@@bali-phy@exe/prior.cc.o' -c ../src/prior.cc [52/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_mcmc.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_mcmc.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_mcmc.cc.o' -c ../src/mcmc/mcmc.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/mcmc/mcmc.H:35, from ../src/mcmc/mcmc.cc:34: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/mcmc/mcmc.H:35, from ../src/mcmc/mcmc.cc:34: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void MCMC::MoveGroupBase::add(double, const MCMC::Move&, bool)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [53/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/probability_choose.cc.o' -MF 'src/25a6634@@bali-phy@exe/probability_choose.cc.o.d' -o 'src/25a6634@@bali-phy@exe/probability_choose.cc.o' -c ../src/probability/choose.cc [54/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -c ../src/mcmc/sample-branch-lengths.cc [55/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/bali-phy.cc.o' -MF 'src/25a6634@@bali-phy@exe/bali-phy.cc.o.d' -o 'src/25a6634@@bali-phy@exe/bali-phy.cc.o' -c ../src/bali-phy.cc [56/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/util_text.cc.o' -MF 'src/25a6634@@bali-phy@exe/util_text.cc.o.d' -o 'src/25a6634@@bali-phy@exe/util_text.cc.o' -c ../src/util/text.cc [57/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/models_TreeInterface.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_TreeInterface.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_TreeInterface.cc.o' -c ../src/models/TreeInterface.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tree/tree.H:31, from ../src/models/TreeInterface.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘std::__cxx11::string write(const TreeInterface&, const std::vector >&, bool)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [58/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_hmm.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_hmm.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_hmm.cc.o' -c ../src/dp/hmm.cc [59/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_dp-engine.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_dp-engine.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_dp-engine.cc.o' -c ../src/dp/dp-engine.cc [60/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_dp-array.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_dp-array.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_dp-array.cc.o' -c ../src/dp/dp-array.cc [61/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_dp-matrix.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_dp-matrix.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_dp-matrix.cc.o' -c ../src/dp/dp-matrix.cc [62/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_3way.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_3way.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_3way.cc.o' -c ../src/dp/3way.cc [63/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_2way.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_2way.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_2way.cc.o' -c ../src/dp/2way.cc [64/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-alignment.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-alignment.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-alignment.cc.o' -c ../src/mcmc/sample-alignment.cc [65/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-node.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-node.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-node.cc.o' -c ../src/mcmc/sample-node.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tree/tree.H:31, from ../src/mcmc/sample.H:23, from ../src/mcmc/sample-node.cc:28: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘int sample_node_multi(std::vector&, const std::vector >&, const std::vector&, bool, bool)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [66/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/imodel_imodel.cc.o' -MF 'src/25a6634@@bali-phy@exe/imodel_imodel.cc.o.d' -o 'src/25a6634@@bali-phy@exe/imodel_imodel.cc.o' -c ../src/imodel/imodel.cc [67/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_5way.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_5way.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_5way.cc.o' -c ../src/dp/5way.cc [68/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -c ../src/mcmc/sample-topology-NNI.cc [69/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-two-nodes.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -c ../src/mcmc/sample-two-nodes.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tree/tree.H:31, from ../src/mcmc/sample.H:23, from ../src/mcmc/sample-two-nodes.cc:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘int sample_two_nodes_multi(std::vector&, const std::vector&, const std::vector&, bool, bool)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [70/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_dp-cube.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_dp-cube.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_dp-cube.cc.o' -c ../src/dp/dp-cube.cc [71/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-cube.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-cube.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-cube.cc.o' -c ../src/mcmc/sample-cube.cc [72/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/models_setup.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_setup.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_setup.cc.o' -c ../src/models/setup.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/models/setup.cc:79: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pretty_model_t}; _Tp = pretty_model_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor ‘pretty_model_t::pretty_model_t(const ptree&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/models/setup.cc:79: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘std::pair > > get_model_function(const Rules&, const ptree&, const names_in_scope_t&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ../src/util/json.hh:3, from ../src/util/ptree.H:12, from ../src/models/setup.H:8, from ../src/models/setup.cc:81: /usr/include/nlohmann/json.hpp: In constructor ‘nlohmann::basic_json::basic_json(std::initializer_list >, bool, nlohmann::basic_json::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 basic_json(std::initializer_list init, ^~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/models/setup.cc:79: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/models/setup.cc:79: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](nlohmann::basic_json::size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1225:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(begin() + __offset, __n, __x); ^~~~~~~~~~~~~~ In file included from ../src/util/json.hh:3, from ../src/util/ptree.H:12, from ../src/models/setup.H:8, from ../src/models/setup.cc:81: /usr/include/nlohmann/json.hpp: In function ‘void to_json(nlohmann::json&, const pretty_model_t&)’: /usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 return basic_json(init, false, value_t::array); ^ /usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 return basic_json(init, false, value_t::array); ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/models/setup.cc:79: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [73/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_help.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_help.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_help.cc.o' -c ../src/startup/help.cc [74/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -c ../src/mcmc/sample-topology-SPR.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tree/tree.H:31, from ../src/mcmc/sample.H:23, from ../src/mcmc/sample-topology-SPR.cc:30: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/tree/tree.H:31, from ../src/mcmc/sample.H:23, from ../src/mcmc/sample-topology-SPR.cc:30: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘std::vector spr_info::convert_to_vector(const std::map&) const [with U = log_double_t]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [75/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_alignment-sums.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_alignment-sums.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_alignment-sums.cc.o' -c ../src/dp/alignment-sums.cc [76/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/probability_probability.cc.o' -MF 'src/25a6634@@bali-phy@exe/probability_probability.cc.o.d' -o 'src/25a6634@@bali-phy@exe/probability_probability.cc.o' -c ../src/probability/probability.cc [77/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/models_model.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_model.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_model.cc.o' -c ../src/models/model.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/boost/detail/container_fwd.hpp:93, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:760, from /usr/include/boost/type_index/stl_type_index.hpp:43, from /usr/include/boost/type_index.hpp:29, from /usr/include/boost/variant/variant.hpp:21, from /usr/include/boost/variant.hpp:17, from ../src/models/model.cc:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘std::vector model_parameter_expressions(const Model&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [78/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/alignment_alignment-constraint.cc.o' -MF 'src/25a6634@@bali-phy@exe/alignment_alignment-constraint.cc.o.d' -o 'src/25a6634@@bali-phy@exe/alignment_alignment-constraint.cc.o' -c ../src/alignment/alignment-constraint.cc [79/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/monitor.cc.o' -MF 'src/25a6634@@bali-phy@exe/monitor.cc.o.d' -o 'src/25a6634@@bali-phy@exe/monitor.cc.o' -c ../src/monitor.cc ../src/monitor.cc: In function ‘void report_mem()’: ../src/monitor.cc:113:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(cmd.str().c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~ [80/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/myexception.cc.o' -MF 'src/25a6634@@bali-phy@exe/myexception.cc.o.d' -o 'src/25a6634@@bali-phy@exe/myexception.cc.o' -c ../src/myexception.cc [81/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/math_pow2.cc.o' -MF 'src/25a6634@@bali-phy@exe/math_pow2.cc.o.d' -o 'src/25a6634@@bali-phy@exe/math_pow2.cc.o' -c ../src/math/pow2.cc [82/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/substitution_parsimony.cc.o' -MF 'src/25a6634@@bali-phy@exe/substitution_parsimony.cc.o.d' -o 'src/25a6634@@bali-phy@exe/substitution_parsimony.cc.o' -c ../src/substitution/parsimony.cc [83/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_proposals.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_proposals.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_proposals.cc.o' -c ../src/mcmc/proposals.cc [84/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/n_indels2.cc.o' -MF 'src/25a6634@@bali-phy@exe/n_indels2.cc.o.d' -o 'src/25a6634@@bali-phy@exe/n_indels2.cc.o' -c ../src/n_indels2.cc [85/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/alignment_alignment-util2.cc.o' -MF 'src/25a6634@@bali-phy@exe/alignment_alignment-util2.cc.o.d' -o 'src/25a6634@@bali-phy@exe/alignment_alignment-util2.cc.o' -c ../src/alignment/alignment-util2.cc [86/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@SMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -MF 'src/builtins/2382537@@SMC@sha/SMC.cc.o.d' -o 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -c ../src/builtins/SMC.cc [87/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/version.cc.o' -MF 'src/25a6634@@bali-phy@exe/version.cc.o.d' -o 'src/25a6634@@bali-phy@exe/version.cc.o' -c ../src/version.cc ../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] s<<__DATE__<<" "<<__TIME__; ^~~~~~~~ ../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] s<<__DATE__<<" "<<__TIME__; ^~~~~~~~ [88/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_slice-sampling.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_slice-sampling.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_slice-sampling.cc.o' -c ../src/mcmc/slice-sampling.cc [89/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/timer_stack.cc.o' -MF 'src/25a6634@@bali-phy@exe/timer_stack.cc.o.d' -o 'src/25a6634@@bali-phy@exe/timer_stack.cc.o' -c ../src/timer_stack.cc [90/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_setup.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_setup.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_setup.cc.o' -c ../src/mcmc/setup.cc [91/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_logger.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_logger.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_logger.cc.o' -c ../src/mcmc/logger.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/mcmc/mcmc.H:35, from ../src/mcmc/logger.cc:33: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/mcmc/mcmc.H:35, from ../src/mcmc/logger.cc:33: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘std::__cxx11::string MCMC::Get_Rao_Blackwellized_Parameter_Function::operator()(const Model&, long int)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [92/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_AIS.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_AIS.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_AIS.cc.o' -c ../src/mcmc/AIS.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/mcmc/mcmc.H:35, from ../src/mcmc/AIS.H:4, from ../src/mcmc/AIS.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/mcmc/mcmc.H:35, from ../src/mcmc/AIS.H:4, from ../src/mcmc/AIS.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void AIS_Sampler::go(owned_ptr&, std::ostream&, std::vector)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [93/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_operator.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_operator.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_operator.cc.o' -c ../src/computation/expression/operator.cc [94/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_expression.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_expression.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_expression.cc.o' -c ../src/computation/expression/expression.cc [95/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_constructor.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_constructor.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_constructor.cc.o' -c ../src/computation/expression/constructor.cc [96/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_expression_ref.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_expression_ref.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_expression_ref.cc.o' -c ../src/computation/expression/expression_ref.cc ../src/computation/expression/expression_ref.cc: In constructor ‘expression::expression(const expression_ref&, std::initializer_list)’: ../src/computation/expression/expression_ref.cc:240:1: note: parameter passing for argument of type ‘const std::initializer_list’ changed in GCC 7.1 expression::expression(const expression_ref& H, const std::initializer_list< expression_ref > S) ^~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/computation/expression/expression_ref.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/util.H:31, from ../src/computation/expression/expression_ref.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘std::unique_ptr operator+(const expression_ref&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘std::unique_ptr operator+(const expression&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [97/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_AST_node.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_AST_node.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_AST_node.cc.o' -c ../src/computation/expression/AST_node.cc [98/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_apply.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_apply.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_apply.cc.o' -c ../src/computation/expression/apply.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/expression/expression_ref.H:4, from ../src/computation/expression/apply.H:4, from ../src/computation/expression/apply.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/expression/expression_ref.H:4, from ../src/computation/expression/apply.H:4, from ../src/computation/expression/apply.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [99/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_substitute.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_substitute.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_substitute.cc.o' -c ../src/computation/expression/substitute.cc [100/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_indexify.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_indexify.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_indexify.cc.o' -c ../src/computation/expression/indexify.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/expression/indexify.H:4, from ../src/computation/expression/indexify.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref indexify(const expression_ref&, std::vector&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref deindexify(const expression_ref&, const std::vector&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [101/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_let.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_let.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_let.cc.o' -c ../src/computation/expression/let.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘expression_ref indexed_let_expression(const std::vector&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘void get_decls(const expression_ref&, CDecls&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref make_decls(const CDecls&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘expression_ref let_expression(const CDecls&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref make_topdecls(const CDecls&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [102/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_case.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_case.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_case.cc.o' -c ../src/computation/expression/case.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/lambda.H:4, from ../src/computation/expression/case.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/lambda.H:4, from ../src/computation/expression/case.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘bool parse_case_expression(const expression_ref&, expression_ref&, std::vector&, std::vector&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘expression_ref make_case_expression(const expression_ref&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/lambda.H:4, from ../src/computation/expression/case.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/lambda.H:4, from ../src/computation/expression/case.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘expression_ref make_alt(const expression_ref&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/lambda.H:4, from ../src/computation/expression/case.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref make_alts(const std::vector&, const std::vector&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [103/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_trim.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_trim.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_trim.cc.o' -c ../src/computation/expression/trim.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/trim.H:4, from ../src/computation/expression/trim.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref make_trim(const expression_ref&, const std::vector&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/trim.H:4, from ../src/computation/expression/trim.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/trim.H:4, from ../src/computation/expression/trim.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref remap_free_indices(const expression_ref&, const std::vector&, int)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [104/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_tuple.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_tuple.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_tuple.cc.o' -c ../src/computation/expression/tuple.cc [105/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_list.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_list.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_list.cc.o' -c ../src/computation/expression/list.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/expression/list.H:4, from ../src/computation/expression/list.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/expression/list.H:4, from ../src/computation/expression/list.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘expression_ref cons(const expression_ref&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘std::vector get_ref_vector_from_list(const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/expression/list.H:4, from ../src/computation/expression/list.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref char_list(const string&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [106/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_var.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_var.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_var.cc.o' -c ../src/computation/expression/var.cc [107/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_lambda.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_lambda.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_lambda.cc.o' -c ../src/computation/expression/lambda.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/lambda.H:4, from ../src/computation/expression/lambda.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref lambda_expression(const Operator&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [108/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_args.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_args.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_args.cc.o' -c ../src/computation/machine/args.cc [109/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_tokens.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_tokens.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_tokens.cc.o' -c ../src/computation/machine/tokens.cc [110/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_preprocess.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_preprocess.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_preprocess.cc.o' -c ../src/computation/preprocess.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/machine/graph_register.H:5, from ../src/computation/preprocess.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref graph_normalize(const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [111/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_graph_register.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_graph_register.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_graph_register.cc.o' -c ../src/computation/machine/graph_register.cc [112/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_show_graph.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_show_graph.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_show_graph.cc.o' -c ../src/computation/machine/show_graph.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ../src/util.H:37, from ../src/object.H:7, from ../src/computation/machine/graph_register.H:7, from ../src/computation/machine/show_graph.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ../src/util.H:37, from ../src/object.H:7, from ../src/computation/machine/graph_register.H:7, from ../src/computation/machine/show_graph.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In function ‘void discover_graph_vars(const reg_heap&, int, std::map&, const std::map, int>&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [113/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_module.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_module.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_module.cc.o' -c ../src/computation/module.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘void parse_combinator_application(const expression_ref&, std::__cxx11::string&, std::vector&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘std::vector peel_lambdas(expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘expression_ref func_type(const expression_ref&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/set:60, from ../src/computation/module.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique(_II, _II) [with _InputIterator = std::_Rb_tree_const_iterator >; _Key = var; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2463:7: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator >’ changed in GCC 7.1 _Rb_tree<_Key, _Val, _KoV, _Cmp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2463:7: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref rename_top_level(const expression_ref&, const string&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/set:60, from ../src/computation/module.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, symbol_info>; _KeyOfValue = std::_Select1st, symbol_info> >; _Compare = std::less >; _Alloc = std::allocator, symbol_info> >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, symbol_info>, std::_Select1st, symbol_info> >, std::less >, std::allocator, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, symbol_info> >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ../src/computation/module.H:5, from ../src/computation/module.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = symbol_info; _Compare = std::less >; _Alloc = std::allocator, symbol_info> >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, symbol_info>, std::_Select1st, symbol_info> >, std::less >, std::allocator, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, symbol_info> >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function ‘void Module::export_symbol(const symbol_info&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, symbol_info>, std::_Select1st, symbol_info> >, std::less >, std::allocator, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, symbol_info> >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function ‘void Module::add_symbol(const symbol_info&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, symbol_info>, std::_Select1st, symbol_info> >, std::less >, std::allocator, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, symbol_info> >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function ‘void Module::import_small_decls(const Program&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:892:4: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator >’ changed in GCC 7.1 { _M_t._M_insert_unique(__first, __last); } ^~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void Module::load_builtins(const module_loader&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void Module::load_constructors()’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void Module::optimize(const Program&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void Module::compile(const Program&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [114/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_evaluate.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_evaluate.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_evaluate.cc.o' -c ../src/computation/machine/evaluate.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/machine/graph_register.H:5, from ../src/computation/machine/evaluate.cc:5: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const closure&}; _Tp = closure; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/machine/graph_register.H:5, from ../src/computation/machine/evaluate.cc:5: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void reg_heap::incremental_evaluate_from_call(int, closure&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘std::pair reg_heap::incremental_evaluate_(int)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [115/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_gc.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_gc.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_gc.cc.o' -c ../src/computation/machine/gc.cc [116/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_reroot.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_reroot.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_reroot.cc.o' -c ../src/computation/machine/reroot.cc [117/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_operations.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_operations.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_operations.cc.o' -c ../src/computation/operations.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/operations.H:4, from ../src/computation/operations.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘closure apply_op(OperationArgs&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [118/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_loader.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_loader.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_loader.cc.o' -c ../src/computation/loader.cc [119/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_context.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_context.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_context.cc.o' -c ../src/computation/context.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/closure.H:4, from ../src/computation/context.H:4, from ../src/computation/context.cc:4: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [120/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_closure.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_closure.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_closure.cc.o' -c ../src/computation/closure.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/closure.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘expression_ref deindexify(const closure&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [121/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_optimization_let-float.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_optimization_let-float.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_optimization_let-float.cc.o' -c ../src/computation/optimization/let-float.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/optimization/let-float.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/optimization/let-float.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘expression_ref move_lets(bool, expression_ref, std::vector >&, const std::set&, const std::set&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/optimization/let-float.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [122/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_program.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_program.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_program.cc.o' -c ../src/computation/program.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/program.H:4, from ../src/computation/program.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Module}; _Tp = Module; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Module&}; _Tp = Module; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void Program::add(const string&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/program.H:4, from ../src/computation/program.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void Program::add(const Module&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [123/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-tri.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-tri.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-tri.cc.o' -c ../src/mcmc/sample-tri.cc [124/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_A-T-model.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_A-T-model.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_A-T-model.cc.o' -c ../src/startup/A-T-model.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/startup/A-T-model.H:4, from ../src/startup/A-T-model.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/startup/A-T-model.H:4, from ../src/startup/A-T-model.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘void setup_heating(int, const boost::program_options::variables_map&, Parameters&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/startup/A-T-model.H:4, from ../src/startup/A-T-model.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void nlohmann::basic_json::push_back(nlohmann::basic_json&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../src/util/json.hh:3, from ../src/computation/context.H:8, from ../src/models/model.H:39, from ../src/models/parameters.H:36, from ../src/startup/A-T-model.H:10, from ../src/startup/A-T-model.cc:1: /usr/include/nlohmann/json.hpp: In constructor ‘nlohmann::basic_json::basic_json(std::initializer_list >, bool, nlohmann::basic_json::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 basic_json(std::initializer_list init, ^~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/startup/A-T-model.H:4, from ../src/startup/A-T-model.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘nlohmann::json log_summary(std::ostream&, std::ostream&, std::ostream&, const std::vector&, const std::vector&, const std::vector&, const model_t&, const Parameters&, const boost::program_options::variables_map&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ../src/util/json.hh:3, from ../src/computation/context.H:8, from ../src/models/model.H:39, from ../src/models/parameters.H:36, from ../src/startup/A-T-model.H:10, from ../src/startup/A-T-model.cc:1: /usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 return basic_json(init, false, value_t::array); ^ /usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 return basic_json(init, false, value_t::array); ^ /usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 return basic_json(init, false, value_t::array); ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/startup/A-T-model.H:4, from ../src/startup/A-T-model.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {model_t}; _Tp = model_t; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘std::vector get_imodels(const Rules&, const shared_items >&, const SequenceTree&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘owned_ptr create_A_and_T_model(const Rules&, boost::program_options::variables_map&, const std::shared_ptr&, std::ostream&, std::ostream&, std::ostream&, nlohmann::json&, int)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [125/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_files.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_files.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_files.cc.o' -c ../src/startup/files.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/boost/filesystem/path_traits.hpp:26, from /usr/include/boost/filesystem/path.hpp:25, from /usr/include/boost/filesystem/operations.hpp:25, from ../src/startup/files.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘void run_info(nlohmann::json&, int, int, char**)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [126/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_loggers.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_loggers.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_loggers.cc.o' -c ../src/startup/loggers.cc [127/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_system.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_system.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_system.cc.o' -c ../src/startup/system.cc [128/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_cmd_line.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_cmd_line.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_cmd_line.cc.o' -c ../src/startup/cmd_line.cc [129/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/models_rules.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_rules.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_rules.cc.o' -c ../src/models/rules.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/models/rules.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘ptree parse_constraints(const ptree&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/set:60, from ../src/models/rules.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less >, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ../src/models/rules.H:5, from ../src/models/rules.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less >, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/models/rules.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [130/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_045a99f1ea365010eaf872ba38f011c164703d2e.dat [131/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/models_parse.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_parse.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_parse.cc.o' -c ../src/models/parse.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:63, from ../src/models/parse.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >; _ForwardIterator = std::pair, ptree>*; bool _TrivialValueTypes = false]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In copy constructor ‘ptree::ptree(const ptree&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/models/parse.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair, std::allocator >, ptree>&}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:63, from ../src/models/parse.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In member function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/models/parse.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘void handle_positional_args(ptree&, const Rules&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [132/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/models_translate.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_translate.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_translate.cc.o' -c ../src/models/translate.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/models/translate.H:4, from ../src/models/translate.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair, std::allocator >, ptree>&}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/models/translate.H:4, from ../src/models/translate.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘equations pass2(const Rules&, const ptree&, ptree&, std::set >, const std::vector, ptree> >&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [133/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/models_unification.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_unification.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_unification.cc.o' -c ../src/models/unification.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/set:60, from ../src/models/unification.H:5, from ../src/models/unification.cc:1: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, ptree>; _KeyOfValue = std::_Select1st, ptree> >; _Compare = std::less >; _Alloc = std::allocator, ptree> >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ptree>, std::_Select1st, ptree> >, std::less >, std::allocator, ptree> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, ptree> >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [134/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_optimization_simplifier.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_optimization_simplifier.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_optimization_simplifier.cc.o' -c ../src/computation/optimization/simplifier.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/operations.H:4, from ../src/computation/optimization/simplifier.cc:4: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/operations.H:4, from ../src/computation/optimization/simplifier.cc:4: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘substitution simplify_decls(const simplifier_options&, CDecls&, const substitution&, in_scope_set&, bool)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [135/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_paths.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_paths.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_paths.cc.o' -c ../src/startup/paths.cc [136/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_optimization_occurrence.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_optimization_occurrence.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_optimization_occurrence.cc.o' -c ../src/computation/optimization/occurrence.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/operations.H:4, from ../src/computation/optimization/occurrence.cc:4: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/operations.H:4, from ../src/computation/optimization/occurrence.cc:4: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘std::vector > > occurrence_analyze_decls(CDecls, std::set&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘std::pair > occurrence_analyzer(const expression_ref&, var_context)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [137/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_optimization_inliner.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_optimization_inliner.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_optimization_inliner.cc.o' -c ../src/computation/optimization/inliner.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/computation/operations.H:4, from ../src/computation/optimization/inliner.cc:4: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/computation/operations.H:4, from ../src/computation/optimization/inliner.cc:4: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘inline_context unknown_context()’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘inline_context argument_context(const inline_context&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘inline_context case_object_context(expression_ref, const inline_context&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘inline_context apply_object_context_one_arg(const inline_context&, const expression_ref&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [138/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_bool.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_bool.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_bool.cc.o' -c ../src/computation/expression/bool.cc [139/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@SModel@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -MF 'src/builtins/2382537@@SModel@sha/SModel.cc.o.d' -o 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -c ../src/builtins/SModel.cc [140/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@Range@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@Range@sha/Range.cc.o' -MF 'src/builtins/2382537@@Range@sha/Range.cc.o.d' -o 'src/builtins/2382537@@Range@sha/Range.cc.o' -c ../src/builtins/Range.cc [141/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/Range.so 'src/builtins/2382537@@Range@sha/Range.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [142/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@Array@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@Array@sha/Array.cc.o' -MF 'src/builtins/2382537@@Array@sha/Array.cc.o.d' -o 'src/builtins/2382537@@Array@sha/Array.cc.o' -c ../src/builtins/Array.cc [143/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@Distribution@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -MF 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o.d' -o 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -c ../src/builtins/Distribution.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/builtins/Distribution.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/builtins/Distribution.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘closure builtin_function_CRP_density(OperationArgs&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/builtins/Distribution.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/builtins/Distribution.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘closure builtin_function_sample_CRP(OperationArgs&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/builtins/Distribution.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/builtins/Distribution.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘closure builtin_function_sample_categorical(OperationArgs&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [144/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/Distribution.so 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [145/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/bali-phy 'src/25a6634@@bali-phy@exe/dp_dp_hmm.cc.o' 'src/25a6634@@bali-phy@exe/parser_desugar.cc.o' 'src/25a6634@@bali-phy@exe/parser_desugar-case.cc.o' 'src/25a6634@@bali-phy@exe/parser_rename.cc.o' 'src/25a6634@@bali-phy@exe/parser_driver.cc.o' 'src/25a6634@@bali-phy@exe/parser_lexer.cc.o' 'src/25a6634@@bali-phy@exe/parser_parser.cc.o' 'src/25a6634@@bali-phy@exe/substitution_substitution.cc.o' 'src/25a6634@@bali-phy@exe/util_ptree.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_moves.cc.o' 'src/25a6634@@bali-phy@exe/math_exponential.cc.o' 'src/25a6634@@bali-phy@exe/math_eigenvalue.cc.o' 'src/25a6634@@bali-phy@exe/models_parameters.cc.o' 'src/25a6634@@bali-phy@exe/prior.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_mcmc.cc.o' 'src/25a6634@@bali-phy@exe/probability_choose.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' 'src/25a6634@@bali-phy@exe/bali-phy.cc.o' 'src/25a6634@@bali-phy@exe/util_text.cc.o' 'src/25a6634@@bali-phy@exe/models_TreeInterface.cc.o' 'src/25a6634@@bali-phy@exe/dp_hmm.cc.o' 'src/25a6634@@bali-phy@exe/dp_dp-engine.cc.o' 'src/25a6634@@bali-phy@exe/dp_dp-array.cc.o' 'src/25a6634@@bali-phy@exe/dp_dp-matrix.cc.o' 'src/25a6634@@bali-phy@exe/dp_3way.cc.o' 'src/25a6634@@bali-phy@exe/dp_2way.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-alignment.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-node.cc.o' 'src/25a6634@@bali-phy@exe/imodel_imodel.cc.o' 'src/25a6634@@bali-phy@exe/dp_5way.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' 'src/25a6634@@bali-phy@exe/dp_dp-cube.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-cube.cc.o' 'src/25a6634@@bali-phy@exe/models_setup.cc.o' 'src/25a6634@@bali-phy@exe/startup_help.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' 'src/25a6634@@bali-phy@exe/dp_alignment-sums.cc.o' 'src/25a6634@@bali-phy@exe/probability_probability.cc.o' 'src/25a6634@@bali-phy@exe/models_model.cc.o' 'src/25a6634@@bali-phy@exe/alignment_alignment-constraint.cc.o' 'src/25a6634@@bali-phy@exe/monitor.cc.o' 'src/25a6634@@bali-phy@exe/myexception.cc.o' 'src/25a6634@@bali-phy@exe/math_pow2.cc.o' 'src/25a6634@@bali-phy@exe/substitution_parsimony.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_proposals.cc.o' 'src/25a6634@@bali-phy@exe/n_indels2.cc.o' 'src/25a6634@@bali-phy@exe/alignment_alignment-util2.cc.o' 'src/25a6634@@bali-phy@exe/tools_parsimony2.cc.o' 'src/25a6634@@bali-phy@exe/version.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_slice-sampling.cc.o' 'src/25a6634@@bali-phy@exe/timer_stack.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_setup.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_logger.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_AIS.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_operator.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_expression.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_constructor.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_expression_ref.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_AST_node.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_apply.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_substitute.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_indexify.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_let.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_case.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_trim.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_tuple.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_list.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_var.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_lambda.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_args.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_tokens.cc.o' 'src/25a6634@@bali-phy@exe/computation_preprocess.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_graph_register.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_show_graph.cc.o' 'src/25a6634@@bali-phy@exe/computation_module.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_evaluate.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_gc.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_reroot.cc.o' 'src/25a6634@@bali-phy@exe/computation_operations.cc.o' 'src/25a6634@@bali-phy@exe/computation_loader.cc.o' 'src/25a6634@@bali-phy@exe/computation_context.cc.o' 'src/25a6634@@bali-phy@exe/computation_closure.cc.o' 'src/25a6634@@bali-phy@exe/computation_optimization_let-float.cc.o' 'src/25a6634@@bali-phy@exe/computation_program.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-tri.cc.o' 'src/25a6634@@bali-phy@exe/startup_A-T-model.cc.o' 'src/25a6634@@bali-phy@exe/startup_files.cc.o' 'src/25a6634@@bali-phy@exe/startup_loggers.cc.o' 'src/25a6634@@bali-phy@exe/startup_system.cc.o' 'src/25a6634@@bali-phy@exe/startup_cmd_line.cc.o' 'src/25a6634@@bali-phy@exe/models_rules.cc.o' 'src/25a6634@@bali-phy@exe/models_parse.cc.o' 'src/25a6634@@bali-phy@exe/models_translate.cc.o' 'src/25a6634@@bali-phy@exe/models_unification.cc.o' 'src/25a6634@@bali-phy@exe/computation_optimization_simplifier.cc.o' 'src/25a6634@@bali-phy@exe/startup_paths.cc.o' 'src/25a6634@@bali-phy@exe/computation_optimization_occurrence.cc.o' 'src/25a6634@@bali-phy@exe/computation_optimization_inliner.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_bool.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,-export-dynamic -Wl,--start-group src/libbali-phy.a src/liblibsums.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -ldl -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [146/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/Array.so 'src/builtins/2382537@@Array@sha/Array.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [147/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@Data@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@Data@sha/Data.cc.o' -MF 'src/builtins/2382537@@Data@sha/Data.cc.o.d' -o 'src/builtins/2382537@@Data@sha/Data.cc.o' -c ../src/builtins/Data.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/builtins/Data.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘closure builtin_function_read_file(OperationArgs&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [148/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/Data.so 'src/builtins/2382537@@Data@sha/Data.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [149/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@Prelude@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -MF 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o.d' -o 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -c ../src/builtins/Prelude.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/builtins/../util.H:31, from ../src/builtins/../object.H:7, from ../src/builtins/../computation/machine/args.H:4, from ../src/builtins/Prelude.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/builtins/../util.H:31, from ../src/builtins/../object.H:7, from ../src/builtins/../computation/machine/args.H:4, from ../src/builtins/Prelude.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘closure builtin_function_vector_from_list(OperationArgs&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘closure builtin_function_error(OperationArgs&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [150/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/Prelude.so 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [151/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@Alphabet@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -MF 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o.d' -o 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -c ../src/builtins/Alphabet.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/builtins/../util.H:31, from ../src/builtins/../object.H:7, from ../src/builtins/../computation/machine/args.H:4, from ../src/builtins/Alphabet.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘closure builtin_function_alphabet_letters(OperationArgs&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [152/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/Alphabet.so 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [153/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@Pair@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -MF 'src/builtins/2382537@@Pair@sha/Pair.cc.o.d' -o 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -c ../src/builtins/Pair.cc [154/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/Pair.so 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [155/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@Modifiables@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -MF 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o.d' -o 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -c ../src/builtins/Modifiables.cc [156/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/Modifiables.so 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [157/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@Alignment@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -MF 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o.d' -o 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -c ../src/builtins/Alignment.cc [158/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/Alignment.so 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [159/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@PopGen@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -MF 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o.d' -o 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -c ../src/builtins/PopGen.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/builtins/PopGen.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/builtins/PopGen.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘closure builtin_function_remove_2nd_allele(OperationArgs&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/builtins/PopGen.cc:3: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘closure builtin_function_read_phase_file(OperationArgs&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘closure builtin_function_allele_frequency_spectrum(OperationArgs&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [160/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/PopGen.so 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [161/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/SModel.so 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [162/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@MCMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -MF 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o.d' -o 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -c ../src/builtins/MCMC.cc [163/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/MCMC.so 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [164/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@Vector@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -MF 'src/builtins/2382537@@Vector@sha/Vector.cc.o.d' -o 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -c ../src/builtins/Vector.cc [165/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/Vector.so 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [166/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@Environment@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -MF 'src/builtins/2382537@@Environment@sha/Environment.cc.o.d' -o 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -c ../src/builtins/Environment.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/builtins/../util.H:31, from ../src/builtins/../object.H:7, from ../src/builtins/../computation/machine/args.H:4, from ../src/builtins/Environment.cc:2: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘closure builtin_function_getArgs(OperationArgs&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [167/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/Environment.so 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [168/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/SMC.so 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [169/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/builtins/2382537@@Real@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/builtins/2382537@@Real@sha/Real.cc.o' -MF 'src/builtins/2382537@@Real@sha/Real.cc.o.d' -o 'src/builtins/2382537@@Real@sha/Real.cc.o' -c ../src/builtins/Real.cc [170/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/builtins/Real.so 'src/builtins/2382537@@Real@sha/Real.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Real.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [171/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@model_P@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -MF 'src/25a6634@@model_P@exe/tools_model_P.cc.o.d' -o 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -c ../src/tools/model_P.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tools/model_P.cc:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/tools/model_P.cc:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [172/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/model_P 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [173/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@statreport@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -MF 'src/25a6634@@statreport@exe/tools_statreport.cc.o.d' -o 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -c ../src/tools/statreport.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from ../src/util.H:34, from ../src/tools/statreport.cc:30: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from ../src/util.H:34, from ../src/tools/statreport.cc:30: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tools/statreport.cc:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/tools/statreport.cc:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘int get_burn_in(const std::vector&, double, int)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from ../src/util.H:34, from ../src/tools/statreport.cc:30: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘void show_median(boost::program_options::variables_map&, const string&, const std::vector >&, int, const std::vector&, bool, double&, double&, double&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/tools/statreport.cc:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from ../src/util.H:34, from ../src/tools/statreport.cc:30: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [174/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/statreport 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [175/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@stats-select@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -MF 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o.d' -o 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -c ../src/tools/stats-select.cc [176/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/stats-select 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [177/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-gild@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -MF 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o.d' -o 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -c ../src/tools/alignment-gild.cc [178/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignment-gild 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [179/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -MF 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o.d' -o 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -c ../src/tools/alignment-consensus.cc [180/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignment-consensus 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [181/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-max@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -MF 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o.d' -o 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -c ../src/tools/alignment-max.cc [182/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignment-max 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [183/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-chop-internal@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -MF 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o.d' -o 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -c ../src/tools/alignment-chop-internal.cc [184/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignment-chop-internal 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [185/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-indices@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -MF 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o.d' -o 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -c ../src/tools/alignment-indices.cc [186/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignment-indices 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [187/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-info@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -MF 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o.d' -o 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -c ../src/tools/alignment-info.cc [188/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignment-info 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [189/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-cat@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -MF 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o.d' -o 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -c ../src/tools/alignment-cat.cc [190/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignment-cat 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [191/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-translate@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -MF 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o.d' -o 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -c ../src/tools/alignment-translate.cc [192/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignment-translate 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [193/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-find@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -MF 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o.d' -o 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -c ../src/tools/alignment-find.cc [194/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignment-find 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [195/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@trees-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -MF 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o.d' -o 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -c ../src/tools/trees-consensus.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from ../src/tools/trees-consensus.cc:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Distance = int; _Tp = std::pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from ../src/tools/trees-consensus.cc:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tools/trees-consensus.cc:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator > >}; _Tp = std::pair >; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from ../src/tools/trees-consensus.cc:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from ../src/tools/trees-consensus.cc:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1672:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 std::__make_heap(__first, __middle, __comp); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tools/trees-consensus.cc:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘std::vector > > get_consensus_levels(const string&)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from ../src/tools/trees-consensus.cc:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tools/trees-consensus.cc:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [196/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/trees-consensus 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [197/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@tree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -MF 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o.d' -o 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -c ../src/tools/tree-mean-lengths.cc [198/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/tree-mean-lengths 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [199/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@mctree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -MF 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o.d' -o 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -c ../src/tools/mctree-mean-lengths.cc [200/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/mctree-mean-lengths 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [201/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@trees-to-SRQ@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -MF 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o.d' -o 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -c ../src/tools/trees-to-SRQ.cc [202/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/trees-to-SRQ 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [203/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@pickout@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -MF 'src/25a6634@@pickout@exe/tools_pickout.cc.o.d' -o 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -c ../src/tools/pickout.cc [204/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/pickout 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [205/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@cut-range@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -MF 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o.d' -o 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -c ../src/tools/cut-range.cc [206/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/cut-range 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [207/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@trees-distances@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -MF 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o.d' -o 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -c ../src/tools/trees-distances.cc [208/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/trees-distances 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [209/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-thin@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -MF 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o.d' -o 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -c ../src/tools/alignment-thin.cc [210/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignment-thin 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [211/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignments-diff@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -MF 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o.d' -o 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -c ../src/tools/alignments-diff.cc [212/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignments-diff 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [213/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@tree-tool@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -MF 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o.d' -o 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -c ../src/tools/tree-tool.cc [214/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/tree-tool 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [215/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-distances@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -MF 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o.d' -o 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -c ../src/tools/alignment-distances.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tools/alignment-distances.cc:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [216/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignment-distances 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [217/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@bali-subsample@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -MF 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o.d' -o 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -c ../src/tools/subsample.cc [218/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/bali-subsample 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [219/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' -MF 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o.d' -o 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' -c ../src/tools/alignment-draw.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tree/tree.H:31, from ../src/tools/alignment-draw.cc:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘std::vector split(const string&, char) [with T = double]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [220/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -MF 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o.d' -o 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -c ../src/tools/colors.cc [221/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/alignment-draw 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [222/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -MF 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o.d' -o 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -c ../src/tools/trees-bootstrap.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from ../src/tools/trees-bootstrap.cc:35: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from ../src/tools/trees-bootstrap.cc:35: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘double greater_than(const std::valarray&, std::valarray, double)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [223/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -MF 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o.d' -o 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -c ../src/tools/bootstrap.cc [224/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/trees-bootstrap 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [225/256] /usr/bin/arm-linux-gnueabihf-g++ -Isrc/25a6634@@draw-tree@exe -Isrc -I../src -I. -I../ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -MD -MQ 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -MF 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o.d' -o 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -c ../src/tools/draw-tree.cc In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tools/draw-tree.cc:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/tools/draw-tree.cc:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ../src/tools/draw-tree.cc:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {circular_range}; _Tp = circular_range; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘void equalize_daylight(tree_layout&, int)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘void equalize_daylight_greedy(tree_layout&, int)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function ‘bool subtrees_of_node_overlap(tree_layout&, int)’: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ../src/tools/draw-tree.cc:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘virtual double energy2::operator()(const graph_layout&, std::vector&) const’: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [226/256] /usr/bin/arm-linux-gnueabihf-g++ -o src/draw-tree 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono /usr/lib/arm-linux-gnueabihf/libcairo.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/' -Wl,-rpath-link,/<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now [227/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_e43f5aec05e37920038f7c5b2cad9de7a94c5658.dat [228/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_4f19a93bc5f72835316786e52f253c802ede1312.dat [229/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_1684e5335aa8c5444a42b1b80f6d5f54e1de1cdd.dat [230/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_294c3814b45d1fec1121588ee9fecf0aaab2a5ea.dat [231/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_139e9b36bb66eaecdf35d62ace5257e0508a8c50.dat [232/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_bb90ac209ed21c77d0947eab19146404a663b7c6.dat [233/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_f70fd0b20089dd7a4b65c7037f9d3ae2bda5da4c.dat [234/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_88cc36b7f54403973ef230777650282e9a5f0c07.dat [235/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_e3f615217f843b394b4a03fb69b6130ddc74164b.dat [236/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_16fab29506095fe3c39b8c0d57501be8912a50c7.dat [237/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_8e770737bdf6843e1a76fd100de7fafc041b88e8.dat [238/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_52d6eff7037c34a2224395ccc2a94107ba4c0465.dat [239/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_59d474de4d154b46c57b1d08a725eed915ac2335.dat [240/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_3784cad67d67e1f930dea36514006309bc431383.dat [241/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_e0b04d57aba8df03d624cba1dc24ce85e4192b1e.dat [242/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_62636e5e6eda80000901495ca27789f888419907.dat [243/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_5e5fd5a35607329ee941a598f89be294cd466e06.dat [244/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_5ee2fcd2e66b3d74a11787a5585b358bfab2b992.dat [245/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_17a2a5cbf5fc1c51b30de43ec989d948585efa2d.dat [246/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_96764ff4c6be7fe5e1ae8dc9ab61a8007d5a882a.dat [247/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_8c7308c7106b7c81637d806c5d4c8b3412c400ed.dat [248/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_6495cc875b88eeb89e7e5b6878f238847829e903.dat [249/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_c5c84de1deb358e8f80196e20dac3000fc1eeaf7.dat [250/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_8cd6b9398cef63fee883a572e04f2594c24c480b.dat [251/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_7866a6fdd906fea8769f6c83277e5de00dfd629f.dat [252/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_fece06731583262ccd2e54c0230e5e86450b8946.dat [253/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_28d55c25a5c129e39e9efb63121d2d8e0c7c54ea.dat [254/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_f73854736cc124d56cb709796dcd2c5733d6be6e.dat [255/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_d13b5da4b7d4c67157d10f56074bbd0a24af0247.dat [256/256] /usr/bin/meson --internal exe /<>/bali-phy-3.4.1+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_335128c8068c11cc481c8c56d1fa932e9711b523.dat dh_auto_test -a -O--buildsystem=meson create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem=meson dh_testroot -a -O--buildsystem=meson dh_prep -a -O--buildsystem=meson dh_auto_install -a -O--buildsystem=meson cd obj-arm-linux-gnueabihf && DESTDIR=/<>/bali-phy-3.4.1\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install [1/4] Generating git-version.h with a custom command. [1/2] Installing files. Installing subdir /<>/bali-phy-3.4.1+dfsg/modules to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/Tree.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/SModel.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/SMC.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/Range.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/Prelude.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/PopGen.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/Parameters.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/MCMC.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/IModel.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/Distributions.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/Alphabet.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/Alignment.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /<>/bali-phy-3.4.1+dfsg/modules/System/Environment.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/System Installing /<>/bali-phy-3.4.1+dfsg/modules/SModel/ReversibleMarkov.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /<>/bali-phy-3.4.1+dfsg/modules/SModel/Nucleotides.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /<>/bali-phy-3.4.1+dfsg/modules/SModel/Likelihood.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /<>/bali-phy-3.4.1+dfsg/modules/SModel/Frequency.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /<>/bali-phy-3.4.1+dfsg/modules/SModel/Doublets.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /<>/bali-phy-3.4.1+dfsg/modules/SModel/Codons.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /<>/bali-phy-3.4.1+dfsg/modules/Foreign/Vector.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Foreign Installing /<>/bali-phy-3.4.1+dfsg/modules/Data/Tuple.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /<>/bali-phy-3.4.1+dfsg/modules/Data/ReadFile.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /<>/bali-phy-3.4.1+dfsg/modules/Data/Ord.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /<>/bali-phy-3.4.1+dfsg/modules/Data/Maybe.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /<>/bali-phy-3.4.1+dfsg/modules/Data/List.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /<>/bali-phy-3.4.1+dfsg/modules/Data/JSON.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /<>/bali-phy-3.4.1+dfsg/modules/Data/Function.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /<>/bali-phy-3.4.1+dfsg/modules/Data/Bool.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /<>/bali-phy-3.4.1+dfsg/modules/Control/Monad.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Control Installing /<>/bali-phy-3.4.1+dfsg/modules/Compiler/Real.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Compiler Installing /<>/bali-phy-3.4.1+dfsg/modules/Compiler/Num.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Compiler Installing /<>/bali-phy-3.4.1+dfsg/modules/Compiler/Base.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Compiler Installing subdir /<>/bali-phy-3.4.1+dfsg/functions to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/models/x3x3.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/x3_sym.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/x3.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/x2x2.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/x2_sym.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/x2.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/wag_freq.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/wag.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/tn93_sym.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/tn93.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/sample.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/rs07_relaxed_rates.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/rs07.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/rs05.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/rna_16a.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/pam.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/mut_sel.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/multi_rate.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/multiMixtureModel.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/mixture.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/mg94k.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/mg94_ext.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/mg94.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/m8a_test.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/m8a.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/m8.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/m7.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/m3_test.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/m3.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/m2a_test.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/m2a.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/m1a.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/lg08_freq.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/lg08.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/k80.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/jtt.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/jc69.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/inv.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/hky85_sym.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/hky85.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/gy94_ext.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/gy94.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/gwF.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/gtr_sym.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/gtr.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/get_q.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/fe.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/fMutSel0.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/fMutSel.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/f81.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/f61.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/f3x4.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/f1x4.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/f.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/equ.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/empirical.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/density.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/dNdS.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/branch_site.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /<>/bali-phy-3.4.1+dfsg/functions/models/Rates/log_normal.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models/Rates Installing /<>/bali-phy-3.4.1+dfsg/functions/models/Rates/gamma.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models/Rates Installing /<>/bali-phy-3.4.1+dfsg/functions/models/Rates/free.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models/Rates Installing /<>/bali-phy-3.4.1+dfsg/functions/models/Frequencies/uniform.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models/Frequencies Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/zipWith.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/zip.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/unit_mixture.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/uniform_discretize.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/tan.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/take.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/sub.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/standard_code.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/sqrt.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/sin.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/rna.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/replicate.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/quantile.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/num_branches.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/mul.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/map.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/log.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/letters.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/letter_pairs.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/length.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/intToDouble.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/getNucleotides.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/getAminoAcids.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/getAlphabet.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/exp.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/dna.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/div.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/cos.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/codons.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/add.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/aa.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/constructors/Pair.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions/constructors Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/constructors/Nil.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions/constructors Installing /<>/bali-phy-3.4.1+dfsg/functions/functions/constructors/Cons.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions/constructors Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/uniform_int.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/uniform.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/poisson.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/normal.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/log_normal.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/log_laplace.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/log_gamma.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/laplace.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/iid.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/geometric.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/gamma.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/exponential.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/dirichlet_on.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/dirichlet.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/binomial.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/beta.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /<>/bali-phy-3.4.1+dfsg/functions/distributions/bernoulli.json to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing subdir /<>/bali-phy-3.4.1+dfsg/help to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /<>/bali-phy-3.4.1+dfsg/help/parameters.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /<>/bali-phy-3.4.1+dfsg/help/alphabets.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /<>/bali-phy-3.4.1+dfsg/help/parameters/priors.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/parameters Installing /<>/bali-phy-3.4.1+dfsg/help/commands/version.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/verbose.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/unalign.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/tree.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/test.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/subsample.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/smodel.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/set.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/seed.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/scale.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/print.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/pre-burnin.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/package-path.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/name.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/model.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/link.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/iterations.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/initial-value.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/imodel.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/enable.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/disable.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/config.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/branch-lengths.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/alphabet.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/align.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/commands/Rao-Blackwellize.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.4.1+dfsg/help/alphabets/genetic-code.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/bali-phy-3.4.1+dfsg/help/alphabets/Triplets.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/bali-phy-3.4.1+dfsg/help/alphabets/Doublets.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/bali-phy-3.4.1+dfsg/help/alphabets/Codons.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing subdir /<>/bali-phy-3.4.1+dfsg/examples to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/table1.accessions to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/paper.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/other.accessions to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/additional.accessions to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/76.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/76.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/76-muscle.ph to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/76-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/76-clustalw.ph to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/76-clustalw.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/37.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/37.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/37-muscle.ph to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/37-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/37-clustalw.ph to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/37-clustalw.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/30.ph to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/30.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/30.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/30.aln to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/30-muscle.ph to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/30-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/30-clustalw.ph to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/microbotryum/30-clustalw.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/lrRNA/mollusc12.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/lrRNA/mollusc.rna.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/lrRNA/mollusc.gb to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/lrRNA/mollusc.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/lrRNA/keep.pl to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/lrRNA/NOTES.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/ferns/orig.nex to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/ferns/orig.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/ferns/config2.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/ferns/config.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/ferns/cleaned.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/ferns/README.txt to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Miklos-2008/subtilase.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Miklos-2008/rr_receiver.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Miklos-2008/papain.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Miklos-2008/lysozyme.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Miklos-2008/legume_lectin.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Miklos-2008/lectin.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Miklos-2008/haloperoxidase.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Miklos-2008/annexin.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/ITS/ITS2-trimmed.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/ITS/ITS1-trimmed.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/ITS/5.8S.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/HIV/HIVSIV.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/HIV/chain-2005/pol.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/HIV/chain-2005/pol-common.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/HIV/chain-2005/env.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/HIV/chain-2005/env-common.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/HIV/chain-2005/env-clustal.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Globins/some.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Globins/many.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Globins/many-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Globins/globins.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Globins/few.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Globins/few-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Globins/few-clustalw.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Globins/few-clustalw.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Globins/bglobin.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Globins/10-globins.xml to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Globins/10-globins-Lunter.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Enolase/enolase-38.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Enolase/enolase-38-trimmed.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/EF-Tu/5d.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/EF-Tu/5d-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/EF-Tu/5d-clustalw.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/EF-Tu/5d-clustalw.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/EF-Tu/48b.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/EF-Tu/48b-clustalw.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/EF-Tu/48b-clustalw.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/EF-Tu/25-mafft.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/EF-Tu/12d.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/EF-Tu/12d-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/EF-Tu/12d-clustalw.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/EF-Tu/12d-clustalw.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Duplications/trp-tyr/tyr.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Duplications/trp-tyr/trp.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/5d.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/5d-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/5d-clustalw.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/5d-clustalw.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-t-coffee.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-t-coffee.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-fsa.ph to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-fsa.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-clustalw.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-clustalw.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-tcoffee.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-tcoffee.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-t-coffee.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-t-coffee.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-poy.trees to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-poy.tree to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-poy.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-poy.command to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-muscle.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-fsa.ph to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-fsa.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-clustalw.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-clustalw.dnd to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.4.1+dfsg/examples/models/ys to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /<>/bali-phy-3.4.1+dfsg/examples/models/xs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /<>/bali-phy-3.4.1+dfsg/examples/models/LinearRegression.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /<>/bali-phy-3.4.1+dfsg/examples/models/Demo5.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /<>/bali-phy-3.4.1+dfsg/examples/models/Demo4.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /<>/bali-phy-3.4.1+dfsg/examples/models/Demo3.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /<>/bali-phy-3.4.1+dfsg/examples/models/Demo2.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /<>/bali-phy-3.4.1+dfsg/examples/models/Demo1.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /<>/bali-phy-3.4.1+dfsg/examples/models/Demo.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /<>/bali-phy-3.4.1+dfsg/examples/models/CoalMine.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /<>/bali-phy-3.4.1+dfsg/examples/models/AirLine.hs to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing src/bali-phy to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/builtins/Array.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Data.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Prelude.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alphabet.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Pair.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Modifiables.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alignment.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/PopGen.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Distribution.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Range.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SModel.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/MCMC.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Vector.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Environment.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SMC.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Real.so to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/model_P to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/statreport to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/stats-select to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-gild to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-consensus to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-max to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-chop-internal to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-indices to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-info to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-cat to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-translate to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-find to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/trees-consensus to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/tree-mean-lengths to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/mctree-mean-lengths to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/trees-to-SRQ to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/pickout to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/cut-range to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/trees-distances to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-thin to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignments-diff to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/tree-tool to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-distances to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/bali-subsample to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-draw to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/trees-bootstrap to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing src/draw-tree to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing doc/bali-phy.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/model_P.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/statreport.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/stats-select.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-gild.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-consensus.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-max.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-chop-internal.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-indices.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-info.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-cat.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-translate.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-find.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-consensus.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/tree-mean-lengths.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/mctree-mean-lengths.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-to-SRQ.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/pickout.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/cut-range.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-distances.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-thin.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignments-diff.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/tree-tool.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-distances.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bali-subsample.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-draw.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-bootstrap.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/draw-tree.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bp-analyze.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bali-phy-pkg.1 to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/developer.html to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy Installing /<>/bali-phy-3.4.1+dfsg/scripts/bp-analyze to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing /<>/bali-phy-3.4.1+dfsg/scripts/bali-phy-pkg to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/bin Installing /<>/bali-phy-3.4.1+dfsg/scripts/compare-runs.R to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.4.1+dfsg/scripts/compare-runs2.R to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.4.1+dfsg/scripts/tree-plot1.R to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.4.1+dfsg/scripts/tree-plot2.R to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.4.1+dfsg/scripts/tree-plot3.R to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.4.1+dfsg/scripts/tree-plot2-3D.R to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.4.1+dfsg/scripts/tree-plot1-3D.R to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.4.1+dfsg/scripts/tree-plot3-3D.R to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.4.1+dfsg/doc/README.html to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy Installing /<>/bali-phy-3.4.1+dfsg/doc/README.xhtml to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy Installing /<>/bali-phy-3.4.1+dfsg/doc/README.pdf to /<>/bali-phy-3.4.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy dh_installdocs -a -O--buildsystem=meson dh_installchangelogs -a -O--buildsystem=meson dh_installman -a -O--buildsystem=meson dh_installinit -a -O--buildsystem=meson dh_perl -a -O--buildsystem=meson dh_link -a -O--buildsystem=meson dh_strip_nondeterminism -a -O--buildsystem=meson dh_compress -a -O--buildsystem=meson dh_fixperms -a -O--buildsystem=meson dh_missing -a -O--buildsystem=meson dh_strip -a -O--buildsystem=meson dh_makeshlibs -a -O--buildsystem=meson dh_shlibdeps -a -O--buildsystem=meson dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/draw-tree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-thin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-gild contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _Z15uniform_int_pdfiii: it's probably a plugin dpkg-shlibdeps: warning: 36 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _ZN18AminoAcidsWithStopC1Ev: it's probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-subsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol _ZN8reg_heap24get_reg_value_in_contextERii: it's probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-phy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/pickout contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-max contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZN12substitution20peel_leaf_branch_SEVERKSt6vectorIiSaIiEERK8alphabetRK7EVectorRKN5boost14dynamic_bitsetImSaImEEE: it's probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _ZNK13OperationArgs12reg_for_slotEi: it's probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _ZN11constructorC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/mctree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/statreport contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-cat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignments-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/stats-select contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-chop-internal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Real.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-find contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/model_P contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-translate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _ZNK8alphabet27get_frequencies_from_countsERKSt8valarrayIdEd: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-bootstrap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-draw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-to-SRQ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-tool contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-indices contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol _ZN13OperationArgs8allocateEO7closure: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _ZNK7EVectorcvSt6vectorIdSaIdEEEv: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/cut-range contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a -O--buildsystem=meson dh_gencontrol -a -O--buildsystem=meson dh_md5sums -a -O--buildsystem=meson dh_builddeb -a -O--buildsystem=meson dpkg-deb: building package 'bali-phy' in '../bali-phy_3.4.1+dfsg-1_armhf.deb'. dpkg-deb: building package 'bali-phy-dbgsym' in '../bali-phy-dbgsym_3.4.1+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../bali-phy_3.4.1+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-02-04T02:45:23Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-Vo2YVJ/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-bali-phy-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-Vo2YVJ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Sources [837 B] Get:5 copy:/<>/resolver-Vo2YVJ/apt_archive ./ Packages [912 B] Fetched 2712 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl liburi-perl libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl liburi-perl libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults sbuild-build-depends-lintian-dummy:armhf t1utils 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 5226 kB of archives. After this operation, 14.3 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Vo2YVJ/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.5 [19.3 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.12-1 [509 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.12-1 [862 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.5.124 [1189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5226 kB in 0s (48.6 MB/s) Selecting previously unselected package netbase. (Reading database ... 37411 files and directories currently installed.) Preparing to unpack .../00-netbase_5.5_all.deb ... Unpacking netbase (5.5) ... Selecting previously unselected package diffstat. Preparing to unpack .../01-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../02-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../03-gpgconf_2.2.12-1_amd64.deb ... Unpacking gpgconf (2.2.12-1) ... Selecting previously unselected package gpg. Preparing to unpack .../04-gpg_2.2.12-1_amd64.deb ... Unpacking gpg (2.2.12-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../05-libapt-pkg-perl_0.1.34+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.34+b1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../06-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../07-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../08-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../09-libcgi-pm-perl_4.40-1_all.deb ... Unpacking libcgi-pm-perl (4.40-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../10-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../11-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../12-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../13-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../14-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../15-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../16-libnet-ssleay-perl_1.85-2+b1_amd64.deb ... Unpacking libnet-ssleay-perl (1.85-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../17-libio-socket-ssl-perl_2.060-3_all.deb ... Unpacking libio-socket-ssl-perl (2.060-3) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../18-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../19-libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../20-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../21-libnet-dns-perl_1.19-1_all.deb ... Unpacking libnet-dns-perl (1.19-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../22-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../23-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../24-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../25-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../26-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../27-libfuture-perl_0.39-1_all.deb ... Unpacking libfuture-perl (0.39-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../28-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../29-libio-async-perl_0.72-1_all.deb ... Unpacking libio-async-perl (0.72-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../30-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../31-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../32-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) ... Selecting previously unselected package libparse-debianchangelog-perl. Preparing to unpack .../33-libparse-debianchangelog-perl_1.2.0-13_all.deb ... Unpacking libparse-debianchangelog-perl (1.2.0-13) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../34-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../35-libyaml-libyaml-perl_0.76+repack-1_amd64.deb ... Unpacking libyaml-libyaml-perl (0.76+repack-1) ... Selecting previously unselected package patchutils. Preparing to unpack .../36-patchutils_0.3.4-2_amd64.deb ... Unpacking patchutils (0.3.4-2) ... Selecting previously unselected package t1utils. Preparing to unpack .../37-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package lintian. Preparing to unpack .../38-lintian_2.5.124_all.deb ... Unpacking lintian (2.5.124) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:armhf. Preparing to unpack .../39-sbuild-build-depends-lintian-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up libapt-pkg-perl (0.1.34+b1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libnet-ip-perl (1.26-2) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up libfuture-perl (0.39-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up patchutils (0.3.4-2) ... Setting up liburi-perl (1.76-1) ... Setting up t1utils (1.41-3) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libio-async-perl (0.72-1) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up diffstat (1.62-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up netbase (5.5) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up gpgconf (2.2.12-1) ... Setting up libnet-dns-perl (1.19-1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up gpg (2.2.12-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up lintian (2.5.124) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-5) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bali-phy_3.4.1+dfsg-1_armhf.changes: ------------------------------------ Format: 1.8 Date: Tue, 22 Jan 2019 14:04:09 -0500 Source: bali-phy Binary: bali-phy bali-phy-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 3.4.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Benjamin Redelings Description: bali-phy - Bayesian Inference of Alignment and Phylogeny Changes: bali-phy (3.4.1+dfsg-1) unstable; urgency=medium . * New upstream version 3.4.1+dfsg * Update Standards-Version to 4.3.0 Checksums-Sha1: d4c8e56b30fafa6fb244a5e4dce0fee96800b112 124707560 bali-phy-dbgsym_3.4.1+dfsg-1_armhf.deb a1c931211193b6a5b7b9135a3e621608f0cfbf15 7698 bali-phy_3.4.1+dfsg-1_armhf.buildinfo 0e07b66a7ee90ae04f6bc73f0ae8d9c83dce9c07 4034616 bali-phy_3.4.1+dfsg-1_armhf.deb Checksums-Sha256: f17e01c7235def16593f761947b897e8ce47c6bbeb74bf3bbdd11aad64932a39 124707560 bali-phy-dbgsym_3.4.1+dfsg-1_armhf.deb 7b123e1e0868c5621e8064593ac71b988a7d4d283dc194ed19a0582c76ffbb16 7698 bali-phy_3.4.1+dfsg-1_armhf.buildinfo 8780248fdedc1404c8d8ccb649a8992913458782af0d34480812708c9c12dea5 4034616 bali-phy_3.4.1+dfsg-1_armhf.deb Files: bd260f02a35ae76fb9d04e8ad82a52bb 124707560 debug optional bali-phy-dbgsym_3.4.1+dfsg-1_armhf.deb b6d90e7fae687d1a64c9d2ed4fdb2f26 7698 science optional bali-phy_3.4.1+dfsg-1_armhf.buildinfo 1d5366e311c54061f08e3911e2980bb6 4034616 science optional bali-phy_3.4.1+dfsg-1_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: bali-phy Binary: bali-phy Architecture: armhf Version: 3.4.1+dfsg-1 Checksums-Md5: bd260f02a35ae76fb9d04e8ad82a52bb 124707560 bali-phy-dbgsym_3.4.1+dfsg-1_armhf.deb 1d5366e311c54061f08e3911e2980bb6 4034616 bali-phy_3.4.1+dfsg-1_armhf.deb Checksums-Sha1: d4c8e56b30fafa6fb244a5e4dce0fee96800b112 124707560 bali-phy-dbgsym_3.4.1+dfsg-1_armhf.deb 0e07b66a7ee90ae04f6bc73f0ae8d9c83dce9c07 4034616 bali-phy_3.4.1+dfsg-1_armhf.deb Checksums-Sha256: f17e01c7235def16593f761947b897e8ce47c6bbeb74bf3bbdd11aad64932a39 124707560 bali-phy-dbgsym_3.4.1+dfsg-1_armhf.deb 8780248fdedc1404c8d8ccb649a8992913458782af0d34480812708c9c12dea5 4034616 bali-phy_3.4.1+dfsg-1_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 04 Feb 2019 02:45:21 +0000 Build-Path: /<>/bali-phy-3.4.1+dfsg Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.1), base-passwd (= 3.5.45), bash (= 5.0-2), binutils (= 2.31.1-11), binutils-common (= 2.31.1-11), binutils-x86-64-linux-gnu (= 2.31.1-11), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.5), bzip2 (= 1.0.6-9), coreutils (= 8.30-1), cpp (= 4:8.2.0-2), cpp-8 (= 8.2.0-16), dash (= 0.5.10.2-5), debconf (= 1.5.70), debhelper (= 12), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.0-1), diffutils (= 1:3.6-1), dpkg (= 1.19.4), dpkg-dev (= 1.19.4), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-2), findutils (= 4.6.0+git+20190105-2), fontconfig-config (= 2.13.1-2), fonts-dejavu-core (= 2.37-1), g++ (= 4:8.2.0-2), g++-8 (= 8.2.0-16), gcc (= 4:8.2.0-2), gcc-8 (= 8.2.0-16), gcc-8-base (= 8.2.0-16), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-2), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.52-3+b1), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.2.0-16), libatomic1 (= 8.2.0-16), libattr1 (= 1:2.4.47-2+b2), libaudit-common (= 1:2.8.4-2), libaudit1 (= 1:2.8.4-2), libbinutils (= 2.31.1-11), libblkid-dev (= 2.33.1-0.1), libblkid1 (= 2.33.1-0.1), libboost-chrono-dev (= 1.67.0.1), libboost-chrono1.67-dev (= 1.67.0-12), libboost-chrono1.67.0 (= 1.67.0-12), libboost-dev (= 1.67.0.1), libboost-filesystem-dev (= 1.67.0.1), libboost-filesystem1.67-dev (= 1.67.0-12), libboost-filesystem1.67.0 (= 1.67.0-12), libboost-program-options-dev (= 1.67.0.1), libboost-program-options1.67-dev (= 1.67.0-12), libboost-program-options1.67.0 (= 1.67.0-12), libboost-random-dev (= 1.67.0.1), libboost-random1.67-dev (= 1.67.0-12), libboost-random1.67.0 (= 1.67.0-12), libboost-system-dev (= 1.67.0.1), libboost-system1.67-dev (= 1.67.0-12), libboost-system1.67.0 (= 1.67.0-12), libboost1.67-dev (= 1.67.0-12), libbsd0 (= 0.9.1-1), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-5), libc-dev-bin (= 2.28-5), libc6 (= 2.28-5), libc6-dev (= 2.28-5), libcairo-gobject2 (= 1.16.0-2), libcairo-script-interpreter2 (= 1.16.0-2), libcairo2 (= 1.16.0-2), libcairo2-dev (= 1.16.0-2), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.2.0-16), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.3), libdebconfclient0 (= 0.246), libdpkg-perl (= 1.19.4), libeigen3-dev (= 3.3.7-1), libelf1 (= 0.175-2), libexpat1 (= 2.2.6-1), libexpat1-dev (= 2.2.6-1), libfdisk1 (= 2.33.1-0.1), libffi-dev (= 3.2.1-9), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.0-1), libfontconfig1 (= 2.13.1-2), libfontconfig1-dev (= 2.13.1-2), libfreetype6 (= 2.9.1-3), libfreetype6-dev (= 2.9.1-3), libgcc-8-dev (= 8.2.0-16), libgcc1 (= 1:8.2.0-16), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-2), libgdbm6 (= 1.18.1-2), libglib2.0-0 (= 2.58.2-4), libglib2.0-bin (= 2.58.2-4), libglib2.0-data (= 2.58.2-4), libglib2.0-dev (= 2.58.2-4), libglib2.0-dev-bin (= 2.58.2-4), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 8.2.0-16), libgpg-error0 (= 1.33-3), libice-dev (= 2:1.0.9-2), libice6 (= 2:1.0.9-2), libicu63 (= 63.1-6), libisl19 (= 0.20-2), libitm1 (= 8.2.0-16), liblsan0 (= 8.2.0-16), liblua5.1-0 (= 5.1.5-8.1+b2), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), liblzo2-2 (= 2.10-0.1), libmagic-mgc (= 1:5.35-2), libmagic1 (= 1:5.35-2), libmount-dev (= 2.33.1-0.1), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpdec2 (= 2.4.2-2), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.2.0-16), libncurses6 (= 6.1+20181013-1), libncursesw6 (= 6.1+20181013-1), libpam-modules (= 1.1.8-4), libpam-modules-bin (= 1.1.8-4), libpam-runtime (= 1.1.8-4), libpam0g (= 1.1.8-4), libpcre16-3 (= 2:8.39-11), libpcre3 (= 2:8.39-11), libpcre3-dev (= 2:8.39-11), libpcre32-3 (= 2:8.39-11), libpcrecpp0v5 (= 2:8.39-11), libperl5.28 (= 5.28.1-4), libpipeline1 (= 1.5.1-1), libpixman-1-0 (= 0.36.0-1), libpixman-1-dev (= 0.36.0-1), libpng-dev (= 1.6.36-3), libpng16-16 (= 1.6.36-3), libpthread-stubs0-dev (= 0.3-4), libpython3-stdlib (= 3.7.2-1), libpython3.7-minimal (= 3.7.2-2), libpython3.7-stdlib (= 3.7.2-2), libquadmath0 (= 8.2.0-16), libreadline7 (= 7.0-5), libseccomp2 (= 2.3.3-3), libselinux1 (= 2.8-1+b1), libselinux1-dev (= 2.8-1+b1), libsepol1 (= 2.8-1), libsepol1-dev (= 2.8-1), libsigsegv2 (= 2.12-2), libsm-dev (= 2:1.2.2-1+b3), libsm6 (= 2:1.2.2-1+b3), libsmartcols1 (= 2.33.1-0.1), libsqlite3-0 (= 3.26.0+fossilbc891ac6b-2), libssl1.1 (= 1.1.1a-1), libstdc++-8-dev (= 8.2.0-16), libstdc++6 (= 8.2.0-16), libsystemd0 (= 240-5), libtinfo6 (= 6.1+20181013-1), libtool (= 2.4.6-9), libtsan0 (= 8.2.0-16), libubsan1 (= 8.2.0-16), libuchardet0 (= 0.0.6-3), libudev1 (= 240-5), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libx11-6 (= 2:1.6.7-1), libx11-data (= 2:1.6.7-1), libx11-dev (= 2:1.6.7-1), libxau-dev (= 1:1.0.8-1+b2), libxau6 (= 1:1.0.8-1+b2), libxcb-render0 (= 1.13.1-2), libxcb-render0-dev (= 1.13.1-2), libxcb-shm0 (= 1.13.1-2), libxcb-shm0-dev (= 1.13.1-2), libxcb1 (= 1.13.1-2), libxcb1-dev (= 1.13.1-2), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.3-1+b2), libxext6 (= 2:1.3.3-1+b2), libxml2 (= 2.9.4+dfsg1-7+b3), libxrender-dev (= 1:0.9.10-1), libxrender1 (= 1:0.9.10-1), libyaml-0-2 (= 0.2.1-1), linux-libc-dev (= 4.19.16-1), login (= 1:4.5-1.1), lsb-base (= 10.2018112800), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-1), mawk (= 1.3.3-17+b3), meson (= 0.49.0-2), mime-support (= 3.61), ncurses-base (= 6.1+20181013-1), ncurses-bin (= 6.1+20181013-1), ninja-build (= 1.8.2-1), nlohmann-json-dev (= 2.1.1-1.1), pandoc (= 2.2.1-3+b2), pandoc-data (= 2.2.1-3), patch (= 2.7.6-3), perl (= 5.28.1-4), perl-base (= 5.28.1-4), perl-modules-5.28 (= 5.28.1-4), pkg-config (= 0.29-6), po-debconf (= 1.0.21), python3 (= 3.7.2-1), python3-distutils (= 3.7.2-3), python3-lib2to3 (= 3.7.2-3), python3-minimal (= 3.7.2-1), python3-pkg-resources (= 40.7.1-1), python3.7 (= 3.7.2-2), python3.7-minimal (= 3.7.2-2), readline-common (= 7.0-5), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-6), tar (= 1.30+dfsg-4), ucf (= 3.0038+nmu1), util-linux (= 2.33.1-0.1), uuid-dev (= 2.33.1-0.1), x11-common (= 1:7.7+19), x11proto-core-dev (= 2018.4-4), x11proto-dev (= 2018.4-4), x11proto-xext-dev (= 2018.4-4), xorg-sgml-doctools (= 1:1.11-1), xtrans-dev (= 1.3.5-1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1), zlib1g-dev (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1548183849" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bali-phy-dbgsym_3.4.1+dfsg-1_armhf.deb -------------------------------------- new Debian package, version 2.0. size 124707560 bytes: control archive=2520 bytes. 2150 bytes, 12 lines control 4664 bytes, 44 lines md5sums Package: bali-phy-dbgsym Source: bali-phy Version: 3.4.1+dfsg-1 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 127004 Depends: bali-phy (= 3.4.1+dfsg-1) Section: debug Priority: optional Description: debug symbols 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libboost-random1.67.0, libboost-system1.67.0, libc6 (>= 2.23), libcairo2 (>= 1.4.10), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), perl:any Recommends: r-base, gnuplot Suggests: figtree, seaview Section: science Priority: optional Homepage: http://www.bali-phy.org Description: Bayesian Inference of Alignment and Phylogeny BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot. . BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. 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+------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 1119904 Build-Time: 1215 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 35 Job: bali-phy_3.4.1+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: bali-phy Package-Time: 1260 Source-Version: 3.4.1+dfsg-1 Space: 1119904 Status: successful Version: 3.4.1+dfsg-1 -------------------------------------------------------------------------------- Finished at 2019-02-04T02:45:23Z Build needed 00:21:00, 1119904k disk space