sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | bali-phy 3.5.0.1+dfsg-1 (arm64) Thu, 11 Jun 2020 17:23:11 +0000 | +==============================================================================+ Package: bali-phy Version: 3.5.0.1+dfsg-1 Source Version: 3.5.0.1+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-276e50ac-f8c0-4051-8fcf-f00c5726a35d' with '<>' I: NOTICE: Log filtering will replace 'build/bali-phy-nTteJD/resolver-F2NoVB' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-11-0806.20.pdiff [8404 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-11-1416.17.pdiff [21.5 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-11-1416.17.pdiff [21.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-11-0806.20.pdiff [7413 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-11-1416.17.pdiff [52.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-11-1416.17.pdiff [52.5 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8084 kB] Fetched 8376 kB in 2s (5272 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgnutls30 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1248 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libgnutls30 amd64 3.6.14-2 [1248 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1248 kB in 0s (56.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10322 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.14-2_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.14-2) over (3.6.14-1) ... Setting up libgnutls30:amd64 (3.6.14-2) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'bali-phy' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bali-phy.git Please use: git clone https://salsa.debian.org/med-team/bali-phy.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1106 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main bali-phy 3.5.0.1+dfsg-1 (dsc) [2241 B] Get:2 http://debian.oregonstate.edu/debian unstable/main bali-phy 3.5.0.1+dfsg-1 (tar) [1100 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main bali-phy 3.5.0.1+dfsg-1 (diff) [4312 B] Fetched 1106 kB in 0s (12.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/bali-phy-nTteJD/bali-phy-3.5.0.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bali-phy-nTteJD' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), meson (>= 0.52), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 12), meson (>= 0.52), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [487 B] Get:5 copy:/<>/apt_archive ./ Packages [576 B] Fetched 2020 B in 0s (91.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils build-essential cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig-config fonts-dejavu-core g++ g++-9 g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-base:arm64 gcc-10-cross-base gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libblkid-dev:arm64 libblkid1:arm64 libboost-chrono-dev:arm64 libboost-chrono1.71-dev:arm64 libboost-chrono1.71.0:arm64 libboost-dev:arm64 libboost-filesystem-dev:arm64 libboost-filesystem1.71-dev:arm64 libboost-filesystem1.71.0:arm64 libboost-program-options-dev:arm64 libboost-program-options1.71-dev:arm64 libboost-program-options1.71.0:arm64 libboost-random-dev:arm64 libboost-random1.71-dev:arm64 libboost-random1.71.0:arm64 libboost-system-dev:arm64 libboost-system1.71-dev:arm64 libboost-system1.71.0:arm64 libboost1.71-dev:arm64 libbsd0 libbsd0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcairo-gobject2:arm64 libcairo-script-interpreter2:arm64 libcairo2:arm64 libcairo2-dev:arm64 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libeigen3-dev libelf1 libexpat1 libexpat1:arm64 libexpat1-dev:arm64 libffi-dev:arm64 libffi7:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig-dev:arm64 libfontconfig1:arm64 libfontconfig1-dev:arm64 libfreetype-dev:arm64 libfreetype6:arm64 libfreetype6-dev:arm64 libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libglib2.0-0:arm64 libglib2.0-bin libglib2.0-data libglib2.0-dev:arm64 libglib2.0-dev-bin libgomp1:arm64 libgomp1-arm64-cross libice-dev:arm64 libice6:arm64 libicu67 libio-string-perl libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzo2-2:arm64 libmagic-mgc libmagic1 libmount-dev:arm64 libmount1:arm64 libmpdec2 libpcre16-3:arm64 libpcre2-16-0:arm64 libpcre2-32-0:arm64 libpcre2-8-0:arm64 libpcre2-dev:arm64 libpcre2-posix2:arm64 libpcre3:arm64 libpcre3-dev:arm64 libpcre32-3:arm64 libpcrecpp0v5:arm64 libperl5.30 libpipeline1 libpixman-1-0:arm64 libpixman-1-dev:arm64 libpng-dev:arm64 libpng16-16:arm64 libpthread-stubs0-dev:arm64 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib librange-v3-dev libreadline8 libselinux1:arm64 libselinux1-dev:arm64 libsepol1:arm64 libsepol1-dev:arm64 libsigsegv2 libsm-dev:arm64 libsm6:arm64 libsqlite3-0 libssl1.1 libstdc++-9-dev libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libuuid1:arm64 libx11-6:arm64 libx11-data libx11-dev:arm64 libxau-dev:arm64 libxau6:arm64 libxcb-render0:arm64 libxcb-render0-dev:arm64 libxcb-shm0:arm64 libxcb-shm0-dev:arm64 libxcb1:arm64 libxcb1-dev:arm64 libxdmcp-dev:arm64 libxdmcp6:arm64 libxext-dev:arm64 libxext6:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxrender-dev:arm64 libxrender1:arm64 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db meson mime-support ninja-build nlohmann-json3-dev pandoc pandoc-data perl perl-modules-5.30 pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.8 python3.8-minimal readline-common sensible-utils ucf uuid-dev:arm64 x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:arm64 libboost1.71-doc:arm64 libboost-atomic1.71-dev:arm64 libboost-container1.71-dev:arm64 libboost-context1.71-dev:arm64 libboost-contract1.71-dev:arm64 libboost-coroutine1.71-dev:arm64 libboost-date-time1.71-dev:arm64 libboost-exception1.71-dev:arm64 libboost-fiber1.71-dev:arm64 libboost-graph1.71-dev:arm64 libboost-graph-parallel1.71-dev:arm64 libboost-iostreams1.71-dev:arm64 libboost-locale1.71-dev:arm64 libboost-log1.71-dev:arm64 libboost-math1.71-dev:arm64 libboost-mpi1.71-dev:arm64 libboost-mpi-python1.71-dev:arm64 libboost-numpy1.71-dev:arm64 libboost-python1.71-dev:arm64 libboost-regex1.71-dev:arm64 libboost-serialization1.71-dev:arm64 libboost-stacktrace1.71-dev:arm64 libboost-test1.71-dev:arm64 libboost-thread1.71-dev:arm64 libboost-timer1.71-dev:arm64 libboost-type-erasure1.71-dev:arm64 libboost-wave1.71-dev:arm64 libboost1.71-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 glibc-doc manpages-dev:arm64 libcairo2-doc:arm64 gnupg | gnupg2 git bzr libeigen3-doc libmpfrc++-dev freetype2-doc:arm64 libgirepository1.0-dev:arm64 libglib2.0-doc:arm64 libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libice-doc:arm64 libsm-doc:arm64 libstdc++-9-doc libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc:arm64 libxcb-doc:arm64 libxext-doc:arm64 libyaml-shell-perl m4-doc apparmor less www-browser texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc nodejs php python ruby r-base-core libjs-mathjax node-katex perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support readline-doc Recommended packages: gnupg | gnupg2 libalgorithm-merge-perl curl | wget | lynx libidn2-0:arm64 libfile-fcntllock-perl libarchive-cpio-perl shared-mime-info xdg-user-dirs shared-mime-info:arm64 xdg-user-dirs:arm64 libpng-tools:arm64 librange-v3-doc libltdl-dev uuid-runtime:arm64 libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils build-essential cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig-config fonts-dejavu-core g++ g++-9 g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-base:arm64 gcc-10-cross-base gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libblkid-dev:arm64 libblkid1:arm64 libboost-chrono-dev:arm64 libboost-chrono1.71-dev:arm64 libboost-chrono1.71.0:arm64 libboost-dev:arm64 libboost-filesystem-dev:arm64 libboost-filesystem1.71-dev:arm64 libboost-filesystem1.71.0:arm64 libboost-program-options-dev:arm64 libboost-program-options1.71-dev:arm64 libboost-program-options1.71.0:arm64 libboost-random-dev:arm64 libboost-random1.71-dev:arm64 libboost-random1.71.0:arm64 libboost-system-dev:arm64 libboost-system1.71-dev:arm64 libboost-system1.71.0:arm64 libboost1.71-dev:arm64 libbsd0 libbsd0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcairo-gobject2:arm64 libcairo-script-interpreter2:arm64 libcairo2:arm64 libcairo2-dev:arm64 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libeigen3-dev libelf1 libexpat1 libexpat1:arm64 libexpat1-dev:arm64 libffi-dev:arm64 libffi7:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig-dev:arm64 libfontconfig1:arm64 libfontconfig1-dev:arm64 libfreetype-dev:arm64 libfreetype6:arm64 libfreetype6-dev:arm64 libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libglib2.0-0:arm64 libglib2.0-bin libglib2.0-data libglib2.0-dev:arm64 libglib2.0-dev-bin libgomp1:arm64 libgomp1-arm64-cross libice-dev:arm64 libice6:arm64 libicu67 libio-string-perl libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzo2-2:arm64 libmagic-mgc libmagic1 libmount-dev:arm64 libmount1:arm64 libmpdec2 libpcre16-3:arm64 libpcre2-16-0:arm64 libpcre2-32-0:arm64 libpcre2-8-0:arm64 libpcre2-dev:arm64 libpcre2-posix2:arm64 libpcre3:arm64 libpcre3-dev:arm64 libpcre32-3:arm64 libpcrecpp0v5:arm64 libperl5.30 libpipeline1 libpixman-1-0:arm64 libpixman-1-dev:arm64 libpng-dev:arm64 libpng16-16:arm64 libpthread-stubs0-dev:arm64 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib librange-v3-dev libreadline8 libselinux1:arm64 libselinux1-dev:arm64 libsepol1:arm64 libsepol1-dev:arm64 libsigsegv2 libsm-dev:arm64 libsm6:arm64 libsqlite3-0 libssl1.1 libstdc++-9-dev libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libuuid1:arm64 libx11-6:arm64 libx11-data libx11-dev:arm64 libxau-dev:arm64 libxau6:arm64 libxcb-render0:arm64 libxcb-render0-dev:arm64 libxcb-shm0:arm64 libxcb-shm0-dev:arm64 libxcb1:arm64 libxcb1-dev:arm64 libxdmcp-dev:arm64 libxdmcp6:arm64 libxext-dev:arm64 libxext6:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxrender-dev:arm64 libxrender1:arm64 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db meson mime-support ninja-build nlohmann-json3-dev pandoc pandoc-data perl perl-modules-5.30 pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.8 python3.8-minimal readline-common sbuild-build-depends-main-dummy:arm64 sensible-utils ucf uuid-dev:arm64 x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 223 newly installed, 0 to remove and 0 not upgraded. Need to get 147 MB of archives. After this operation, 797 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1004 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.2-1 [1315 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.8-minimal amd64 3.8.3-1 [760 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 python3.8-minimal amd64 3.8.3-1 [1943 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.8.2-3 [37.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 mime-support all 3.64 [37.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec2 amd64 2.4.2-3 [84.1 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.32.2-2 [752 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.8-stdlib amd64 3.8.3-1 [1668 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 python3.8 amd64 3.8.3-1 [416 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.8.2-3 [20.8 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.8.2-3 [63.7 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-10-base arm64 10.1.0-3 [197 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.3.0-13 [197 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0042 [73.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.34-8 [2790 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-8 [2631 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-13 [1701 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-13 [10.7 MB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.19.7 [1414 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.19.7 [1773 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.3.0-13cross1 [197 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.3.0-13cross1 [6548 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.3.0-13cross1 [193 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.1.0-3cross1 [194 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.30-2cross1 [1246 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 10.1.0-3cross1 [34.7 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 10.1.0-3cross1 [89.0 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 10.1.0-3cross1 [23.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 10.1.0-3cross1 [9252 B] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.3.0-13cross1 [347 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 10.1.0-3cross1 [125 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 10.1.0-3cross1 [285 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 10.1.0-3cross1 [411 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 10.1.0-3cross1 [122 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.3.0-13cross1 [891 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.3.0-13cross1 [6934 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1460 B] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.4.19-1cross1 [1153 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.30-2cross1 [2265 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.3.0-13cross1 [1640 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.3.0-13cross1 [7134 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1180 B] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-2 [8610 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5+b1 [710 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.1 [187 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.1-1 [14.9 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.3-1 [1341 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.1 [1012 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 10.1.0-3 [34.7 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.16-1 [90.4 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.30-8 [2468 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.3.0-13 [354 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 10.1.0-3 [9456 B] Get:111 http://debian.oregonstate.edu/debian unstable/main arm64 libblkid1 arm64 2.35.2-2 [185 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.6.14-2 [1094 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.16-1 [111 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.30-8 [2281 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main arm64 libuuid1 arm64 2.35.2-2 [80.5 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main arm64 uuid-dev arm64 2.35.2-2 [96.6 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main arm64 libblkid-dev arm64 2.35.2-2 [227 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 10.1.0-3 [91.0 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 10.1.0-3 [23.8 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 10.1.0-3 [126 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 10.1.0-3 [293 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 10.1.0-3 [450 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 10.1.0-3 [123 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.3.0-13 [887 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.3.0-13 [1659 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main arm64 libboost1.71-dev arm64 1.71.0-6+b2 [9097 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-chrono1.71.0 arm64 1.71.0-6+b2 [242 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-chrono1.71-dev arm64 1.71.0-6+b2 [252 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-chrono-dev arm64 1.71.0.3 [4752 B] Get:130 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-dev arm64 1.71.0.3 [4340 B] Get:131 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-filesystem1.71.0 arm64 1.71.0-6+b2 [264 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-system1.71.0 arm64 1.71.0-6+b2 [231 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-system1.71-dev arm64 1.71.0-6+b2 [232 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-filesystem1.71-dev arm64 1.71.0-6+b2 [284 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-filesystem-dev arm64 1.71.0.3 [4160 B] Get:136 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-program-options1.71.0 arm64 1.71.0-6+b2 [351 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-program-options1.71-dev arm64 1.71.0-6+b2 [399 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-program-options-dev arm64 1.71.0.3 [4132 B] Get:139 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-random1.71.0 arm64 1.71.0-6+b2 [241 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-random1.71-dev arm64 1.71.0-6+b2 [245 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-random-dev arm64 1.71.0.3 [4124 B] Get:142 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-system-dev arm64 1.71.0.3 [4264 B] Get:143 http://debian.oregonstate.edu/debian unstable/main arm64 libbsd0 arm64 0.10.0-1 [105 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main arm64 libexpat1 arm64 2.2.9-1 [81.6 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-2 [87.9 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main arm64 libpng16-16 arm64 1.6.37-2 [287 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main arm64 libfreetype6 arm64 2.10.1-2 [367 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main arm64 libfontconfig1 arm64 2.13.1-4.2 [344 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main arm64 libpixman-1-0 arm64 0.36.0-1 [436 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main arm64 libxau6 arm64 1:1.0.8-1+b2 [19.3 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb1 arm64 1.14-2 [137 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.9-2 [298 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main arm64 libx11-6 arm64 2:1.6.9-2+b1 [735 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-render0 arm64 1.14-2 [111 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-shm0 arm64 1.14-2 [101 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main arm64 libxext6 arm64 2:1.3.3-1+b2 [48.6 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main arm64 libcairo2 arm64 1.16.0-4 [644 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main arm64 libffi7 arm64 3.3-4 [20.5 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre2-8-0 arm64 10.34-7 [208 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main arm64 libselinux1 arm64 3.0-1+b3 [83.5 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main arm64 libmount1 arm64 2.35.2-2 [199 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre3 arm64 2:8.39-12+b1 [317 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main arm64 libglib2.0-0 arm64 2.64.3-1 [1258 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main arm64 libcairo-gobject2 arm64 1.16.0-4 [124 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main arm64 libcairo-script-interpreter2 arm64 1.16.0-4 [157 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main arm64 libexpat1-dev arm64 2.2.9-1 [124 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main arm64 libpng-dev arm64 1.6.37-2 [291 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main arm64 libfreetype-dev arm64 2.10.1-2 [527 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main arm64 libfreetype6-dev arm64 2.10.1-2 [63.8 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main arm64 libfontconfig-dev arm64 2.13.1-4.2 [367 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main arm64 libfontconfig1-dev arm64 2.13.1-4.2 [238 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2020.1-1 [594 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2020.1-1 [3404 B] Get:180 http://debian.oregonstate.edu/debian unstable/main arm64 libxau-dev arm64 1:1.0.8-1+b2 [22.8 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main arm64 libxdmcp-dev arm64 1:1.1.2-3 [41.2 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main arm64 libpthread-stubs0-dev arm64 0.4-1 [5336 B] Get:184 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb1-dev arm64 1.14-2 [177 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main arm64 libx11-dev arm64 2:1.6.9-2+b1 [818 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main arm64 libxrender-dev arm64 1:0.9.10-1 [38.8 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2020.1-1 [3404 B] Get:188 http://debian.oregonstate.edu/debian unstable/main arm64 libxext-dev arm64 2:1.3.3-1+b2 [104 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+20 [252 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main arm64 libice6 arm64 2:1.0.9-2 [52.0 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main arm64 libice-dev arm64 2:1.0.9-2 [62.0 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main arm64 libsm-dev arm64 2:1.2.3-1 [37.4 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main arm64 libpixman-1-dev arm64 0.36.0-1 [453 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-render0-dev arm64 1.14-2 [115 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-shm0-dev arm64 1.14-2 [103 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main arm64 libffi-dev arm64 3.3-4 [53.2 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-data all 2.64.3-1 [1152 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-bin amd64 2.64.3-1 [136 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main amd64 python3-lib2to3 all 3.8.3-2 [76.8 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main amd64 python3-distutils all 3.8.3-2 [143 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-dev-bin amd64 2.64.3-1 [172 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main arm64 libsepol1 arm64 3.0-1 [242 kB] Get:204 http://debian.oregonstate.edu/debian unstable/main arm64 libsepol1-dev arm64 3.0-1 [328 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre2-16-0 arm64 10.34-7 [195 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre2-32-0 arm64 10.34-7 [185 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre2-posix2 arm64 10.34-7 [45.1 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre2-dev arm64 10.34-7 [635 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main arm64 libselinux1-dev arm64 3.0-1+b3 [172 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main arm64 libmount-dev arm64 2.35.2-2 [240 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre16-3 arm64 2:8.39-12+b1 [236 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre32-3 arm64 2:8.39-12+b1 [230 kB] Get:213 http://debian.oregonstate.edu/debian unstable/main arm64 libpcrecpp0v5 arm64 2:8.39-12+b1 [152 kB] Get:214 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre3-dev arm64 2:8.39-12+b1 [579 kB] Get:215 http://debian.oregonstate.edu/debian unstable/main arm64 libglib2.0-dev arm64 2.64.3-1 [1580 kB] Get:216 http://debian.oregonstate.edu/debian unstable/main arm64 libcairo2-dev arm64 1.16.0-4 [706 kB] Get:217 http://debian.oregonstate.edu/debian unstable/main amd64 libeigen3-dev all 3.3.7-2 [850 kB] Get:218 http://debian.oregonstate.edu/debian unstable/main amd64 librange-v3-dev all 0.10.0-1 [219 kB] Get:219 http://debian.oregonstate.edu/debian unstable/main amd64 ninja-build amd64 1.10.0-1 [107 kB] Get:220 http://debian.oregonstate.edu/debian unstable/main amd64 meson all 0.54.2-1 [400 kB] Get:221 http://debian.oregonstate.edu/debian unstable/main amd64 nlohmann-json3-dev all 3.7.3-1 [751 kB] Get:222 http://debian.oregonstate.edu/debian unstable/main amd64 pandoc-data all 2.5-3 [349 kB] Get:223 http://debian.oregonstate.edu/debian unstable/main amd64 pandoc amd64 2.5-3+b1 [15.7 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 147 MB in 2s (79.4 MB/s) Selecting previously unselected package libbsd0:amd64. 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Setting up linux-libc-dev:arm64 (5.6.14-2) ... Setting up gettext-base (0.19.8.1-10) ... Setting up binutils-aarch64-linux-gnu (2.34-8) ... Setting up cpp-9-aarch64-linux-gnu (9.3.0-13cross1) ... Setting up file (1:5.38-5) ... Setting up libpthread-stubs0-dev:arm64 (0.4-1) ... Setting up ninja-build (1.10.0-1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up gcc-10-base:arm64 (10.1.0-3) ... Setting up cpp-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up autotools-dev (20180224.1) ... Setting up libglib2.0-data (2.64.3-1) ... Setting up cross-config (2.6.15-3) ... Setting up libx11-data (2:1.6.9-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libc6-arm64-cross (2.30-2cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up gcc-9-cross-base (9.3.0-13cross1) ... Setting up gcc-10-cross-base (10.1.0-3cross1) ... Setting up linux-libc-dev-arm64-cross (5.4.19-1cross1) ... Setting up librange-v3-dev (0.10.0-1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.30-8) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libboost-system1.71.0:arm64 (1.71.0-6+b2) ... Setting up libmpdec2:amd64 (2.4.2-3) ... Setting up nlohmann-json3-dev (3.7.3-1) ... Setting up pandoc-data (2.5-3) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (8.0-4) ... Setting up libxml2:amd64 (2.9.10+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:arm64 (9.3.0-13) ... Setting up libgcc-s1-arm64-cross (10.1.0-3cross1) ... Setting up libatomic1-arm64-cross (10.1.0-3cross1) ... Setting up x11proto-dev (2020.1-1) ... Setting up liblsan0-arm64-cross (10.1.0-3cross1) ... Setting up libgomp1-arm64-cross (10.1.0-3cross1) ... 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Setting up x11proto-xext-dev (2020.1-1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up libpython3.8-stdlib:amd64 (3.8.3-1) ... Setting up python3.8 (3.8.3-1) ... Setting up libpython3-stdlib:amd64 (3.8.2-3) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libubsan1-arm64-cross (10.1.0-3cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libdebhelper-perl (13.1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up python3 (3.8.2-3) ... Setting up libgcc-9-dev-arm64-cross (9.3.0-13cross1) ... Setting up man-db (2.9.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.19.7) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-9-aarch64-linux-gnu (9.3.0-13cross1) ... Setting up pkg-config (0.29.2-1) ... Setting up build-essential (12.8) ... Setting up libstdc++-9-dev-arm64-cross (9.3.0-13cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up python3-lib2to3 (3.8.3-2) ... Setting up python3-distutils (3.8.3-2) ... Setting up libfile-stripnondeterminism-perl (1.8.1-1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up libglib2.0-dev-bin (2.64.3-1) ... Setting up po-debconf (1.0.21) ... Setting up meson (0.54.2-1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libeigen3-dev (3.3.7-2) ... Setting up g++-9-aarch64-linux-gnu (9.3.0-13cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.8.1-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.8) ... Setting up libcrypt1:arm64 (1:4.4.16-1) ... Setting up libgcc-s1:arm64 (10.1.0-3) ... Setting up dh-autoreconf (19) ... Setting up libc6:arm64 (2.30-8) ... Setting up libsepol1:arm64 (3.0-1) ... Setting up libcrypt-dev:arm64 (1:4.4.16-1) ... Setting up libc6-dev:arm64 (2.30-8) ... Setting up libbsd0:arm64 (0.10.0-1) ... Setting up libblkid1:arm64 (2.35.2-2) ... Setting up libstdc++6:arm64 (10.1.0-3) ... Setting up liblsan0:arm64 (10.1.0-3) ... Setting up libitm1:arm64 (10.1.0-3) ... Setting up libtsan0:arm64 (10.1.0-3) ... Setting up libboost-program-options1.71.0:arm64 (1.71.0-6+b2) ... Setting up libexpat1:arm64 (2.2.9-1) ... Setting up libpixman-1-0:arm64 (0.36.0-1) ... Setting up libice6:arm64 (2:1.0.9-2) ... Setting up libxau6:arm64 (1:1.0.8-1+b2) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libxcb1:arm64 (1.14-2) ... 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Setting up libxcb-render0-dev:arm64 (1.14-2) ... Setting up libpcre2-posix2:arm64 (10.34-7) ... Setting up libxext-dev:arm64 (2:1.3.3-1+b2) ... Setting up libmount1:arm64 (2.35.2-2) ... Setting up libfontconfig1:arm64 (2.13.1-4.2) ... Setting up libxrender-dev:arm64 (1:0.9.10-1) ... Setting up libblkid-dev:arm64 (2.35.2-2) ... Setting up libstdc++-9-dev:arm64 (9.3.0-13) ... Setting up libpcre2-dev:arm64 (10.34-7) ... Setting up libselinux1-dev:arm64 (3.0-1+b3) ... Setting up libglib2.0-0:arm64 (2.64.3-1) ... /var/lib/dpkg/info/libglib2.0-0:arm64.postinst: 47: /usr/lib/aarch64-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:arm64.postinst: 50: /usr/lib/aarch64-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up libboost1.71-dev:arm64 (1.71.0-6+b2) ... Setting up libcairo2:arm64 (1.16.0-4) ... Setting up libfreetype-dev:arm64 (2.10.1-2) ... Setting up libboost-system1.71-dev:arm64 (1.71.0-6+b2) ... Setting up libboost-random1.71-dev:arm64 (1.71.0-6+b2) ... Setting up libboost-filesystem1.71-dev:arm64 (1.71.0-6+b2) ... Setting up libcairo-gobject2:arm64 (1.16.0-4) ... Setting up libboost-dev:arm64 (1.71.0.3) ... Setting up libmount-dev:arm64 (2.35.2-2) ... Setting up libboost-filesystem-dev:arm64 (1.71.0.3) ... Setting up libcairo-script-interpreter2:arm64 (1.16.0-4) ... Setting up libboost-program-options1.71-dev:arm64 (1.71.0-6+b2) ... Setting up libboost-chrono1.71-dev:arm64 (1.71.0-6+b2) ... Setting up libboost-chrono-dev:arm64 (1.71.0.3) ... Setting up libboost-system-dev:arm64 (1.71.0.3) ... Setting up libboost-random-dev:arm64 (1.71.0.3) ... Setting up libfreetype6-dev:arm64 (2.10.1-2) ... Setting up libglib2.0-dev:arm64 (2.64.3-1) ... Setting up libboost-program-options-dev:arm64 (1.71.0.3) ... Setting up libfontconfig-dev:arm64 (2.13.1-4.2) ... Setting up libcairo2-dev:arm64 (1.16.0-4) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Setting up libfontconfig1-dev:arm64 (2.13.1-4.2) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2 (2020-04-29) amd64 (x86_64) Toolchain package versions: binutils_2.34-8 dpkg-dev_1.19.7 g++-9_9.3.0-13 gcc-9_9.3.0-13 libc6-dev_2.30-8 libstdc++-9-dev_9.3.0-13 libstdc++-9-dev-arm64-cross_9.3.0-13cross1 libstdc++6_10.1.0-3 libstdc++6-arm64-cross_10.1.0-3cross1 linux-libc-dev_5.6.14-2 Package versions: adduser_3.118 apt_2.1.6 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8 binutils-aarch64-linux-gnu_2.34-8 binutils-common_2.34-8 binutils-x86-64-linux-gnu_2.34-8 bsdmainutils_11.1.2+b1 bsdutils_1:2.35.2-2 build-essential_12.8 bzip2_1.0.8-3 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-4 cpp-9_9.3.0-13 cpp-9-aarch64-linux-gnu_9.3.0-13cross1 cpp-aarch64-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debian-archive-keyring_2019.1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.2-2 file_1:5.38-5 findutils_4.7.0-1 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:9.2.1-3.1 g++-9_9.3.0-13 g++-9-aarch64-linux-gnu_9.3.0-13cross1 g++-aarch64-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10.1.0-3 gcc-10-cross-base_10.1.0-3cross1 gcc-8-base_8.4.0-4 gcc-9_9.3.0-13 gcc-9-aarch64-linux-gnu_9.3.0-13cross1 gcc-9-aarch64-linux-gnu-base_9.3.0-13cross1 gcc-9-base_9.3.0-13 gcc-9-cross-base_9.3.0-13cross1 gcc-aarch64-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.6 libarchive-zip-perl_1.68-1 libasan5_9.3.0-13 libasan5-arm64-cross_9.3.0-13cross1 libatomic1_10.1.0-3 libatomic1-arm64-cross_10.1.0-3cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.34-8 libblkid-dev_2.35.2-2 libblkid1_2.35.2-2 libboost-chrono-dev_1.71.0.3 libboost-chrono1.71-dev_1.71.0-6+b2 libboost-chrono1.71.0_1.71.0-6+b2 libboost-dev_1.71.0.3 libboost-filesystem-dev_1.71.0.3 libboost-filesystem1.71-dev_1.71.0-6+b2 libboost-filesystem1.71.0_1.71.0-6+b2 libboost-program-options-dev_1.71.0.3 libboost-program-options1.71-dev_1.71.0-6+b2 libboost-program-options1.71.0_1.71.0-6+b2 libboost-random-dev_1.71.0.3 libboost-random1.71-dev_1.71.0-6+b2 libboost-random1.71.0_1.71.0-6+b2 libboost-system-dev_1.71.0.3 libboost-system1.71-dev_1.71.0-6+b2 libboost-system1.71.0_1.71.0-6+b2 libboost1.71-dev_1.71.0-6+b2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-3 libc-bin_2.30-8 libc-dev-bin_2.30-8 libc6_2.30-8 libc6-arm64-cross_2.30-2cross1 libc6-dev_2.30-8 libc6-dev-arm64-cross_2.30-2cross1 libcairo-gobject2_1.16.0-4 libcairo-script-interpreter2_1.16.0-4 libcairo2_1.16.0-4 libcairo2-dev_1.16.0-4 libcap-ng0_0.7.9-2.2 libcc1-0_10.1.0-3 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-8 libctf0_2.34-8 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libeigen3-dev_3.3.7-2 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.2-2 libffi-dev_3.3-4 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.8.1-1 libfile-which-perl_1.23-1 libfontconfig-dev_2.13.1-4.2 libfontconfig1_2.13.1-4.2 libfontconfig1-dev_2.13.1-4.2 libfreetype-dev_2.10.1-2 libfreetype6_2.10.1-2 libfreetype6-dev_2.10.1-2 libgcc-9-dev_9.3.0-13 libgcc-9-dev-arm64-cross_9.3.0-13cross1 libgcc-s1_10.1.0-3 libgcc-s1-arm64-cross_10.1.0-3cross1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.3-1 libglib2.0-bin_2.64.3-1 libglib2.0-data_2.64.3-1 libglib2.0-dev_2.64.3-1 libglib2.0-dev-bin_2.64.3-1 libgmp10_2:6.2.0+dfsg-5 libgnutls30_3.6.14-2 libgomp1_10.1.0-3 libgomp1-arm64-cross_10.1.0-3cross1 libgpg-error0_1.38-1 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu67_67.1-2 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.1.0-3 libitm1-arm64-cross_10.1.0-3cross1 liblocale-gettext-perl_1.07-4 liblsan0_10.1.0-3 liblsan0-arm64-cross_10.1.0-3cross1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 liblzo2-2_2.10-2 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount-dev_2.35.2-2 libmount1_2.35.2-2 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libmpx2_8.4.0-4 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre16-3_2:8.39-12+b1 libpcre2-16-0_10.34-7 libpcre2-32-0_10.34-7 libpcre2-8-0_10.34-7 libpcre2-dev_10.34-7 libpcre2-posix2_10.34-7 libpcre3_2:8.39-12+b1 libpcre3-dev_2:8.39-12+b1 libpcre32-3_2:8.39-12+b1 libpcrecpp0v5_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libpixman-1-0_0.36.0-1 libpixman-1-dev_0.36.0-1 libpng-dev_1.6.37-2 libpng16-16_1.6.37-2 libpthread-stubs0-dev_0.4-1 libpython3-stdlib_3.8.2-3 libpython3.8-minimal_3.8.3-1 libpython3.8-stdlib_3.8.3-1 libquadmath0_10.1.0-3 librange-v3-dev_0.10.0-1 libreadline8_8.0-4 libseccomp2_2.4.3-1+b1 libselinux1_3.0-1+b3 libselinux1-dev_3.0-1+b3 libsemanage-common_3.0-1 libsemanage1_3.0-1+b3 libsepol1_3.0-1 libsepol1-dev_3.0-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.35.2-2 libsqlite3-0_3.32.2-2 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-13 libstdc++-9-dev-arm64-cross_9.3.0-13cross1 libstdc++6_10.1.0-3 libstdc++6-arm64-cross_10.1.0-3cross1 libsub-override-perl_0.09-2 libsystemd0_245.6-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.1.0-3 libtsan0-arm64-cross_10.1.0-3cross1 libubsan1_10.1.0-3 libubsan1-arm64-cross_10.1.0-3cross1 libuchardet0_0.0.7-1 libudev1_245.6-1 libunistring2_0.9.10-4 libuuid1_2.35.2-2 libx11-6_2:1.6.9-2+b1 libx11-data_2:1.6.9-2 libx11-dev_2:1.6.9-2+b1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-render0_1.14-2 libxcb-render0-dev_1.14-2 libxcb-shm0_1.14-2 libxcb-shm0-dev_1.14-2 libxcb1_1.14-2 libxcb1-dev_1.14-2 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5+b1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-2 linux-libc-dev_5.6.14-2 linux-libc-dev-arm64-cross_5.4.19-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-3 man-db_2.9.2-1 mawk_1.3.4.20200120-2 meson_0.54.2-1 mime-support_3.64 mount_2.35.2-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 ninja-build_1.10.0-1 nlohmann-json3-dev_3.7.3-1 pandoc_2.5-3+b1 pandoc-data_2.5-3 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 pkg-config_0.29.2-1 po-debconf_1.0.21 python3_3.8.2-3 python3-distutils_3.8.3-2 python3-lib2to3_3.8.3-2 python3-minimal_3.8.2-3 python3.8_3.8.3-1 python3.8-minimal_3.8.3-1 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0042 util-linux_2.35.2-2 uuid-dev_2.35.2-2 x11-common_1:7.7+20 x11proto-core-dev_2020.1-1 x11proto-dev_2020.1-1 x11proto-xext-dev_2020.1-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.4.0-1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bali-phy Binary: bali-phy Architecture: any Version: 3.5.0.1+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Benjamin Redelings Homepage: http://www.bali-phy.org Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/bali-phy Vcs-Git: https://salsa.debian.org/med-team/bali-phy.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), meson (>= 0.52), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev Package-List: bali-phy deb science optional arch=any Checksums-Sha1: 27f0886841f25f89e53620ec35426baf14e45d63 1099904 bali-phy_3.5.0.1+dfsg.orig.tar.xz f1ee1b72265aca6aa96dc811d68e2d20a9d30679 4312 bali-phy_3.5.0.1+dfsg-1.debian.tar.xz Checksums-Sha256: 55736e810189f3cd8ad4faab9a7b3408ceb875915d9b1ef6f7563ced0741a876 1099904 bali-phy_3.5.0.1+dfsg.orig.tar.xz 302fd7a0db619c4cd645fcd2d6777288c67832318bd1e11aab4df36077247ee3 4312 bali-phy_3.5.0.1+dfsg-1.debian.tar.xz Files: 88b913dc27ee0ede5ed2329565b6cac5 1099904 bali-phy_3.5.0.1+dfsg.orig.tar.xz 68bc2e9e614c837760589933b8d3148a 4312 bali-phy_3.5.0.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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10:05:00 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bali-phy_3.5.0.1+dfsg-1.dsc dpkg-source: info: extracting bali-phy in /<> dpkg-source: info: unpacking bali-phy_3.5.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking bali-phy_3.5.0.1+dfsg-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-276e50ac-f8c0-4051-8fcf-f00c5726a35d SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package bali-phy dpkg-buildpackage: info: source version 3.5.0.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Benjamin Redelings dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules build-arch dh build-arch --buildsystem=meson dh_update_autotools_config -a -O--buildsystem=meson dh_autoreconf -a -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -Dextra-tools=false --buildtype=release cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu --cross-file /<>/bali-phy-3.5.0.1\+dfsg/debian/.debhelper/generated/_source/meson-cross-file.conf -Dextra-tools=false --buildtype=release The Meson build system Version: 0.54.2 Source dir: /<> Build dir: /<>/obj-aarch64-linux-gnu Build type: cross build Project name: bali-phy Project version: 3.5 C compiler for the build machine: cc (gcc 9.3.0 "cc (Debian 9.3.0-13) 9.3.0") C linker for the build machine: cc ld.bfd 2.34 C++ compiler for the build machine: c++ (gcc 9.3.0 "c++ (Debian 9.3.0-13) 9.3.0") C++ linker for the build machine: c++ ld.bfd 2.34 Using 'CFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' C compiler for the host machine: /usr/bin/aarch64-linux-gnu-gcc (gcc 9.3.0 "aarch64-linux-gnu-gcc (Debian 9.3.0-13) 9.3.0") C linker for the host machine: /usr/bin/aarch64-linux-gnu-gcc ld.bfd 2.34 Using 'CXXFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' C++ compiler for the host machine: /usr/bin/aarch64-linux-gnu-g++ (gcc 9.3.0 "aarch64-linux-gnu-g++ (Debian 9.3.0-13) 9.3.0") C++ linker for the host machine: /usr/bin/aarch64-linux-gnu-g++ ld.bfd 2.34 Build machine cpu family: x86_64 Build machine cpu: x86_64 Host machine cpu family: aarch64 Host machine cpu: arm64 Target machine cpu family: aarch64 Target machine cpu: arm64 Has header "sys/resource.h" : YES Has header "fenv.h" : YES Checking for function "log2" : YES Checking for function "feenableexcept" : YES Configuring config.h using configuration Compiler for C++ supports arguments -Wno-sign-compare -Wsign-compare: YES Compiler for C++ supports arguments -Wno-maybe-uninitialized -Wmaybe-uninitialized: YES Compiler for C++ supports arguments -Woverloaded-virtual: YES Compiler for C++ supports arguments -Wstrict-aliasing: YES Compiler for C++ supports arguments -Wno-unknown-pragmas -Wunknown-pragmas: YES Compiler for C++ supports arguments -fdiagnostics-show-template-tree: YES Compiler for C++ supports arguments -funroll-loops: YES Compiler for C++ supports arguments -fno-math-errno: YES Compiler for C++ supports arguments -fno-signed-zeros: YES Found pkg-config: /usr/bin/aarch64-linux-gnu-pkg-config (0.29.2) Run-time dependency cairo found: YES 1.16.0 Run-time dependency Boost (found: chrono, filesystem, program_options, random, system) found: YES 1.71.0 (/usr) Run-time dependency eigen3 found: YES 3.3.7 Has header "nlohmann/json.hpp" : YES Library dl found: YES Has header "range/v3/view/take.hpp" : YES Library m found: YES Program pandoc found: YES (/usr/bin/pandoc) Program /<>/tests/run-tests.py found: YES (/<>/tests/run-tests.py) Build targets in project: 86 Found ninja-1.10.0 at /usr/bin/ninja make[1]: Leaving directory '/<>' dh_auto_build -a -O--buildsystem=meson cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 ninja -j1 -v [1/292] /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /<>/src @git_message@ '(.*)' /<>/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)' [2/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/string_pred.cc.o' -MF 'src/util/ed6d25d@@util@sta/string_pred.cc.o.d' -o 'src/util/ed6d25d@@util@sta/string_pred.cc.o' -c ../src/util/string/pred.cc [3/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/string_sanitize.cc.o' -MF 'src/util/ed6d25d@@util@sta/string_sanitize.cc.o.d' -o 'src/util/ed6d25d@@util@sta/string_sanitize.cc.o' -c ../src/util/string/sanitize.cc [4/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/string_strip.cc.o' -MF 'src/util/ed6d25d@@util@sta/string_strip.cc.o.d' -o 'src/util/ed6d25d@@util@sta/string_strip.cc.o' -c ../src/util/string/strip.cc [5/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/string_split.cc.o' -MF 'src/util/ed6d25d@@util@sta/string_split.cc.o.d' -o 'src/util/ed6d25d@@util@sta/string_split.cc.o' -c ../src/util/string/split.cc [6/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/log-level.cc.o' -MF 'src/util/ed6d25d@@util@sta/log-level.cc.o.d' -o 'src/util/ed6d25d@@util@sta/log-level.cc.o' -c ../src/util/log-level.cc [7/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/io.cc.o' -MF 'src/util/ed6d25d@@util@sta/io.cc.o.d' -o 'src/util/ed6d25d@@util@sta/io.cc.o' -c ../src/util/io.cc [8/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/range.cc.o' -MF 'src/util/ed6d25d@@util@sta/range.cc.o.d' -o 'src/util/ed6d25d@@util@sta/range.cc.o' -c ../src/util/range.cc [9/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/demangle.cc.o' -MF 'src/util/ed6d25d@@util@sta/demangle.cc.o.d' -o 'src/util/ed6d25d@@util@sta/demangle.cc.o' -c ../src/util/demangle.cc [10/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/mapping.cc.o' -MF 'src/util/ed6d25d@@util@sta/mapping.cc.o.d' -o 'src/util/ed6d25d@@util@sta/mapping.cc.o' -c ../src/util/mapping.cc [11/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/cmdline.cc.o' -MF 'src/util/ed6d25d@@util@sta/cmdline.cc.o.d' -o 'src/util/ed6d25d@@util@sta/cmdline.cc.o' -c ../src/util/cmdline.cc [12/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/rng.cc.o' -MF 'src/util/ed6d25d@@util@sta/rng.cc.o.d' -o 'src/util/ed6d25d@@util@sta/rng.cc.o' -c ../src/util/rng.cc [13/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/permute.cc.o' -MF 'src/util/ed6d25d@@util@sta/permute.cc.o.d' -o 'src/util/ed6d25d@@util@sta/permute.cc.o' -c ../src/util/permute.cc [14/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/file-paths.cc.o' -MF 'src/util/ed6d25d@@util@sta/file-paths.cc.o.d' -o 'src/util/ed6d25d@@util@sta/file-paths.cc.o' -c ../src/util/file-paths.cc [15/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/ptree.cc.o' -MF 'src/util/ed6d25d@@util@sta/ptree.cc.o.d' -o 'src/util/ed6d25d@@util@sta/ptree.cc.o' -c ../src/util/ptree.cc [16/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/text.cc.o' -MF 'src/util/ed6d25d@@util@sta/text.cc.o.d' -o 'src/util/ed6d25d@@util@sta/text.cc.o' -c ../src/util/text.cc [17/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/myexception.cc.o' -MF 'src/util/ed6d25d@@util@sta/myexception.cc.o.d' -o 'src/util/ed6d25d@@util@sta/myexception.cc.o' -c ../src/util/myexception.cc [18/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/util/ed6d25d@@util@sta -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/util/ed6d25d@@util@sta/time.cc.o' -MF 'src/util/ed6d25d@@util@sta/time.cc.o.d' -o 'src/util/ed6d25d@@util@sta/time.cc.o' -c ../src/util/time.cc [19/292] rm -f src/util/libutil.a && /usr/bin/aarch64-linux-gnu-ar csrD src/util/libutil.a 'src/util/ed6d25d@@util@sta/string_pred.cc.o' 'src/util/ed6d25d@@util@sta/string_sanitize.cc.o' 'src/util/ed6d25d@@util@sta/string_strip.cc.o' 'src/util/ed6d25d@@util@sta/string_split.cc.o' 'src/util/ed6d25d@@util@sta/log-level.cc.o' 'src/util/ed6d25d@@util@sta/io.cc.o' 'src/util/ed6d25d@@util@sta/range.cc.o' 'src/util/ed6d25d@@util@sta/demangle.cc.o' 'src/util/ed6d25d@@util@sta/mapping.cc.o' 'src/util/ed6d25d@@util@sta/cmdline.cc.o' 'src/util/ed6d25d@@util@sta/rng.cc.o' 'src/util/ed6d25d@@util@sta/permute.cc.o' 'src/util/ed6d25d@@util@sta/file-paths.cc.o' 'src/util/ed6d25d@@util@sta/ptree.cc.o' 'src/util/ed6d25d@@util@sta/text.cc.o' 'src/util/ed6d25d@@util@sta/myexception.cc.o' 'src/util/ed6d25d@@util@sta/time.cc.o' [20/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tree_newick-tokenizer.cc.o' -MF 'src/25a6634@@common@sta/tree_newick-tokenizer.cc.o.d' -o 'src/25a6634@@common@sta/tree_newick-tokenizer.cc.o' -c ../src/tree/newick-tokenizer.cc [21/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC 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-DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_mctree.cc.o' -MF 'src/25a6634@@common@sta/tools_mctree.cc.o.d' -o 'src/25a6634@@common@sta/tools_mctree.cc.o' -c ../src/tools/mctree.cc [42/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_stats-table.cc.o' -MF 'src/25a6634@@common@sta/tools_stats-table.cc.o.d' -o 'src/25a6634@@common@sta/tools_stats-table.cc.o' -c ../src/tools/stats-table.cc [43/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_findroot.cc.o' -MF 'src/25a6634@@common@sta/tools_findroot.cc.o.d' -o 'src/25a6634@@common@sta/tools_findroot.cc.o' -c ../src/tools/findroot.cc [44/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_optimize.cc.o' -MF 'src/25a6634@@common@sta/tools_optimize.cc.o.d' -o 'src/25a6634@@common@sta/tools_optimize.cc.o' -c ../src/tools/optimize.cc [45/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_distance-report.cc.o' -MF 'src/25a6634@@common@sta/tools_distance-report.cc.o.d' -o 'src/25a6634@@common@sta/tools_distance-report.cc.o' -c ../src/tools/distance-report.cc [46/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_inverse.cc.o' -MF 'src/25a6634@@common@sta/tools_inverse.cc.o.d' -o 'src/25a6634@@common@sta/tools_inverse.cc.o' -c ../src/tools/inverse.cc [47/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_joint-A-T.cc.o' -MF 'src/25a6634@@common@sta/tools_joint-A-T.cc.o.d' -o 'src/25a6634@@common@sta/tools_joint-A-T.cc.o' -c ../src/tools/joint-A-T.cc [48/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_distance-methods.cc.o' -MF 'src/25a6634@@common@sta/tools_distance-methods.cc.o.d' -o 'src/25a6634@@common@sta/tools_distance-methods.cc.o' -c ../src/tools/distance-methods.cc [49/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@common@sta -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@common@sta/tools_consensus-tree.cc.o' -MF 'src/25a6634@@common@sta/tools_consensus-tree.cc.o.d' -o 'src/25a6634@@common@sta/tools_consensus-tree.cc.o' -c ../src/tools/consensus-tree.cc [50/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/closure.cc.o' -MF 'src/computation/973f3a2@@computation@sta/closure.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/closure.cc.o' -c ../src/computation/closure.cc [51/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/object.cc.o' -MF 'src/computation/973f3a2@@computation@sta/object.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/object.cc.o' -c ../src/computation/object.cc [52/292] rm -f src/libcommon.a && /usr/bin/aarch64-linux-gnu-ar csrD src/libcommon.a 'src/25a6634@@common@sta/tree_newick-tokenizer.cc.o' 'src/25a6634@@common@sta/tree_sequencetree.cc.o' 'src/25a6634@@common@sta/tree_tree.cc.o' 'src/25a6634@@common@sta/tree_tree-util.cc.o' 'src/25a6634@@common@sta/tree_randomtree.cc.o' 'src/25a6634@@common@sta/tree-align_n_indels.cc.o' 'src/25a6634@@common@sta/sequence_alphabet.cc.o' 'src/25a6634@@common@sta/sequence_sequence.cc.o' 'src/25a6634@@common@sta/sequence_sequence-format.cc.o' 'src/25a6634@@common@sta/tools_read-trees.cc.o' 'src/25a6634@@common@sta/alignment_alignment-util.cc.o' 'src/25a6634@@common@sta/alignment_load.cc.o' 'src/25a6634@@common@sta/alignment_alignment.cc.o' 'src/25a6634@@common@sta/alignment_alignment-random.cc.o' 'src/25a6634@@common@sta/alignment_index-matrix.cc.o' 'src/25a6634@@common@sta/tree-align_link.cc.o' 'src/25a6634@@common@sta/models_path.cc.o' 'src/25a6634@@common@sta/tools_statistics.cc.o' 'src/25a6634@@common@sta/tools_partition.cc.o' 'src/25a6634@@common@sta/tools_tree-dist.cc.o' 'src/25a6634@@common@sta/tools_parsimony.cc.o' 'src/25a6634@@common@sta/tools_mctree.cc.o' 'src/25a6634@@common@sta/tools_stats-table.cc.o' 'src/25a6634@@common@sta/tools_findroot.cc.o' 'src/25a6634@@common@sta/tools_optimize.cc.o' 'src/25a6634@@common@sta/tools_distance-report.cc.o' 'src/25a6634@@common@sta/tools_inverse.cc.o' 'src/25a6634@@common@sta/tools_joint-A-T.cc.o' 'src/25a6634@@common@sta/tools_distance-methods.cc.o' 'src/25a6634@@common@sta/tools_consensus-tree.cc.o' [53/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/program.cc.o' -MF 'src/computation/973f3a2@@computation@sta/program.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/program.cc.o' -c ../src/computation/program.cc ../src/computation/program.cc: In member function ‘void Program::check_dependencies()’: ../src/computation/program.cc:155:10: warning: unused variable ‘index’ [-Wunused-variable] 155 | int index = find_module(name); | ^~~~~ [54/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/preprocess.cc.o' -MF 'src/computation/973f3a2@@computation@sta/preprocess.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/preprocess.cc.o' -c ../src/computation/preprocess.cc [55/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/module.cc.o' -MF 'src/computation/973f3a2@@computation@sta/module.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/module.cc.o' -c ../src/computation/module.cc [56/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/computation/973f3a2@@computation@sta -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/loader.cc.o' -MF 'src/computation/973f3a2@@computation@sta/loader.cc.o.d' -o 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-Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ 'src/computation/973f3a2@@computation@sta/optimization_simplifier.cc.o' -MF 'src/computation/973f3a2@@computation@sta/optimization_simplifier.cc.o.d' -o 'src/computation/973f3a2@@computation@sta/optimization_simplifier.cc.o' -c ../src/computation/optimization/simplifier.cc [104/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp_hmm.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp_hmm.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp_hmm.cc.o' -c ../src/dp/dp_hmm.cc [105/292] rm -f src/computation/libcomputation.a && /usr/bin/aarch64-linux-gnu-ar csrD src/computation/libcomputation.a 'src/computation/973f3a2@@computation@sta/object.cc.o' 'src/computation/973f3a2@@computation@sta/closure.cc.o' 'src/computation/973f3a2@@computation@sta/program.cc.o' 'src/computation/973f3a2@@computation@sta/preprocess.cc.o' 'src/computation/973f3a2@@computation@sta/module.cc.o' 'src/computation/973f3a2@@computation@sta/loader.cc.o' 'src/computation/973f3a2@@computation@sta/context.cc.o' 'src/computation/973f3a2@@computation@sta/operations.cc.o' 'src/computation/973f3a2@@computation@sta/param.cc.o' 'src/computation/973f3a2@@computation@sta/parser_desugar.cc.o' 'src/computation/973f3a2@@computation@sta/parser_desugar-case.cc.o' 'src/computation/973f3a2@@computation@sta/parser_rename.cc.o' 'src/computation/973f3a2@@computation@sta/parser_driver.cc.o' 'src/computation/973f3a2@@computation@sta/parser_lexer.cc.o' 'src/computation/973f3a2@@computation@sta/parser_parser.cc.o' 'src/computation/973f3a2@@computation@sta/expression_operator.cc.o' 'src/computation/973f3a2@@computation@sta/expression_expression.cc.o' 'src/computation/973f3a2@@computation@sta/expression_constructor.cc.o' 'src/computation/973f3a2@@computation@sta/expression_expression_ref.cc.o' 'src/computation/973f3a2@@computation@sta/expression_AST_node.cc.o' 'src/computation/973f3a2@@computation@sta/expression_apply.cc.o' 'src/computation/973f3a2@@computation@sta/expression_substitute.cc.o' 'src/computation/973f3a2@@computation@sta/expression_indexify.cc.o' 'src/computation/973f3a2@@computation@sta/expression_let.cc.o' 'src/computation/973f3a2@@computation@sta/expression_case.cc.o' 'src/computation/973f3a2@@computation@sta/expression_trim.cc.o' 'src/computation/973f3a2@@computation@sta/expression_tuple.cc.o' 'src/computation/973f3a2@@computation@sta/expression_list.cc.o' 'src/computation/973f3a2@@computation@sta/expression_var.cc.o' 'src/computation/973f3a2@@computation@sta/expression_lambda.cc.o' 'src/computation/973f3a2@@computation@sta/expression_random_variable.cc.o' 'src/computation/973f3a2@@computation@sta/expression_modifiable.cc.o' 'src/computation/973f3a2@@computation@sta/expression_reg_var.cc.o' 'src/computation/973f3a2@@computation@sta/expression_bool.cc.o' 'src/computation/973f3a2@@computation@sta/expression_resolved_symbol.cc.o' 'src/computation/973f3a2@@computation@sta/expression_maybe.cc.o' 'src/computation/973f3a2@@computation@sta/expression_do_block.cc.o' 'src/computation/973f3a2@@computation@sta/machine_args.cc.o' 'src/computation/973f3a2@@computation@sta/machine_tokens.cc.o' 'src/computation/973f3a2@@computation@sta/machine_graph_register.cc.o' 'src/computation/973f3a2@@computation@sta/machine_show_graph.cc.o' 'src/computation/973f3a2@@computation@sta/machine_evaluate.cc.o' 'src/computation/973f3a2@@computation@sta/machine_sums.cc.o' 'src/computation/973f3a2@@computation@sta/machine_gc.cc.o' 'src/computation/973f3a2@@computation@sta/machine_reroot.cc.o' 'src/computation/973f3a2@@computation@sta/machine_effects.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_free-vars.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_set-levels.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_float-out.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_occurrence.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_inliner.cc.o' 'src/computation/973f3a2@@computation@sta/optimization_simplifier.cc.o' [106/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_hmm.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_hmm.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_hmm.cc.o' -c ../src/dp/hmm.cc [107/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp-engine.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp-engine.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp-engine.cc.o' -c ../src/dp/dp-engine.cc [108/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp-array.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp-array.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp-array.cc.o' -c ../src/dp/dp-array.cc [109/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp-matrix.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_dp-matrix.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_dp-matrix.cc.o' -c ../src/dp/dp-matrix.cc [110/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_dp-cube.cc.o' -MF 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'src/25a6634@@baliphy@sta/dp_2way.cc.o' -c ../src/dp/2way.cc [112/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_3way.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_3way.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_3way.cc.o' -c ../src/dp/3way.cc [113/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_5way.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_5way.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_5way.cc.o' -c ../src/dp/5way.cc [114/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/dp_alignment-sums.cc.o' -MF 'src/25a6634@@baliphy@sta/dp_alignment-sums.cc.o.d' -o 'src/25a6634@@baliphy@sta/dp_alignment-sums.cc.o' -c ../src/dp/alignment-sums.cc [115/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include 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/usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/probability_probability.cc.o' -MF 'src/25a6634@@baliphy@sta/probability_probability.cc.o.d' -o 'src/25a6634@@baliphy@sta/probability_probability.cc.o' -c ../src/probability/probability.cc [150/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/imodel_imodel.cc.o' -MF 'src/25a6634@@baliphy@sta/imodel_imodel.cc.o.d' -o 'src/25a6634@@baliphy@sta/imodel_imodel.cc.o' -c ../src/imodel/imodel.cc [151/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc 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-fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/tools_parsimony2.cc.o' -MF 'src/25a6634@@baliphy@sta/tools_parsimony2.cc.o.d' -o 'src/25a6634@@baliphy@sta/tools_parsimony2.cc.o' -c ../src/tools/parsimony2.cc [155/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@baliphy@sta -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@baliphy@sta/version.cc.o' -MF 'src/25a6634@@baliphy@sta/version.cc.o.d' -o 'src/25a6634@@baliphy@sta/version.cc.o' -c ../src/version.cc ../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 67 | s<<__DATE__<<" "<<__TIME__; | ^~~~~~~~ ../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 67 | s<<__DATE__<<" "<<__TIME__; | ^~~~~~~~ [156/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/bali-phy.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/bali-phy.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/bali-phy.cc.o' -c ../src/bali-phy/bali-phy.cc ../src/bali-phy/bali-phy.cc: In function ‘void report_mem()’: ../src/bali-phy/bali-phy.cc:122:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 122 | system(cmd.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~ [157/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 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-DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/A-T-model.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/A-T-model.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/A-T-model.cc.o' -c ../src/bali-phy/A-T-model.cc [159/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/help.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/help.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/help.cc.o' -c ../src/bali-phy/help.cc [160/292] rm -f src/libbaliphy.a && /usr/bin/aarch64-linux-gnu-ar csrD src/libbaliphy.a 'src/25a6634@@baliphy@sta/dp_dp_hmm.cc.o' 'src/25a6634@@baliphy@sta/dp_hmm.cc.o' 'src/25a6634@@baliphy@sta/dp_dp-engine.cc.o' 'src/25a6634@@baliphy@sta/dp_dp-array.cc.o' 'src/25a6634@@baliphy@sta/dp_dp-matrix.cc.o' 'src/25a6634@@baliphy@sta/dp_dp-cube.cc.o' 'src/25a6634@@baliphy@sta/dp_2way.cc.o' 'src/25a6634@@baliphy@sta/dp_3way.cc.o' 'src/25a6634@@baliphy@sta/dp_5way.cc.o' 'src/25a6634@@baliphy@sta/dp_alignment-sums.cc.o' 'src/25a6634@@baliphy@sta/mcmc_mcmc.cc.o' 'src/25a6634@@baliphy@sta/mcmc_proposals.cc.o' 'src/25a6634@@baliphy@sta/mcmc_slice-sampling.cc.o' 'src/25a6634@@baliphy@sta/mcmc_AIS.cc.o' 'src/25a6634@@baliphy@sta/mcmc_logger.cc.o' 'src/25a6634@@baliphy@sta/mcmc_moves.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-branch-lengths.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-alignment.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-topology-SPR.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-topology-NNI.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-two-nodes.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-node.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-cube.cc.o' 'src/25a6634@@baliphy@sta/mcmc_sample-tri.cc.o' 'src/25a6634@@baliphy@sta/mcmc_setup.cc.o' 'src/25a6634@@baliphy@sta/substitution_substitution.cc.o' 'src/25a6634@@baliphy@sta/substitution_parsimony.cc.o' 'src/25a6634@@baliphy@sta/math_exponential.cc.o' 'src/25a6634@@baliphy@sta/math_eigenvalue.cc.o' 'src/25a6634@@baliphy@sta/math_pow2.cc.o' 'src/25a6634@@baliphy@sta/models_parameters.cc.o' 'src/25a6634@@baliphy@sta/models_site-compression.cc.o' 'src/25a6634@@baliphy@sta/models_TreeInterface.cc.o' 'src/25a6634@@baliphy@sta/models_setup.cc.o' 'src/25a6634@@baliphy@sta/models_rules.cc.o' 'src/25a6634@@baliphy@sta/models_parse.cc.o' 'src/25a6634@@baliphy@sta/models_translate.cc.o' 'src/25a6634@@baliphy@sta/models_unification.cc.o' 'src/25a6634@@baliphy@sta/models_model.cc.o' 'src/25a6634@@baliphy@sta/tree-align_link2.cc.o' 'src/25a6634@@baliphy@sta/probability_choose.cc.o' 'src/25a6634@@baliphy@sta/probability_probability.cc.o' 'src/25a6634@@baliphy@sta/imodel_imodel.cc.o' 'src/25a6634@@baliphy@sta/alignment_alignment-constraint.cc.o' 'src/25a6634@@baliphy@sta/alignment_alignment-util2.cc.o' 'src/25a6634@@baliphy@sta/tree-align_n_indels2.cc.o' 'src/25a6634@@baliphy@sta/tools_parsimony2.cc.o' 'src/25a6634@@baliphy@sta/version.cc.o' [161/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/files.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/files.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/files.cc.o' -c ../src/bali-phy/files.cc [162/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/loggers.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/loggers.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/loggers.cc.o' -c ../src/bali-phy/loggers.cc [163/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/system.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/system.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/system.cc.o' -c ../src/bali-phy/system.cc [164/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/cmd_line.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/cmd_line.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/cmd_line.cc.o' -c ../src/bali-phy/cmd_line.cc [165/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/bali-phy/9a58946@@bali-phy@exe -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/bali-phy/9a58946@@bali-phy@exe/paths.cc.o' -MF 'src/bali-phy/9a58946@@bali-phy@exe/paths.cc.o.d' -o 'src/bali-phy/9a58946@@bali-phy@exe/paths.cc.o' -c ../src/bali-phy/paths.cc [166/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Array@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Array@sha/Array.cc.o' -MF 'src/builtins/2382537@@Array@sha/Array.cc.o.d' -o 'src/builtins/2382537@@Array@sha/Array.cc.o' -c ../src/builtins/Array.cc [167/292] /usr/bin/aarch64-linux-gnu-g++ -o src/bali-phy/bali-phy 'src/bali-phy/9a58946@@bali-phy@exe/link-partitions.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/bali-phy.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/help.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/A-T-model.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/files.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/loggers.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/system.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/cmd_line.cc.o' 'src/bali-phy/9a58946@@bali-phy@exe/paths.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-export-dynamic -Wl,--whole-archive -Wl,--start-group src/util/libutil.a src/libcommon.a src/computation/libcomputation.a src/libbaliphy.a -Wl,--no-whole-archive -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -ldl -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [168/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Array.so 'src/builtins/2382537@@Array@sha/Array.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [169/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Data@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Data@sha/Data.cc.o' -MF 'src/builtins/2382537@@Data@sha/Data.cc.o.d' -o 'src/builtins/2382537@@Data@sha/Data.cc.o' -c ../src/builtins/Data.cc [170/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Data.so 'src/builtins/2382537@@Data@sha/Data.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [171/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Prelude@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -MF 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o.d' -o 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -c ../src/builtins/Prelude.cc [172/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Prelude.so 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [173/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Alphabet@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -MF 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o.d' -o 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -c ../src/builtins/Alphabet.cc [174/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Alphabet.so 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [175/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Pair@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -MF 'src/builtins/2382537@@Pair@sha/Pair.cc.o.d' -o 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -c ../src/builtins/Pair.cc [176/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Pair.so 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [177/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Modifiables@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -MF 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o.d' -o 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -c ../src/builtins/Modifiables.cc [178/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Modifiables.so 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [179/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Alignment@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -MF 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o.d' -o 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -c ../src/builtins/Alignment.cc [180/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Alignment.so 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [181/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@PopGen@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -MF 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o.d' -o 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -c ../src/builtins/PopGen.cc [182/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/PopGen.so 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [183/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Distribution@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -MF 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o.d' -o 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -c ../src/builtins/Distribution.cc [184/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Distribution.so 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [185/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Range@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Range@sha/Range.cc.o' -MF 'src/builtins/2382537@@Range@sha/Range.cc.o.d' -o 'src/builtins/2382537@@Range@sha/Range.cc.o' -c ../src/builtins/Range.cc [186/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Range.so 'src/builtins/2382537@@Range@sha/Range.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [187/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@SModel@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -MF 'src/builtins/2382537@@SModel@sha/SModel.cc.o.d' -o 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -c ../src/builtins/SModel.cc [188/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/SModel.so 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [189/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@MCMC@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -MF 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o.d' -o 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -c ../src/builtins/MCMC.cc [190/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/MCMC.so 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [191/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Vector@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -MF 'src/builtins/2382537@@Vector@sha/Vector.cc.o.d' -o 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -c ../src/builtins/Vector.cc [192/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Vector.so 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [193/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Environment@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -MF 'src/builtins/2382537@@Environment@sha/Environment.cc.o.d' -o 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -c ../src/builtins/Environment.cc [194/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Environment.so 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [195/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@SMC@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -MF 'src/builtins/2382537@@SMC@sha/SMC.cc.o.d' -o 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -c ../src/builtins/SMC.cc [196/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/SMC.so 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [197/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Real@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Real@sha/Real.cc.o' -MF 'src/builtins/2382537@@Real@sha/Real.cc.o.d' -o 'src/builtins/2382537@@Real@sha/Real.cc.o' -c ../src/builtins/Real.cc [198/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Real.so 'src/builtins/2382537@@Real@sha/Real.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Real.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [199/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Bits@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Bits@sha/Bits.cc.o' -MF 'src/builtins/2382537@@Bits@sha/Bits.cc.o.d' -o 'src/builtins/2382537@@Bits@sha/Bits.cc.o' -c ../src/builtins/Bits.cc [200/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Bits.so 'src/builtins/2382537@@Bits@sha/Bits.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Bits.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [201/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Foreign@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Foreign@sha/Foreign.cc.o' -MF 'src/builtins/2382537@@Foreign@sha/Foreign.cc.o.d' -o 'src/builtins/2382537@@Foreign@sha/Foreign.cc.o' -c ../src/builtins/Foreign.cc [202/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Foreign.so 'src/builtins/2382537@@Foreign@sha/Foreign.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Foreign.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [203/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/builtins/2382537@@Text@sha -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/builtins/2382537@@Text@sha/Text.cc.o' -MF 'src/builtins/2382537@@Text@sha/Text.cc.o.d' -o 'src/builtins/2382537@@Text@sha/Text.cc.o' -c ../src/builtins/Text.cc [204/292] /usr/bin/aarch64-linux-gnu-g++ -o src/builtins/Text.so 'src/builtins/2382537@@Text@sha/Text.cc.o' -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Text.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -Wl,--end-group [205/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@model_P@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -MF 'src/25a6634@@model_P@exe/tools_model_P.cc.o.d' -o 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -c ../src/tools/model_P.cc [206/292] /usr/bin/aarch64-linux-gnu-g++ -o src/model_P 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [207/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@statreport@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -MF 'src/25a6634@@statreport@exe/tools_statreport.cc.o.d' -o 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -c ../src/tools/statreport.cc [208/292] /usr/bin/aarch64-linux-gnu-g++ -o src/statreport 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [209/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@stats-select@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -MF 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o.d' -o 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -c ../src/tools/stats-select.cc [210/292] /usr/bin/aarch64-linux-gnu-g++ -o src/stats-select 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [211/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignment-gild@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -MF 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o.d' -o 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -c ../src/tools/alignment-gild.cc [212/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignment-gild 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [213/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignment-consensus@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -MF 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o.d' -o 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -c ../src/tools/alignment-consensus.cc [214/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignment-consensus 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [215/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignment-max@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -MF 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o.d' -o 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -c ../src/tools/alignment-max.cc [216/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignment-max 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [217/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignment-chop-internal@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -MF 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o.d' -o 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -c ../src/tools/alignment-chop-internal.cc [218/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignment-indices@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -MF 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o.d' -o 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -c ../src/tools/alignment-indices.cc [219/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignment-chop-internal 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [220/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignment-info@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -MF 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o.d' -o 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -c ../src/tools/alignment-info.cc [221/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignment-indices 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [222/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignment-info 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [223/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignment-cat@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -MF 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o.d' -o 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -c ../src/tools/alignment-cat.cc [224/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignment-cat 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [225/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignment-translate@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -MF 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o.d' -o 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -c ../src/tools/alignment-translate.cc [226/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignment-find@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -MF 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o.d' -o 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -c ../src/tools/alignment-find.cc [227/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignment-translate 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [228/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@trees-consensus@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -MF 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o.d' -o 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -c ../src/tools/trees-consensus.cc [229/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignment-find 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [230/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@tree-mean-lengths@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -MF 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o.d' -o 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -c ../src/tools/tree-mean-lengths.cc [231/292] /usr/bin/aarch64-linux-gnu-g++ -o src/trees-consensus 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [232/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@mctree-mean-lengths@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -MF 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o.d' -o 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -c ../src/tools/mctree-mean-lengths.cc [233/292] /usr/bin/aarch64-linux-gnu-g++ -o src/tree-mean-lengths 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [234/292] /usr/bin/aarch64-linux-gnu-g++ -o src/mctree-mean-lengths 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [235/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@trees-to-SRQ@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -MF 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o.d' -o 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -c ../src/tools/trees-to-SRQ.cc [236/292] /usr/bin/aarch64-linux-gnu-g++ -o src/trees-to-SRQ 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [237/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@pickout@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -MF 'src/25a6634@@pickout@exe/tools_pickout.cc.o.d' -o 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -c ../src/tools/pickout.cc [238/292] /usr/bin/aarch64-linux-gnu-g++ -o src/pickout 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [239/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@cut-range@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -MF 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o.d' -o 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -c ../src/tools/cut-range.cc [240/292] /usr/bin/aarch64-linux-gnu-g++ -o src/cut-range 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [241/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@trees-distances@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -MF 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o.d' -o 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -c ../src/tools/trees-distances.cc [242/292] /usr/bin/aarch64-linux-gnu-g++ -o src/trees-distances 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [243/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignment-thin 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [244/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignments-diff@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -MF 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o.d' -o 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -c ../src/tools/alignments-diff.cc [245/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignments-diff 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [246/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@tree-tool@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -MF 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o.d' -o 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -c ../src/tools/tree-tool.cc [247/292] /usr/bin/aarch64-linux-gnu-g++ -o src/tree-tool 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [248/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignment-distances@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -MF 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o.d' -o 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -c ../src/tools/alignment-distances.cc [249/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignment-draw@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' -MF 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o.d' -o 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' -c ../src/tools/alignment-draw.cc [250/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignment-distances 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [251/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@alignment-draw@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -MF 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o.d' -o 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -c ../src/tools/colors.cc [252/292] /usr/bin/aarch64-linux-gnu-g++ -o src/alignment-draw 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [253/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@trees-bootstrap@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -MF 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o.d' -o 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -c ../src/tools/trees-bootstrap.cc [254/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@trees-bootstrap@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -MF 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o.d' -o 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -c ../src/tools/bootstrap.cc [255/292] /usr/bin/aarch64-linux-gnu-g++ -o src/trees-bootstrap 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [256/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@draw-tree@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -MF 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o.d' -o 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -c ../src/tools/draw-tree.cc ../src/tools/draw-tree.cc: In function ‘MC_tree_with_lengths collapse_MC_tree(const MC_tree_with_lengths&)’: ../src/tools/draw-tree.cc:3351:10: warning: unused variable ‘right1’ [-Wunused-variable] 3351 | int right1 = MC1.mapping[b1]; | ^~~~~~ [257/292] /usr/bin/aarch64-linux-gnu-g++ -o src/draw-tree 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm /usr/lib/aarch64-linux-gnu/libcairo.so -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src 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/usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@summarize-ancestors@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@summarize-ancestors@exe/tools_summarize-ancestors.cc.o' -MF 'src/25a6634@@summarize-ancestors@exe/tools_summarize-ancestors.cc.o.d' -o 'src/25a6634@@summarize-ancestors@exe/tools_summarize-ancestors.cc.o' -c ../src/tools/summarize-ancestors.cc [260/292] /usr/bin/aarch64-linux-gnu-g++ -o src/extract-ancestors 'src/25a6634@@extract-ancestors@exe/tools_extract-ancestors.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [261/292] /usr/bin/aarch64-linux-gnu-g++ -Isrc/25a6634@@bali-subsample@exe -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_FILESYSTEM_STATIC_LINK=1 -DBOOST_SYSTEM_STATIC_LINK=1 -DBOOST_CHRONO_STATIC_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -MF 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o.d' -o 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -c ../src/tools/subsample.cc [262/292] /usr/bin/aarch64-linux-gnu-g++ -o src/summarize-ancestors 'src/25a6634@@summarize-ancestors@exe/tools_summarize-ancestors.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [263/292] /usr/bin/aarch64-linux-gnu-g++ -o src/bali-subsample 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/aarch64-linux-gnu/libboost_system.a /usr/lib/aarch64-linux-gnu/libboost_random.a /usr/lib/aarch64-linux-gnu/libboost_chrono.a /usr/lib/aarch64-linux-gnu/libboost_program_options.a /usr/lib/aarch64-linux-gnu/libboost_filesystem.a -lm -Wl,--end-group '-Wl,-rpath,$ORIGIN/util:$ORIGIN/:XXX' -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src/util -Wl,-rpath-link,/<>/obj-aarch64-linux-gnu/src [264/292] /usr/bin/meson --internal exe --capture doc/bali-phy.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy.md [265/292] /usr/bin/meson --internal exe --capture doc/model_P.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/model_P.md [266/292] /usr/bin/meson --internal exe --capture doc/statreport.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/statreport.md [267/292] /usr/bin/meson --internal exe --capture doc/stats-select.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/stats-select.md [268/292] /usr/bin/meson --internal exe --capture doc/alignment-gild.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-gild.md [269/292] /usr/bin/meson --internal exe --capture doc/alignment-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart 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--internal exe --capture doc/trees-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-distances.md [284/292] /usr/bin/meson --internal exe --capture doc/alignment-thin.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-thin.md [285/292] /usr/bin/meson --internal exe --capture doc/alignments-diff.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignments-diff.md [286/292] /usr/bin/meson --internal exe --capture doc/trees-bootstrap.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-bootstrap.md [287/292] /usr/bin/meson --internal exe --capture doc/draw-tree.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/draw-tree.md [288/292] /usr/bin/meson --internal exe --capture doc/extract-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/extract-ancestors.md [289/292] /usr/bin/meson --internal exe --capture doc/summarize-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/summarize-ancestors.md [290/292] /usr/bin/meson --internal exe --capture doc/bali-subsample.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-subsample.md [291/292] /usr/bin/meson --internal exe --capture doc/bp-analyze.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bp-analyze.md [292/292] /usr/bin/meson --internal exe --capture doc/bali-phy-pkg.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy-pkg.md dh_auto_test -a -O--buildsystem=meson create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem=meson dh_testroot -a -O--buildsystem=meson dh_prep -a -O--buildsystem=meson dh_auto_install -a -O--buildsystem=meson cd obj-aarch64-linux-gnu && DESTDIR=/<>/bali-phy-3.5.0.1\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install [1/5] Generating git-version.h with a custom command [1/2] Installing files. Installing subdir /<>/haskell to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/Tree.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/SModel.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/SMC.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/Range.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/Probability.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/Prelude.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/PopGen.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/Parameters.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/MCMC.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/IModel.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/System/Environment.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/System Installing /<>/haskell/SModel/ReversibleMarkov.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/haskell/SModel/Nucleotides.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/haskell/SModel/Likelihood.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/haskell/SModel/Frequency.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/haskell/SModel/Doublets.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/haskell/SModel/Codons.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/haskell/Probability/Random.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability Installing /<>/haskell/Probability/Distribution/Uniform.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Tree.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/RandomAlignment.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Poisson.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Normal.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Mixture.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/List.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Laplace.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Geometric.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Gamma.hs to 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/<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Categorical.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Binomial.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Beta.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Bernoulli.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Foreign/Vector.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /<>/haskell/Foreign/String.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /<>/haskell/Foreign/Pair.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /<>/haskell/Foreign/Introspection.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /<>/haskell/Data/Tuple.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Text.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Set.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/ReadFile.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Ord.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Maybe.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Matrix.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Map.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/List.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/JSON.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Ix.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Function.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Eq.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Either.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Bool.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/BitVector.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Array.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Control/Monad.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Control Installing /<>/haskell/Compiler/ST.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/haskell/Compiler/Real.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/haskell/Compiler/Num.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/haskell/Compiler/IO.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/haskell/Compiler/Enum.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/haskell/Compiler/Base.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/haskell/Bio/Sequence.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Bio Installing /<>/haskell/Bio/Alphabet.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Bio Installing /<>/haskell/Bio/Alignment.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Bio Installing /<>/haskell/Bio/Alignment/Pairwise.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment Installing /<>/haskell/Bio/Alignment/Matrix.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment Installing /<>/haskell/BAliPhy/ATModel.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy Installing /<>/haskell/BAliPhy/ATModel/DataPartition.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy/ATModel Installing subdir /<>/bindings to /<>/debian/bali-phy/usr/lib/bali-phy/bindings Installing /<>/bindings/models/x3x3.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/x3_sym.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/x3.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/x2x2.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/x2_sym.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/x2.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/wag_freq.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/wag.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/tn93_sym.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/tn93.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/sample.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/rs07_relaxed_rates.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/rs07.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/rs05.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/rna_16a.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/pam.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/mut_sel_aa.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/mut_sel.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/multi_rate.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/multiMixtureModel.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/mixture.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/mg94k.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/mg94_ext.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/mg94.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m8a_test.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m8a.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m8.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m7.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m3_test.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m3.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m2a_test.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m2a.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m1a.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/lg08_freq.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/lg08.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/k80.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/jtt.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/jc69.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/inv.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/hky85_sym.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/hky85.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/gy94_ext.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/gy94.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/gwF.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/gtr_sym.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/gtr.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/get_q.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/fe.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/fMutSel0.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/fMutSel.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/f81.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/f61.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/f3x4.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/f1x4.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/f.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/equ.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/empirical.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/density.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/dNdS.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/branch_site.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/Rates/log_normal.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /<>/bindings/models/Rates/gamma.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /<>/bindings/models/Rates/free.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /<>/bindings/models/Frequencies/uniform.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Frequencies Installing /<>/bindings/models/Covarion/wang07.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /<>/bindings/models/Covarion/ts98.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /<>/bindings/models/Covarion/huelsenbeck02.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /<>/bindings/models/Covarion/galtier01.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /<>/bindings/functions/zipWith.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/zip.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/unit_mixture.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/uniform_discretize.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/tan.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/take.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/sub.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/standard_code.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/sqrt.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/sin.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/rna.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/replicate.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/quantile.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/num_branches.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/mul.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/map.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/log.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/letters.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/letter_pairs.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/length.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/intToDouble.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/getNucleotides.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/getAminoAcids.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/getAlphabet.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/exp.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/dna.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/div.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/cos.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/codons.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/add.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/aa.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/constructors/Pair.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors Installing /<>/bindings/functions/constructors/Nil.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors Installing /<>/bindings/functions/constructors/Cons.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors Installing /<>/bindings/distributions/uniform_int.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/uniform.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/shifted_gamma.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/shifted_exponential.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/poisson.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/normal.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/log_normal.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/log_laplace.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/log_gamma.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/laplace.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/iid.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/geometric.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/gamma.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/exponential.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/dirichlet_on.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/dirichlet.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/cauchy.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/binomial.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/beta.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/bernoulli.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing subdir /<>/help to /<>/debian/bali-phy/usr/lib/bali-phy/help Installing /<>/help/parameters.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help Installing /<>/help/alphabets.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help Installing /<>/help/parameters/priors.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/parameters Installing /<>/help/commands/version.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/verbose.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/unalign.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/tree.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/test.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/subsample.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/smodel.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/set.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/seed.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/scale.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/print.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/pre-burnin.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/package-path.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/name.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/model.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/link.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/iterations.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/imodel.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/enable.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/disable.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/config.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/branch-lengths.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/alphabet.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/align.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/Rao-Blackwellize.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/alphabets/genetic-code.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/help/alphabets/Triplets.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/help/alphabets/Doublets.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/help/alphabets/Codons.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing subdir /<>/examples to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples Installing /<>/examples/sequences/microbotryum/table1.accessions to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/paper.txt to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/other.accessions to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/additional.accessions to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/76.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/76.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/76-muscle.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/76-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/76-clustalw.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/76-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/37.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/37.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/37-muscle.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/37-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/37-clustalw.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/37-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30.aln to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30-muscle.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30-clustalw.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/lrRNA/mollusc12.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/examples/sequences/lrRNA/mollusc.rna.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/examples/sequences/lrRNA/mollusc.gb to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/examples/sequences/lrRNA/mollusc.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/examples/sequences/lrRNA/keep.pl to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/examples/sequences/lrRNA/NOTES.txt to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/examples/sequences/ferns/orig.nex to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/examples/sequences/ferns/orig.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/examples/sequences/ferns/config2.txt to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/examples/sequences/ferns/config.txt to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/examples/sequences/ferns/cleaned.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/examples/sequences/ferns/README.txt to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/subtilase.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/rr_receiver.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/papain.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/lysozyme.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/legume_lectin.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/lectin.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/haloperoxidase.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/annexin.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/ITS/ITS2-trimmed.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /<>/examples/sequences/ITS/ITS1-trimmed.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /<>/examples/sequences/ITS/5.8S.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /<>/examples/sequences/HIV/HIVSIV.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV Installing /<>/examples/sequences/HIV/chain-2005/pol.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/HIV/chain-2005/pol-common.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/HIV/chain-2005/env.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/HIV/chain-2005/env-common.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/HIV/chain-2005/env-clustal.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/Globins/some.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/many.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/many-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/globins.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/few.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/few-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/few-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/few-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/bglobin.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/10-globins.xml to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/10-globins-Lunter.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Enolase/enolase-38.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /<>/examples/sequences/Enolase/enolase-38-trimmed.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /<>/examples/sequences/EF-Tu/5d.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/5d-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/5d-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/5d-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/48b.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/48b-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/48b-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/25-mafft.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/12d.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/12d-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/12d-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/12d-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/Duplications/trp-tyr/tyr.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/examples/sequences/Duplications/trp-tyr/trp.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/examples/sequences/5S-rRNA/5d.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/5d-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/5d-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/5d-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-t-coffee.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-t-coffee.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-fsa.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-fsa.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-tcoffee.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-tcoffee.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-t-coffee.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-t-coffee.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-poy.trees to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-poy.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-poy.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-poy.command to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-fsa.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-fsa.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/models/Airline.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Coalmine.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Demo1.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Demo2.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Demo3.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Demo4.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Demo5.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Demo6.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing src/bali-phy/bali-phy to /<>/debian/bali-phy/usr/bin Installing src/builtins/Array.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Data.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Prelude.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alphabet.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Pair.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Modifiables.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alignment.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/PopGen.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Distribution.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Range.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SModel.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/MCMC.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Vector.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Environment.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SMC.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Real.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Bits.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Foreign.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Text.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/model_P to /<>/debian/bali-phy/usr/bin Installing src/statreport to /<>/debian/bali-phy/usr/bin Installing src/stats-select to /<>/debian/bali-phy/usr/bin Installing src/alignment-gild to /<>/debian/bali-phy/usr/bin Installing src/alignment-consensus to /<>/debian/bali-phy/usr/bin Installing src/alignment-max to /<>/debian/bali-phy/usr/bin Installing src/alignment-chop-internal to /<>/debian/bali-phy/usr/bin Installing src/alignment-indices to /<>/debian/bali-phy/usr/bin Installing src/alignment-info to /<>/debian/bali-phy/usr/bin Installing src/alignment-cat to /<>/debian/bali-phy/usr/bin Installing src/alignment-translate to /<>/debian/bali-phy/usr/bin Installing src/alignment-find to /<>/debian/bali-phy/usr/bin Installing src/trees-consensus to /<>/debian/bali-phy/usr/bin Installing src/tree-mean-lengths to /<>/debian/bali-phy/usr/bin Installing src/mctree-mean-lengths to /<>/debian/bali-phy/usr/bin Installing src/trees-to-SRQ to /<>/debian/bali-phy/usr/bin Installing src/pickout to /<>/debian/bali-phy/usr/bin Installing src/cut-range to /<>/debian/bali-phy/usr/bin Installing src/trees-distances to /<>/debian/bali-phy/usr/bin Installing src/alignment-thin to /<>/debian/bali-phy/usr/bin Installing src/alignments-diff to /<>/debian/bali-phy/usr/bin Installing src/tree-tool to /<>/debian/bali-phy/usr/bin Installing src/alignment-distances to /<>/debian/bali-phy/usr/bin Installing src/alignment-draw to /<>/debian/bali-phy/usr/bin Installing src/trees-bootstrap to /<>/debian/bali-phy/usr/bin Installing src/draw-tree to /<>/debian/bali-phy/usr/bin Installing src/extract-ancestors to /<>/debian/bali-phy/usr/bin Installing src/summarize-ancestors to /<>/debian/bali-phy/usr/bin Installing src/bali-subsample to /<>/debian/bali-phy/usr/bin Installing doc/bali-phy.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/model_P.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/statreport.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/stats-select.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-gild.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-consensus.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-max.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-chop-internal.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-indices.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-info.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-cat.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-translate.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-find.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/trees-consensus.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/tree-mean-lengths.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/mctree-mean-lengths.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/trees-to-SRQ.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/pickout.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/cut-range.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/trees-distances.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-thin.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignments-diff.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/tree-tool.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-distances.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-draw.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/trees-bootstrap.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/draw-tree.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/extract-ancestors.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/summarize-ancestors.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/bali-subsample.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/bp-analyze.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/bali-phy-pkg.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing /<>/scripts/bp-analyze to /<>/debian/bali-phy/usr/bin Installing /<>/scripts/bali-phy-pkg to /<>/debian/bali-phy/usr/bin Installing /<>/scripts/compare-runs.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/compare-runs2.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/tree-plot1.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/tree-plot2.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/tree-plot3.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/tree-plot2-3D.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/tree-plot1-3D.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/tree-plot3-3D.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec dh_installdocs -a -O--buildsystem=meson dh_installchangelogs -a -O--buildsystem=meson dh_installman -a -O--buildsystem=meson dh_installinit -a -O--buildsystem=meson dh_installsystemduser -a -O--buildsystem=meson dh_lintian -a -O--buildsystem=meson dh_perl -a -O--buildsystem=meson dh_link -a -O--buildsystem=meson dh_strip_nondeterminism -a -O--buildsystem=meson dh_compress -a -O--buildsystem=meson dh_fixperms -a -O--buildsystem=meson dh_missing -a -O--buildsystem=meson dh_dwz -a -O--buildsystem=meson dh_strip -a -O--buildsystem=meson dh_makeshlibs -a -O--buildsystem=meson dh_shlibdeps -a -O--buildsystem=meson dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Text.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Bits.so contains an unresolvable reference to symbol _ZN14expression_refC1ERKb: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol _ZNK11context_ref18probability_ratiosERKS_: it's probably a plugin dpkg-shlibdeps: warning: 37 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _Z8beta_pdfddd: it's probably a plugin dpkg-shlibdeps: warning: 32 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol _ZN13OperationArgs24evaluate_slot_to_closureEi: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _Z12find_columnsRK9alignmentRKSt8functionIFbiEE: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Foreign.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Real.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _ZNK13OperationArgs12reg_for_slotEi: it's probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin dpkg-shlibdeps: warning: 26 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZNK8Doublets15is_watson_crickEi: it's probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol bool_true: it's probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=meson dh_gencontrol -a -O--buildsystem=meson dh_md5sums -a -O--buildsystem=meson dh_builddeb -a -O--buildsystem=meson dpkg-deb: building package 'bali-phy' in '../bali-phy_3.5.0.1+dfsg-1_arm64.deb'. dpkg-deb: building package 'bali-phy-dbgsym' in '../bali-phy-dbgsym_3.5.0.1+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../bali-phy_3.5.0.1+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-06-11T17:50:31Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bali-phy_3.5.0.1+dfsg-1_arm64.changes: -------------------------------------- Format: 1.8 Date: Thu, 05 Mar 2020 17:36:36 -0500 Source: bali-phy Binary: bali-phy bali-phy-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 3.5.0.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Benjamin Redelings Description: bali-phy - Bayesian Inference of Alignment and Phylogeny Closes: 951991 Changes: bali-phy (3.5.0.1+dfsg-1) unstable; urgency=medium . [ Steffen Moeller ] * d/u/metadata: yamllint . [ Benjamin Redelings ] * Update copyright. * New upstream version 3.5.0.1+dfsg Closes: #951991 * Require meson >= 0.52 * Depend on librange-v3-dev * Update standards version. * Add --buildtype=release to debian/rules * Depend on python3 . [ Andreas Tille ] * debhelper-compat 12 (routine-update) * Add salsa-ci file (routine-update) * Set field Upstream-Contact in debian/copyright. * Set upstream metadata fields: Bug-Database, Bug-Submit. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Add lintian override for spelling issue Checksums-Sha1: f057696ad00d4cc819daf68e3bef922a5782c037 138387080 bali-phy-dbgsym_3.5.0.1+dfsg-1_arm64.deb 6cf24bac802079f0288dd586503998fbde8f1d0a 7896 bali-phy_3.5.0.1+dfsg-1_arm64.buildinfo 6fef12c0a045f9c013563df482d6363fae241e82 6698128 bali-phy_3.5.0.1+dfsg-1_arm64.deb Checksums-Sha256: 823ac30d8aa23910426dd8af5d8894b923d5a7916a3b017b20ddd2181c53af02 138387080 bali-phy-dbgsym_3.5.0.1+dfsg-1_arm64.deb 08d4430a1515c56b318b47b8c0af10f9ab761ccea050dbf328e019bdbfd6adb5 7896 bali-phy_3.5.0.1+dfsg-1_arm64.buildinfo 0824bcaa40f89d885ef6f9d0545cf619ae0bd38b90f0778d8059cdf21fb2d685 6698128 bali-phy_3.5.0.1+dfsg-1_arm64.deb Files: 743e470b4d51f0f1d47834c93441d7d0 138387080 debug optional bali-phy-dbgsym_3.5.0.1+dfsg-1_arm64.deb 4f12c1e7d0eed31e95c78452f9eb2ad6 7896 science optional bali-phy_3.5.0.1+dfsg-1_arm64.buildinfo aee190919cf0dc940a5b81f915667a12 6698128 science optional bali-phy_3.5.0.1+dfsg-1_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: bali-phy Binary: bali-phy Architecture: arm64 Version: 3.5.0.1+dfsg-1 Checksums-Md5: 743e470b4d51f0f1d47834c93441d7d0 138387080 bali-phy-dbgsym_3.5.0.1+dfsg-1_arm64.deb aee190919cf0dc940a5b81f915667a12 6698128 bali-phy_3.5.0.1+dfsg-1_arm64.deb Checksums-Sha1: f057696ad00d4cc819daf68e3bef922a5782c037 138387080 bali-phy-dbgsym_3.5.0.1+dfsg-1_arm64.deb 6fef12c0a045f9c013563df482d6363fae241e82 6698128 bali-phy_3.5.0.1+dfsg-1_arm64.deb Checksums-Sha256: 823ac30d8aa23910426dd8af5d8894b923d5a7916a3b017b20ddd2181c53af02 138387080 bali-phy-dbgsym_3.5.0.1+dfsg-1_arm64.deb 0824bcaa40f89d885ef6f9d0545cf619ae0bd38b90f0778d8059cdf21fb2d685 6698128 bali-phy_3.5.0.1+dfsg-1_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 11 Jun 2020 17:50:29 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-8), binutils-common (= 2.34-8), binutils-x86-64-linux-gnu (= 2.34-8), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.35.2-2), build-essential (= 12.8), bzip2 (= 1.0.8-3), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-9 (= 9.3.0-13), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.1), debianutils (= 4.11), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.8.1-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), file (= 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Packaging Team Installed-Size: 41463 Depends: libc6 (>= 2.29), libcairo2 (>= 1.4.10), libgcc-s1 (>= 4.5), libstdc++6 (>= 9), perl:any, python3 Recommends: r-base, gnuplot Suggests: figtree, seaview Section: science Priority: optional Homepage: http://www.bali-phy.org Description: Bayesian Inference of Alignment and Phylogeny BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot. . BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. 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./usr/share/man/man1/mctree-mean-lengths.1.gz -rw-r--r-- root/root 439 2020-03-05 22:36 ./usr/share/man/man1/model_P.1.gz -rw-r--r-- root/root 473 2020-03-05 22:36 ./usr/share/man/man1/pickout.1.gz -rw-r--r-- root/root 847 2020-03-05 22:36 ./usr/share/man/man1/statreport.1.gz -rw-r--r-- root/root 500 2020-03-05 22:36 ./usr/share/man/man1/stats-select.1.gz -rw-r--r-- root/root 747 2020-03-05 22:36 ./usr/share/man/man1/summarize-ancestors.1.gz -rw-r--r-- root/root 720 2020-03-05 22:36 ./usr/share/man/man1/tree-mean-lengths.1.gz -rw-r--r-- root/root 629 2020-03-05 22:36 ./usr/share/man/man1/tree-tool.1.gz -rw-r--r-- root/root 866 2020-03-05 22:36 ./usr/share/man/man1/trees-bootstrap.1.gz -rw-r--r-- root/root 1132 2020-03-05 22:36 ./usr/share/man/man1/trees-consensus.1.gz -rw-r--r-- root/root 897 2020-03-05 22:36 ./usr/share/man/man1/trees-distances.1.gz -rw-r--r-- root/root 634 2020-03-05 22:36 ./usr/share/man/man1/trees-to-SRQ.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [624 B] Get:5 copy:/<>/apt_archive ./ Packages [708 B] Fetched 2295 B in 0s (92.9 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-address-xs-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-socket-ssl-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl Recommended packages: gnupg libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-address-xs-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-socket-ssl-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 6849 kB of archives. After this operation, 20.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.1 [19.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b5 [38.4 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1 [15.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.24-1 [16.2 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.19-1 [126 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b1 [26.0 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b2 [28.1 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 5 [7360 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-3 [320 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.067-1 [212 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.24-1 [372 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.45-1 [84.4 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-5 [105 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.12-1 [12.9 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004002-1 [13.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004000-1 [59.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-1 [53.6 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.011+ds-1 [106 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.011+ds-1 [108 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010001-1 [338 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1 [35.6 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-3 [89.9 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.80.0 [1286 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6849 kB in 0s (38.4 MB/s) Selecting previously unselected package netbase. (Reading database ... 41098 files and directories currently installed.) Preparing to unpack .../00-netbase_6.1_all.deb ... Unpacking netbase (6.1) ... Selecting previously unselected package diffstat. Preparing to unpack .../01-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../02-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../03-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package gpg. Preparing to unpack .../04-gpg_2.2.20-1_amd64.deb ... Unpacking gpg (2.2.20-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../05-libapt-pkg-perl_0.1.36+b3_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b3) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../06-libb-hooks-op-check-perl_0.22-1+b2_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../07-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../08-libdevel-callchecker-perl_0.008-1+b1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../09-libparams-classify-perl_0.015-1+b2_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b2) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../10-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. 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Unpacking libcpanel-json-xs-perl (4.19-1) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../22-libdevel-size-perl_0.83-1+b1_amd64.deb ... Unpacking libdevel-size-perl (0.83-1+b1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../23-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../24-libemail-address-xs-perl_1.04-1+b2_amd64.deb ... Unpacking libemail-address-xs-perl (1.04-1+b2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../25-perl-openssl-defaults_5_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (5) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../26-libnet-ssleay-perl_1.88-3_amd64.deb ... Unpacking libnet-ssleay-perl (1.88-3) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../27-libio-socket-ssl-perl_2.067-1_all.deb ... Unpacking libio-socket-ssl-perl (2.067-1) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../28-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../29-libtimedate-perl_2.3300-1_all.deb ... Unpacking libtimedate-perl (2.3300-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../30-libmailtools-perl_2.21-1_all.deb ... Unpacking libmailtools-perl (2.21-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../31-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../32-libnet-dns-perl_1.24-1_all.deb ... Unpacking libnet-dns-perl (1.24-1) ... 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Preparing to unpack .../44-liburi-perl_1.76-2_all.deb ... Unpacking liburi-perl (1.76-2) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../45-libhtml-parser-perl_3.72-5_amd64.deb ... Unpacking libhtml-parser-perl (3.72-5) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../46-libimport-into-perl_1.002005-1_all.deb ... Unpacking libimport-into-perl (1.002005-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../47-libstruct-dumb-perl_0.12-1_all.deb ... Unpacking libstruct-dumb-perl (0.12-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../48-libio-async-perl_0.75-1_all.deb ... Unpacking libio-async-perl (0.75-1) ... Selecting previously unselected package liblinux-epoll-perl. Preparing to unpack .../49-liblinux-epoll-perl_0.017-1_amd64.deb ... Unpacking liblinux-epoll-perl (0.017-1) ... Selecting previously unselected package libio-async-loop-epoll-perl. Preparing to unpack .../50-libio-async-loop-epoll-perl_0.20-1_all.deb ... Unpacking libio-async-loop-epoll-perl (0.20-1) ... Selecting previously unselected package libjson-maybexs-perl. Preparing to unpack .../51-libjson-maybexs-perl_1.004002-1_all.deb ... Unpacking libjson-maybexs-perl (1.004002-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../52-liblist-compare-perl_0.53-1_all.deb ... Unpacking liblist-compare-perl (0.53-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../53-liblist-moreutils-perl_0.416-1+b5_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b5) ... Selecting previously unselected package liblist-utilsby-perl. Preparing to unpack .../54-liblist-utilsby-perl_0.11-1_all.deb ... Unpacking liblist-utilsby-perl (0.11-1) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../55-librole-tiny-perl_2.001004-1_all.deb ... Unpacking librole-tiny-perl (2.001004-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../56-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../57-libsub-quote-perl_2.006006-1_all.deb ... Unpacking libsub-quote-perl (2.006006-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../58-libmoo-perl_2.004000-1_all.deb ... Unpacking libmoo-perl (2.004000-1) ... Selecting previously unselected package libmoox-aliases-perl. Preparing to unpack .../59-libmoox-aliases-perl_0.001006-1_all.deb ... Unpacking libmoox-aliases-perl (0.001006-1) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../60-libpackage-stash-perl_0.38-1_all.deb ... Unpacking libpackage-stash-perl (0.38-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../61-libsub-identify-perl_0.14-1+b2_amd64.deb ... Unpacking libsub-identify-perl (0.14-1+b2) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../62-libsub-name-perl_0.26-1_amd64.deb ... Unpacking libsub-name-perl (0.26-1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../63-libnamespace-clean-perl_0.27-1_all.deb ... Unpacking libnamespace-clean-perl (0.27-1) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../64-libpath-tiny-perl_0.114-1_all.deb ... Unpacking libpath-tiny-perl (0.114-1) ... Selecting previously unselected package libsereal-decoder-perl. Preparing to unpack .../65-libsereal-decoder-perl_4.011+ds-1_amd64.deb ... Unpacking libsereal-decoder-perl (4.011+ds-1) ... Selecting previously unselected package libsereal-encoder-perl. Preparing to unpack .../66-libsereal-encoder-perl_4.011+ds-1_amd64.deb ... Unpacking libsereal-encoder-perl (4.011+ds-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../67-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libtype-tiny-perl. Preparing to unpack .../68-libtype-tiny-perl_1.010001-1_all.deb ... Unpacking libtype-tiny-perl (1.010001-1) ... Selecting previously unselected package libunicode-utf8-perl. Preparing to unpack .../69-libunicode-utf8-perl_0.62-1+b1_amd64.deb ... Unpacking libunicode-utf8-perl (0.62-1+b1) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../70-libxml-writer-perl_0.625-1_all.deb ... Unpacking libxml-writer-perl (0.625-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../71-libyaml-0-2_0.2.2-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.2-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../72-libyaml-libyaml-perl_0.82+repack-1_amd64.deb ... Unpacking libyaml-libyaml-perl (0.82+repack-1) ... Selecting previously unselected package patchutils. Preparing to unpack .../73-patchutils_0.3.4-3_amd64.deb ... Unpacking patchutils (0.3.4-3) ... Selecting previously unselected package t1utils. Preparing to unpack .../74-t1utils_1.41-4_amd64.deb ... Unpacking t1utils (1.41-4) ... Selecting previously unselected package lintian. Preparing to unpack .../75-lintian_2.80.0_all.deb ... Unpacking lintian (2.80.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:arm64. Preparing to unpack .../76-sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36+b3) ... Setting up libunicode-utf8-perl (0.62-1+b1) ... Setting up libstruct-dumb-perl (0.12-1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libclone-perl (0.45-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b2) ... Setting up libcpanel-json-xs-perl (4.19-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdevel-size-perl (0.83-1+b1) ... Setting up libfuture-perl (0.45-1) ... Setting up libyaml-libyaml-perl (0.82+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (5) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.3-7) ... Setting up libconfig-tiny-perl (2.24-1) ... Setting up libsereal-encoder-perl (4.011+ds-1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libio-async-perl (0.75-1) ... Setting up patchutils (0.3.4-3) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 2712872 Build-Time: 1595 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 35 Job: bali-phy_3.5.0.1+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: bali-phy Package-Time: 1640 Source-Version: 3.5.0.1+dfsg-1 Space: 2712872 Status: successful Version: 3.5.0.1+dfsg-1 -------------------------------------------------------------------------------- Finished at 2020-06-11T17:50:31Z Build needed 00:27:20, 2712872k disk space