sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | bali-phy 3.5.0.2+dfsg-1 (ppc64el) Sat, 26 Sep 2020 18:44:55 +0000 | +==============================================================================+ Package: bali-phy Version: 3.5.0.2+dfsg-1 Source Version: 3.5.0.2+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-bc7655fa-fe57-45b1-987a-da153c942924' with '<>' I: NOTICE: Log filtering will replace 'build/bali-phy-TPzyiX/resolver-HgCQix' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-09-26-1403.51.pdiff [17.5 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-09-26-1403.51.pdiff [16.1 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-09-26-1403.51.pdiff [17.5 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-09-26-1403.51.pdiff [16.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main ppc64el Packages [8207 kB] Fetched 8442 kB in 2s (5280 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'bali-phy' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bali-phy.git Please use: git clone https://salsa.debian.org/med-team/bali-phy.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1106 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main bali-phy 3.5.0.2+dfsg-1 (dsc) [2241 B] Get:2 http://debian.oregonstate.edu/debian unstable/main bali-phy 3.5.0.2+dfsg-1 (tar) [1100 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main bali-phy 3.5.0.2+dfsg-1 (diff) [4364 B] Fetched 1106 kB in 0s (53.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/bali-phy-TPzyiX/bali-phy-3.5.0.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bali-phy-TPzyiX' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), meson (>= 0.52), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 13), meson (>= 0.52), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [489 B] Get:5 copy:/<>/apt_archive ./ Packages [581 B] Fetched 2027 B in 0s (84.0 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils build-essential cpp-10-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig-config fonts-dejavu-core g++ g++-10 g++-10-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-10-base:ppc64el gcc-10-cross-base gcc-10-powerpc64le-linux-gnu gcc-10-powerpc64le-linux-gnu-base gcc-9-base:ppc64el gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libblkid-dev:ppc64el libblkid1:ppc64el libboost-chrono-dev:ppc64el libboost-chrono1.71-dev:ppc64el libboost-chrono1.71.0:ppc64el libboost-dev:ppc64el libboost-filesystem-dev:ppc64el libboost-filesystem1.71-dev:ppc64el libboost-filesystem1.71.0:ppc64el libboost-program-options-dev:ppc64el libboost-program-options1.71-dev:ppc64el libboost-program-options1.71.0:ppc64el libboost-random-dev:ppc64el libboost-random1.71-dev:ppc64el libboost-random1.71.0:ppc64el libboost-system-dev:ppc64el libboost-system1.71-dev:ppc64el libboost-system1.71.0:ppc64el libboost1.71-dev:ppc64el libbrotli-dev:ppc64el libbrotli1:ppc64el libbsd0:ppc64el libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcairo-gobject2:ppc64el libcairo-script-interpreter2:ppc64el libcairo2:ppc64el libcairo2-dev:ppc64el libcmark-gfm-extensions0 libcmark-gfm0 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libeigen3-dev libelf1 libexpat1 libexpat1:ppc64el libexpat1-dev:ppc64el libffi-dev:ppc64el libffi7:ppc64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig-dev:ppc64el libfontconfig1:ppc64el libfontconfig1-dev:ppc64el libfreetype-dev:ppc64el libfreetype6:ppc64el libfreetype6-dev:ppc64el libgcc-10-dev-ppc64el-cross libgcc-9-dev:ppc64el libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libglib2.0-0 libglib2.0-0:ppc64el libglib2.0-bin libglib2.0-data libglib2.0-dev:ppc64el libglib2.0-dev-bin libgomp1:ppc64el libgomp1-ppc64el-cross libice-dev:ppc64el libice6:ppc64el libicu67 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross liblzo2-2:ppc64el libmagic-mgc libmagic1 libmount-dev:ppc64el libmount1:ppc64el libpcre16-3:ppc64el libpcre2-16-0:ppc64el libpcre2-32-0:ppc64el libpcre2-8-0:ppc64el libpcre2-dev:ppc64el libpcre2-posix2:ppc64el libpcre3:ppc64el libpcre3-dev:ppc64el libpcre32-3:ppc64el libpcrecpp0v5:ppc64el libperl5.30 libpipeline1 libpixman-1-0:ppc64el libpixman-1-dev:ppc64el libpng-dev:ppc64el libpng16-16:ppc64el libpthread-stubs0-dev:ppc64el libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libquadmath0:ppc64el libquadmath0-ppc64el-cross librange-v3-dev libreadline8 libselinux1:ppc64el libselinux1-dev:ppc64el libsepol1:ppc64el libsepol1-dev:ppc64el libsigsegv2 libsm-dev:ppc64el libsm6:ppc64el libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++-10-dev-ppc64el-cross libstdc++-9-dev:ppc64el libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libuuid1:ppc64el libx11-6:ppc64el libx11-data libx11-dev:ppc64el libxau-dev:ppc64el libxau6:ppc64el libxcb-render0:ppc64el libxcb-render0-dev:ppc64el libxcb-shm0:ppc64el libxcb-shm0-dev:ppc64el libxcb1:ppc64el libxcb1-dev:ppc64el libxdmcp-dev:ppc64el libxdmcp6:ppc64el libxext-dev:ppc64el libxext6:ppc64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxrender-dev:ppc64el libxrender1:ppc64el libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db meson mime-support ninja-build nlohmann-json3-dev pandoc pandoc-data perl perl-modules-5.30 pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.8 python3.8-minimal readline-common sensible-utils ucf uuid-dev:ppc64el x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g:ppc64el zlib1g-dev:ppc64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:ppc64el libboost1.71-doc:ppc64el libboost-atomic1.71-dev:ppc64el libboost-container1.71-dev:ppc64el libboost-context1.71-dev:ppc64el libboost-contract1.71-dev:ppc64el libboost-coroutine1.71-dev:ppc64el libboost-date-time1.71-dev:ppc64el libboost-exception1.71-dev:ppc64el libboost-fiber1.71-dev:ppc64el libboost-graph1.71-dev:ppc64el libboost-graph-parallel1.71-dev:ppc64el libboost-iostreams1.71-dev:ppc64el libboost-locale1.71-dev:ppc64el libboost-log1.71-dev:ppc64el libboost-math1.71-dev:ppc64el libboost-mpi1.71-dev:ppc64el libboost-mpi-python1.71-dev:ppc64el libboost-numpy1.71-dev:ppc64el libboost-python1.71-dev:ppc64el libboost-regex1.71-dev:ppc64el libboost-serialization1.71-dev:ppc64el libboost-stacktrace1.71-dev:ppc64el libboost-test1.71-dev:ppc64el libboost-thread1.71-dev:ppc64el libboost-timer1.71-dev:ppc64el libboost-type-erasure1.71-dev:ppc64el libboost-wave1.71-dev:ppc64el libboost1.71-tools-dev:ppc64el libmpfrc++-dev:ppc64el libntl-dev:ppc64el glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el glibc-doc manpages-dev:ppc64el libcairo2-doc:ppc64el gnupg git bzr libeigen3-doc libmpfrc++-dev freetype2-doc:ppc64el libgirepository1.0-dev:ppc64el libglib2.0-doc:ppc64el libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libice-doc:ppc64el libsm-doc:ppc64el libstdc++-10-doc libstdc++-9-doc:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc:ppc64el libxcb-doc:ppc64el libxext-doc:ppc64el libyaml-shell-perl m4-doc apparmor less www-browser texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc nodejs php python ruby r-base-core libjs-mathjax node-katex citation-style-language-styles perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.8-venv python3.8-doc binfmt-support readline-doc Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:ppc64el libfile-fcntllock-perl libarchive-cpio-perl shared-mime-info xdg-user-dirs shared-mime-info:ppc64el xdg-user-dirs:ppc64el libpng-tools:ppc64el librange-v3-doc libltdl-dev uuid-runtime:ppc64el libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils build-essential cpp-10-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig-config fonts-dejavu-core g++ g++-10 g++-10-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-10-base:ppc64el gcc-10-cross-base gcc-10-powerpc64le-linux-gnu gcc-10-powerpc64le-linux-gnu-base gcc-9-base:ppc64el gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libblkid-dev:ppc64el libblkid1:ppc64el libboost-chrono-dev:ppc64el libboost-chrono1.71-dev:ppc64el libboost-chrono1.71.0:ppc64el libboost-dev:ppc64el libboost-filesystem-dev:ppc64el libboost-filesystem1.71-dev:ppc64el libboost-filesystem1.71.0:ppc64el libboost-program-options-dev:ppc64el libboost-program-options1.71-dev:ppc64el libboost-program-options1.71.0:ppc64el libboost-random-dev:ppc64el libboost-random1.71-dev:ppc64el libboost-random1.71.0:ppc64el libboost-system-dev:ppc64el libboost-system1.71-dev:ppc64el libboost-system1.71.0:ppc64el libboost1.71-dev:ppc64el libbrotli-dev:ppc64el libbrotli1:ppc64el libbsd0:ppc64el libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcairo-gobject2:ppc64el libcairo-script-interpreter2:ppc64el libcairo2:ppc64el libcairo2-dev:ppc64el libcmark-gfm-extensions0 libcmark-gfm0 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libeigen3-dev libelf1 libexpat1 libexpat1:ppc64el libexpat1-dev:ppc64el libffi-dev:ppc64el libffi7:ppc64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig-dev:ppc64el libfontconfig1:ppc64el libfontconfig1-dev:ppc64el libfreetype-dev:ppc64el libfreetype6:ppc64el libfreetype6-dev:ppc64el libgcc-10-dev-ppc64el-cross libgcc-9-dev:ppc64el libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libglib2.0-0 libglib2.0-0:ppc64el libglib2.0-bin libglib2.0-data libglib2.0-dev:ppc64el libglib2.0-dev-bin libgomp1:ppc64el libgomp1-ppc64el-cross libice-dev:ppc64el libice6:ppc64el libicu67 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross liblzo2-2:ppc64el libmagic-mgc libmagic1 libmount-dev:ppc64el libmount1:ppc64el libpcre16-3:ppc64el libpcre2-16-0:ppc64el libpcre2-32-0:ppc64el libpcre2-8-0:ppc64el libpcre2-dev:ppc64el libpcre2-posix2:ppc64el libpcre3:ppc64el libpcre3-dev:ppc64el libpcre32-3:ppc64el libpcrecpp0v5:ppc64el libperl5.30 libpipeline1 libpixman-1-0:ppc64el libpixman-1-dev:ppc64el libpng-dev:ppc64el libpng16-16:ppc64el libpthread-stubs0-dev:ppc64el libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libquadmath0:ppc64el libquadmath0-ppc64el-cross librange-v3-dev libreadline8 libselinux1:ppc64el libselinux1-dev:ppc64el libsepol1:ppc64el libsepol1-dev:ppc64el libsigsegv2 libsm-dev:ppc64el libsm6:ppc64el libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++-10-dev-ppc64el-cross libstdc++-9-dev:ppc64el libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libuuid1:ppc64el libx11-6:ppc64el libx11-data libx11-dev:ppc64el libxau-dev:ppc64el libxau6:ppc64el libxcb-render0:ppc64el libxcb-render0-dev:ppc64el libxcb-shm0:ppc64el libxcb-shm0-dev:ppc64el libxcb1:ppc64el libxcb1-dev:ppc64el libxdmcp-dev:ppc64el libxdmcp6:ppc64el libxext-dev:ppc64el libxext6:ppc64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxrender-dev:ppc64el libxrender1:ppc64el libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db meson mime-support ninja-build nlohmann-json3-dev pandoc pandoc-data perl perl-modules-5.30 pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.8 python3.8-minimal readline-common sbuild-build-depends-main-dummy:ppc64el sensible-utils ucf uuid-dev:ppc64el x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g:ppc64el zlib1g-dev:ppc64el 0 upgraded, 227 newly installed, 0 to remove and 0 not upgraded. Need to get 162 MB of archives. After this operation, 894 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1008 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36-3+b1 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.8-minimal amd64 3.8.6-1 [761 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 python3.8-minimal amd64 3.8.6-1 [1863 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.8.2-3 [37.6 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 mime-support all 3.64 [37.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.33.0-1 [790 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.8-stdlib amd64 3.8.6-1 [1720 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 python3.8 amd64 3.8.6-1 [422 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.8.2-3 [20.8 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.8.2-3 [63.7 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-10-base ppc64el 10.2.0-9 [199 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-9-base ppc64el 9.3.0-18 [197 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-4 [801 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-powerpc64le-linux-gnu amd64 2.35.1-1 [2291 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-3 [2395 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-9 [1737 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-9 [8664 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-powerpc64le-linux-gnu-base amd64 10.2.0-9cross1 [199 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-powerpc64le-linux-gnu amd64 10.2.0-9cross1 [7312 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-powerpc64le-linux-gnu amd64 4:10.2.0-1 [16.8 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.0-9cross1 [195 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-ppc64el-cross all 2.31-1cross2 [1563 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-ppc64el-cross all 10.2.0-9cross1 [30.5 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-ppc64el-cross all 10.2.0-9cross1 [106 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-ppc64el-cross all 10.2.0-9cross1 [28.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-ppc64el-cross all 10.2.0-9cross1 [9732 B] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-ppc64el-cross all 10.2.0-9cross1 [341 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-ppc64el-cross all 10.2.0-9cross1 [154 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-ppc64el-cross all 10.2.0-9cross1 [316 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-ppc64el-cross all 10.2.0-9cross1 [498 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-ppc64el-cross all 10.2.0-9cross1 [146 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0-ppc64el-cross all 10.2.0-9cross1 [149 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-ppc64el-cross all 10.2.0-9cross1 [1246 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-powerpc64le-linux-gnu amd64 10.2.0-9cross1 [14.6 MB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-powerpc64le-linux-gnu amd64 4:10.2.0-1 [1468 B] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-ppc64el-cross all 5.7.6-1cross2 [1222 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-ppc64el-cross all 2.31-1cross2 [2437 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-ppc64el-cross all 10.2.0-9cross1 [1768 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-powerpc64le-linux-gnu amd64 10.2.0-9cross1 [7977 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 g++-powerpc64le-linux-gnu amd64 4:10.2.0-1 [1184 B] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6 [692 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-ppc64el all 12.8 [6652 B] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.181-1 [164 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.0-2 [1361 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-s1 ppc64el 10.2.0-9 [30.3 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt1 ppc64el 1:4.4.17-1 [96.3 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6 ppc64el 2.31-3 [2860 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main ppc64el libasan5 ppc64el 9.3.0-18 [408 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main ppc64el libatomic1 ppc64el 10.2.0-9 [9872 B] Get:109 http://debian.oregonstate.edu/debian unstable/main ppc64el libblkid1 ppc64el 2.36-3+b1 [213 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main ppc64el linux-libc-dev ppc64el 5.8.10-1 [1177 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt-dev ppc64el 1:4.4.17-1 [119 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6-dev ppc64el 2.31-3 [2444 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main ppc64el libuuid1 ppc64el 2.36-3+b1 [84.5 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main ppc64el uuid-dev ppc64el 2.36-3+b1 [100 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main ppc64el libblkid-dev ppc64el 2.36-3+b1 [254 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main ppc64el libgomp1 ppc64el 10.2.0-9 [108 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main ppc64el libitm1 ppc64el 10.2.0-9 [28.8 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main ppc64el liblsan0 ppc64el 10.2.0-9 [155 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main ppc64el libtsan0 ppc64el 10.2.0-9 [323 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++6 ppc64el 10.2.0-9 [539 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main ppc64el libubsan1 ppc64el 10.2.0-9 [147 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main ppc64el libquadmath0 ppc64el 10.2.0-9 [149 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-9-dev ppc64el 9.3.0-18 [1259 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++-9-dev ppc64el 9.3.0-18 [1753 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost1.71-dev ppc64el 1.71.0-6+b2 [9098 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-chrono1.71.0 ppc64el 1.71.0-6+b2 [243 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-chrono1.71-dev ppc64el 1.71.0-6+b2 [253 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-chrono-dev ppc64el 1.71.0.3 [4752 B] Get:129 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-dev ppc64el 1.71.0.3 [4344 B] Get:130 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-filesystem1.71.0 ppc64el 1.71.0-6+b2 [269 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-system1.71.0 ppc64el 1.71.0-6+b2 [231 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-system1.71-dev ppc64el 1.71.0-6+b2 [232 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-filesystem1.71-dev ppc64el 1.71.0-6+b2 [289 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-filesystem-dev ppc64el 1.71.0.3 [4160 B] Get:135 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-program-options1.71.0 ppc64el 1.71.0-6+b2 [367 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-program-options1.71-dev ppc64el 1.71.0-6+b2 [415 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-program-options-dev ppc64el 1.71.0.3 [4132 B] Get:138 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-random1.71.0 ppc64el 1.71.0-6+b2 [242 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-random1.71-dev ppc64el 1.71.0-6+b2 [246 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-random-dev ppc64el 1.71.0.3 [4128 B] Get:141 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-system-dev ppc64el 1.71.0.3 [4268 B] Get:142 http://debian.oregonstate.edu/debian unstable/main ppc64el libbrotli1 ppc64el 1.0.9-2 [287 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main ppc64el libbrotli-dev ppc64el 1.0.9-2 [304 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main ppc64el libbsd0 ppc64el 0.10.0-1 [111 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main ppc64el libexpat1 ppc64el 2.2.9-1 [89.6 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-2 [94.7 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main ppc64el libpng16-16 ppc64el 1.6.37-3 [309 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main ppc64el libfreetype6 ppc64el 2.10.2+dfsg-3 [441 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main ppc64el libfontconfig1 ppc64el 2.13.1-4.2 [364 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main ppc64el libpixman-1-0 ppc64el 0.36.0-1 [483 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main ppc64el libxau6 ppc64el 1:1.0.8-1+b2 [19.8 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main ppc64el libxdmcp6 ppc64el 1:1.1.2-3 [26.2 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main ppc64el libxcb1 ppc64el 1.14-2 [143 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.12-1 [311 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main ppc64el libx11-6 ppc64el 2:1.6.12-1 [805 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main ppc64el libxcb-render0 ppc64el 1.14-2 [112 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main ppc64el libxcb-shm0 ppc64el 1.14-2 [102 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main ppc64el libxext6 ppc64el 2:1.3.3-1+b2 [49.9 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main ppc64el libxrender1 ppc64el 1:0.9.10-1 [31.6 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main ppc64el libcairo2 ppc64el 1.16.0-4 [732 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main ppc64el libffi7 ppc64el 3.3-4 [23.8 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre2-8-0 ppc64el 10.34-7 [225 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main ppc64el libselinux1 ppc64el 3.1-2 [97.6 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main ppc64el libmount1 ppc64el 2.36-3+b1 [231 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre3 ppc64el 2:8.39-13 [336 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main ppc64el libglib2.0-0 ppc64el 2.66.0-2 [1414 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main ppc64el libcairo-gobject2 ppc64el 1.16.0-4 [125 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main ppc64el liblzo2-2 ppc64el 2.10-2 [58.5 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main ppc64el libcairo-script-interpreter2 ppc64el 1.16.0-4 [167 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main ppc64el libexpat1-dev ppc64el 2.2.9-1 [134 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2 [195 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main ppc64el libpng-dev ppc64el 1.6.37-3 [316 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main ppc64el libfreetype-dev ppc64el 2.10.2+dfsg-3 [603 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main ppc64el libfreetype6-dev ppc64el 2.10.2+dfsg-3 [74.5 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main ppc64el libfontconfig-dev ppc64el 2.13.1-4.2 [388 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main ppc64el libfontconfig1-dev ppc64el 2.13.1-4.2 [238 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2020.1-1 [594 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2020.1-1 [3404 B] Get:181 http://debian.oregonstate.edu/debian unstable/main ppc64el libxau-dev ppc64el 1:1.0.8-1+b2 [23.1 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main ppc64el libxdmcp-dev ppc64el 1:1.1.2-3 [42.1 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main ppc64el libpthread-stubs0-dev ppc64el 0.4-1 [5344 B] Get:185 http://debian.oregonstate.edu/debian unstable/main ppc64el libxcb1-dev ppc64el 1.14-2 [182 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main ppc64el libx11-dev ppc64el 2:1.6.12-1 [893 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main ppc64el libxrender-dev ppc64el 1:0.9.10-1 [39.8 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2020.1-1 [3404 B] Get:189 http://debian.oregonstate.edu/debian unstable/main ppc64el libxext-dev ppc64el 2:1.3.3-1+b2 [105 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+20 [252 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main ppc64el libice6 ppc64el 2:1.0.10-1 [63.3 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main ppc64el libsm6 ppc64el 2:1.2.3-1 [36.0 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main ppc64el libice-dev ppc64el 2:1.0.10-1 [73.7 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main ppc64el libsm-dev ppc64el 2:1.2.3-1 [39.5 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main ppc64el libpixman-1-dev ppc64el 0.36.0-1 [505 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main ppc64el libxcb-render0-dev ppc64el 1.14-2 [115 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main ppc64el libxcb-shm0-dev ppc64el 1.14-2 [103 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main ppc64el libffi-dev ppc64el 3.3-4 [58.7 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-data all 2.66.0-2 [1167 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-bin amd64 2.66.0-2 [138 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main amd64 python3-lib2to3 all 3.8.5-1 [78.4 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main amd64 python3-distutils all 3.8.5-1 [145 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-dev-bin amd64 2.66.0-2 [176 kB] Get:204 http://debian.oregonstate.edu/debian unstable/main ppc64el libsepol1 ppc64el 3.1-1 [288 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main ppc64el libsepol1-dev ppc64el 3.1-1 [377 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre2-16-0 ppc64el 10.34-7 [210 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre2-32-0 ppc64el 10.34-7 [201 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre2-posix2 ppc64el 10.34-7 [45.4 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre2-dev ppc64el 10.34-7 [666 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main ppc64el libselinux1-dev ppc64el 3.1-2 [184 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main ppc64el libmount-dev ppc64el 2.36-3+b1 [76.8 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre16-3 ppc64el 2:8.39-13 [252 kB] Get:213 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre32-3 ppc64el 2:8.39-13 [245 kB] Get:214 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcrecpp0v5 ppc64el 2:8.39-13 [153 kB] Get:215 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre3-dev ppc64el 2:8.39-13 [619 kB] Get:216 http://debian.oregonstate.edu/debian unstable/main ppc64el libglib2.0-dev ppc64el 2.66.0-2 [1730 kB] Get:217 http://debian.oregonstate.edu/debian unstable/main ppc64el libcairo2-dev ppc64el 1.16.0-4 [806 kB] Get:218 http://debian.oregonstate.edu/debian unstable/main amd64 libcmark-gfm0 amd64 0.29.0.gfm.0-6 [117 kB] Get:219 http://debian.oregonstate.edu/debian unstable/main amd64 libcmark-gfm-extensions0 amd64 0.29.0.gfm.0-6 [46.1 kB] Get:220 http://debian.oregonstate.edu/debian unstable/main amd64 libeigen3-dev all 3.3.7-3 [850 kB] Get:221 http://debian.oregonstate.edu/debian unstable/main amd64 librange-v3-dev all 0.11.0-1 [221 kB] Get:222 http://debian.oregonstate.edu/debian unstable/main amd64 ninja-build amd64 1.10.1-1 [112 kB] Get:223 http://debian.oregonstate.edu/debian unstable/main amd64 python3-pkg-resources all 49.3.1-2 [188 kB] Get:224 http://debian.oregonstate.edu/debian unstable/main amd64 meson all 0.55.3-1 [416 kB] Get:225 http://debian.oregonstate.edu/debian unstable/main amd64 nlohmann-json3-dev all 3.9.0-1 [677 kB] Get:226 http://debian.oregonstate.edu/debian unstable/main amd64 pandoc-data all 2.9.2.1-1 [376 kB] Get:227 http://debian.oregonstate.edu/debian unstable/main amd64 pandoc amd64 2.9.2.1-1+b1 [18.5 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 162 MB in 1s (113 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10451 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-3+b1_amd64.deb ... Unpacking bsdextrautils (2.36-3+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../05-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... 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Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../4-libsqlite3-0_3.33.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.33.0-1) ... Selecting previously unselected package libpython3.8-stdlib:amd64. Preparing to unpack .../5-libpython3.8-stdlib_3.8.6-1_amd64.deb ... Unpacking libpython3.8-stdlib:amd64 (3.8.6-1) ... Selecting previously unselected package python3.8. Preparing to unpack .../6-python3.8_3.8.6-1_amd64.deb ... Unpacking python3.8 (3.8.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.8.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.8.2-3) ... Setting up python3-minimal (3.8.2-3) ... Selecting previously unselected package python3. (Reading database ... 13683 files and directories currently installed.) Preparing to unpack .../000-python3_3.8.2-3_amd64.deb ... Unpacking python3 (3.8.2-3) ... Selecting previously unselected package gcc-10-base:ppc64el. Preparing to unpack .../001-gcc-10-base_10.2.0-9_ppc64el.deb ... Unpacking gcc-10-base:ppc64el (10.2.0-9) ... Selecting previously unselected package gcc-9-base:ppc64el. Preparing to unpack .../002-gcc-9-base_9.3.0-18_ppc64el.deb ... Unpacking gcc-9-base:ppc64el (9.3.0-18) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.38-5_amd64.deb ... Unpacking libmagic-mgc (1:5.38-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../005-libmagic1_1%3a5.38-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-5) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.38-5_amd64.deb ... Unpacking file (1:5.38-5) ... 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Unpacking libglib2.0-dev:ppc64el (2.66.0-2) ... Selecting previously unselected package libcairo2-dev:ppc64el. Preparing to unpack .../194-libcairo2-dev_1.16.0-4_ppc64el.deb ... Unpacking libcairo2-dev:ppc64el (1.16.0-4) ... Selecting previously unselected package libcmark-gfm0:amd64. Preparing to unpack .../195-libcmark-gfm0_0.29.0.gfm.0-6_amd64.deb ... Unpacking libcmark-gfm0:amd64 (0.29.0.gfm.0-6) ... Selecting previously unselected package libcmark-gfm-extensions0:amd64. Preparing to unpack .../196-libcmark-gfm-extensions0_0.29.0.gfm.0-6_amd64.deb ... Unpacking libcmark-gfm-extensions0:amd64 (0.29.0.gfm.0-6) ... Selecting previously unselected package libeigen3-dev. Preparing to unpack .../197-libeigen3-dev_3.3.7-3_all.deb ... Unpacking libeigen3-dev (3.3.7-3) ... Selecting previously unselected package librange-v3-dev. Preparing to unpack .../198-librange-v3-dev_0.11.0-1_all.deb ... Unpacking librange-v3-dev (0.11.0-1) ... Selecting previously unselected package ninja-build. 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Setting up x11-common (1:7.7+20) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:ppc64el (5.8.10-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up libpthread-stubs0-dev:ppc64el (0.4-1) ... Setting up ninja-build (1.10.1-1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up gcc-10-base:ppc64el (10.2.0-9) ... Setting up autotools-dev (20180224.1) ... Setting up libglib2.0-data (2.66.0-2) ... Setting up cross-config (2.6.15-3.1) ... Setting up libx11-data (2:1.6.12-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libcmark-gfm0:amd64 (0.29.0.gfm.0-6) ... Setting up gcc-10-cross-base (10.2.0-9cross1) ... Setting up libitm1-ppc64el-cross (10.2.0-9cross1) ... Setting up libatomic1-ppc64el-cross (10.2.0-9cross1) ... Setting up librange-v3-dev (0.11.0-1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up linux-libc-dev-ppc64el-cross (5.7.6-1cross2) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.31-3) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libboost-system1.71.0:ppc64el (1.71.0-6+b2) ... Setting up libgcc-s1-ppc64el-cross (10.2.0-9cross1) ... Setting up cpp-10-powerpc64le-linux-gnu (10.2.0-9cross1) ... Setting up nlohmann-json3-dev (3.9.0-1) ... Setting up binutils-powerpc64le-linux-gnu (2.35.1-1) ... Setting up pandoc-data (2.9.2.1-1) ... Setting up libelf1:amd64 (0.181-1) ... Setting up readline-common (8.0-4) ... Setting up libxml2:amd64 (2.9.10+dfsg-6) ... 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Setting up libdpkg-perl (1.20.5) ... Setting up libstdc++6-ppc64el-cross (10.2.0-9cross1) ... Setting up autoconf (2.69-11.1) ... Setting up x11proto-xext-dev (2020.1-1) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up libpython3.8-stdlib:amd64 (3.8.6-1) ... Setting up python3.8 (3.8.6-1) ... Setting up libpython3-stdlib:amd64 (3.8.2-3) ... Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libubsan1-ppc64el-cross (10.2.0-9cross1) ... Setting up libdebhelper-perl (13.2.1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... 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Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-10-dev-ppc64el-cross (10.2.0-9cross1) ... Setting up libeigen3-dev (3.3.7-3) ... Setting up gcc-10-powerpc64le-linux-gnu (10.2.0-9cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up g++-10-powerpc64le-linux-gnu (10.2.0-9cross1) ... Setting up gcc-powerpc64le-linux-gnu (4:10.2.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-powerpc64le-linux-gnu (4:10.2.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-ppc64el (12.8) ... Setting up libcrypt1:ppc64el (1:4.4.17-1) ... Setting up libgcc-s1:ppc64el (10.2.0-9) ... Setting up dh-autoreconf (19) ... Setting up libc6:ppc64el (2.31-3) ... Setting up libsepol1:ppc64el (3.1-1) ... Setting up libcrypt-dev:ppc64el (1:4.4.17-1) ... Setting up libc6-dev:ppc64el (2.31-3) ... Setting up libbsd0:ppc64el (0.10.0-1) ... Setting up libblkid1:ppc64el (2.36-3+b1) ... Setting up libstdc++6:ppc64el (10.2.0-9) ... Setting up liblsan0:ppc64el (10.2.0-9) ... Setting up libitm1:ppc64el (10.2.0-9) ... Setting up libtsan0:ppc64el (10.2.0-9) ... Setting up libboost-program-options1.71.0:ppc64el (1.71.0-6+b2) ... Setting up libexpat1:ppc64el (2.2.9-1) ... Setting up libpixman-1-0:ppc64el (0.36.0-1) ... Setting up libice6:ppc64el (2:1.0.10-1) ... Setting up libxau6:ppc64el (1:1.0.8-1+b2) ... Setting up libxdmcp6:ppc64el (1:1.1.2-3) ... Setting up libxcb1:ppc64el (1.14-2) ... Setting up libpixman-1-dev:ppc64el (0.36.0-1) ... Setting up libxau-dev:ppc64el (1:1.0.8-1+b2) ... Setting up libpcre16-3:ppc64el (2:8.39-13) ... Setting up libice-dev:ppc64el (2:1.0.10-1) ... Setting up libxcb-render0:ppc64el (1.14-2) ... Setting up libbrotli1:ppc64el (1.0.9-2) ... Setting up libboost-chrono1.71.0:ppc64el (1.71.0-6+b2) ... Setting up libffi7:ppc64el (3.3-4) ... Setting up libsepol1-dev:ppc64el (3.1-1) ... Setting up liblzo2-2:ppc64el (2.10-2) ... Setting up debhelper (13.2.1) ... Setting up zlib1g:ppc64el (1:1.2.11.dfsg-2) ... Setting up libxcb-shm0:ppc64el (1.14-2) ... Setting up libgomp1:ppc64el (10.2.0-9) ... Setting up libboost-filesystem1.71.0:ppc64el (1.71.0-6+b2) ... Setting up libffi-dev:ppc64el (3.3-4) ... Setting up libpcre2-16-0:ppc64el (10.34-7) ... Setting up libasan5:ppc64el (9.3.0-18) ... Setting up libxdmcp-dev:ppc64el (1:1.1.2-3) ... Setting up libpcre3:ppc64el (2:8.39-13) ... Setting up libpcre2-32-0:ppc64el (10.34-7) ... Setting up libexpat1-dev:ppc64el (2.2.9-1) ... Setting up libquadmath0:ppc64el (10.2.0-9) ... Setting up libpng16-16:ppc64el (1.6.37-3) ... Setting up libpcre32-3:ppc64el (2:8.39-13) ... Setting up libatomic1:ppc64el (10.2.0-9) ... Setting up libuuid1:ppc64el (2.36-3+b1) ... Setting up libpcre2-8-0:ppc64el (10.34-7) ... Setting up libubsan1:ppc64el (10.2.0-9) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-2) ... Setting up libx11-6:ppc64el (2:1.6.12-1) ... Setting up libboost-random1.71.0:ppc64el (1.71.0-6+b2) ... Setting up libsm6:ppc64el (2:1.2.3-1) ... Setting up libbrotli-dev:ppc64el (1.0.9-2) ... Setting up libpcrecpp0v5:ppc64el (2:8.39-13) ... Setting up libxcb1-dev:ppc64el (1.14-2) ... Setting up libxrender1:ppc64el (1:0.9.10-1) ... Setting up libsm-dev:ppc64el (2:1.2.3-1) ... Setting up libpcre3-dev:ppc64el (2:8.39-13) ... Setting up libpng-dev:ppc64el (1.6.37-3) ... Setting up libx11-dev:ppc64el (2:1.6.12-1) ... Setting up libxext6:ppc64el (2:1.3.3-1+b2) ... Setting up libgcc-9-dev:ppc64el (9.3.0-18) ... Setting up libselinux1:ppc64el (3.1-2) ... Setting up libxcb-shm0-dev:ppc64el (1.14-2) ... Setting up libfreetype6:ppc64el (2.10.2+dfsg-3) ... Setting up uuid-dev:ppc64el (2.36-3+b1) ... Setting up libxcb-render0-dev:ppc64el (1.14-2) ... Setting up libpcre2-posix2:ppc64el (10.34-7) ... Setting up libxext-dev:ppc64el (2:1.3.3-1+b2) ... Setting up libmount1:ppc64el (2.36-3+b1) ... Setting up libfontconfig1:ppc64el (2.13.1-4.2) ... Setting up libxrender-dev:ppc64el (1:0.9.10-1) ... Setting up libblkid-dev:ppc64el (2.36-3+b1) ... Setting up libstdc++-9-dev:ppc64el (9.3.0-18) ... Setting up libpcre2-dev:ppc64el (10.34-7) ... Setting up libselinux1-dev:ppc64el (3.1-2) ... Setting up libglib2.0-0:ppc64el (2.66.0-2) ... /var/lib/dpkg/info/libglib2.0-0:ppc64el.postinst: 47: /usr/lib/powerpc64le-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:ppc64el.postinst: 50: /usr/lib/powerpc64le-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up libboost1.71-dev:ppc64el (1.71.0-6+b2) ... Setting up libcairo2:ppc64el (1.16.0-4) ... Setting up libfreetype-dev:ppc64el (2.10.2+dfsg-3) ... Setting up libboost-system1.71-dev:ppc64el (1.71.0-6+b2) ... Setting up libboost-random1.71-dev:ppc64el (1.71.0-6+b2) ... Setting up libboost-filesystem1.71-dev:ppc64el (1.71.0-6+b2) ... Setting up libcairo-gobject2:ppc64el (1.16.0-4) ... Setting up libboost-dev:ppc64el (1.71.0.3) ... Setting up libmount-dev:ppc64el (2.36-3+b1) ... Setting up libboost-filesystem-dev:ppc64el (1.71.0.3) ... Setting up libcairo-script-interpreter2:ppc64el (1.16.0-4) ... Setting up libboost-program-options1.71-dev:ppc64el (1.71.0-6+b2) ... Setting up libboost-chrono1.71-dev:ppc64el (1.71.0-6+b2) ... Setting up libboost-chrono-dev:ppc64el (1.71.0.3) ... Setting up libboost-system-dev:ppc64el (1.71.0.3) ... Setting up libboost-random-dev:ppc64el (1.71.0.3) ... Setting up libfreetype6-dev:ppc64el (2.10.2+dfsg-3) ... Setting up libglib2.0-dev:ppc64el (2.66.0-2) ... Setting up libboost-program-options-dev:ppc64el (1.71.0.3) ... Setting up libfontconfig-dev:ppc64el (2.13.1-4.2) ... Setting up libcairo2-dev:ppc64el (1.16.0-4) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Setting up libfontconfig1-dev:ppc64el (2.13.1-4.2) ... Processing triggers for libc-bin (2.31-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-10-amd64 #1 SMP Debian 4.19.132-1 (2020-07-24) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-1 dpkg-dev_1.20.5 g++-10_10.2.0-9 gcc-10_10.2.0-9 libc6-dev_2.31-3 libstdc++-10-dev_10.2.0-9 libstdc++-10-dev-ppc64el-cross_10.2.0-9cross1 libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-9 libstdc++6-ppc64el-cross_10.2.0-9cross1 linux-libc-dev_5.8.10-1 Package versions: adduser_3.118 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 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Hash: SHA256 Format: 3.0 (quilt) Source: bali-phy Binary: bali-phy Architecture: any Version: 3.5.0.2+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Benjamin Redelings Homepage: http://www.bali-phy.org Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/bali-phy Vcs-Git: https://salsa.debian.org/med-team/bali-phy.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), meson (>= 0.52), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev Package-List: bali-phy deb science optional arch=any Checksums-Sha1: 43d4ef7a5c0fde564da2450b8a09c9abf3b8676c 1099872 bali-phy_3.5.0.2+dfsg.orig.tar.xz 4ba2b71ecdc02b11329746e25e74c22ef7124632 4364 bali-phy_3.5.0.2+dfsg-1.debian.tar.xz Checksums-Sha256: 8d2b2dcb3b000534125f9fcab0136a263b239cd5f29c8bd067aef93ec9970788 1099872 bali-phy_3.5.0.2+dfsg.orig.tar.xz d61671796bf065e143f60b34bc95819557806aaf2cd53e0ed2e5240b687b11a0 4364 bali-phy_3.5.0.2+dfsg-1.debian.tar.xz Files: e846d2e3be317301a94c6edf25fb864f 1099872 bali-phy_3.5.0.2+dfsg.orig.tar.xz cbc87f96580a71ed9c48e5d11827b23e 4364 bali-phy_3.5.0.2+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl9t+8kRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG4lQ/8Cgr8LtIrWVY8T99Gyt2h57FZJUxKw/DA FJfcxRqO55wxfF4PQL7kwdN5D4kfrsJBAg8sJdf2zzC/h1+T67ZWuu5tJs0PFmmb KVC+nseLmD/FXkQzAbctCVch3Owthee/7C36In0HjootXPfkvQlBz6s2yDBVpT4N 6v+keo1HlrmeP4HEEdJJo0ZzHyvGY5/vDIRKLX5SECcTkmHo86sCOfa0kg4PEaN9 3EPIpfsSAseoCwKYiAWqGT5n6RYuEKrfnQ8+UPF7FD3rps7gjUPPPx/KqU7jrfMA EPcy43CdIJEms7J43TNwOSg5J6QXpTGrJg9JINUR46Q5S5EGEMOSQmDmOmDQRnFo eHJ85vWJtT3uDNbCVsd3DqZ8+xzADJJV0MYTt3KKzo/1+jCHY3MdMcTCQt4FqWeF WrJ/nWa8zxV7cabRMYMKtD+wq90sPV5wjqdAoStXZcr2np8MvMwpz+GnS+s9DYRr rQnoY7DGP/MMd2Lf5Nzzmi8Icb2JHO3NJy5JDUac26h2TvofUQ96qCDAbo0A35GY h3jtKI4P7Nl69QX3+V4hNJ/en4Ny+O4ltQ8NDnvZJY+tfgLz8rRqfKbvDFYXa2DB 4CHBWVu/YBdwYPGrcZ67xQ1ThZR28bw1bvqrxKgyJKXGuFVO9+hT2U1OOaYYyUBi nE6Qn6sHQjU= =8yWF -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.5kG2BcQp/trustedkeys.kbx': General error gpgv: Signature made Fri Sep 25 14:16:41 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bali-phy_3.5.0.2+dfsg-1.dsc dpkg-source: info: extracting bali-phy in /<> dpkg-source: info: unpacking bali-phy_3.5.0.2+dfsg.orig.tar.xz dpkg-source: info: unpacking bali-phy_3.5.0.2+dfsg-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-bc7655fa-fe57-45b1-987a-da153c942924 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package bali-phy dpkg-buildpackage: info: source version 3.5.0.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary-arch dh binary-arch --buildsystem=meson dh_update_autotools_config -a -O--buildsystem=meson dh_autoreconf -a -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -Dextra-tools=false --buildtype=release cd obj-powerpc64le-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/powerpc64le-linux-gnu --cross-file /<>/bali-phy-3.5.0.2\+dfsg/debian/.debhelper/generated/_source/meson-cross-file.conf -Dextra-tools=false --buildtype=release WARNING: Unknown CPU family powerpc64le, please report this at https://github.com/mesonbuild/meson/issues/new The Meson build system Version: 0.55.3 Source dir: /<> Build dir: /<>/obj-powerpc64le-linux-gnu Build type: cross build Project name: bali-phy Project version: 3.5.0.2 C compiler for the build machine: cc (gcc 10.2.0 "cc (Debian 10.2.0-9) 10.2.0") C linker for the build machine: cc ld.bfd 2.35.1 C++ compiler for the build machine: c++ (gcc 10.2.0 "c++ (Debian 10.2.0-9) 10.2.0") C++ linker for the build machine: c++ ld.bfd 2.35.1 Using 'CFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' C compiler for the host machine: /usr/bin/powerpc64le-linux-gnu-gcc (gcc 10.2.0 "powerpc64le-linux-gnu-gcc (Debian 10.2.0-9) 10.2.0") C linker for the host machine: /usr/bin/powerpc64le-linux-gnu-gcc ld.bfd 2.35.1 Using 'CXXFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' C++ compiler for the host machine: /usr/bin/powerpc64le-linux-gnu-g++ (gcc 10.2.0 "powerpc64le-linux-gnu-g++ (Debian 10.2.0-9) 10.2.0") C++ linker for the host machine: /usr/bin/powerpc64le-linux-gnu-g++ ld.bfd 2.35.1 Build machine cpu family: x86_64 Build machine cpu: x86_64 Host machine cpu family: powerpc64le Host machine cpu: ppc64el Target machine cpu family: powerpc64le Target machine cpu: ppc64el Has header "sys/resource.h" : YES Has header "fenv.h" : YES Checking for function "log2" : YES Checking for function "feenableexcept" : YES Configuring config.h using configuration Compiler for C++ supports arguments -Wno-sign-compare -Wsign-compare: YES Compiler for C++ supports arguments -Wno-maybe-uninitialized -Wmaybe-uninitialized: YES Compiler for C++ supports arguments -Woverloaded-virtual: YES Compiler for C++ supports arguments -Wstrict-aliasing: YES Compiler for C++ supports arguments -Wno-unknown-pragmas -Wunknown-pragmas: YES Compiler for C++ supports arguments -fdiagnostics-show-template-tree: YES Compiler for C++ supports arguments -funroll-loops: YES Compiler for C++ supports arguments -fno-math-errno: YES Compiler for C++ supports arguments -fno-signed-zeros: YES Run-time dependency threads found: YES Found pkg-config: /usr/bin/powerpc64le-linux-gnu-pkg-config (0.29.2) Run-time dependency cairo found: YES 1.16.0 Run-time dependency Boost (found: chrono, filesystem, program_options, random, system) found: YES 1.71.0 (/usr) Run-time dependency eigen3 found: YES 3.3.7 Has header "nlohmann/json.hpp" : YES Library dl found: YES Has header "range/v3/view/take.hpp" : YES Library m found: YES Program pandoc found: YES Program /<>/tests/run-tests.py found: YES Build targets in project: 86 bali-phy 3.5.0.2 Architecture host: linux Libraries BOOST: system Eigen: system nlohmann::json: system range v3: system cairo: system Directories prefix: /usr Configuration optimization: 3 debug: False Found ninja-1.10.1 at /usr/bin/ninja make[1]: Leaving directory '/<>' dh_auto_build -a -O--buildsystem=meson cd obj-powerpc64le-linux-gnu && LC_ALL=C.UTF-8 ninja -j1 -v [1/292] /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /<>/src @git_message@ '(.*)' /<>/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)' [2/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_pred.cc.o -MF src/util/libutil.a.p/string_pred.cc.o.d -o src/util/libutil.a.p/string_pred.cc.o -c ../src/util/string/pred.cc [3/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_sanitize.cc.o -MF src/util/libutil.a.p/string_sanitize.cc.o.d -o src/util/libutil.a.p/string_sanitize.cc.o -c ../src/util/string/sanitize.cc [4/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_strip.cc.o -MF src/util/libutil.a.p/string_strip.cc.o.d -o src/util/libutil.a.p/string_strip.cc.o -c ../src/util/string/strip.cc [5/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_split.cc.o -MF src/util/libutil.a.p/string_split.cc.o.d -o src/util/libutil.a.p/string_split.cc.o -c ../src/util/string/split.cc [6/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/log-level.cc.o -MF src/util/libutil.a.p/log-level.cc.o.d -o src/util/libutil.a.p/log-level.cc.o -c ../src/util/log-level.cc [7/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/io.cc.o -MF src/util/libutil.a.p/io.cc.o.d -o src/util/libutil.a.p/io.cc.o -c ../src/util/io.cc [8/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/range.cc.o -MF src/util/libutil.a.p/range.cc.o.d -o src/util/libutil.a.p/range.cc.o -c ../src/util/range.cc [9/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/demangle.cc.o -MF src/util/libutil.a.p/demangle.cc.o.d -o src/util/libutil.a.p/demangle.cc.o -c ../src/util/demangle.cc [10/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/mapping.cc.o -MF src/util/libutil.a.p/mapping.cc.o.d -o src/util/libutil.a.p/mapping.cc.o -c ../src/util/mapping.cc [11/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/cmdline.cc.o -MF src/util/libutil.a.p/cmdline.cc.o.d -o src/util/libutil.a.p/cmdline.cc.o -c ../src/util/cmdline.cc [12/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/rng.cc.o -MF src/util/libutil.a.p/rng.cc.o.d -o src/util/libutil.a.p/rng.cc.o -c ../src/util/rng.cc [13/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/permute.cc.o -MF src/util/libutil.a.p/permute.cc.o.d -o src/util/libutil.a.p/permute.cc.o -c ../src/util/permute.cc [14/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/file-paths.cc.o -MF src/util/libutil.a.p/file-paths.cc.o.d -o src/util/libutil.a.p/file-paths.cc.o -c ../src/util/file-paths.cc [15/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/ptree.cc.o -MF src/util/libutil.a.p/ptree.cc.o.d -o src/util/libutil.a.p/ptree.cc.o -c ../src/util/ptree.cc [16/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/text.cc.o -MF src/util/libutil.a.p/text.cc.o.d -o src/util/libutil.a.p/text.cc.o -c ../src/util/text.cc [17/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/myexception.cc.o -MF src/util/libutil.a.p/myexception.cc.o.d -o src/util/libutil.a.p/myexception.cc.o -c ../src/util/myexception.cc [18/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/time.cc.o -MF src/util/libutil.a.p/time.cc.o.d -o src/util/libutil.a.p/time.cc.o -c ../src/util/time.cc [19/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_newick-tokenizer.cc.o -MF src/libcommon.a.p/tree_newick-tokenizer.cc.o.d -o src/libcommon.a.p/tree_newick-tokenizer.cc.o -c ../src/tree/newick-tokenizer.cc [20/292] rm -f src/util/libutil.a && /usr/bin/powerpc64le-linux-gnu-ar csrD src/util/libutil.a src/util/libutil.a.p/string_pred.cc.o src/util/libutil.a.p/string_sanitize.cc.o src/util/libutil.a.p/string_strip.cc.o src/util/libutil.a.p/string_split.cc.o src/util/libutil.a.p/log-level.cc.o src/util/libutil.a.p/io.cc.o src/util/libutil.a.p/range.cc.o src/util/libutil.a.p/demangle.cc.o src/util/libutil.a.p/mapping.cc.o src/util/libutil.a.p/cmdline.cc.o src/util/libutil.a.p/rng.cc.o src/util/libutil.a.p/permute.cc.o src/util/libutil.a.p/file-paths.cc.o src/util/libutil.a.p/ptree.cc.o src/util/libutil.a.p/text.cc.o src/util/libutil.a.p/myexception.cc.o src/util/libutil.a.p/time.cc.o [21/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_sequencetree.cc.o -MF src/libcommon.a.p/tree_sequencetree.cc.o.d -o src/libcommon.a.p/tree_sequencetree.cc.o -c ../src/tree/sequencetree.cc In file included from ../src/tree/sequencetree.cc:26: ../src/util/include/util/mapping.H: In copy constructor ‘bad_mapping >::bad_mapping(const bad_mapping >&)’: ../src/util/include/util/mapping.H:12:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 12 | struct bad_mapping: public myexception | ^~~~~~~~~~~ [22/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_tree.cc.o -MF src/libcommon.a.p/tree_tree.cc.o.d -o src/libcommon.a.p/tree_tree.cc.o -c ../src/tree/tree.cc [23/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_tree-util.cc.o -MF src/libcommon.a.p/tree_tree-util.cc.o.d -o src/libcommon.a.p/tree_tree-util.cc.o -c ../src/tree/tree-util.cc [24/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_randomtree.cc.o -MF src/libcommon.a.p/tree_randomtree.cc.o.d -o src/libcommon.a.p/tree_randomtree.cc.o -c ../src/tree/randomtree.cc [25/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree-align_n_indels.cc.o -MF src/libcommon.a.p/tree-align_n_indels.cc.o.d -o src/libcommon.a.p/tree-align_n_indels.cc.o -c ../src/tree-align/n_indels.cc [26/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/sequence_alphabet.cc.o -MF src/libcommon.a.p/sequence_alphabet.cc.o.d -o src/libcommon.a.p/sequence_alphabet.cc.o -c ../src/sequence/alphabet.cc [27/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/sequence_sequence.cc.o -MF src/libcommon.a.p/sequence_sequence.cc.o.d -o src/libcommon.a.p/sequence_sequence.cc.o -c ../src/sequence/sequence.cc [28/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/sequence_sequence-format.cc.o -MF src/libcommon.a.p/sequence_sequence-format.cc.o.d -o src/libcommon.a.p/sequence_sequence-format.cc.o -c ../src/sequence/sequence-format.cc [29/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_read-trees.cc.o -MF src/libcommon.a.p/tools_read-trees.cc.o.d -o src/libcommon.a.p/tools_read-trees.cc.o -c ../src/tools/read-trees.cc In file included from ../src/tools/read-trees.cc:21: ../src/tools/read-trees.H: In member function ‘virtual trees_format::Last* trees_format::Last::clone() const’: ../src/tools/read-trees.H:152:11: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 152 | class Last: public wrapped_reader_t | ^~~~ [30/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment-util.cc.o -MF src/libcommon.a.p/alignment_alignment-util.cc.o.d -o src/libcommon.a.p/alignment_alignment-util.cc.o -c ../src/alignment/alignment-util.cc [31/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_load.cc.o -MF src/libcommon.a.p/alignment_load.cc.o.d -o src/libcommon.a.p/alignment_load.cc.o -c ../src/alignment/load.cc ../src/alignment/load.cc: In function ‘std::optional find_load_next_alignment(std::istream&, const string&)’: ../src/alignment/load.cc:210:21: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 210 | optional find_load_next_alignment(istream& ifile, const string& alph_name) | ^~~~~~~~~~~~~~~~~~~~~~~~ [32/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment.cc.o -MF src/libcommon.a.p/alignment_alignment.cc.o.d -o src/libcommon.a.p/alignment_alignment.cc.o -c ../src/alignment/alignment.cc [33/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment-random.cc.o -MF src/libcommon.a.p/alignment_alignment-random.cc.o.d -o src/libcommon.a.p/alignment_alignment-random.cc.o -c ../src/alignment/alignment-random.cc [34/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_index-matrix.cc.o -MF src/libcommon.a.p/alignment_index-matrix.cc.o.d -o src/libcommon.a.p/alignment_index-matrix.cc.o -c ../src/alignment/index-matrix.cc [35/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree-align_link.cc.o -MF src/libcommon.a.p/tree-align_link.cc.o.d -o src/libcommon.a.p/tree-align_link.cc.o -c ../src/tree-align/link.cc [36/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/models_path.cc.o -MF src/libcommon.a.p/models_path.cc.o.d -o src/libcommon.a.p/models_path.cc.o -c ../src/models/path.cc [37/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_statistics.cc.o -MF src/libcommon.a.p/tools_statistics.cc.o.d -o src/libcommon.a.p/tools_statistics.cc.o -c ../src/tools/statistics.cc ../src/tools/statistics.cc: In function ‘std::pair statistics::central_confidence_interval(const std::valarray&, double)’: ../src/tools/statistics.cc:132:90: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 132 | pair central_confidence_interval(const valarray& values,double P) | ^ [38/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_partition.cc.o -MF src/libcommon.a.p/tools_partition.cc.o.d -o src/libcommon.a.p/tools_partition.cc.o -c ../src/tools/partition.cc [39/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_tree-dist.cc.o -MF src/libcommon.a.p/tools_tree-dist.cc.o.d -o src/libcommon.a.p/tools_tree-dist.cc.o -c ../src/tools/tree-dist.cc [40/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_parsimony.cc.o -MF src/libcommon.a.p/tools_parsimony.cc.o.d -o src/libcommon.a.p/tools_parsimony.cc.o -c ../src/tools/parsimony.cc [41/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_mctree.cc.o -MF src/libcommon.a.p/tools_mctree.cc.o.d -o src/libcommon.a.p/tools_mctree.cc.o -c ../src/tools/mctree.cc In file included from ../src/tools/mctree.H:26, from ../src/tools/mctree.cc:20: ../src/util/include/util/matrix.H: In constructor ‘MC_tree::MC_tree(const PTree&)’: ../src/util/include/util/matrix.H:83:10: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 83 | size1_ = s1; | ~~~~~~~^~~~ [42/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_stats-table.cc.o -MF src/libcommon.a.p/tools_stats-table.cc.o.d -o src/libcommon.a.p/tools_stats-table.cc.o -c ../src/tools/stats-table.cc [43/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_findroot.cc.o -MF src/libcommon.a.p/tools_findroot.cc.o.d -o src/libcommon.a.p/tools_findroot.cc.o -c ../src/tools/findroot.cc [44/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_optimize.cc.o -MF src/libcommon.a.p/tools_optimize.cc.o.d -o src/libcommon.a.p/tools_optimize.cc.o -c ../src/tools/optimize.cc [45/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_distance-report.cc.o -MF src/libcommon.a.p/tools_distance-report.cc.o.d -o src/libcommon.a.p/tools_distance-report.cc.o -c ../src/tools/distance-report.cc ../src/tools/distance-report.cc: In function ‘void report_distances(const std::valarray&, const string&, boost::program_options::variables_map&)’: ../src/tools/distance-report.cc:35:75: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 35 | pair interval = central_confidence_interval(distances,P); | ^ [46/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_inverse.cc.o -MF src/libcommon.a.p/tools_inverse.cc.o.d -o src/libcommon.a.p/tools_inverse.cc.o -c ../src/tools/inverse.cc [47/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_joint-A-T.cc.o -MF src/libcommon.a.p/tools_joint-A-T.cc.o.d -o src/libcommon.a.p/tools_joint-A-T.cc.o -c ../src/tools/joint-A-T.cc [48/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_distance-methods.cc.o -MF src/libcommon.a.p/tools_distance-methods.cc.o.d -o src/libcommon.a.p/tools_distance-methods.cc.o -c ../src/tools/distance-methods.cc In file included from ../src/tools/distance-methods.H:24, from ../src/tools/distance-methods.cc:20: ../src/util/include/util/matrix.H: In function ‘Tree NJ(Matrix)’: ../src/util/include/util/matrix.H:83:10: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 83 | size1_ = s1; | ~~~~~~~^~~~ [49/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_consensus-tree.cc.o -MF src/libcommon.a.p/tools_consensus-tree.cc.o.d -o src/libcommon.a.p/tools_consensus-tree.cc.o -c ../src/tools/consensus-tree.cc [50/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/object.cc.o -MF src/computation/libcomputation.a.p/object.cc.o.d -o src/computation/libcomputation.a.p/object.cc.o -c ../src/computation/object.cc [51/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/closure.cc.o -MF src/computation/libcomputation.a.p/closure.cc.o.d -o src/computation/libcomputation.a.p/closure.cc.o -c ../src/computation/closure.cc [52/292] rm -f src/libcommon.a && /usr/bin/powerpc64le-linux-gnu-ar csrD src/libcommon.a src/libcommon.a.p/tree_newick-tokenizer.cc.o src/libcommon.a.p/tree_sequencetree.cc.o src/libcommon.a.p/tree_tree.cc.o src/libcommon.a.p/tree_tree-util.cc.o src/libcommon.a.p/tree_randomtree.cc.o src/libcommon.a.p/tree-align_n_indels.cc.o src/libcommon.a.p/sequence_alphabet.cc.o src/libcommon.a.p/sequence_sequence.cc.o src/libcommon.a.p/sequence_sequence-format.cc.o src/libcommon.a.p/tools_read-trees.cc.o src/libcommon.a.p/alignment_alignment-util.cc.o src/libcommon.a.p/alignment_load.cc.o src/libcommon.a.p/alignment_alignment.cc.o src/libcommon.a.p/alignment_alignment-random.cc.o src/libcommon.a.p/alignment_index-matrix.cc.o src/libcommon.a.p/tree-align_link.cc.o src/libcommon.a.p/models_path.cc.o src/libcommon.a.p/tools_statistics.cc.o src/libcommon.a.p/tools_partition.cc.o src/libcommon.a.p/tools_tree-dist.cc.o src/libcommon.a.p/tools_parsimony.cc.o src/libcommon.a.p/tools_mctree.cc.o src/libcommon.a.p/tools_stats-table.cc.o src/libcommon.a.p/tools_findroot.cc.o src/libcommon.a.p/tools_optimize.cc.o src/libcommon.a.p/tools_distance-report.cc.o src/libcommon.a.p/tools_inverse.cc.o src/libcommon.a.p/tools_joint-A-T.cc.o src/libcommon.a.p/tools_distance-methods.cc.o src/libcommon.a.p/tools_consensus-tree.cc.o [53/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/program.cc.o -MF src/computation/libcomputation.a.p/program.cc.o.d -o src/computation/libcomputation.a.p/program.cc.o -c ../src/computation/program.cc ../src/computation/program.cc: In member function ‘void Program::check_dependencies()’: ../src/computation/program.cc:155:10: warning: unused variable ‘index’ [-Wunused-variable] 155 | int index = find_module(name); | ^~~~~ In file included from ../src/computation/program.cc:2: ../src/computation/module.H: In copy constructor ‘Module::Module(const Module&)’: ../src/computation/module.H:76:7: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 76 | class Module | ^~~~~~ [54/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/preprocess.cc.o -MF src/computation/libcomputation.a.p/preprocess.cc.o.d -o src/computation/libcomputation.a.p/preprocess.cc.o -c ../src/computation/preprocess.cc [55/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/module.cc.o -MF src/computation/libcomputation.a.p/module.cc.o.d -o src/computation/libcomputation.a.p/module.cc.o -c ../src/computation/module.cc In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:72, from /usr/powerpc64le-linux-gnu/include/c++/10/functional:62, from /usr/powerpc64le-linux-gnu/include/c++/10/pstl/glue_algorithm_defs.h:13, from /usr/powerpc64le-linux-gnu/include/c++/10/algorithm:74, from /usr/powerpc64le-linux-gnu/include/c++/10/regex:38, from ../src/computation/module.cc:2: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const module_import&}; _Tp = module_import; _Alloc = std::allocator]’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:426:7: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [56/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/loader.cc.o -MF src/computation/libcomputation.a.p/loader.cc.o.d -o src/computation/libcomputation.a.p/loader.cc.o -c ../src/computation/loader.cc In file included from ../src/computation/loader.H:9, from ../src/computation/loader.cc:3: ../src/computation/module.H: In constructor ‘Module::Module(Module&&)’: ../src/computation/module.H:76:7: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 76 | class Module | ^~~~~~ [57/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/context.cc.o -MF src/computation/libcomputation.a.p/context.cc.o.d -o src/computation/libcomputation.a.p/context.cc.o -c ../src/computation/context.cc [58/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/operations.cc.o -MF src/computation/libcomputation.a.p/operations.cc.o.d -o src/computation/libcomputation.a.p/operations.cc.o -c ../src/computation/operations.cc [59/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/param.cc.o -MF src/computation/libcomputation.a.p/param.cc.o.d -o src/computation/libcomputation.a.p/param.cc.o -c ../src/computation/param.cc [60/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_desugar.cc.o -MF src/computation/libcomputation.a.p/parser_desugar.cc.o.d -o src/computation/libcomputation.a.p/parser_desugar.cc.o -c ../src/computation/parser/desugar.cc In file included from ../src/computation/module.H:9, from ../src/computation/parser/desugar.cc:1: ../src/computation/expression/var.H: In constructor ‘var::var(const string&, int)’: ../src/computation/expression/var.H:55:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 55 | var(const std::string& s,int i):index(i),name(s) {assert(name != "_");} | ^~~ [61/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_desugar-case.cc.o -MF src/computation/libcomputation.a.p/parser_desugar-case.cc.o.d -o src/computation/libcomputation.a.p/parser_desugar-case.cc.o -c ../src/computation/parser/desugar-case.cc [62/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_rename.cc.o -MF src/computation/libcomputation.a.p/parser_rename.cc.o.d -o src/computation/libcomputation.a.p/parser_rename.cc.o -c ../src/computation/parser/rename.cc [63/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_driver.cc.o -MF src/computation/libcomputation.a.p/parser_driver.cc.o.d -o src/computation/libcomputation.a.p/parser_driver.cc.o -c ../src/computation/parser/driver.cc [64/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_lexer.cc.o -MF src/computation/libcomputation.a.p/parser_lexer.cc.o.d -o src/computation/libcomputation.a.p/parser_lexer.cc.o -c ../src/computation/parser/lexer.cc [65/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_parser.cc.o -MF src/computation/libcomputation.a.p/parser_parser.cc.o.d -o src/computation/libcomputation.a.p/parser_parser.cc.o -c ../src/computation/parser/parser.cc [66/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_eigenvalue.cc.o -MF src/libbaliphy.a.p/math_eigenvalue.cc.o.d -o src/libbaliphy.a.p/math_eigenvalue.cc.o -c ../src/math/eigenvalue.cc [67/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_operator.cc.o -MF src/computation/libcomputation.a.p/expression_operator.cc.o.d -o src/computation/libcomputation.a.p/expression_operator.cc.o -c ../src/computation/expression/operator.cc [68/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_expression.cc.o -MF src/computation/libcomputation.a.p/expression_expression.cc.o.d -o src/computation/libcomputation.a.p/expression_expression.cc.o -c ../src/computation/expression/expression.cc [69/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_constructor.cc.o -MF src/computation/libcomputation.a.p/expression_constructor.cc.o.d -o src/computation/libcomputation.a.p/expression_constructor.cc.o -c ../src/computation/expression/constructor.cc [70/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_expression_ref.cc.o -MF src/computation/libcomputation.a.p/expression_expression_ref.cc.o.d -o src/computation/libcomputation.a.p/expression_expression_ref.cc.o -c ../src/computation/expression/expression_ref.cc [71/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_AST_node.cc.o -MF src/computation/libcomputation.a.p/expression_AST_node.cc.o.d -o src/computation/libcomputation.a.p/expression_AST_node.cc.o -c ../src/computation/expression/AST_node.cc [72/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_apply.cc.o -MF src/computation/libcomputation.a.p/expression_apply.cc.o.d -o src/computation/libcomputation.a.p/expression_apply.cc.o -c ../src/computation/expression/apply.cc [73/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_substitute.cc.o -MF src/computation/libcomputation.a.p/expression_substitute.cc.o.d -o src/computation/libcomputation.a.p/expression_substitute.cc.o -c ../src/computation/expression/substitute.cc [74/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_indexify.cc.o -MF src/computation/libcomputation.a.p/expression_indexify.cc.o.d -o src/computation/libcomputation.a.p/expression_indexify.cc.o -c ../src/computation/expression/indexify.cc ../src/computation/expression/indexify.cc: In function ‘var get_named_var(int)’: ../src/computation/expression/indexify.cc:28:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 28 | var get_named_var(int n) | ^~~~~~~~~~~~~ [75/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_let.cc.o -MF src/computation/libcomputation.a.p/expression_let.cc.o.d -o src/computation/libcomputation.a.p/expression_let.cc.o -c ../src/computation/expression/let.cc [76/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_case.cc.o -MF src/computation/libcomputation.a.p/expression_case.cc.o.d -o src/computation/libcomputation.a.p/expression_case.cc.o -c ../src/computation/expression/case.cc [77/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_trim.cc.o -MF src/computation/libcomputation.a.p/expression_trim.cc.o.d -o src/computation/libcomputation.a.p/expression_trim.cc.o -c ../src/computation/expression/trim.cc [78/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_tuple.cc.o -MF src/computation/libcomputation.a.p/expression_tuple.cc.o.d -o src/computation/libcomputation.a.p/expression_tuple.cc.o -c ../src/computation/expression/tuple.cc In file included from ../src/computation/expression/tuple.cc:3: ../src/computation/expression/var.H: In constructor ‘var::var(const string&, int)’: ../src/computation/expression/var.H:55:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 55 | var(const std::string& s,int i):index(i),name(s) {assert(name != "_");} | ^~~ [79/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_list.cc.o -MF src/computation/libcomputation.a.p/expression_list.cc.o.d -o src/computation/libcomputation.a.p/expression_list.cc.o -c ../src/computation/expression/list.cc [80/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_var.cc.o -MF src/computation/libcomputation.a.p/expression_var.cc.o.d -o src/computation/libcomputation.a.p/expression_var.cc.o -c ../src/computation/expression/var.cc ../src/computation/expression/var.cc: In function ‘var qualified_var(const string&)’: ../src/computation/expression/var.cc:193:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 193 | var qualified_var(const string& name) | ^~~~~~~~~~~~~ [81/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_lambda.cc.o -MF src/computation/libcomputation.a.p/expression_lambda.cc.o.d -o src/computation/libcomputation.a.p/expression_lambda.cc.o -c ../src/computation/expression/lambda.cc [82/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_random_variable.cc.o -MF src/computation/libcomputation.a.p/expression_random_variable.cc.o.d -o src/computation/libcomputation.a.p/expression_random_variable.cc.o -c ../src/computation/expression/random_variable.cc [83/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_modifiable.cc.o -MF src/computation/libcomputation.a.p/expression_modifiable.cc.o.d -o src/computation/libcomputation.a.p/expression_modifiable.cc.o -c ../src/computation/expression/modifiable.cc [84/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_reg_var.cc.o -MF src/computation/libcomputation.a.p/expression_reg_var.cc.o.d -o src/computation/libcomputation.a.p/expression_reg_var.cc.o -c ../src/computation/expression/reg_var.cc [85/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_bool.cc.o -MF src/computation/libcomputation.a.p/expression_bool.cc.o.d -o src/computation/libcomputation.a.p/expression_bool.cc.o -c ../src/computation/expression/bool.cc [86/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o -MF src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o.d -o src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o -c ../src/computation/expression/resolved_symbol.cc [87/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_maybe.cc.o -MF src/computation/libcomputation.a.p/expression_maybe.cc.o.d -o src/computation/libcomputation.a.p/expression_maybe.cc.o -c ../src/computation/expression/maybe.cc In file included from ../src/computation/expression/maybe.cc:2: ../src/computation/expression/var.H: In constructor ‘var::var(const string&, int)’: ../src/computation/expression/var.H:55:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 55 | var(const std::string& s,int i):index(i),name(s) {assert(name != "_");} | ^~~ [88/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_do_block.cc.o -MF src/computation/libcomputation.a.p/expression_do_block.cc.o.d -o src/computation/libcomputation.a.p/expression_do_block.cc.o -c ../src/computation/expression/do_block.cc [89/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_args.cc.o -MF src/computation/libcomputation.a.p/machine_args.cc.o.d -o src/computation/libcomputation.a.p/machine_args.cc.o -c ../src/computation/machine/args.cc [90/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_tokens.cc.o -MF src/computation/libcomputation.a.p/machine_tokens.cc.o.d -o src/computation/libcomputation.a.p/machine_tokens.cc.o -c ../src/computation/machine/tokens.cc [91/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_graph_register.cc.o -MF src/computation/libcomputation.a.p/machine_graph_register.cc.o.d -o src/computation/libcomputation.a.p/machine_graph_register.cc.o -c ../src/computation/machine/graph_register.cc ../src/computation/machine/graph_register.cc: In constructor ‘Step::Step(Step&&)’: ../src/computation/machine/graph_register.cc:155:1: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 155 | Step::Step(Step&& S) noexcept | ^~~~ [92/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_show_graph.cc.o -MF src/computation/libcomputation.a.p/machine_show_graph.cc.o.d -o src/computation/libcomputation.a.p/machine_show_graph.cc.o -c ../src/computation/machine/show_graph.cc [93/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_evaluate.cc.o -MF src/computation/libcomputation.a.p/machine_evaluate.cc.o.d -o src/computation/libcomputation.a.p/machine_evaluate.cc.o -c ../src/computation/machine/evaluate.cc ../src/computation/machine/evaluate.cc: In member function ‘virtual RegOperationArgs* RegOperationArgs::clone() const’: ../src/computation/machine/evaluate.cc:164:23: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 164 | RegOperationArgs* clone() const {return new RegOperationArgs(*this);} | ^~~~~ [94/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_sums.cc.o -MF src/computation/libcomputation.a.p/machine_sums.cc.o.d -o src/computation/libcomputation.a.p/machine_sums.cc.o -c ../src/computation/machine/sums.cc [95/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_gc.cc.o -MF src/computation/libcomputation.a.p/machine_gc.cc.o.d -o src/computation/libcomputation.a.p/machine_gc.cc.o -c ../src/computation/machine/gc.cc [96/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_reroot.cc.o -MF src/computation/libcomputation.a.p/machine_reroot.cc.o.d -o src/computation/libcomputation.a.p/machine_reroot.cc.o -c ../src/computation/machine/reroot.cc [97/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_effects.cc.o -MF src/computation/libcomputation.a.p/machine_effects.cc.o.d -o src/computation/libcomputation.a.p/machine_effects.cc.o -c ../src/computation/machine/effects.cc [98/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_free-vars.cc.o -MF src/computation/libcomputation.a.p/optimization_free-vars.cc.o.d -o src/computation/libcomputation.a.p/optimization_free-vars.cc.o -c ../src/computation/optimization/free-vars.cc In file included from ../external/immer/immer/detail/hamts/champ.hpp:12, from ../external/immer/immer/set.hpp:12, from ../src/computation/optimization/free-vars.H:6, from ../src/computation/optimization/free-vars.cc:1: ../external/immer/immer/detail/hamts/node.hpp: In function ‘immer::detail::hamts::champ::sub_result immer::detail::hamts::champ::do_sub(immer::detail::hamts::champ::node_t*, const K&, immer::detail::hamts::hash_t, immer::detail::hamts::shift_t) const [with K = var; T = var; Hash = std::hash; Equal = std::equal_to; MemoryPolicy = immer::memory_policy, immer::refcount_policy>; unsigned int B = 5]’: ../external/immer/immer/detail/hamts/node.hpp:389:40: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 389 | dst->impl.d.data.inner.nodemap = src->nodemap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [99/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_set-levels.cc.o -MF src/computation/libcomputation.a.p/optimization_set-levels.cc.o.d -o src/computation/libcomputation.a.p/optimization_set-levels.cc.o -c ../src/computation/optimization/set-levels.cc ../src/computation/optimization/set-levels.cc: In member function ‘var let_floater_state::new_unique_var(const string&, int)’: ../src/computation/optimization/set-levels.cc:73:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 73 | var let_floater_state::new_unique_var(const string& name, int level) | ^~~~~~~~~~~~~~~~~ [100/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_float-out.cc.o -MF src/computation/libcomputation.a.p/optimization_float-out.cc.o.d -o src/computation/libcomputation.a.p/optimization_float-out.cc.o -c ../src/computation/optimization/float-out.cc [101/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_occurrence.cc.o -MF src/computation/libcomputation.a.p/optimization_occurrence.cc.o.d -o src/computation/libcomputation.a.p/optimization_occurrence.cc.o -c ../src/computation/optimization/occurrence.cc In file included from /usr/powerpc64le-linux-gnu/include/c++/10/list:63, from ../src/computation/optimization/occurrence.cc:3: /usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_list.h: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >, boost::adjacency_list >}; _Tp = std::pair, boost::adjacency_list >; _Alloc = std::allocator, boost::adjacency_list > >]’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_list.h:151:32: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 151 | this->_M_next = this->_M_prev = this; | ~~~~~~~~~~~~~~^~~~~~ [102/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_inliner.cc.o -MF src/computation/libcomputation.a.p/optimization_inliner.cc.o.d -o src/computation/libcomputation.a.p/optimization_inliner.cc.o -c ../src/computation/optimization/inliner.cc [103/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_simplifier.cc.o -MF src/computation/libcomputation.a.p/optimization_simplifier.cc.o.d -o src/computation/libcomputation.a.p/optimization_simplifier.cc.o -c ../src/computation/optimization/simplifier.cc [104/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp_hmm.cc.o -MF src/libbaliphy.a.p/dp_dp_hmm.cc.o.d -o src/libbaliphy.a.p/dp_dp_hmm.cc.o -c ../src/dp/dp_hmm.cc ../src/dp/dp_hmm.cc: In constructor ‘dp_HMM::dp_HMM(const HMM&)’: ../src/dp/dp_hmm.cc:248:1: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 248 | dp_HMM::dp_HMM(const HMM& H) | ^~~~~~ [105/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-engine.cc.o -MF src/libbaliphy.a.p/dp_dp-engine.cc.o.d -o src/libbaliphy.a.p/dp_dp-engine.cc.o -c ../src/dp/dp-engine.cc [106/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-array.cc.o -MF src/libbaliphy.a.p/dp_dp-array.cc.o.d -o src/libbaliphy.a.p/dp_dp-array.cc.o -c ../src/dp/dp-array.cc [107/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_hmm.cc.o -MF src/libbaliphy.a.p/dp_hmm.cc.o.d -o src/libbaliphy.a.p/dp_hmm.cc.o -c ../src/dp/hmm.cc [108/292] rm -f src/computation/libcomputation.a && /usr/bin/powerpc64le-linux-gnu-ar csrD src/computation/libcomputation.a src/computation/libcomputation.a.p/object.cc.o src/computation/libcomputation.a.p/closure.cc.o src/computation/libcomputation.a.p/program.cc.o src/computation/libcomputation.a.p/preprocess.cc.o src/computation/libcomputation.a.p/module.cc.o src/computation/libcomputation.a.p/loader.cc.o src/computation/libcomputation.a.p/context.cc.o src/computation/libcomputation.a.p/operations.cc.o src/computation/libcomputation.a.p/param.cc.o src/computation/libcomputation.a.p/parser_desugar.cc.o src/computation/libcomputation.a.p/parser_desugar-case.cc.o src/computation/libcomputation.a.p/parser_rename.cc.o src/computation/libcomputation.a.p/parser_driver.cc.o src/computation/libcomputation.a.p/parser_lexer.cc.o src/computation/libcomputation.a.p/parser_parser.cc.o src/computation/libcomputation.a.p/expression_operator.cc.o src/computation/libcomputation.a.p/expression_expression.cc.o src/computation/libcomputation.a.p/expression_constructor.cc.o src/computation/libcomputation.a.p/expression_expression_ref.cc.o src/computation/libcomputation.a.p/expression_AST_node.cc.o src/computation/libcomputation.a.p/expression_apply.cc.o src/computation/libcomputation.a.p/expression_substitute.cc.o src/computation/libcomputation.a.p/expression_indexify.cc.o src/computation/libcomputation.a.p/expression_let.cc.o src/computation/libcomputation.a.p/expression_case.cc.o src/computation/libcomputation.a.p/expression_trim.cc.o src/computation/libcomputation.a.p/expression_tuple.cc.o src/computation/libcomputation.a.p/expression_list.cc.o src/computation/libcomputation.a.p/expression_var.cc.o src/computation/libcomputation.a.p/expression_lambda.cc.o src/computation/libcomputation.a.p/expression_random_variable.cc.o src/computation/libcomputation.a.p/expression_modifiable.cc.o src/computation/libcomputation.a.p/expression_reg_var.cc.o src/computation/libcomputation.a.p/expression_bool.cc.o src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o src/computation/libcomputation.a.p/expression_maybe.cc.o src/computation/libcomputation.a.p/expression_do_block.cc.o src/computation/libcomputation.a.p/machine_args.cc.o src/computation/libcomputation.a.p/machine_tokens.cc.o src/computation/libcomputation.a.p/machine_graph_register.cc.o src/computation/libcomputation.a.p/machine_show_graph.cc.o src/computation/libcomputation.a.p/machine_evaluate.cc.o src/computation/libcomputation.a.p/machine_sums.cc.o src/computation/libcomputation.a.p/machine_gc.cc.o src/computation/libcomputation.a.p/machine_reroot.cc.o src/computation/libcomputation.a.p/machine_effects.cc.o src/computation/libcomputation.a.p/optimization_free-vars.cc.o src/computation/libcomputation.a.p/optimization_set-levels.cc.o src/computation/libcomputation.a.p/optimization_float-out.cc.o src/computation/libcomputation.a.p/optimization_occurrence.cc.o src/computation/libcomputation.a.p/optimization_inliner.cc.o src/computation/libcomputation.a.p/optimization_simplifier.cc.o [109/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-matrix.cc.o -MF src/libbaliphy.a.p/dp_dp-matrix.cc.o.d -o src/libbaliphy.a.p/dp_dp-matrix.cc.o -c ../src/dp/dp-matrix.cc [110/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-cube.cc.o -MF src/libbaliphy.a.p/dp_dp-cube.cc.o.d -o src/libbaliphy.a.p/dp_dp-cube.cc.o -c ../src/dp/dp-cube.cc [111/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_2way.cc.o -MF src/libbaliphy.a.p/dp_2way.cc.o.d -o src/libbaliphy.a.p/dp_2way.cc.o -c ../src/dp/2way.cc [112/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_3way.cc.o -MF src/libbaliphy.a.p/dp_3way.cc.o.d -o src/libbaliphy.a.p/dp_3way.cc.o -c ../src/dp/3way.cc [113/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_5way.cc.o -MF src/libbaliphy.a.p/dp_5way.cc.o.d -o src/libbaliphy.a.p/dp_5way.cc.o -c ../src/dp/5way.cc In file included from ../src/dp/5way.H:31, from ../src/dp/5way.cc:26: ../src/dp/hmm.H: In function ‘HMM A5::get_HMM(const data_partition&, const A5::hmm_order&)’: ../src/dp/hmm.H:40:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 40 | class HMM { | ^~~ [114/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_alignment-sums.cc.o -MF src/libbaliphy.a.p/dp_alignment-sums.cc.o.d -o src/libbaliphy.a.p/dp_alignment-sums.cc.o -c ../src/dp/alignment-sums.cc [115/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_mcmc.cc.o -MF src/libbaliphy.a.p/mcmc_mcmc.cc.o.d -o src/libbaliphy.a.p/mcmc_mcmc.cc.o -c ../src/mcmc/mcmc.cc In file included from ../src/mcmc/mcmc.cc:31: ../src/mcmc/mcmc.H: In member function ‘virtual MCMC::Integer_Random_Variable_Slice_Move* MCMC::Integer_Random_Variable_Slice_Move::clone() const’: ../src/mcmc/mcmc.H:320:38: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 320 | Integer_Random_Variable_Slice_Move* clone() const {return new Integer_Random_Variable_Slice_Move(*this);} | ^~~~~ [116/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_proposals.cc.o -MF src/libbaliphy.a.p/mcmc_proposals.cc.o.d -o src/libbaliphy.a.p/mcmc_proposals.cc.o -c ../src/mcmc/proposals.cc [117/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_slice-sampling.cc.o -MF src/libbaliphy.a.p/mcmc_slice-sampling.cc.o.d -o src/libbaliphy.a.p/mcmc_slice-sampling.cc.o -c ../src/mcmc/slice-sampling.cc ../src/mcmc/slice-sampling.cc: In function ‘std::pair find_slice_boundaries_stepping_out(double, slice_function&, double, double, int)’: ../src/mcmc/slice-sampling.cc:373:91: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 373 | find_slice_boundaries_stepping_out(double x0,slice_function& g,double logy, double w,int m) | ^ [118/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_AIS.cc.o -MF src/libbaliphy.a.p/mcmc_AIS.cc.o.d -o src/libbaliphy.a.p/mcmc_AIS.cc.o -c ../src/mcmc/AIS.cc [119/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_logger.cc.o -MF src/libbaliphy.a.p/mcmc_logger.cc.o.d -o src/libbaliphy.a.p/mcmc_logger.cc.o -c ../src/mcmc/logger.cc [120/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_moves.cc.o -MF src/libbaliphy.a.p/mcmc_moves.cc.o.d -o src/libbaliphy.a.p/mcmc_moves.cc.o -c ../src/mcmc/moves.cc [121/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o -MF src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o -c ../src/mcmc/sample-branch-lengths.cc [122/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-alignment.cc.o -MF src/libbaliphy.a.p/mcmc_sample-alignment.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-alignment.cc.o -c ../src/mcmc/sample-alignment.cc In file included from /usr/powerpc64le-linux-gnu/include/c++/10/bits/shared_ptr.h:52, from /usr/powerpc64le-linux-gnu/include/c++/10/memory:84, from /usr/include/boost/system/detail/std_interoperability.hpp:12, from /usr/include/boost/system/error_code.hpp:959, from /usr/include/boost/filesystem/path_traits.hpp:22, from /usr/include/boost/filesystem/path.hpp:26, from /usr/include/boost/filesystem.hpp:16, from ../src/models/parameters.H:32, from ../src/mcmc/sample-alignment.H:4, from ../src/mcmc/sample-alignment.cc:20: /usr/powerpc64le-linux-gnu/include/c++/10/bits/shared_ptr_base.h: In function ‘log_double_t sample_alignment(Parameters&, int)’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/shared_ptr_base.h:763:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 763 | _M_pi = __tmp; | ~~~~~~^~~~~~~ [123/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o -MF src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o -c ../src/mcmc/sample-topology-SPR.cc In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:72, from /usr/powerpc64le-linux-gnu/include/c++/10/functional:62, from /usr/powerpc64le-linux-gnu/include/c++/10/pstl/glue_algorithm_defs.h:13, from /usr/powerpc64le-linux-gnu/include/c++/10/algorithm:74, from ../src/dp/2way.H:24, from ../src/mcmc/sample-topology-SPR.cc:26: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple, std::allocator > > >, std::allocator, std::allocator > > > > > >}; _Tp = std::tuple, std::allocator > > >, std::allocator, std::allocator > > > > > >; _Alloc = std::allocator, std::allocator > > >, std::allocator, std::allocator > > > > > > >]’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:109:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 109 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [124/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o -MF src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o -c ../src/mcmc/sample-topology-NNI.cc [125/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o -MF src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o -c ../src/mcmc/sample-two-nodes.cc In file included from /usr/powerpc64le-linux-gnu/include/c++/10/bits/shared_ptr.h:52, from /usr/powerpc64le-linux-gnu/include/c++/10/memory:84, from /usr/include/boost/dynamic_bitset_fwd.hpp:15, from /usr/include/boost/dynamic_bitset/dynamic_bitset.hpp:43, from /usr/include/boost/dynamic_bitset.hpp:15, from ../src/tree/tree.H:32, from ../src/mcmc/sample.H:23, from ../src/mcmc/sample-two-nodes.cc:29: /usr/powerpc64le-linux-gnu/include/c++/10/bits/shared_ptr_base.h: In function ‘int sample_two_nodes_multi(std::vector&, const std::vector&, const std::vector&, bool, bool)’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/shared_ptr_base.h:763:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 763 | _M_pi = __tmp; | ~~~~~~^~~~~~~ [126/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-node.cc.o -MF src/libbaliphy.a.p/mcmc_sample-node.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-node.cc.o -c ../src/mcmc/sample-node.cc In file included from /usr/powerpc64le-linux-gnu/include/c++/10/bits/shared_ptr.h:52, from /usr/powerpc64le-linux-gnu/include/c++/10/memory:84, from /usr/include/boost/dynamic_bitset_fwd.hpp:15, from /usr/include/boost/dynamic_bitset/dynamic_bitset.hpp:43, from /usr/include/boost/dynamic_bitset.hpp:15, from ../src/tree/tree.H:32, from ../src/mcmc/sample.H:23, from ../src/mcmc/sample-node.cc:28: /usr/powerpc64le-linux-gnu/include/c++/10/bits/shared_ptr_base.h: In function ‘int sample_node_multi(std::vector&, const std::vector >&, const std::vector&, bool, bool)’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/shared_ptr_base.h:763:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 763 | _M_pi = __tmp; | ~~~~~~^~~~~~~ [127/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-cube.cc.o -MF src/libbaliphy.a.p/mcmc_sample-cube.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-cube.cc.o -c ../src/mcmc/sample-cube.cc [128/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-tri.cc.o -MF src/libbaliphy.a.p/mcmc_sample-tri.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-tri.cc.o -c ../src/mcmc/sample-tri.cc [129/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_setup.cc.o -MF src/libbaliphy.a.p/mcmc_setup.cc.o.d -o src/libbaliphy.a.p/mcmc_setup.cc.o -c ../src/mcmc/setup.cc [130/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/substitution_substitution.cc.o -MF src/libbaliphy.a.p/substitution_substitution.cc.o.d -o src/libbaliphy.a.p/substitution_substitution.cc.o -c ../src/substitution/substitution.cc [131/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-thin.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-thin.p/tools_alignment-thin.cc.o -MF src/alignment-thin.p/tools_alignment-thin.cc.o.d -o src/alignment-thin.p/tools_alignment-thin.cc.o -c ../src/tools/alignment-thin.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/alignment/load.H:8, from ../src/tools/alignment-thin.cc:26: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [132/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/substitution_parsimony.cc.o -MF src/libbaliphy.a.p/substitution_parsimony.cc.o.d -o src/libbaliphy.a.p/substitution_parsimony.cc.o -c ../src/substitution/parsimony.cc [133/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_exponential.cc.o -MF src/libbaliphy.a.p/math_exponential.cc.o.d -o src/libbaliphy.a.p/math_exponential.cc.o -c ../src/math/exponential.cc [134/292] /usr/bin/meson --internal exe --capture doc/tree-tool.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-tool.md [135/292] /usr/bin/meson --internal exe --capture doc/alignment-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-distances.md [136/292] /usr/bin/meson --internal exe --capture doc/alignment-draw.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-draw.md [137/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_pow2.cc.o -MF src/libbaliphy.a.p/math_pow2.cc.o.d -o src/libbaliphy.a.p/math_pow2.cc.o -c ../src/math/pow2.cc [138/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_parameters.cc.o -MF src/libbaliphy.a.p/models_parameters.cc.o.d -o src/libbaliphy.a.p/models_parameters.cc.o -c ../src/models/parameters.cc In file included from ../src/computation/module.H:9, from ../src/models/model.H:37, from ../src/models/parameters.H:43, from ../src/models/parameters.cc:31: ../src/computation/expression/var.H: In function ‘var::var(const string&, int)’: ../src/computation/expression/var.H:55:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 55 | var(const std::string& s,int i):index(i),name(s) {assert(name != "_");} | ^~~ [139/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_site-compression.cc.o -MF src/libbaliphy.a.p/models_site-compression.cc.o.d -o src/libbaliphy.a.p/models_site-compression.cc.o -c ../src/models/site-compression.cc [140/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_TreeInterface.cc.o -MF src/libbaliphy.a.p/models_TreeInterface.cc.o.d -o src/libbaliphy.a.p/models_TreeInterface.cc.o -c ../src/models/TreeInterface.cc [141/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_setup.cc.o -MF src/libbaliphy.a.p/models_setup.cc.o.d -o src/libbaliphy.a.p/models_setup.cc.o -c ../src/models/setup.cc In file included from ../src/computation/module.H:9, from ../src/models/setup.cc:91: ../src/computation/expression/var.H: In function ‘var::var(const string&, int)’: ../src/computation/expression/var.H:55:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 55 | var(const std::string& s,int i):index(i),name(s) {assert(name != "_");} | ^~~ [142/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_rules.cc.o -MF src/libbaliphy.a.p/models_rules.cc.o.d -o src/libbaliphy.a.p/models_rules.cc.o -c ../src/models/rules.cc In file included from /usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_algobase.h:67, from /usr/powerpc64le-linux-gnu/include/c++/10/vector:60, from ../src/models/rules.cc:1: /usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_iterator.h: In function ‘ptree json_to_ptree(const json&)’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_iterator.h:954:23: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 954 | : _M_current(__i) { } | ^ [143/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_parse.cc.o -MF src/libbaliphy.a.p/models_parse.cc.o.d -o src/libbaliphy.a.p/models_parse.cc.o -c ../src/models/parse.cc [144/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_translate.cc.o -MF src/libbaliphy.a.p/models_translate.cc.o.d -o src/libbaliphy.a.p/models_translate.cc.o -c ../src/models/translate.cc [145/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_unification.cc.o -MF src/libbaliphy.a.p/models_unification.cc.o.d -o src/libbaliphy.a.p/models_unification.cc.o -c ../src/models/unification.cc [146/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_model.cc.o -MF src/libbaliphy.a.p/models_model.cc.o.d -o src/libbaliphy.a.p/models_model.cc.o -c ../src/models/model.cc [147/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tree-align_link2.cc.o -MF src/libbaliphy.a.p/tree-align_link2.cc.o.d -o src/libbaliphy.a.p/tree-align_link2.cc.o -c ../src/tree-align/link2.cc [148/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/probability_choose.cc.o -MF src/libbaliphy.a.p/probability_choose.cc.o.d -o src/libbaliphy.a.p/probability_choose.cc.o -c ../src/probability/choose.cc [149/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/probability_probability.cc.o -MF src/libbaliphy.a.p/probability_probability.cc.o.d -o src/libbaliphy.a.p/probability_probability.cc.o -c ../src/probability/probability.cc In file included from ../src/probability/probability.cc:22: /usr/include/boost/math/special_functions/gamma.hpp: In instantiation of ‘boost::math::detail::upper_incomplete_gamma_fract::result_type boost::math::detail::upper_incomplete_gamma_fract::operator()() [with T = long double; boost::math::detail::upper_incomplete_gamma_fract::result_type = std::pair]’: /usr/include/boost/math/tools/fraction.hpp:216:20: required from ‘typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double; typename boost::math::tools::detail::fraction_traits::result_type = long double; uintmax_t = long unsigned int]’ /usr/include/boost/math/tools/fraction.hpp:251:31: required from ‘typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double; typename boost::math::tools::detail::fraction_traits::result_type = long double]’ /usr/include/boost/math/special_functions/gamma.hpp:320:68: required from ‘T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = long double]’ /usr/include/boost/math/special_functions/gamma.hpp:1109:44: required from ‘T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = long double; Policy = boost::math::policies::policy, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’ /usr/include/boost/math/special_functions/gamma.hpp:2041:35: required from ‘typename boost::math::tools::promote_args::type boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = boost::math::policies::policy; typename boost::math::tools::promote_args::type = double]’ /usr/include/boost/math/special_functions/gamma.hpp:2049:18: required from ‘typename boost::math::tools::promote_args::type boost::math::gamma_p(RT1, RT2) [with RT1 = double; RT2 = double; typename boost::math::tools::promote_args::type = double]’ ../src/probability/probability.cc:348:35: required from here /usr/include/boost/math/special_functions/gamma.hpp:305:16: note: parameter passing for argument of type ‘boost::math::detail::upper_incomplete_gamma_fract::result_type’ {aka ‘std::pair’} when C++17 is enabled changed to match C++14 in GCC 10.1 305 | result_type operator()() | ^~~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/igamma_inverse.hpp:16, from /usr/include/boost/math/special_functions/gamma.hpp:2127, from ../src/probability/probability.cc:22: /usr/include/boost/math/tools/roots.hpp: In function ‘T boost::math::tools::newton_raphson_iterate(F, T, T, T, int) [with F = boost::math::detail::temme_root_finder; T = long double]’: /usr/include/boost/math/tools/roots.hpp:333:10: note: the ABI of passing aggregates with 16-byte alignment has changed in GCC 5 333 | inline T newton_raphson_iterate(F f, T guess, T min, T max, int digits) BOOST_NOEXCEPT_IF(BOOST_MATH_IS_FLOAT(T) && noexcept(std::declval()(std::declval()))) | ^~~~~~~~~~~~~~~~~~~~~~ [150/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/imodel_imodel.cc.o -MF src/libbaliphy.a.p/imodel_imodel.cc.o.d -o src/libbaliphy.a.p/imodel_imodel.cc.o -c ../src/imodel/imodel.cc ../src/imodel/imodel.cc: In member function ‘virtual indel::PairHMM SimpleIndelModel::get_branch_HMM(double) const’: ../src/imodel/imodel.cc:387:16: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 387 | indel::PairHMM SimpleIndelModel::get_branch_HMM(double) const | ^~~~~~~~~~~~~~~~ [151/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -MF src/libbaliphy.a.p/alignment_alignment-constraint.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -c ../src/alignment/alignment-constraint.cc [152/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-util2.cc.o -MF src/libbaliphy.a.p/alignment_alignment-util2.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-util2.cc.o -c ../src/alignment/alignment-util2.cc [153/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tree-align_n_indels2.cc.o -MF src/libbaliphy.a.p/tree-align_n_indels2.cc.o.d -o src/libbaliphy.a.p/tree-align_n_indels2.cc.o -c ../src/tree-align/n_indels2.cc [154/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tools_parsimony2.cc.o -MF src/libbaliphy.a.p/tools_parsimony2.cc.o.d -o src/libbaliphy.a.p/tools_parsimony2.cc.o -c ../src/tools/parsimony2.cc [155/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/version.cc.o -MF src/libbaliphy.a.p/version.cc.o.d -o src/libbaliphy.a.p/version.cc.o -c ../src/version.cc ../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 67 | s<<__DATE__<<" "<<__TIME__; | ^~~~~~~~ ../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 67 | s<<__DATE__<<" "<<__TIME__; | ^~~~~~~~ [156/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Data.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Data.so.p/Data.cc.o -MF src/builtins/Data.so.p/Data.cc.o.d -o src/builtins/Data.so.p/Data.cc.o -c ../src/builtins/Data.cc [157/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/link-partitions.cc.o -MF src/bali-phy/bali-phy.p/link-partitions.cc.o.d -o src/bali-phy/bali-phy.p/link-partitions.cc.o -c ../src/bali-phy/link-partitions.cc [158/292] rm -f src/libbaliphy.a && /usr/bin/powerpc64le-linux-gnu-ar csrD src/libbaliphy.a src/libbaliphy.a.p/dp_dp_hmm.cc.o src/libbaliphy.a.p/dp_hmm.cc.o src/libbaliphy.a.p/dp_dp-engine.cc.o src/libbaliphy.a.p/dp_dp-array.cc.o src/libbaliphy.a.p/dp_dp-matrix.cc.o src/libbaliphy.a.p/dp_dp-cube.cc.o src/libbaliphy.a.p/dp_2way.cc.o src/libbaliphy.a.p/dp_3way.cc.o src/libbaliphy.a.p/dp_5way.cc.o src/libbaliphy.a.p/dp_alignment-sums.cc.o src/libbaliphy.a.p/mcmc_mcmc.cc.o src/libbaliphy.a.p/mcmc_proposals.cc.o src/libbaliphy.a.p/mcmc_slice-sampling.cc.o src/libbaliphy.a.p/mcmc_AIS.cc.o src/libbaliphy.a.p/mcmc_logger.cc.o src/libbaliphy.a.p/mcmc_moves.cc.o src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o src/libbaliphy.a.p/mcmc_sample-alignment.cc.o src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o src/libbaliphy.a.p/mcmc_sample-node.cc.o src/libbaliphy.a.p/mcmc_sample-cube.cc.o src/libbaliphy.a.p/mcmc_sample-tri.cc.o src/libbaliphy.a.p/mcmc_setup.cc.o src/libbaliphy.a.p/substitution_substitution.cc.o src/libbaliphy.a.p/substitution_parsimony.cc.o src/libbaliphy.a.p/math_exponential.cc.o src/libbaliphy.a.p/math_eigenvalue.cc.o src/libbaliphy.a.p/math_pow2.cc.o src/libbaliphy.a.p/models_parameters.cc.o src/libbaliphy.a.p/models_site-compression.cc.o src/libbaliphy.a.p/models_TreeInterface.cc.o src/libbaliphy.a.p/models_setup.cc.o src/libbaliphy.a.p/models_rules.cc.o src/libbaliphy.a.p/models_parse.cc.o src/libbaliphy.a.p/models_translate.cc.o src/libbaliphy.a.p/models_unification.cc.o src/libbaliphy.a.p/models_model.cc.o src/libbaliphy.a.p/tree-align_link2.cc.o src/libbaliphy.a.p/probability_choose.cc.o src/libbaliphy.a.p/probability_probability.cc.o src/libbaliphy.a.p/imodel_imodel.cc.o src/libbaliphy.a.p/alignment_alignment-constraint.cc.o src/libbaliphy.a.p/alignment_alignment-util2.cc.o src/libbaliphy.a.p/tree-align_n_indels2.cc.o src/libbaliphy.a.p/tools_parsimony2.cc.o src/libbaliphy.a.p/version.cc.o [159/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/bali-phy.cc.o -MF src/bali-phy/bali-phy.p/bali-phy.cc.o.d -o src/bali-phy/bali-phy.p/bali-phy.cc.o -c ../src/bali-phy/bali-phy.cc ../src/bali-phy/bali-phy.cc: In function ‘void report_mem()’: ../src/bali-phy/bali-phy.cc:122:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 122 | system(cmd.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from ../src/computation/module.H:9, from ../src/models/model.H:37, from ../src/models/parameters.H:43, from ../src/bali-phy/bali-phy.cc:57: ../src/computation/expression/var.H: In constructor ‘var::var(const string&, int)’: ../src/computation/expression/var.H:55:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 55 | var(const std::string& s,int i):index(i),name(s) {assert(name != "_");} | ^~~ [160/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/help.cc.o -MF src/bali-phy/bali-phy.p/help.cc.o.d -o src/bali-phy/bali-phy.p/help.cc.o -c ../src/bali-phy/help.cc [161/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/A-T-model.cc.o -MF src/bali-phy/bali-phy.p/A-T-model.cc.o.d -o src/bali-phy/bali-phy.p/A-T-model.cc.o -c ../src/bali-phy/A-T-model.cc In file included from ../src/bali-phy/A-T-model.cc:32: ../src/util/include/util/mapping.H: In copy constructor ‘bad_mapping >::bad_mapping(const bad_mapping >&)’: ../src/util/include/util/mapping.H:12:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 12 | struct bad_mapping: public myexception | ^~~~~~~~~~~ [162/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/files.cc.o -MF src/bali-phy/bali-phy.p/files.cc.o.d -o src/bali-phy/bali-phy.p/files.cc.o -c ../src/bali-phy/files.cc In file included from /usr/powerpc64le-linux-gnu/include/c++/10/bits/shared_ptr.h:52, from /usr/powerpc64le-linux-gnu/include/c++/10/memory:84, from /usr/include/boost/system/detail/std_interoperability.hpp:12, from /usr/include/boost/system/error_code.hpp:959, from /usr/include/boost/filesystem/path_traits.hpp:22, from /usr/include/boost/filesystem/path.hpp:26, from /usr/include/boost/filesystem/operations.hpp:25, from ../src/bali-phy/files.cc:1: /usr/powerpc64le-linux-gnu/include/c++/10/bits/shared_ptr_base.h: In function ‘std::vector > > open_files(int, const string&, std::vector >&)’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/shared_ptr_base.h:763:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 763 | _M_pi = __tmp; | ~~~~~~^~~~~~~ [163/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/loggers.cc.o -MF src/bali-phy/bali-phy.p/loggers.cc.o.d -o src/bali-phy/bali-phy.p/loggers.cc.o -c ../src/bali-phy/loggers.cc [164/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/system.cc.o -MF src/bali-phy/bali-phy.p/system.cc.o.d -o src/bali-phy/bali-phy.p/system.cc.o -c ../src/bali-phy/system.cc [165/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/cmd_line.cc.o -MF src/bali-phy/bali-phy.p/cmd_line.cc.o.d -o src/bali-phy/bali-phy.p/cmd_line.cc.o -c ../src/bali-phy/cmd_line.cc In file included from /usr/include/boost/program_options.hpp:15, from ../src/bali-phy/cmd_line.H:6, from ../src/bali-phy/cmd_line.cc:4: /usr/include/boost/program_options/options_description.hpp: In copy constructor ‘boost::program_options::options_description::options_description(const boost::program_options::options_description&)’: /usr/include/boost/program_options/options_description.hpp:191:38: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 191 | class BOOST_PROGRAM_OPTIONS_DECL options_description { | ^~~~~~~~~~~~~~~~~~~ [166/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/paths.cc.o -MF src/bali-phy/bali-phy.p/paths.cc.o.d -o src/bali-phy/bali-phy.p/paths.cc.o -c ../src/bali-phy/paths.cc [167/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/bali-phy/bali-phy src/bali-phy/bali-phy.p/link-partitions.cc.o src/bali-phy/bali-phy.p/bali-phy.cc.o src/bali-phy/bali-phy.p/help.cc.o src/bali-phy/bali-phy.p/A-T-model.cc.o src/bali-phy/bali-phy.p/files.cc.o src/bali-phy/bali-phy.p/loggers.cc.o src/bali-phy/bali-phy.p/system.cc.o src/bali-phy/bali-phy.p/cmd_line.cc.o src/bali-phy/bali-phy.p/paths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-export-dynamic -Wl,--whole-archive -Wl,--start-group src/util/libutil.a src/libcommon.a src/computation/libcomputation.a src/libbaliphy.a -Wl,--no-whole-archive -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -ldl -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [168/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Array.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Array.so.p/Array.cc.o -MF src/builtins/Array.so.p/Array.cc.o.d -o src/builtins/Array.so.p/Array.cc.o -c ../src/builtins/Array.cc [169/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Array.so src/builtins/Array.so.p/Array.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [170/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Data.so src/builtins/Data.so.p/Data.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [171/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Prelude.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Prelude.so.p/Prelude.cc.o -MF src/builtins/Prelude.so.p/Prelude.cc.o.d -o src/builtins/Prelude.so.p/Prelude.cc.o -c ../src/builtins/Prelude.cc [172/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Prelude.so src/builtins/Prelude.so.p/Prelude.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [173/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Alphabet.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Alphabet.so.p/Alphabet.cc.o -MF src/builtins/Alphabet.so.p/Alphabet.cc.o.d -o src/builtins/Alphabet.so.p/Alphabet.cc.o -c ../src/builtins/Alphabet.cc [174/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Alphabet.so src/builtins/Alphabet.so.p/Alphabet.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [175/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Pair.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Pair.so.p/Pair.cc.o -MF src/builtins/Pair.so.p/Pair.cc.o.d -o src/builtins/Pair.so.p/Pair.cc.o -c ../src/builtins/Pair.cc [176/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Pair.so src/builtins/Pair.so.p/Pair.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [177/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Modifiables.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Modifiables.so.p/Modifiables.cc.o -MF src/builtins/Modifiables.so.p/Modifiables.cc.o.d -o src/builtins/Modifiables.so.p/Modifiables.cc.o -c ../src/builtins/Modifiables.cc [178/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Modifiables.so src/builtins/Modifiables.so.p/Modifiables.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [179/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Alignment.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Alignment.so.p/Alignment.cc.o -MF src/builtins/Alignment.so.p/Alignment.cc.o.d -o src/builtins/Alignment.so.p/Alignment.cc.o -c ../src/builtins/Alignment.cc ../src/builtins/Alignment.cc: In function ‘closure builtin_function_reorder_alignment(OperationArgs&)’: ../src/builtins/Alignment.cc:466:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 466 | extern "C" closure builtin_function_reorder_alignment(OperationArgs& Args) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [180/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Alignment.so src/builtins/Alignment.so.p/Alignment.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [181/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/PopGen.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/PopGen.so.p/PopGen.cc.o -MF src/builtins/PopGen.so.p/PopGen.cc.o.d -o src/builtins/PopGen.so.p/PopGen.cc.o -c ../src/builtins/PopGen.cc [182/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/PopGen.so src/builtins/PopGen.so.p/PopGen.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [183/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Distribution.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Distribution.so.p/Distribution.cc.o -MF src/builtins/Distribution.so.p/Distribution.cc.o.d -o src/builtins/Distribution.so.p/Distribution.cc.o -c ../src/builtins/Distribution.cc [184/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Distribution.so src/builtins/Distribution.so.p/Distribution.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [185/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Range.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Range.so.p/Range.cc.o -MF src/builtins/Range.so.p/Range.cc.o.d -o src/builtins/Range.so.p/Range.cc.o -c ../src/builtins/Range.cc [186/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Range.so src/builtins/Range.so.p/Range.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [187/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/SModel.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/SModel.so.p/SModel.cc.o -MF src/builtins/SModel.so.p/SModel.cc.o.d -o src/builtins/SModel.so.p/SModel.cc.o -c ../src/builtins/SModel.cc [188/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/SModel.so src/builtins/SModel.so.p/SModel.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [189/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/MCMC.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/MCMC.so.p/MCMC.cc.o -MF src/builtins/MCMC.so.p/MCMC.cc.o.d -o src/builtins/MCMC.so.p/MCMC.cc.o -c ../src/builtins/MCMC.cc [190/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/MCMC.so src/builtins/MCMC.so.p/MCMC.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [191/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Vector.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Vector.so.p/Vector.cc.o -MF src/builtins/Vector.so.p/Vector.cc.o.d -o src/builtins/Vector.so.p/Vector.cc.o -c ../src/builtins/Vector.cc [192/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Vector.so src/builtins/Vector.so.p/Vector.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [193/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Environment.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Environment.so.p/Environment.cc.o -MF src/builtins/Environment.so.p/Environment.cc.o.d -o src/builtins/Environment.so.p/Environment.cc.o -c ../src/builtins/Environment.cc [194/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Environment.so src/builtins/Environment.so.p/Environment.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [195/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/SMC.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/SMC.so.p/SMC.cc.o -MF src/builtins/SMC.so.p/SMC.cc.o.d -o src/builtins/SMC.so.p/SMC.cc.o -c ../src/builtins/SMC.cc [196/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/SMC.so src/builtins/SMC.so.p/SMC.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [197/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Real.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Real.so.p/Real.cc.o -MF src/builtins/Real.so.p/Real.cc.o.d -o src/builtins/Real.so.p/Real.cc.o -c ../src/builtins/Real.cc [198/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Real.so src/builtins/Real.so.p/Real.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Real.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [199/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Bits.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Bits.so.p/Bits.cc.o -MF src/builtins/Bits.so.p/Bits.cc.o.d -o src/builtins/Bits.so.p/Bits.cc.o -c ../src/builtins/Bits.cc [200/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Bits.so src/builtins/Bits.so.p/Bits.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Bits.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [201/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Foreign.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Foreign.so.p/Foreign.cc.o -MF src/builtins/Foreign.so.p/Foreign.cc.o.d -o src/builtins/Foreign.so.p/Foreign.cc.o -c ../src/builtins/Foreign.cc [202/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Foreign.so src/builtins/Foreign.so.p/Foreign.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Foreign.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [203/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/builtins/Text.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Text.so.p/Text.cc.o -MF src/builtins/Text.so.p/Text.cc.o.d -o src/builtins/Text.so.p/Text.cc.o -c ../src/builtins/Text.cc [204/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/builtins/Text.so src/builtins/Text.so.p/Text.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Text.so -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -Wl,--end-group [205/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/model_P.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/model_P.p/tools_model_P.cc.o -MF src/model_P.p/tools_model_P.cc.o.d -o src/model_P.p/tools_model_P.cc.o -c ../src/tools/model_P.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/tools/model_P.cc:30: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [206/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/statreport.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/statreport.p/tools_statreport.cc.o -MF src/statreport.p/tools_statreport.cc.o.d -o src/statreport.p/tools_statreport.cc.o -c ../src/tools/statreport.cc ../src/tools/statreport.cc: In function ‘void show_mode(const string&, const std::vector >&, int, const std::vector&, bool)’: ../src/tools/statreport.cc:300:24: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 300 | auto m = mode(total); | ^ In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/tools/statreport.cc:40: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [207/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/model_P src/model_P.p/tools_model_P.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [208/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/stats-select.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/stats-select.p/tools_stats-select.cc.o -MF src/stats-select.p/tools_stats-select.cc.o.d -o src/stats-select.p/tools_stats-select.cc.o -c ../src/tools/stats-select.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/tools/stats-select.cc:32: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [209/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/statreport src/statreport.p/tools_statreport.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [210/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/stats-select src/stats-select.p/tools_stats-select.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [211/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-gild.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-gild.p/tools_alignment-gild.cc.o -MF src/alignment-gild.p/tools_alignment-gild.cc.o.d -o src/alignment-gild.p/tools_alignment-gild.cc.o -c ../src/tools/alignment-gild.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/alignment/load.H:8, from ../src/tools/alignment-gild.cc:28: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [212/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignment-gild src/alignment-gild.p/tools_alignment-gild.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [213/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-consensus.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-consensus.p/tools_alignment-consensus.cc.o -MF src/alignment-consensus.p/tools_alignment-consensus.cc.o.d -o src/alignment-consensus.p/tools_alignment-consensus.cc.o -c ../src/tools/alignment-consensus.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/alignment/load.H:8, from ../src/tools/alignment-consensus.cc:32: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [214/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignment-consensus src/alignment-consensus.p/tools_alignment-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [215/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-max.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-max.p/tools_alignment-max.cc.o -MF src/alignment-max.p/tools_alignment-max.cc.o.d -o src/alignment-max.p/tools_alignment-max.cc.o -c ../src/tools/alignment-max.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/alignment/load.H:8, from ../src/tools/alignment-max.cc:31: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [216/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignment-max src/alignment-max.p/tools_alignment-max.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [217/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-chop-internal.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -MF src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o.d -o src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -c ../src/tools/alignment-chop-internal.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/tree/tree-util.H:22, from ../src/tools/alignment-chop-internal.cc:26: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [218/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-info.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-info.p/tools_alignment-info.cc.o -MF src/alignment-info.p/tools_alignment-info.cc.o.d -o src/alignment-info.p/tools_alignment-info.cc.o -c ../src/tools/alignment-info.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/alignment/load.H:8, from ../src/tools/alignment-info.cc:27: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [219/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignment-chop-internal src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [220/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-indices.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-indices.p/tools_alignment-indices.cc.o -MF src/alignment-indices.p/tools_alignment-indices.cc.o.d -o src/alignment-indices.p/tools_alignment-indices.cc.o -c ../src/tools/alignment-indices.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/alignment/load.H:8, from ../src/tools/alignment-indices.cc:23: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [221/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignment-indices src/alignment-indices.p/tools_alignment-indices.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [222/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignment-info src/alignment-info.p/tools_alignment-info.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [223/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-cat.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-cat.p/tools_alignment-cat.cc.o -MF src/alignment-cat.p/tools_alignment-cat.cc.o.d -o src/alignment-cat.p/tools_alignment-cat.cc.o -c ../src/tools/alignment-cat.cc In file included from ../src/tools/alignment-cat.cc:28: ../src/util/include/util/mapping.H: In copy constructor ‘bad_mapping >::bad_mapping(const bad_mapping >&)’: ../src/util/include/util/mapping.H:12:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 12 | struct bad_mapping: public myexception | ^~~~~~~~~~~ [224/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-find.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-find.p/tools_alignment-find.cc.o -MF src/alignment-find.p/tools_alignment-find.cc.o.d -o src/alignment-find.p/tools_alignment-find.cc.o -c ../src/tools/alignment-find.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/alignment/load.H:8, from ../src/tools/alignment-find.cc:25: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [225/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignment-cat src/alignment-cat.p/tools_alignment-cat.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [226/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-translate.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-translate.p/tools_alignment-translate.cc.o -MF src/alignment-translate.p/tools_alignment-translate.cc.o.d -o src/alignment-translate.p/tools_alignment-translate.cc.o -c ../src/tools/alignment-translate.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/tools/alignment-translate.cc:25: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [227/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignment-translate src/alignment-translate.p/tools_alignment-translate.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [228/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignment-find src/alignment-find.p/tools_alignment-find.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [229/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/trees-consensus.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-consensus.p/tools_trees-consensus.cc.o -MF src/trees-consensus.p/tools_trees-consensus.cc.o.d -o src/trees-consensus.p/tools_trees-consensus.cc.o -c ../src/tools/trees-consensus.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/util/include/util/cmdline.H:8, from ../src/tools/trees-consensus.cc:36: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [230/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/trees-consensus src/trees-consensus.p/tools_trees-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [231/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/tree-mean-lengths.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -MF src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o.d -o src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -c ../src/tools/tree-mean-lengths.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/tree/tree-util.H:22, from ../src/tools/tree-mean-lengths.cc:25: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [232/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/tree-mean-lengths src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [233/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/mctree-mean-lengths.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -MF src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o.d -o src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -c ../src/tools/mctree-mean-lengths.cc In file included from ../src/tools/mctree-mean-lengths.cc:27: ../src/tools/mctree.H: In copy constructor ‘MC_tree::MC_tree(const MC_tree&)’: ../src/tools/mctree.H:60:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 60 | struct MC_tree | ^~~~~~~ [234/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/mctree-mean-lengths src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [235/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/trees-to-SRQ.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -MF src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o.d -o src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -c ../src/tools/trees-to-SRQ.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/tools/tree-dist.H:28, from ../src/tools/trees-to-SRQ.cc:30: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [236/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/trees-to-SRQ src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [237/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/pickout.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/pickout.p/tools_pickout.cc.o -MF src/pickout.p/tools_pickout.cc.o.d -o src/pickout.p/tools_pickout.cc.o -c ../src/tools/pickout.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/tools/pickout.cc:28: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [238/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/pickout src/pickout.p/tools_pickout.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [239/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/cut-range.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/cut-range.p/tools_cut-range.cc.o -MF src/cut-range.p/tools_cut-range.cc.o.d -o src/cut-range.p/tools_cut-range.cc.o -c ../src/tools/cut-range.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/tools/cut-range.cc:29: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [240/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/cut-range src/cut-range.p/tools_cut-range.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [241/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/trees-distances.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-distances.p/tools_trees-distances.cc.o -MF src/trees-distances.p/tools_trees-distances.cc.o.d -o src/trees-distances.p/tools_trees-distances.cc.o -c ../src/tools/trees-distances.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/util/include/util/cmdline.H:8, from ../src/tools/trees-distances.cc:35: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [242/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/trees-distances src/trees-distances.p/tools_trees-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [243/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignment-thin src/alignment-thin.p/tools_alignment-thin.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [244/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignments-diff.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignments-diff.p/tools_alignments-diff.cc.o -MF src/alignments-diff.p/tools_alignments-diff.cc.o.d -o src/alignments-diff.p/tools_alignments-diff.cc.o -c ../src/tools/alignments-diff.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/alignment/load.H:8, from ../src/tools/alignments-diff.cc:31: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [245/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignments-diff src/alignments-diff.p/tools_alignments-diff.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [246/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/tree-tool.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/tree-tool.p/tools_tree-tool.cc.o -MF src/tree-tool.p/tools_tree-tool.cc.o.d -o src/tree-tool.p/tools_tree-tool.cc.o -c ../src/tools/tree-tool.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/tree/tree-util.H:22, from ../src/tools/tree-tool.cc:26: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [247/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-draw.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-draw.p/tools_alignment-draw.cc.o -MF src/alignment-draw.p/tools_alignment-draw.cc.o.d -o src/alignment-draw.p/tools_alignment-draw.cc.o -c ../src/tools/alignment-draw.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/tools/alignment-draw.cc:33: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [248/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/tree-tool src/tree-tool.p/tools_tree-tool.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [249/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-distances.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-distances.p/tools_alignment-distances.cc.o -MF src/alignment-distances.p/tools_alignment-distances.cc.o.d -o src/alignment-distances.p/tools_alignment-distances.cc.o -c ../src/tools/alignment-distances.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/alignment/load.H:8, from ../src/tools/alignment-distances.cc:31: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [250/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignment-distances src/alignment-distances.p/tools_alignment-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [251/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/alignment-draw.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-draw.p/tools_colors.cc.o -MF src/alignment-draw.p/tools_colors.cc.o.d -o src/alignment-draw.p/tools_colors.cc.o -c ../src/tools/colors.cc [252/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/alignment-draw src/alignment-draw.p/tools_alignment-draw.cc.o src/alignment-draw.p/tools_colors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [253/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/trees-bootstrap.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-bootstrap.p/tools_trees-bootstrap.cc.o -MF src/trees-bootstrap.p/tools_trees-bootstrap.cc.o.d -o src/trees-bootstrap.p/tools_trees-bootstrap.cc.o -c ../src/tools/trees-bootstrap.cc ../src/tools/trees-bootstrap.cc: In function ‘std::pair am_sdsf(const tree_sample_collection&, int, const std::map, p_counts>&, double)’: ../src/tools/trees-bootstrap.cc:567:117: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 567 | am_sdsf(const tree_sample_collection& tree_dists, int d, const map, p_counts>& counts, double min_f) | ^ In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:72, from /usr/powerpc64le-linux-gnu/include/c++/10/functional:62, from /usr/powerpc64le-linux-gnu/include/c++/10/pstl/glue_algorithm_defs.h:13, from /usr/powerpc64le-linux-gnu/include/c++/10/algorithm:74, from ../src/tools/trees-bootstrap.cc:35: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_default_append(std::vector<_Tp, _Alloc>::size_type) [with _Tp = var_stats; _Alloc = std::allocator]’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:611:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 611 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [254/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/trees-bootstrap.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-bootstrap.p/tools_bootstrap.cc.o -MF src/trees-bootstrap.p/tools_bootstrap.cc.o.d -o src/trees-bootstrap.p/tools_bootstrap.cc.o -c ../src/tools/bootstrap.cc [255/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/trees-bootstrap src/trees-bootstrap.p/tools_trees-bootstrap.cc.o src/trees-bootstrap.p/tools_bootstrap.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [256/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/draw-tree.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/powerpc64le-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/draw-tree.p/tools_draw-tree.cc.o -MF src/draw-tree.p/tools_draw-tree.cc.o.d -o src/draw-tree.p/tools_draw-tree.cc.o -c ../src/tools/draw-tree.cc ../src/tools/draw-tree.cc: In function ‘MC_tree_with_lengths collapse_MC_tree(const MC_tree_with_lengths&)’: ../src/tools/draw-tree.cc:3351:10: warning: unused variable ‘right1’ [-Wunused-variable] 3351 | int right1 = MC1.mapping[b1]; | ^~~~~~ ../src/tools/draw-tree.cc: In constructor ‘graph_layout::graph_layout(graph_layout&&)’: ../src/tools/draw-tree.cc:1653:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1653 | struct graph_layout: public common_layout | ^~~~~~~~~~~~ [257/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/draw-tree src/draw-tree.p/tools_draw-tree.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm /usr/lib/powerpc64le-linux-gnu/libcairo.so -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [258/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/extract-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/extract-ancestors.p/tools_extract-ancestors.cc.o -MF src/extract-ancestors.p/tools_extract-ancestors.cc.o.d -o src/extract-ancestors.p/tools_extract-ancestors.cc.o -c ../src/tools/extract-ancestors.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/util/include/util/cmdline.H:8, from ../src/tools/extract-ancestors.cc:30: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [259/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/extract-ancestors src/extract-ancestors.p/tools_extract-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [260/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/summarize-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -MF src/summarize-ancestors.p/tools_summarize-ancestors.cc.o.d -o src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -c ../src/tools/summarize-ancestors.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/util/include/util/cmdline.H:8, from ../src/tools/summarize-ancestors.cc:30: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [261/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/summarize-ancestors src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [262/292] /usr/bin/powerpc64le-linux-gnu-g++ -Isrc/bali-subsample.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-subsample.p/tools_subsample.cc.o -MF src/bali-subsample.p/tools_subsample.cc.o.d -o src/bali-subsample.p/tools_subsample.cc.o -c ../src/tools/subsample.cc In file included from /usr/include/boost/program_options/parsers.hpp:295, from /usr/include/boost/program_options.hpp:17, from ../src/tools/subsample.cc:24: /usr/include/boost/program_options/detail/parsers.hpp: In member function ‘boost::program_options::basic_parsed_options boost::program_options::basic_command_line_parser::run() [with charT = char]’: /usr/include/boost/program_options/detail/parsers.hpp:90:5: note: the layout of aggregates containing vectors with 2-byte alignment has changed in GCC 5 90 | basic_command_line_parser::run() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [263/292] /usr/bin/powerpc64le-linux-gnu-g++ -o src/bali-subsample src/bali-subsample.p/tools_subsample.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/powerpc64le-linux-gnu/libboost_random.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_chrono.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_filesystem.so.1.71.0 /usr/lib/powerpc64le-linux-gnu/libboost_system.so.1.71.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [264/292] /usr/bin/meson --internal exe --capture doc/bali-phy.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy.md [265/292] /usr/bin/meson --internal exe --capture doc/model_P.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/model_P.md [266/292] /usr/bin/meson --internal exe --capture doc/statreport.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/statreport.md [267/292] /usr/bin/meson --internal exe --capture doc/stats-select.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/stats-select.md [268/292] /usr/bin/meson --internal exe --capture doc/alignment-gild.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-gild.md [269/292] /usr/bin/meson --internal exe --capture doc/alignment-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-consensus.md [270/292] /usr/bin/meson --internal exe --capture doc/alignment-max.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-max.md [271/292] /usr/bin/meson --internal exe --capture doc/alignment-chop-internal.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-chop-internal.md [272/292] /usr/bin/meson --internal exe --capture doc/alignment-indices.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-indices.md [273/292] /usr/bin/meson --internal exe --capture doc/alignment-info.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-info.md [274/292] /usr/bin/meson --internal exe --capture doc/alignment-cat.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-cat.md [275/292] /usr/bin/meson --internal exe --capture doc/alignment-translate.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-translate.md [276/292] /usr/bin/meson --internal exe --capture doc/alignment-find.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-find.md [277/292] /usr/bin/meson --internal exe --capture doc/trees-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-consensus.md [278/292] /usr/bin/meson --internal exe --capture doc/tree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-mean-lengths.md [279/292] /usr/bin/meson --internal exe --capture doc/mctree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/mctree-mean-lengths.md [280/292] /usr/bin/meson --internal exe --capture doc/trees-to-SRQ.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-to-SRQ.md [281/292] /usr/bin/meson --internal exe --capture doc/pickout.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/pickout.md [282/292] /usr/bin/meson --internal exe --capture doc/cut-range.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/cut-range.md [283/292] /usr/bin/meson --internal exe --capture doc/trees-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-distances.md [284/292] /usr/bin/meson --internal exe --capture doc/alignment-thin.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-thin.md [285/292] /usr/bin/meson --internal exe --capture doc/alignments-diff.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignments-diff.md [286/292] /usr/bin/meson --internal exe --capture doc/trees-bootstrap.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-bootstrap.md [287/292] /usr/bin/meson --internal exe --capture doc/draw-tree.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/draw-tree.md [288/292] /usr/bin/meson --internal exe --capture doc/extract-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/extract-ancestors.md [289/292] /usr/bin/meson --internal exe --capture doc/summarize-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/summarize-ancestors.md [290/292] /usr/bin/meson --internal exe --capture doc/bali-subsample.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-subsample.md [291/292] /usr/bin/meson --internal exe --capture doc/bp-analyze.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bp-analyze.md [292/292] /usr/bin/meson --internal exe --capture doc/bali-phy-pkg.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy-pkg.md dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=meson" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=meson dh_prep -a -O--buildsystem=meson dh_auto_install -a -O--buildsystem=meson cd obj-powerpc64le-linux-gnu && DESTDIR=/<>/bali-phy-3.5.0.2\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install [1/5] Generating git-version.h with a custom command [1/2] Installing files. Installing subdir /<>/haskell to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/Tree.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/SModel.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/SMC.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/Range.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/Probability.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/Prelude.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/PopGen.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/Parameters.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/MCMC.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/IModel.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/haskell/System/Environment.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/System Installing /<>/haskell/SModel/ReversibleMarkov.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/haskell/SModel/Nucleotides.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/haskell/SModel/Likelihood.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/haskell/SModel/Frequency.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/haskell/SModel/Doublets.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/haskell/SModel/Codons.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/haskell/Probability/Random.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability Installing /<>/haskell/Probability/Distribution/Uniform.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Tree.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/RandomAlignment.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Poisson.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Normal.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Mixture.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/List.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Laplace.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Geometric.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Gamma.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/FakeDist.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Exponential.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/ExpTransform.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Discrete.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/DirichletProcess.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Dirichlet.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Cauchy.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Categorical.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Binomial.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Beta.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Probability/Distribution/Bernoulli.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/haskell/Foreign/Vector.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /<>/haskell/Foreign/String.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /<>/haskell/Foreign/Pair.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /<>/haskell/Foreign/Introspection.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /<>/haskell/Data/Tuple.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Text.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Set.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/ReadFile.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Ord.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Maybe.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Matrix.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Map.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/List.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/JSON.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Ix.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Function.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Eq.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Either.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Bool.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/BitVector.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Data/Array.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/haskell/Control/Monad.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Control Installing /<>/haskell/Compiler/ST.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/haskell/Compiler/Real.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/haskell/Compiler/Num.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/haskell/Compiler/IO.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/haskell/Compiler/Enum.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/haskell/Compiler/Base.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/haskell/Bio/Sequence.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Bio Installing /<>/haskell/Bio/Alphabet.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Bio Installing /<>/haskell/Bio/Alignment.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Bio Installing /<>/haskell/Bio/Alignment/Pairwise.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment Installing /<>/haskell/Bio/Alignment/Matrix.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment Installing /<>/haskell/BAliPhy/ATModel.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy Installing /<>/haskell/BAliPhy/ATModel/DataPartition.hs to /<>/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy/ATModel Installing subdir /<>/bindings to /<>/debian/bali-phy/usr/lib/bali-phy/bindings Installing /<>/bindings/models/x3x3.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/x3_sym.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/x3.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/x2x2.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/x2_sym.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/x2.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/wag_freq.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/wag.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/tn93_sym.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/tn93.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/sample.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/rs07_relaxed_rates.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/rs07.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/rs05.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/rna_16a.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/pam.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/mut_sel_aa.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/mut_sel.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/multi_rate.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/multiMixtureModel.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/mixture.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/mg94k.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/mg94_ext.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/mg94.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m8a_test.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m8a.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m8.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m7.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m3_test.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m3.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m2a_test.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m2a.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/m1a.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/lg08_freq.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/lg08.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/k80.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/jtt.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/jc69.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/inv.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/hky85_sym.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/hky85.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/gy94_ext.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/gy94.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/gwF.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/gtr_sym.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/gtr.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/get_q.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/fe.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/fMutSel0.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/fMutSel.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/f81.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/f61.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/f3x4.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/f1x4.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/f.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/equ.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/empirical.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/density.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/dNdS.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/branch_site.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bindings/models/Rates/log_normal.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /<>/bindings/models/Rates/gamma.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /<>/bindings/models/Rates/free.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /<>/bindings/models/Frequencies/uniform.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Frequencies Installing /<>/bindings/models/Covarion/wang07.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /<>/bindings/models/Covarion/ts98.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /<>/bindings/models/Covarion/huelsenbeck02.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /<>/bindings/models/Covarion/galtier01.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /<>/bindings/functions/zipWith.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/zip.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/unit_mixture.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/uniform_discretize.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/tan.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/take.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/sub.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/standard_code.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/sqrt.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/sin.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/rna.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/replicate.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/quantile.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/num_branches.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/mul.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/map.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/log.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/letters.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/letter_pairs.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/length.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/intToDouble.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/getNucleotides.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/getAminoAcids.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/getAlphabet.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/exp.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/dna.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/div.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/cos.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/codons.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/add.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/aa.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bindings/functions/constructors/Pair.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors Installing /<>/bindings/functions/constructors/Nil.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors Installing /<>/bindings/functions/constructors/Cons.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors Installing /<>/bindings/distributions/uniform_int.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/uniform.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/shifted_gamma.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/shifted_exponential.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/poisson.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/normal.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/log_normal.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/log_laplace.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/log_gamma.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/laplace.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/iid.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/geometric.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/gamma.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/exponential.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/dirichlet_on.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/dirichlet.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/cauchy.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/binomial.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/beta.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bindings/distributions/bernoulli.json to /<>/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing subdir /<>/help to /<>/debian/bali-phy/usr/lib/bali-phy/help Installing /<>/help/parameters.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help Installing /<>/help/alphabets.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help Installing /<>/help/parameters/priors.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/parameters Installing /<>/help/commands/version.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/verbose.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/unalign.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/tree.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/test.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/subsample.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/smodel.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/set.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/seed.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/scale.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/print.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/pre-burnin.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/package-path.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/name.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/model.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/link.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/iterations.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/imodel.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/enable.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/disable.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/config.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/branch-lengths.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/alphabet.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/align.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/commands/Rao-Blackwellize.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/help/alphabets/genetic-code.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/help/alphabets/Triplets.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/help/alphabets/Doublets.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/help/alphabets/Codons.txt to /<>/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing subdir /<>/examples to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples Installing /<>/examples/sequences/microbotryum/table1.accessions to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/paper.txt to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/other.accessions to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/additional.accessions to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/76.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/76.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/76-muscle.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/76-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/76-clustalw.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/76-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/37.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/37.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/37-muscle.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/37-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/37-clustalw.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/37-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30.aln to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30-muscle.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30-clustalw.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/microbotryum/30-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/examples/sequences/lrRNA/mollusc12.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/examples/sequences/lrRNA/mollusc.rna.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/examples/sequences/lrRNA/mollusc.gb to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/examples/sequences/lrRNA/mollusc.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/examples/sequences/lrRNA/keep.pl to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/examples/sequences/lrRNA/NOTES.txt to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/examples/sequences/ferns/orig.nex to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/examples/sequences/ferns/orig.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/examples/sequences/ferns/config2.txt to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/examples/sequences/ferns/config.txt to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/examples/sequences/ferns/cleaned.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/examples/sequences/ferns/README.txt to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/subtilase.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/rr_receiver.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/papain.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/lysozyme.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/legume_lectin.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/lectin.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/haloperoxidase.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/annexin.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/examples/sequences/ITS/ITS2-trimmed.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /<>/examples/sequences/ITS/ITS1-trimmed.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /<>/examples/sequences/ITS/5.8S.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /<>/examples/sequences/HIV/HIVSIV.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV Installing /<>/examples/sequences/HIV/chain-2005/pol.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/HIV/chain-2005/pol-common.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/HIV/chain-2005/env.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/HIV/chain-2005/env-common.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/HIV/chain-2005/env-clustal.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/examples/sequences/Globins/some.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/many.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/many-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/globins.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/few.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/few-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/few-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/few-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/bglobin.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/10-globins.xml to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Globins/10-globins-Lunter.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/examples/sequences/Enolase/enolase-38.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /<>/examples/sequences/Enolase/enolase-38-trimmed.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /<>/examples/sequences/EF-Tu/5d.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/5d-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/5d-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/5d-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/48b.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/48b-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/48b-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/25-mafft.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/12d.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/12d-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/12d-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/EF-Tu/12d-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/examples/sequences/Duplications/trp-tyr/tyr.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/examples/sequences/Duplications/trp-tyr/trp.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/examples/sequences/5S-rRNA/5d.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/5d-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/5d-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/5d-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-t-coffee.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-t-coffee.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-fsa.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-fsa.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-tcoffee.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-tcoffee.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-t-coffee.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-t-coffee.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-poy.trees to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-poy.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-poy.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-poy.command to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-muscle.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-fsa.ph to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-fsa.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-clustalw.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-clustalw.dnd to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/examples/models/Airline.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Coalmine.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Demo1.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Demo2.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Demo3.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Demo4.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Demo5.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/examples/models/Demo6.hs to /<>/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing src/bali-phy/bali-phy to /<>/debian/bali-phy/usr/bin Installing src/builtins/Array.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Data.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Prelude.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alphabet.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Pair.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Modifiables.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alignment.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/PopGen.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Distribution.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Range.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SModel.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/MCMC.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Vector.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Environment.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SMC.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Real.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Bits.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Foreign.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Text.so to /<>/debian/bali-phy/usr/lib/bali-phy Installing src/model_P to /<>/debian/bali-phy/usr/bin Installing src/statreport to /<>/debian/bali-phy/usr/bin Installing src/stats-select to /<>/debian/bali-phy/usr/bin Installing src/alignment-gild to /<>/debian/bali-phy/usr/bin Installing src/alignment-consensus to /<>/debian/bali-phy/usr/bin Installing src/alignment-max to /<>/debian/bali-phy/usr/bin Installing src/alignment-chop-internal to /<>/debian/bali-phy/usr/bin Installing src/alignment-indices to /<>/debian/bali-phy/usr/bin Installing src/alignment-info to /<>/debian/bali-phy/usr/bin Installing src/alignment-cat to /<>/debian/bali-phy/usr/bin Installing src/alignment-translate to /<>/debian/bali-phy/usr/bin Installing src/alignment-find to /<>/debian/bali-phy/usr/bin Installing src/trees-consensus to /<>/debian/bali-phy/usr/bin Installing src/tree-mean-lengths to /<>/debian/bali-phy/usr/bin Installing src/mctree-mean-lengths to /<>/debian/bali-phy/usr/bin Installing src/trees-to-SRQ to /<>/debian/bali-phy/usr/bin Installing src/pickout to /<>/debian/bali-phy/usr/bin Installing src/cut-range to /<>/debian/bali-phy/usr/bin Installing src/trees-distances to /<>/debian/bali-phy/usr/bin Installing src/alignment-thin to /<>/debian/bali-phy/usr/bin Installing src/alignments-diff to /<>/debian/bali-phy/usr/bin Installing src/tree-tool to /<>/debian/bali-phy/usr/bin Installing src/alignment-distances to /<>/debian/bali-phy/usr/bin Installing src/alignment-draw to /<>/debian/bali-phy/usr/bin Installing src/trees-bootstrap to /<>/debian/bali-phy/usr/bin Installing src/draw-tree to /<>/debian/bali-phy/usr/bin Installing src/extract-ancestors to /<>/debian/bali-phy/usr/bin Installing src/summarize-ancestors to /<>/debian/bali-phy/usr/bin Installing src/bali-subsample to /<>/debian/bali-phy/usr/bin Installing doc/bali-phy.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/model_P.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/statreport.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/stats-select.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-gild.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-consensus.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-max.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-chop-internal.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-indices.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-info.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-cat.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-translate.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-find.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/trees-consensus.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/tree-mean-lengths.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/mctree-mean-lengths.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/trees-to-SRQ.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/pickout.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/cut-range.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/trees-distances.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-thin.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignments-diff.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/tree-tool.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-distances.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-draw.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/trees-bootstrap.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/draw-tree.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/extract-ancestors.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/summarize-ancestors.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/bali-subsample.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/bp-analyze.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing doc/bali-phy-pkg.1 to /<>/debian/bali-phy/usr/share/man/man1 Installing /<>/scripts/bp-analyze to /<>/debian/bali-phy/usr/bin Installing /<>/scripts/bali-phy-pkg to /<>/debian/bali-phy/usr/bin Installing /<>/scripts/compare-runs.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/compare-runs2.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/tree-plot1.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/tree-plot2.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/tree-plot3.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/tree-plot2-3D.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/tree-plot1-3D.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/scripts/tree-plot3-3D.R to /<>/debian/bali-phy/usr/lib/bali-phy/libexec dh_installdocs -a -O--buildsystem=meson dh_installchangelogs -a -O--buildsystem=meson dh_installman -a -O--buildsystem=meson dh_installsystemduser -a -O--buildsystem=meson dh_lintian -a -O--buildsystem=meson dh_perl -a -O--buildsystem=meson dh_link -a -O--buildsystem=meson dh_strip_nondeterminism -a -O--buildsystem=meson dh_compress -a -O--buildsystem=meson dh_fixperms -a -O--buildsystem=meson dh_missing -a -O--buildsystem=meson dh_dwz -a -a -O--buildsystem=meson dh_strip -a -a -O--buildsystem=meson dh_makeshlibs -a -a -O--buildsystem=meson dh_shlibdeps -a -a -O--buildsystem=meson dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Text.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _Z6rstripRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _Z16portable_getlineRSiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _ZNK7EVectorcvSt6vectorIiSaIiEEEv: it's probably a plugin dpkg-shlibdeps: warning: 32 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol bool_false: it's probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _ZN8DoubletsC1ERK11Nucleotides: it's probably a plugin dpkg-shlibdeps: warning: 26 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol _ZN8reg_heap12copy_contextEi: it's probably a plugin dpkg-shlibdeps: warning: 37 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Real.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZN12substitution33sample_internal_node_sequence_SEVERK3BoxISt6vectorISt4pairIiiESaIS3_EEERK7EVectorRK23Likelihood_Cache_BranchSE_SB_: it's probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol _ZN14expression_refC1ERKSt16initializer_listIS_E: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Bits.so contains an unresolvable reference to symbol _ZN14expression_refC1ERKb: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Foreign.so contains an unresolvable reference to symbol _ZNK6Object5printB5cxx11Ev: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=meson dh_gencontrol -a -O--buildsystem=meson dh_md5sums -a -O--buildsystem=meson dh_builddeb -a -O--buildsystem=meson dpkg-deb: building package 'bali-phy' in '../bali-phy_3.5.0.2+dfsg-1_ppc64el.deb'. dpkg-deb: building package 'bali-phy-dbgsym' in '../bali-phy-dbgsym_3.5.0.2+dfsg-1_ppc64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../bali-phy_3.5.0.2+dfsg-1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-09-26T19:12:03Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bali-phy_3.5.0.2+dfsg-1_ppc64el.changes: ---------------------------------------- Format: 1.8 Date: Fri, 25 Sep 2020 15:50:32 +0200 Source: bali-phy Binary: bali-phy bali-phy-dbgsym Built-For-Profiles: cross nocheck Architecture: ppc64el Version: 3.5.0.2+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: bali-phy - Bayesian Inference of Alignment and Phylogeny Changes: bali-phy (3.5.0.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: 2c34949fd8f6eb32319b524f505b16e7719054f6 144842220 bali-phy-dbgsym_3.5.0.2+dfsg-1_ppc64el.deb 92e9d4faad489b66bbc63b68409e76ae4063f114 8247 bali-phy_3.5.0.2+dfsg-1_ppc64el.buildinfo fd48172d9407029ee77d2f8302373fe836ee44bd 6292240 bali-phy_3.5.0.2+dfsg-1_ppc64el.deb Checksums-Sha256: ccf9cb5e2a586243a9bc1090543e07e0c0548354871bede8c6272f41633acced 144842220 bali-phy-dbgsym_3.5.0.2+dfsg-1_ppc64el.deb e9914b9f29a73d1f7135311316cfddaa5796db277a1918d009470a72cdb21c1d 8247 bali-phy_3.5.0.2+dfsg-1_ppc64el.buildinfo 042b0f0a2cf0e66d3256dcd79d81c35969c8c26c3a9e0b7658873cc804293c2c 6292240 bali-phy_3.5.0.2+dfsg-1_ppc64el.deb Files: 8dd0ba18ae65a3dcfb532920ae5b91a1 144842220 debug optional bali-phy-dbgsym_3.5.0.2+dfsg-1_ppc64el.deb 9f5c8808323280263c2d07c280e03c38 8247 science optional bali-phy_3.5.0.2+dfsg-1_ppc64el.buildinfo 38a2ccb923bc760802f0bcd1a4feb359 6292240 science optional bali-phy_3.5.0.2+dfsg-1_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: bali-phy Binary: bali-phy bali-phy-dbgsym Architecture: ppc64el Version: 3.5.0.2+dfsg-1 Checksums-Md5: 8dd0ba18ae65a3dcfb532920ae5b91a1 144842220 bali-phy-dbgsym_3.5.0.2+dfsg-1_ppc64el.deb 38a2ccb923bc760802f0bcd1a4feb359 6292240 bali-phy_3.5.0.2+dfsg-1_ppc64el.deb Checksums-Sha1: 2c34949fd8f6eb32319b524f505b16e7719054f6 144842220 bali-phy-dbgsym_3.5.0.2+dfsg-1_ppc64el.deb fd48172d9407029ee77d2f8302373fe836ee44bd 6292240 bali-phy_3.5.0.2+dfsg-1_ppc64el.deb Checksums-Sha256: ccf9cb5e2a586243a9bc1090543e07e0c0548354871bede8c6272f41633acced 144842220 bali-phy-dbgsym_3.5.0.2+dfsg-1_ppc64el.deb 042b0f0a2cf0e66d3256dcd79d81c35969c8c26c3a9e0b7658873cc804293c2c 6292240 bali-phy_3.5.0.2+dfsg-1_ppc64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 26 Sep 2020 19:12:00 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-7), binutils (= 2.35.1-1), binutils-common (= 2.35.1-1), binutils-x86-64-linux-gnu (= 2.35.1-1), bsdextrautils (= 2.36-3+b1), bsdutils (= 1:2.36-3+b1), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.0-1), cpp-10 (= 10.2.0-9), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2.1), debianutils (= 4.11.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), fontconfig-config (= 2.13.1-4.2), fonts-dejavu-core (= 2.37-2), g++ (= 4:10.2.0-1), g++-10 (= 10.2.0-9), gcc (= 4:10.2.0-1), gcc-10 (= 10.2.0-9), gcc-10-base (= 10.2.0-9), gcc-9-base (= 9.3.0-18), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-18), libasan6 (= 10.2.0-9), libatomic1 (= 10.2.0-9), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.35.1-1), libblkid-dev (= 2.36-3+b1), libblkid1 (= 2.36-3+b1), libboost-chrono-dev (= 1.71.0.3), libboost-chrono1.71-dev (= 1.71.0-6+b2), libboost-chrono1.71.0 (= 1.71.0-6+b2), libboost-dev (= 1.71.0.3), libboost-filesystem-dev (= 1.71.0.3), libboost-filesystem1.71-dev (= 1.71.0-6+b2), libboost-filesystem1.71.0 (= 1.71.0-6+b2), libboost-program-options-dev (= 1.71.0.3), libboost-program-options1.71-dev (= 1.71.0-6+b2), libboost-program-options1.71.0 (= 1.71.0-6+b2), libboost-random-dev (= 1.71.0.3), libboost-random1.71-dev (= 1.71.0-6+b2), libboost-random1.71.0 (= 1.71.0-6+b2), libboost-system-dev (= 1.71.0.3), libboost-system1.71-dev (= 1.71.0-6+b2), libboost-system1.71.0 (= 1.71.0-6+b2), libboost1.71-dev (= 1.71.0-6+b2), libbrotli-dev (= 1.0.9-2), libbrotli1 (= 1.0.9-2), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-3), libc-dev-bin (= 2.31-3), libc6 (= 2.31-3), libc6-dev (= 2.31-3), libcairo-gobject2 (= 1.16.0-4), libcairo-script-interpreter2 (= 1.16.0-4), libcairo2 (= 1.16.0-4), libcairo2-dev (= 1.16.0-4), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-9), libcmark-gfm-extensions0 (= 0.29.0.gfm.0-6), libcmark-gfm0 (= 0.29.0.gfm.0-6), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35.1-1), libctf0 (= 2.35.1-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.254), libdebhelper-perl (= 13.2.1), libdpkg-perl (= 1.20.5), libeigen3-dev (= 3.3.7-3), libelf1 (= 0.181-1), libexpat1 (= 2.2.9-1), libexpat1-dev (= 2.2.9-1), libffi-dev (= 3.3-4), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.9.0-1), libfontconfig-dev (= 2.13.1-4.2), libfontconfig1 (= 2.13.1-4.2), libfontconfig1-dev (= 2.13.1-4.2), libfreetype-dev (= 2.10.2+dfsg-3), libfreetype6 (= 2.10.2+dfsg-3), libfreetype6-dev (= 2.10.2+dfsg-3), libgcc-10-dev (= 10.2.0-9), libgcc-9-dev (= 9.3.0-18), libgcc-s1 (= 10.2.0-9), libgcrypt20 (= 1.8.6-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.66.0-2), libglib2.0-bin (= 2.66.0-2), libglib2.0-data (= 2.66.0-2), libglib2.0-dev (= 2.66.0-2), libglib2.0-dev-bin (= 2.66.0-2), libgmp10 (= 2:6.2.0+dfsg-6), libgomp1 (= 10.2.0-9), libgpg-error0 (= 1.38-2), libice-dev (= 2:1.0.10-1), libice6 (= 2:1.0.10-1), libicu67 (= 67.1-4), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-9), liblsan0 (= 10.2.0-9), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), liblzo2-2 (= 2.10-2), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount-dev (= 2.36-3+b1), libmount1 (= 2.36-3+b1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncursesw6 (= 6.2+20200918-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre16-3 (= 2:8.39-13), libpcre2-16-0 (= 10.34-7), libpcre2-32-0 (= 10.34-7), libpcre2-8-0 (= 10.34-7), libpcre2-dev (= 10.34-7), libpcre2-posix2 (= 10.34-7), libpcre3 (= 2:8.39-13), libpcre3-dev (= 2:8.39-13), libpcre32-3 (= 2:8.39-13), libpcrecpp0v5 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libpixman-1-0 (= 0.36.0-1), libpixman-1-dev (= 0.36.0-1), libpng-dev (= 1.6.37-3), libpng16-16 (= 1.6.37-3), libpthread-stubs0-dev (= 0.4-1), libpython3-stdlib (= 3.8.2-3), libpython3.8-minimal (= 3.8.6-1), libpython3.8-stdlib (= 3.8.6-1), libquadmath0 (= 10.2.0-9), librange-v3-dev (= 0.11.0-1), libreadline8 (= 8.0-4), libseccomp2 (= 2.4.4-1), libselinux1 (= 3.1-2), libselinux1-dev (= 3.1-2), libsepol1 (= 3.1-1), libsepol1-dev (= 3.1-1), libsigsegv2 (= 2.12-2), libsm-dev (= 2:1.2.3-1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36-3+b1), libsqlite3-0 (= 3.33.0-1), libssl1.1 (= 1.1.1g-1), libstdc++-10-dev (= 10.2.0-9), libstdc++-9-dev (= 9.3.0-18), libstdc++6 (= 10.2.0-9), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-1), libtinfo6 (= 6.2+20200918-1), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-9), libubsan1 (= 10.2.0-9), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3+b1), libx11-6 (= 2:1.6.12-1), libx11-data (= 2:1.6.12-1), libx11-dev (= 2:1.6.12-1), libxau-dev (= 1:1.0.8-1+b2), libxau6 (= 1:1.0.8-1+b2), libxcb-render0 (= 1.14-2), libxcb-render0-dev (= 1.14-2), libxcb-shm0 (= 1.14-2), libxcb-shm0-dev (= 1.14-2), libxcb1 (= 1.14-2), libxcb1-dev (= 1.14-2), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.3-1+b2), libxext6 (= 2:1.3.3-1+b2), libxml2 (= 2.9.10+dfsg-6), libxrender-dev (= 1:0.9.10-1), libxrender1 (= 1:0.9.10-1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.10-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), meson (= 0.55.3-1), mime-support (= 3.64), ncurses-base (= 6.2+20200918-1), ncurses-bin (= 6.2+20200918-1), ninja-build (= 1.10.1-1), nlohmann-json3-dev (= 3.9.0-1), pandoc (= 2.9.2.1-1+b1), pandoc-data (= 2.9.2.1-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21), python3 (= 3.8.2-3), python3-distutils (= 3.8.5-1), python3-lib2to3 (= 3.8.5-1), python3-minimal (= 3.8.2-3), python3-pkg-resources (= 49.3.1-2), python3.8 (= 3.8.6-1), python3.8-minimal (= 3.8.6-1), readline-common (= 8.0-4), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-5), tar (= 1.30+dfsg-7), ucf (= 3.0043), util-linux (= 2.36-3+b1), uuid-dev (= 2.36-3+b1), x11-common (= 1:7.7+20), x11proto-core-dev (= 2020.1-1), x11proto-dev (= 2020.1-1), x11proto-xext-dev (= 2020.1-1), xorg-sgml-doctools (= 1:1.11-1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1601041832" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bali-phy-dbgsym_3.5.0.2+dfsg-1_ppc64el.deb ------------------------------------------ new Debian package, version 2.0. size 144842220 bytes: control archive=2836 bytes. 2361 bytes, 12 lines control 5284 bytes, 50 lines md5sums Package: bali-phy-dbgsym Source: bali-phy Version: 3.5.0.2+dfsg-1 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 149968 Depends: bali-phy (= 3.5.0.2+dfsg-1) Section: debug Priority: optional Description: debug symbols for bali-phy Build-Ids: 042fc28323f4d7dab0e2920b5e0e81203c2425b5 08c17646908730c3c4a7e534778e1b1482c4e763 0d48da3e652187ff3ee473bc3f28f64f31daaaff 145d94513b732b252264eef398956b2b71ebf524 218ea9160b039af4d0bb57d1615dec90e46af902 22becbbe1109a3ccba875680e743779ecfbbc606 2a52f663f8b6dd9d90300132d7287da3b7be3fb6 2a5dbbef9b96c67d5d4de972d0ce3c23a14cc6fa 30f34bf1968ace8d4bbe2ec81b8a4a41d6ccb636 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Debian Med Packaging Team Installed-Size: 41459 Depends: libboost-chrono1.71.0, libboost-filesystem1.71.0, libboost-program-options1.71.0, libboost-random1.71.0, libc6 (>= 2.29), libcairo2 (>= 1.4.10), libgcc-s1 (>= 4.2), libstdc++6 (>= 9), perl:any, python3 Recommends: r-base, gnuplot Suggests: figtree, seaview Section: science Priority: optional Homepage: http://www.bali-phy.org Description: Bayesian Inference of Alignment and Phylogeny BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot. . BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. 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drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/ -rw-r--r-- root/root 27755 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/30-clustalw.fasta -rw-r--r-- root/root 992 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/30-clustalw.ph -rw-r--r-- root/root 32455 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/30-muscle.fasta -rw-r--r-- root/root 992 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/30-muscle.ph -rw-r--r-- root/root 43929 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/30.aln -rw-r--r-- root/root 992 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/30.dnd -rw-r--r-- root/root 33175 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/30.fasta -rw-r--r-- root/root 992 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/30.ph -rw-r--r-- root/root 29779 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/37-clustalw.fasta -rw-r--r-- root/root 1193 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/37-clustalw.ph -rw-r--r-- root/root 38709 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/37-muscle.fasta -rw-r--r-- root/root 1193 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/37-muscle.ph -rw-r--r-- root/root 1195 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/37.dnd -rw-r--r-- root/root 33674 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/37.fasta -rw-r--r-- root/root 63592 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/76-clustalw.fasta -rw-r--r-- root/root 2469 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/76-clustalw.ph -rw-r--r-- root/root 84415 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/76-muscle.fasta -rw-r--r-- root/root 2467 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/76-muscle.ph -rw-r--r-- root/root 2701 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/76.dnd -rw-r--r-- root/root 68256 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/76.fasta -rw-r--r-- root/root 333 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/additional.accessions -rw-r--r-- root/root 18 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/other.accessions -rw-r--r-- root/root 441 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/paper.txt -rw-r--r-- root/root 333 2020-07-04 22:33 ./usr/share/doc/bali-phy/examples/sequences/microbotryum/table1.accessions -rw-r--r-- root/root 535 2020-09-25 13:50 ./usr/share/doc/bali-phy/run-unit-test drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 80 2020-09-25 13:50 ./usr/share/lintian/overrides/bali-phy drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/share/man/ drwxr-xr-x root/root 0 2020-09-25 13:50 ./usr/share/man/man1/ -rw-r--r-- root/root 900 2020-09-25 13:50 ./usr/share/man/man1/alignment-cat.1.gz -rw-r--r-- root/root 500 2020-09-25 13:50 ./usr/share/man/man1/alignment-chop-internal.1.gz -rw-r--r-- root/root 609 2020-09-25 13:50 ./usr/share/man/man1/alignment-consensus.1.gz -rw-r--r-- root/root 949 2020-09-25 13:50 ./usr/share/man/man1/alignment-distances.1.gz -rw-r--r-- root/root 764 2020-09-25 13:50 ./usr/share/man/man1/alignment-draw.1.gz -rw-r--r-- root/root 480 2020-09-25 13:50 ./usr/share/man/man1/alignment-find.1.gz -rw-r--r-- root/root 654 2020-09-25 13:50 ./usr/share/man/man1/alignment-gild.1.gz -rw-r--r-- root/root 668 2020-09-25 13:50 ./usr/share/man/man1/alignment-indices.1.gz -rw-r--r-- root/root 511 2020-09-25 13:50 ./usr/share/man/man1/alignment-info.1.gz -rw-r--r-- root/root 651 2020-09-25 13:50 ./usr/share/man/man1/alignment-max.1.gz -rw-r--r-- root/root 1218 2020-09-25 13:50 ./usr/share/man/man1/alignment-thin.1.gz -rw-r--r-- root/root 672 2020-09-25 13:50 ./usr/share/man/man1/alignment-translate.1.gz -rw-r--r-- root/root 634 2020-09-25 13:50 ./usr/share/man/man1/alignments-diff.1.gz -rw-r--r-- root/root 639 2020-09-25 13:50 ./usr/share/man/man1/bali-phy-pkg.1.gz -rw-r--r-- root/root 1580 2020-09-25 13:50 ./usr/share/man/man1/bali-phy.1.gz -rw-r--r-- root/root 486 2020-09-25 13:50 ./usr/share/man/man1/bali-subsample.1.gz -rw-r--r-- root/root 517 2020-09-25 13:50 ./usr/share/man/man1/bp-analyze.1.gz -rw-r--r-- root/root 518 2020-09-25 13:50 ./usr/share/man/man1/cut-range.1.gz -rw-r--r-- root/root 970 2020-09-25 13:50 ./usr/share/man/man1/draw-tree.1.gz -rw-r--r-- root/root 724 2020-09-25 13:50 ./usr/share/man/man1/extract-ancestors.1.gz -rw-r--r-- root/root 679 2020-09-25 13:50 ./usr/share/man/man1/mctree-mean-lengths.1.gz -rw-r--r-- root/root 434 2020-09-25 13:50 ./usr/share/man/man1/model_P.1.gz -rw-r--r-- root/root 467 2020-09-25 13:50 ./usr/share/man/man1/pickout.1.gz -rw-r--r-- root/root 839 2020-09-25 13:50 ./usr/share/man/man1/statreport.1.gz -rw-r--r-- root/root 487 2020-09-25 13:50 ./usr/share/man/man1/stats-select.1.gz -rw-r--r-- root/root 739 2020-09-25 13:50 ./usr/share/man/man1/summarize-ancestors.1.gz -rw-r--r-- root/root 707 2020-09-25 13:50 ./usr/share/man/man1/tree-mean-lengths.1.gz -rw-r--r-- root/root 615 2020-09-25 13:50 ./usr/share/man/man1/tree-tool.1.gz -rw-r--r-- root/root 856 2020-09-25 13:50 ./usr/share/man/man1/trees-bootstrap.1.gz -rw-r--r-- root/root 1118 2020-09-25 13:50 ./usr/share/man/man1/trees-consensus.1.gz -rw-r--r-- root/root 886 2020-09-25 13:50 ./usr/share/man/man1/trees-distances.1.gz -rw-r--r-- root/root 619 2020-09-25 13:50 ./usr/share/man/man1/trees-to-SRQ.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [622 B] Get:5 copy:/<>/apt_archive ./ Packages [714 B] Fetched 2299 B in 0s (87.1 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:ppc64el t1utils unzip 0 upgraded, 86 newly installed, 0 to remove and 0 not upgraded. Need to get 6490 kB of archives. After this operation, 19.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1 [13.8 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b5 [38.4 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1 [15.1 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.24-1 [16.2 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.23-1 [128 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1 [18.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1 [14.2 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.07-3+b5 [22.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1 [11.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.110-1 [10.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.00-4 [38.3 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1 [12.3 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b1 [26.0 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b2 [28.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1 [21.8 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004002-1 [13.1 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004000-1 [59.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1 [173 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-1 [53.6 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b6 [17.4 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2 [45.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1 [98.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1 [103 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b7 [8696 B] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1 [12.7 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1 [198 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b2 [75.1 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010006-1 [339 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1 [35.6 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-1 [83.4 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.96.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6490 kB in 0s (23.9 MB/s) Selecting previously unselected package diffstat. (Reading database ... 42186 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package gpg. Preparing to unpack .../03-gpg_2.2.20-1_amd64.deb ... Unpacking gpg (2.2.20-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../04-libaliased-perl_0.34-1_all.deb ... Unpacking libaliased-perl (0.34-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../05-libapt-pkg-perl_0.1.36+b3_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b3) ... Selecting previously unselected package libb-hooks-op-check-perl. 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Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b5) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b7) ... Setting up libperlio-gzip-perl (0.19-1+b6) ... Setting up libhtml-html5-entities-perl (0.004-1) ... Setting up libsereal-decoder-perl (4.018+ds-1) ... Setting up libmarkdown2:amd64 (2.2.6-1) ... Setting up liburi-perl (1.76-2) ... Setting up gpg (2.2.20-1) ... Setting up libemail-address-xs-perl (1.04-1+b2) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libtype-tiny-perl (1.010006-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.12-1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1) ... Setting up libiterator-util-perl (0.02+ds1-1) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004000-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.96.0) ... Setting up sbuild-build-depends-lintian-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.31-3) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for mime-support (3.64) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 2559816 Build-Time: 1581 Distribution: unstable Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 36 Job: bali-phy_3.5.0.2+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: bali-phy Package-Time: 1628 Source-Version: 3.5.0.2+dfsg-1 Space: 2559816 Status: successful Version: 3.5.0.2+dfsg-1 -------------------------------------------------------------------------------- Finished at 2020-09-26T19:12:03Z Build needed 00:27:08, 2559816k disk space