sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | bamtools 2.5.1+dfsg-3 (mipsel) Sun, 05 May 2019 04:55:51 +0000 | +==============================================================================+ Package: bamtools Version: 2.5.1+dfsg-3 Source Version: 2.5.1+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-23ccb0d4-fac0-4d0e-b82e-30c0167ddcf3' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [247 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-04-0809.57.pdiff [314 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-04-2010.17.pdiff [10.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-05-0210.43.pdiff [2628 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-05-0210.43.pdiff [2628 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-04-0809.57.pdiff [224 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-04-2010.17.pdiff [9410 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-05-0210.43.pdiff [4719 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-05-0210.43.pdiff [4719 B] Get:10 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [8023 kB] Fetched 8353 kB in 2s (4439 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bamtools.git Please use: git clone https://salsa.debian.org/med-team/bamtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 210 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main bamtools 2.5.1+dfsg-3 (dsc) [2392 B] Get:2 http://debian.oregonstate.edu/debian unstable/main bamtools 2.5.1+dfsg-3 (tar) [197 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main bamtools 2.5.1+dfsg-3 (diff) [10.7 kB] Fetched 210 kB in 0s (4344 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/bamtools-s8Srjx/bamtools-2.5.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bamtools-s8Srjx' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-h4CSnG/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-h4CSnG/apt_archive ./ InRelease Get:2 copy:/<>/resolver-h4CSnG/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-h4CSnG/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-h4CSnG/apt_archive ./ Sources [363 B] Get:5 copy:/<>/resolver-h4CSnG/apt_archive ./ Packages [452 B] Fetched 1772 B in 0s (103 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-mipsel-linux-gnu cpp-8-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel dpkg-cross file g++-8-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-8-cross-base gcc-8-mipsel-linux-gnu gcc-8-mipsel-linux-gnu-base gcc-mipsel-linux-gnu libatomic1-mipsel-cross libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mipsel-cross libgcc1-mipsel-cross libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mipsel-cross libstdc++6-mipsel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mipsel-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-mipsel-linux-gnu gcc-8-doc libstdc++6-8-dbg-mipsel-cross gcc-8-multilib-mipsel-linux-gnu libgcc1-dbg-mipsel-cross libgomp1-dbg-mipsel-cross libitm1-dbg-mipsel-cross libatomic1-dbg-mipsel-cross libasan5-dbg-mipsel-cross liblsan0-dbg-mipsel-cross libtsan0-dbg-mipsel-cross libubsan1-dbg-mipsel-cross libmpx2-dbg-mipsel-cross libquadmath0-dbg-mipsel-cross manpages-dev autoconf automake libtool flex bison gdb-mipsel-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-mipsel-linux-gnu cpp-8-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel dpkg-cross file g++-8-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-8-cross-base gcc-8-mipsel-linux-gnu gcc-8-mipsel-linux-gnu-base gcc-mipsel-linux-gnu libatomic1-mipsel-cross libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mipsel-cross libgcc1-mipsel-cross libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mipsel-cross libstdc++6-mipsel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mipsel-cross sbuild-build-depends-core-dummy:mipsel sensible-utils ucf 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After this operation, 146 MB of additional disk space will be used. Get:1 copy:/<>/resolver-h4CSnG/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [868 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.31.1-16 [2487 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mipsel-linux-gnu-base amd64 8.3.0-7cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-mipsel-linux-gnu amd64 8.3.0-7cross1 [6278 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-7cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.28-10cross2 [1229 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mipsel-cross all 1:8.3.0-7cross1 [46.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 8.3.0-7cross1 [69.5 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 8.3.0-7cross1 [6692 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-mipsel-cross all 8.3.0-7cross1 [211 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mipsel-linux-gnu amd64 8.3.0-7cross1 [6691 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:8.3.0-1 [1452 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 8.3.0-7cross1 [311 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 4.19.28-2cross2 [1240 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.28-10cross2 [2320 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-mipsel-cross all 8.3.0-7cross1 [1535 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-mipsel-linux-gnu amd64 8.3.0-7cross1 [6853 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:8.3.0-1 [1172 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.6 [6564 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.0 MB in 1s (65.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11942 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../32-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../33-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../34-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../35-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../36-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../37-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../38-libdebian-dpkgcross-perl_2.6.15-2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../39-dpkg-cross_2.6.15-2_all.deb ... Unpacking dpkg-cross (2.6.15-2) ... Selecting previously unselected package crossbuild-essential-mipsel. Preparing to unpack .../40-crossbuild-essential-mipsel_12.6_all.deb ... Unpacking crossbuild-essential-mipsel (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:mipsel. Preparing to unpack .../41-sbuild-build-depends-core-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-core-dummy:mipsel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-7cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libc6-mipsel-cross (2.28-10cross2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libatomic1-mipsel-cross (8.3.0-7cross1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-2) ... Setting up libgcc1-mipsel-cross (1:8.3.0-7cross1) ... Setting up binutils-mipsel-linux-gnu (2.31.1-16) ... Setting up libgomp1-mipsel-cross (8.3.0-7cross1) ... Setting up gcc-8-mipsel-linux-gnu-base:amd64 (8.3.0-7cross1) ... Setting up linux-libc-dev-mipsel-cross (4.19.28-2cross2) ... Setting up sensible-utils (0.0.12) ... Setting up cpp-8-mipsel-linux-gnu (8.3.0-7cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgcc-8-dev-mipsel-cross (8.3.0-7cross1) ... Setting up libc6-dev-mipsel-cross (2.28-10cross2) ... Setting up libstdc++6-mipsel-cross (8.3.0-7cross1) ... Setting up cpp-mipsel-linux-gnu (4:8.3.0-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++-8-dev-mipsel-cross (8.3.0-7cross1) ... Setting up gcc-8-mipsel-linux-gnu (8.3.0-7cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-8-mipsel-linux-gnu (8.3.0-7cross1) ... Setting up g++-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-mipsel (12.6) ... Setting up sbuild-build-depends-core-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-h4CSnG/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-h4CSnG/apt_archive ./ InRelease Get:2 copy:/<>/resolver-h4CSnG/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-h4CSnG/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-h4CSnG/apt_archive ./ Sources [482 B] Get:5 copy:/<>/resolver-h4CSnG/apt_archive ./ Packages [571 B] Fetched 2016 B in 0s (123 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:mipsel 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-h4CSnG/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:mipsel. (Reading database ... 15113 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-essential-dummy:mipsel (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:mipsel (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/<>/resolver-h4CSnG/apt_archive/sbuild-build-depends-bamtools-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-bamtools-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-h4CSnG/apt_archive ./ InRelease Get:2 copy:/<>/resolver-h4CSnG/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-h4CSnG/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-h4CSnG/apt_archive ./ Sources [672 B] Get:5 copy:/<>/resolver-h4CSnG/apt_archive ./ Packages [753 B] Fetched 2388 B in 0s (124 kB/s) Reading package lists... Reading package lists... Install bamtools build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz gcc-8-base:mipsel gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libatomic1:mipsel libbsd0 libc6:mipsel libc6-dev:mipsel libclang1-6.0 libcroco3 libcurl4 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libgcc-8-dev:mipsel libgcc1:mipsel libglib2.0-0 libgomp1:mipsel libgssapi-krb5-2 libjsoncpp-dev:mipsel libjsoncpp1 libjsoncpp1:mipsel libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libllvm6.0 libncurses6 libnghttp2-14 libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libstdc++-8-dev:mipsel libstdc++6:mipsel libtool libuchardet0 libuv1 libxapian30 linux-libc-dev:mipsel lsb-base m4 man-db po-debconf procps zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:mipsel libc-l10n:mipsel locales:mipsel manpages-dev:mipsel krb5-doc krb5-user libstdc++-8-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:mipsel ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz gcc-8-base:mipsel gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libatomic1:mipsel libbsd0 libc6:mipsel libc6-dev:mipsel libclang1-6.0 libcroco3 libcurl4 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libgcc-8-dev:mipsel libgcc1:mipsel libglib2.0-0 libgomp1:mipsel libgssapi-krb5-2 libjsoncpp-dev:mipsel libjsoncpp1 libjsoncpp1:mipsel libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libllvm6.0 libncurses6 libnghttp2-14 libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libstdc++-8-dev:mipsel libstdc++6:mipsel libtool libuchardet0 libuv1 libxapian30 linux-libc-dev:mipsel lsb-base m4 man-db po-debconf procps sbuild-build-depends-bamtools-dummy:mipsel zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 55.1 MB of archives. After this operation, 228 MB of additional disk space will be used. Get:1 copy:/<>/resolver-h4CSnG/apt_archive ./ sbuild-build-depends-bamtools-dummy 0.invalid.0 [916 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 lsb-base all 10.2019031300 [28.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.3.3-4 [314 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-2 [65.6 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-2 [121 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-2 [1530 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-2 [368 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-2 [158 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1 [69.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1 [106 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3 [224 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.37.0-1 [83.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.64.0-2 [331 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.6-1 [105 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.24.1-1 [110 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.84 [17.2 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm6.0 amd64 1:6.0.1-11 [14.8 MB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libclang1-6.0 amd64 1:6.0.1-11 [7065 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxapian30 amd64 1.4.11-1 [1104 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 doxygen amd64 1.8.13-10 [3985 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-8-base mipsel 8.3.0-7 [191 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.10 [180 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc1 mipsel 1:8.3.0-7 [45.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.28-10 [2429 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 8.3.0-7 [6692 B] Get:65 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 4.19.28-2 [1152 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.28-10 [2322 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 8.3.0-7 [70.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-8-dev mipsel 8.3.0-7 [210 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 8.3.0-7 [349 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main mipsel libjsoncpp1 mipsel 1.7.4-3 [73.1 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main mipsel libjsoncpp-dev mipsel 1.7.4-3 [96.5 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-8-dev mipsel 8.3.0-7 [1552 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-1 [90.3 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-1 [213 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.1 MB in 1s (66.8 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15113 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../06-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package libprocps7:amd64. Preparing to unpack .../07-libprocps7_2%3a3.3.15-2_amd64.deb ... Unpacking libprocps7:amd64 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../08-lsb-base_10.2019031300_all.deb ... Unpacking lsb-base (10.2019031300) ... Selecting previously unselected package procps. Preparing to unpack .../09-procps_2%3a3.3.15-2_amd64.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../11-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.13.4-1_all.deb ... Unpacking cmake-data (3.13.4-1) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../18-libarchive13_3.3.3-4_amd64.deb ... Unpacking libarchive13:amd64 (3.3.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../19-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../20-libkrb5support0_1.17-2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../21-libk5crypto3_1.17-2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../22-libssl1.1_1.1.1b-2_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1b-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../23-libkrb5-3_1.17-2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-2) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../24-libgssapi-krb5-2_1.17-2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. 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Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.24.1-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:mipsel (8.3.0-7) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up d-shlibs (0.84) ... Setting up libk5crypto3:amd64 (1.17-2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:amd64 (1.17-2) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3) ... Setting up m4 (1.4.18-2) ... Setting up libllvm6.0:amd64 (1:6.0.1-11) ... Setting up libclang1-6.0 (1:6.0.1-11) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up doxygen (1.8.13-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-2) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:amd64 (7.64.0-2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.13.4-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:mipsel (2.28-10) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libc6-dev:mipsel (2.28-10) ... Setting up libgcc1:mipsel (1:8.3.0-7) ... Setting up debhelper (12.1.1) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-1) ... Setting up libgomp1:mipsel (8.3.0-7) ... Setting up libatomic1:mipsel (8.3.0-7) ... Setting up libgcc-8-dev:mipsel (8.3.0-7) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-1) ... Setting up libstdc++6:mipsel (8.3.0-7) ... Setting up libjsoncpp1:mipsel (1.7.4-3) ... Setting up libstdc++-8-dev:mipsel (8.3.0-7) ... Setting up libjsoncpp-dev:mipsel (1.7.4-3) ... Setting up sbuild-build-depends-bamtools-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-7 gcc-8_8.3.0-7 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-mipsel-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-mipsel-cross_8.3.0-7cross1 linux-libc-dev_4.19.28-2 Package versions: adduser_3.118 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16 binutils-common_2.31.1-16 binutils-mipsel-linux-gnu_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-7 cpp-8-mipsel-linux-gnu_8.3.0-7cross1 cpp-mipsel-linux-gnu_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-mipsel_12.6 d-shlibs_0.84 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2019.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 doxygen_1.8.13-10 dpkg_1.19.6 dpkg-cross_2.6.15-2 dpkg-dev_1.19.6 dwz_0.12-3 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-7 g++-8-mipsel-linux-gnu_8.3.0-7cross1 g++-mipsel-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-7 gcc-8-base_8.3.0-7 gcc-8-cross-base_8.3.0-7cross1 gcc-8-mipsel-linux-gnu_8.3.0-7cross1 gcc-8-mipsel-linux-gnu-base_8.3.0-7cross1 gcc-mipsel-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 help2man_1.47.10 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-4 libasan5_8.3.0-7 libatomic1_8.3.0-7 libatomic1-mipsel-cross_8.3.0-7cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-dev_2.28-10 libc6-dev-mipsel-cross_2.28-10cross2 libc6-mipsel-cross_2.28-10cross2 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-7 libclang1-6.0_1:6.0.1-11 libcom-err2_1.45.0-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libcurl4_7.64.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.6 libedit2_3.1-20181209-1 libelf1_0.176-1 libexpat1_2.2.6-1 libext2fs2_1.45.0-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-7 libgcc-8-dev-mipsel-cross_8.3.0-7cross1 libgcc1_1:8.3.0-7 libgcc1-mipsel-cross_1:8.3.0-7cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-2 libgomp1_8.3.0-7 libgomp1-mipsel-cross_8.3.0-7cross1 libgpg-error0_1.35-1 libgssapi-krb5-2_1.17-2 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-7 libjsoncpp-dev_1.7.4-3 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-2 libkeyutils1_1.6-6 libkrb5-3_1.17-2 libkrb5support0_1.17-2 libldap-2.4-2_2.4.47+dfsg-3 libldap-common_2.4.47+dfsg-3 libllvm6.0_1:6.0.1-11 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-7 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-7 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libnghttp2-14_1.37.0-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libquadmath0_8.3.0-7 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.0-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1b-2 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-mipsel-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-mipsel-cross_8.3.0-7cross1 libsystemd0_241-3 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-7 libubsan1_8.3.0-7 libuchardet0_0.0.6-3 libudev1_241-3 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libuv1_1.24.1-1 libxapian30_1.4.11-1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.28-2 linux-libc-dev-mipsel-cross_4.19.28-2cross2 login_1:4.5-1.1 lsb-base_10.2019031300 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 procps_2:3.3.15-2 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Apr 5 10:00:14 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bamtools_2.5.1+dfsg-3.dsc dpkg-source: info: extracting bamtools in /<>/bamtools-2.5.1+dfsg dpkg-source: info: unpacking bamtools_2.5.1+dfsg.orig.tar.gz dpkg-source: info: unpacking bamtools_2.5.1+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying doxygen-tweak dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch dpkg-source: info: applying 0006-Doxygen-reproducibility dpkg-source: info: applying 0008_Cmake_Test.patch dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-23ccb0d4-fac0-4d0e-b82e-30c0167ddcf3 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bamtools dpkg-buildpackage: info: source version 2.5.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg' dh_auto_configure --arch -- -DBUILD_SHARED_LIBS=on cd obj-mipsel-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=mipsel -DCMAKE_C_COMPILER=mipsel-linux-gnu-gcc -DCMAKE_CXX_COMPILER=mipsel-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/mipsel-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/mipsel-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/mipsel-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/mipsel-linux-gnu -DBUILD_SHARED_LIBS=on .. -- The CXX compiler identification is GNU 8.3.0 -- Check for working CXX compiler: /usr/bin/mipsel-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/mipsel-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:22 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Found PkgConfig: /usr/bin/mipsel-linux-gnu-pkg-config (found version "") -- Checking for one of the modules 'jsoncpp>=1' Did NOT find system JsonCpp, instead using bundled version -- Found ZLIB: /usr/lib/mipsel-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_COMPILER CMAKE_EXPORT_NO_PACKAGE_REGISTRY PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg' dh_auto_build -a cd obj-mipsel-linux-gnu && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mipsel-linux-gnu-pkg-config CXX=mipsel-linux-gnu-g\+\+ CC=mipsel-linux-gnu-gcc make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' /usr/bin/cmake -S/<>/bamtools-2.5.1+dfsg -B/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/CMakeFiles /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/api /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= Scanning dependencies of target BamTools make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' [ 1%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.cpp [ 3%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp [ 5%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamReader.cpp [ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamWriter.cpp [ 8%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp [ 10%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp [ 11%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamProgramChain.cpp [ 13%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp [ 15%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp [ 16%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp [ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp [ 20%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamHeader_p.cpp [ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp [ 23%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp [ 25%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamReader_p.cpp [ 27%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamWriter_p.cpp [ 28%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp [ 30%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp [ 32%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp [ 33%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp [ 35%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamFile_p.cpp [ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamFtp_p.cpp [ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamHttp_p.cpp [ 40%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamPipe_p.cpp [ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BgzfStream_p.cpp [ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/ByteArray_p.cpp [ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function 'void BamTools::Internal::HostAddress::Clear()': /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:273:49: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct BamTools::Internal::IPv6Address'; use assignment or value-initialization instead [-Wclass-memaccess] memset(&m_ip6Address, 0, sizeof(IPv6Address)); ^ In file included from /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:10: /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.h:31:8: note: 'struct BamTools::Internal::IPv6Address' declared here struct IPv6Address ^~~~~~~~~~~ [ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostInfo_p.cpp [ 49%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HttpHeader_p.cpp [ 50%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp [ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp [ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocket_p.cpp [ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp [ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp [ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp [ 61%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp [ 62%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp [ 64%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/utils/BamException_p.cpp [ 66%] Linking CXX shared library libbamtools.so cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 /usr/bin/mipsel-linux-gnu-g++ -fPIC -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbamtools.so.2.5.1 -o libbamtools.so.2.5.1 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.1 libbamtools.so.2.5.1 libbamtools.so make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' [ 66%] Built target BamTools make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/utils /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/utils /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color= Scanning dependencies of target BamTools-utils make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' [ 67%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/utils && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_fasta.cpp [ 69%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/utils && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_options.cpp [ 71%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/utils && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_pileup_engine.cpp [ 72%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/utils && /usr/bin/mipsel-linux-gnu-g++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_utilities.cpp [ 74%] Linking CXX static library libbamtools-utils.a cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1 /usr/bin/mipsel-linux-gnu-ar qc libbamtools-utils.a CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o /usr/bin/mipsel-linux-gnu-ranlib libbamtools-utils.a make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' [ 74%] Built target BamTools-utils make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color= Scanning dependencies of target bamtools_cmd make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' [ 76%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_convert.cpp [ 77%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_count.cpp [ 79%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_coverage.cpp [ 81%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_filter.cpp [ 83%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_header.cpp [ 84%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_index.cpp [ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_merge.cpp [ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_random.cpp [ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_resolve.cpp [ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_revert.cpp [ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_sort.cpp [ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_split.cpp [ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_stats.cpp [ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/mipsel-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools.cpp [100%] Linking CXX executable bamtools cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1 /usr/bin/mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o bamtools -Wl,-rpath,/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api: ../utils/libbamtools-utils.a -ljsoncpp ../api/libbamtools.so.2.5.1 make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' [100%] Built target bamtools_cmd make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg' cd obj-* && ln -s src/toolkit/ bin dh_auto_test --arch make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a cd obj-mipsel-linux-gnu && make -j1 install DESTDIR=/<>/bamtools-2.5.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' /usr/bin/cmake -S/<>/bamtools-2.5.1+dfsg -B/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/CMakeFiles /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/api /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools.dir/build'. make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' [ 66%] Built target BamTools make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/utils /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/utils /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' make[3]: Nothing to be done for 'src/utils/CMakeFiles/BamTools-utils.dir/build'. make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' [ 74%] Built target BamTools-utils make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' make[3]: Nothing to be done for 'src/toolkit/CMakeFiles/bamtools_cmd.dir/build'. make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' [100%] Built target bamtools_cmd make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/mipsel-linux-gnu/pkgconfig/bamtools-1.pc -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/mipsel-linux-gnu/libbamtools.so.2.5.1 -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/mipsel-linux-gnu/libbamtools.so -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools -- Set runtime path of "/<>/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools" to "" make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-mipsel-linux-gnu' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'bamtools' in '../bamtools_2.5.1+dfsg-3_mipsel.deb'. dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.5.1+dfsg-3_mipsel.deb'. dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.1+dfsg-3_mipsel.deb'. dpkg-deb: building package 'libbamtools2.5.1' in '../libbamtools2.5.1_2.5.1+dfsg-3_mipsel.deb'. dpkg-deb: building package 'libbamtools2.5.1-dbgsym' in '../libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_mipsel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../bamtools_2.5.1+dfsg-3_mipsel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-05-05T04:58:42Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-h4CSnG/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-bamtools-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-h4CSnG/apt_archive ./ InRelease Get:2 copy:/<>/resolver-h4CSnG/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-h4CSnG/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-h4CSnG/apt_archive ./ Sources [793 B] Get:5 copy:/<>/resolver-h4CSnG/apt_archive ./ Packages [869 B] Fetched 2625 B in 0s (157 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:mipsel t1utils 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 6232 kB of archives. After this operation, 16.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-h4CSnG/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-1 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-2 [640 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-1 [867 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.13.0 [1175 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6232 kB in 0s (28.2 MB/s) Selecting previously unselected package netbase. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bamtools_2.5.1+dfsg-3_mipsel.changes: ------------------------------------- Format: 1.8 Date: Thu, 05 Apr 2018 11:54:57 +0200 Source: bamtools Binary: bamtools bamtools-dbgsym libbamtools-dev libbamtools2.5.1 libbamtools2.5.1-dbgsym Built-For-Profiles: cross nocheck Architecture: mipsel Version: 2.5.1+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: bamtools - toolkit for manipulating BAM (genome alignment) files libbamtools-dev - C++ API for manipulating BAM (genome alignment) files libbamtools2.5.1 - dynamic library for manipulating BAM (genome alignment) files Closes: 894886 Changes: bamtools (2.5.1+dfsg-3) unstable; urgency=medium . * Point Vcs fields to salsa.debian.org * Use Breaks+Replaces: 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libbamtools-dev_2.5.1+dfsg-3_mipsel.deb d95c31abac3bb56c19b208df9b84ae473764d6f6 2959960 libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_mipsel.deb 2415f4a6e5607aaa81b068a286e587dfa4fc181f 139196 libbamtools2.5.1_2.5.1+dfsg-3_mipsel.deb Checksums-Sha256: 0fc504ac0e83e5e0800ffcbb0bea911ac283deda058aea4e43032332320701a1 3669708 bamtools-dbgsym_2.5.1+dfsg-3_mipsel.deb 2fe599e7495a2cb880ad6a246f538fa1541eb172e0b9cea5a58f9553992152b4 144512 bamtools_2.5.1+dfsg-3_mipsel.deb 7715aae1eac2fc1fe1822f00061b4e23faf5ca3da26f5d72a251a1df54789c70 21840 libbamtools-dev_2.5.1+dfsg-3_mipsel.deb 4a2ee9c8c96297c0d5aa974b941738aa49a401ca6d3ac099fd788ad935b19655 2959960 libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_mipsel.deb 62522c974150ae920db6b333ccd382e815f1573e9a5b022cbf389569fd50a8d9 139196 libbamtools2.5.1_2.5.1+dfsg-3_mipsel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 05 May 2019 04:58:41 +0000 Build-Path: /<>/bamtools-2.5.1+dfsg Installed-Build-Depends: adduser (= 3.118), apt (= 1.8.0), autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.2), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.31.1-16), binutils-common (= 2.31.1-16), binutils-x86-64-linux-gnu (= 2.31.1-16), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), cmake (= 3.13.4-1), cmake-data (= 3.13.4-1), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-7), d-shlibs (= 0.84), dash (= 0.5.10.2-5), debconf (= 1.5.71), debhelper (= 12.1.1), debian-archive-keyring (= 2019.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.2-1), diffutils (= 1:3.7-3), doxygen (= 1.8.13-10), dpkg (= 1.19.6), dpkg-dev (= 1.19.6), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-7), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-7), gcc-8-base (= 8.3.0-7), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), gpgv (= 2.2.13-1), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), help2man (= 1.47.10), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libapt-pkg5.0 (= 1.8.0), libarchive-zip-perl (= 1.64-1), libarchive13 (= 3.3.3-4), libasan5 (= 8.3.0-7), libatomic1 (= 8.3.0-7), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.4-3), libaudit1 (= 1:2.8.4-3), libbinutils (= 2.31.1-16), libblkid1 (= 2.33.1-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.3.0-7), libclang1-6.0 (= 1:6.0.1-11), libcom-err2 (= 1.45.0-1), libcroco3 (= 0.6.12-3), libcurl4 (= 7.64.0-2), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.6), libedit2 (= 3.1-20181209-1), libelf1 (= 0.176-1), libexpat1 (= 2.2.6-1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.2-1), libgcc-8-dev (= 8.3.0-7), libgcc1 (= 1:8.3.0-7), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4), libgdbm6 (= 1.18.1-4), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.7-2), libgomp1 (= 8.3.0-7), libgpg-error0 (= 1.35-1), libgssapi-krb5-2 (= 1.17-2), libhogweed4 (= 3.4.1-1), libicu63 (= 63.1-6), libidn2-0 (= 2.0.5-1), libisl19 (= 0.20-2), libitm1 (= 8.3.0-7), libjsoncpp-dev (= 1.7.4-3), libjsoncpp1 (= 1.7.4-3), libk5crypto3 (= 1.17-2), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-2), libkrb5support0 (= 1.17-2), libldap-2.4-2 (= 2.4.47+dfsg-3), libldap-common (= 2.4.47+dfsg-3), libllvm6.0 (= 1:6.0.1-11), liblocale-gettext-perl (= 1.07-3+b4), liblsan0 (= 8.3.0-7), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-7), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libnettle6 (= 3.4.1-1), libnghttp2-14 (= 1.37.0-1), libp11-kit0 (= 0.23.15-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libprocps7 (= 2:3.3.15-2), libpsl5 (= 0.20.2-2), libquadmath0 (= 8.3.0-7), librhash0 (= 1.3.8-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2), libsasl2-2 (= 2.1.27+dfsg-1), libsasl2-modules-db (= 2.1.27+dfsg-1), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsemanage-common (= 2.8-2), libsemanage1 (= 2.8-2), libsepol1 (= 2.8-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1b-2), libstdc++-8-dev (= 8.3.0-7), libstdc++6 (= 8.3.0-7), libsystemd0 (= 241-3), libtasn1-6 (= 4.13-3), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-7), libubsan1 (= 8.3.0-7), libuchardet0 (= 0.0.6-3), libudev1 (= 241-3), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libuv1 (= 1.24.1-1), libxapian30 (= 1.4.11-1), libxml2 (= 2.9.4+dfsg1-7+b3), libzstd1 (= 1.3.8+dfsg-3), linux-libc-dev (= 4.19.28-2), login (= 1:4.5-1.1), lsb-base (= 10.2019031300), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), passwd (= 1:4.5-1.1), patch (= 2.7.6-3), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), procps (= 2:3.3.15-2), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-6), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1), zlib1g-dev (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1522922097" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bamtools-dbgsym_2.5.1+dfsg-3_mipsel.deb --------------------------------------- new Debian package, version 2.0. size 3669708 bytes: control archive=540 bytes. 386 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: bamtools-dbgsym Source: bamtools Version: 2.5.1+dfsg-3 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 3699 Depends: bamtools (= 2.5.1+dfsg-3) Section: debug Priority: optional Description: debug symbols for bamtools Build-Ids: 1366457c35d4866812117a1c62ad8c1bf90823dc drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/debug/.build-id/13/ -rw-r--r-- root/root 3777120 2018-04-05 09:54 ./usr/lib/debug/.build-id/13/66457c35d4866812117a1c62ad8c1bf90823dc.debug drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-04-05 09:54 ./usr/share/doc/bamtools-dbgsym -> bamtools bamtools_2.5.1+dfsg-3_mipsel.deb -------------------------------- new Debian package, version 2.0. size 144512 bytes: control archive=1512 bytes. 1792 bytes, 37 lines control 622 bytes, 9 lines md5sums Package: bamtools Version: 2.5.1+dfsg-3 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 601 Depends: libbamtools2.5.1, libc6 (>= 2.4), libgcc1 (>= 1:3.0), libjsoncpp1 (>= 1.7.4), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/pezmaster31/bamtools/wiki Description: toolkit for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the bamtools command-line toolkit. . Available bamtools commands: convert Converts between BAM and a number of other formats count Prints number of alignments in BAM file(s) coverage Prints coverage statistics from the input BAM file filter Filters BAM file(s) by user-specified criteria header Prints BAM header information index Generates index for BAM file merge Merge multiple BAM files into single file random Select random alignments from existing BAM file(s), intended more as a testing tool. resolve Resolves paired-end reads (marking the IsProperPair flag as needed) revert Removes duplicate marks and restores original base qualities sort Sorts the BAM file according to some criteria split Splits a BAM file on user-specified property, creating a new BAM output file for each value found stats Prints some basic statistics from input BAM file(s) drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/bin/ -rwxr-xr-x root/root 592928 2018-04-05 09:54 ./usr/bin/bamtools drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/bamtools/ -rw-r--r-- root/root 262 2018-04-05 09:54 ./usr/share/doc/bamtools/README.test -rw-r--r-- root/root 1972 2018-04-05 09:54 ./usr/share/doc/bamtools/changelog.Debian.gz -rw-r--r-- root/root 1665 2018-04-05 09:54 ./usr/share/doc/bamtools/copyright -rw-r--r-- root/root 352 2018-04-05 09:54 ./usr/share/doc/bamtools/filter_script -rw-r--r-- root/root 970 2018-04-05 09:54 ./usr/share/doc/bamtools/run-unit-test -rw-r--r-- root/root 375 2018-04-05 09:54 ./usr/share/doc/bamtools/sam_spec_example.bam drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 71 2018-04-05 09:54 ./usr/share/lintian/overrides/bamtools drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/man/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/man/man1/ -rw-r--r-- root/root 792 2018-04-05 09:54 ./usr/share/man/man1/bamtools.1.gz libbamtools-dev_2.5.1+dfsg-3_mipsel.deb --------------------------------------- new Debian package, version 2.0. size 21840 bytes: control archive=1504 bytes. 995 bytes, 25 lines control 1729 bytes, 23 lines md5sums Package: libbamtools-dev Source: bamtools Version: 2.5.1+dfsg-3 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 130 Depends: libbamtools2.5.1 (= 2.5.1+dfsg-3) Suggests: libbamtools-doc (= 2.5.1+dfsg-3) Breaks: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/pezmaster31/bamtools/wiki Description: C++ API for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the developers API package. drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/bamtools/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/bamtools/api/ -rw-r--r-- root/root 848 2017-12-23 18:10 ./usr/include/bamtools/api/BamAlgorithms.h -rw-r--r-- root/root 22766 2018-04-05 09:54 ./usr/include/bamtools/api/BamAlignment.h -rw-r--r-- root/root 14259 2017-12-23 18:10 ./usr/include/bamtools/api/BamAux.h -rw-r--r-- root/root 9234 2017-12-23 18:10 ./usr/include/bamtools/api/BamConstants.h -rw-r--r-- root/root 2754 2017-12-23 18:10 ./usr/include/bamtools/api/BamIndex.h -rw-r--r-- root/root 4242 2017-12-23 18:10 ./usr/include/bamtools/api/BamMultiReader.h -rw-r--r-- root/root 3780 2017-12-23 18:10 ./usr/include/bamtools/api/BamReader.h -rw-r--r-- root/root 1950 2017-12-23 18:10 ./usr/include/bamtools/api/BamWriter.h -rw-r--r-- root/root 2818 2017-12-23 18:10 ./usr/include/bamtools/api/IBamIODevice.h -rw-r--r-- root/root 3491 2017-12-23 18:10 ./usr/include/bamtools/api/SamConstants.h -rw-r--r-- root/root 2899 2017-12-23 18:10 ./usr/include/bamtools/api/SamHeader.h -rw-r--r-- root/root 2332 2017-12-23 18:10 ./usr/include/bamtools/api/SamProgram.h -rw-r--r-- root/root 2897 2017-12-23 18:10 ./usr/include/bamtools/api/SamProgramChain.h -rw-r--r-- root/root 3266 2017-12-23 18:10 ./usr/include/bamtools/api/SamReadGroup.h -rw-r--r-- root/root 3083 2017-12-23 18:10 ./usr/include/bamtools/api/SamReadGroupDictionary.h -rw-r--r-- root/root 2570 2017-12-23 18:10 ./usr/include/bamtools/api/SamSequence.h -rw-r--r-- root/root 3043 2017-12-23 18:10 ./usr/include/bamtools/api/SamSequenceDictionary.h drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/bamtools/api/algorithms/ -rw-r--r-- root/root 12242 2017-12-23 18:10 ./usr/include/bamtools/api/algorithms/Sort.h -rw-r--r-- root/root 754 2017-12-23 18:10 ./usr/include/bamtools/api/api_global.h drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/bamtools/shared/ -rw-r--r-- root/root 2346 2017-12-23 18:10 ./usr/include/bamtools/shared/bamtools_global.h drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/mipsel-linux-gnu/ lrwxrwxrwx root/root 0 2018-04-05 09:54 ./usr/lib/mipsel-linux-gnu/libbamtools.so -> libbamtools.so.2.5.1 drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/cmake/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/cmake/bamtools/ -rw-r--r-- root/root 1574 2018-04-05 09:54 ./usr/share/cmake/bamtools/bamtools-config.cmake drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/libbamtools-dev/ -rw-r--r-- root/root 1972 2018-04-05 09:54 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz -rw-r--r-- root/root 1665 2018-04-05 09:54 ./usr/share/doc/libbamtools-dev/copyright libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_mipsel.deb ----------------------------------------------- new Debian package, version 2.0. size 2959960 bytes: control archive=560 bytes. 427 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libbamtools2.5.1-dbgsym Source: bamtools Version: 2.5.1+dfsg-3 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 3019 Depends: libbamtools2.5.1 (= 2.5.1+dfsg-3) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libbamtools2.5.1 Build-Ids: 3e84dfbc94c00ae4e1434a45a894b0d8910aa60f drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/debug/.build-id/3e/ -rw-r--r-- root/root 3080992 2018-04-05 09:54 ./usr/lib/debug/.build-id/3e/84dfbc94c00ae4e1434a45a894b0d8910aa60f.debug drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1-dbgsym -> libbamtools2.5.1 libbamtools2.5.1_2.5.1+dfsg-3_mipsel.deb ---------------------------------------- new Debian package, version 2.0. size 139196 bytes: control archive=1056 bytes. 904 bytes, 22 lines control 240 bytes, 3 lines md5sums 35 bytes, 1 lines shlibs 67 bytes, 2 lines triggers Package: libbamtools2.5.1 Source: bamtools Version: 2.5.1+dfsg-3 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 574 Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/pezmaster31/bamtools/wiki Description: dynamic library for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the runtime library. drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/mipsel-linux-gnu/ -rw-r--r-- root/root 572908 2018-04-05 09:54 ./usr/lib/mipsel-linux-gnu/libbamtools.so.2.5.1 drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1/ -rw-r--r-- root/root 1972 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1/changelog.Debian.gz -rw-r--r-- root/root 1665 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 107076 Build-Time: 130 Distribution: unstable Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 30 Job: bamtools_2.5.1+dfsg-3 Lintian: pass Machine Architecture: amd64 Package: bamtools Package-Time: 171 Source-Version: 2.5.1+dfsg-3 Space: 107076 Status: successful Version: 2.5.1+dfsg-3 -------------------------------------------------------------------------------- Finished at 2019-05-05T04:58:42Z Build needed 00:02:51, 107076k disk space