sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | bamtools 2.5.1+dfsg-3 (arm64) Sat, 17 Aug 2019 18:44:50 +0000 | +==============================================================================+ Package: bamtools Version: 2.5.1+dfsg-3 Source Version: 2.5.1+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-0020eb12-6ba0-45a5-b6d0-0d89df79e739' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-17-0816.22.pdiff [1012 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-17-1451.02.pdiff [20.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-17-0816.22.pdiff [666 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-17-1451.02.pdiff [62.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-17-1451.02.pdiff [20.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-17-1451.02.pdiff [62.8 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8226 kB] Fetched 8516 kB in 2s (4077 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bamtools.git Please use: git clone https://salsa.debian.org/med-team/bamtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 210 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main bamtools 2.5.1+dfsg-3 (dsc) [2392 B] Get:2 http://debian.oregonstate.edu/debian unstable/main bamtools 2.5.1+dfsg-3 (tar) [197 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main bamtools 2.5.1+dfsg-3 (diff) [10.7 kB] Fetched 210 kB in 0s (4461 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/bamtools-nJ7Raw/bamtools-2.5.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bamtools-nJ7Raw' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-uD9v3W/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-uD9v3W/apt_archive ./ InRelease Get:2 copy:/<>/resolver-uD9v3W/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-uD9v3W/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-uD9v3W/apt_archive ./ Sources [362 B] Get:5 copy:/<>/resolver-uD9v3W/apt_archive ./ Packages [451 B] Fetched 1770 B in 0s (88.0 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-aarch64-linux-gnu cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-9-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-9-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sensible-utils ucf Suggested packages: binutils-doc gcc-9-locales cpp-doc binutils-multiarch gcc-9-doc libstdc++6-9-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev autoconf automake libtool flex bison gdb-aarch64-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-aarch64-linux-gnu cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-9-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-9-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sbuild-build-depends-core-dummy:arm64 sensible-utils ucf 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 43.2 MB of archives. After this operation, 168 MB of additional disk space will be used. Get:1 copy:/<>/resolver-uD9v3W/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.32.51.20190813-1 [2984 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.2.1-1cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.2.1-1cross1 [6531 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-1cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.28-10cross4 [1312 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:9.2.1-1cross1 [34.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 9.2.1-1cross1 [76.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 9.2.1-1cross1 [24.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 9.2.1-1cross1 [8648 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.2.1-1cross1 [347 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 9.2.1-1cross1 [121 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 9.2.1-1cross1 [267 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 9.2.1-1cross1 [415 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 9.2.1-1cross1 [117 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.2.1-1cross1 [879 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.2.1-1cross1 [6887 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-1 [1456 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.2.7-1cross4 [1305 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.28-10cross4 [2324 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.2.1-1cross1 [1630 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.2.1-1cross1 [7106 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-1 [1176 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 43.2 MB in 1s (56.9 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 13038 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../43-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../44-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-arm64. Preparing to unpack .../45-crossbuild-essential-arm64_12.6_all.deb ... Unpacking crossbuild-essential-arm64 (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:arm64. Preparing to unpack .../46-sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up gcc-9-aarch64-linux-gnu-base:amd64 (9.2.1-1cross1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up binutils-aarch64-linux-gnu (2.32.51.20190813-1) ... Setting up cpp-9-aarch64-linux-gnu (9.2.1-1cross1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cpp-aarch64-linux-gnu (4:9.2.1-1) ... Setting up cross-config (2.6.15-3) ... Setting up libc6-arm64-cross (2.28-10cross4) ... Setting up gcc-9-cross-base (9.2.1-1cross1) ... Setting up linux-libc-dev-arm64-cross (5.2.7-1cross4) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libatomic1-arm64-cross (9.2.1-1cross1) ... Setting up libgcc1-arm64-cross (1:9.2.1-1cross1) ... Setting up liblsan0-arm64-cross (9.2.1-1cross1) ... Setting up libgomp1-arm64-cross (9.2.1-1cross1) ... Setting up libtsan0-arm64-cross (9.2.1-1cross1) ... Setting up libc6-dev-arm64-cross (2.28-10cross4) ... Setting up libasan5-arm64-cross (9.2.1-1cross1) ... Setting up libstdc++6-arm64-cross (9.2.1-1cross1) ... Setting up libitm1-arm64-cross (9.2.1-1cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libubsan1-arm64-cross (9.2.1-1cross1) ... Setting up libgcc-9-dev-arm64-cross (9.2.1-1cross1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-9-aarch64-linux-gnu (9.2.1-1cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-9-dev-arm64-cross (9.2.1-1cross1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-1) ... Setting up g++-9-aarch64-linux-gnu (9.2.1-1cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.6) ... Setting up sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-uD9v3W/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-uD9v3W/apt_archive ./ InRelease Get:2 copy:/<>/resolver-uD9v3W/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-uD9v3W/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-uD9v3W/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-uD9v3W/apt_archive ./ Packages [570 B] Fetched 2017 B in 0s (100 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:arm64 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-uD9v3W/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:arm64. (Reading database ... 16382 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/<>/resolver-uD9v3W/apt_archive/sbuild-build-depends-bamtools-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-bamtools-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-uD9v3W/apt_archive ./ InRelease Get:2 copy:/<>/resolver-uD9v3W/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-uD9v3W/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-uD9v3W/apt_archive ./ Sources [674 B] Get:5 copy:/<>/resolver-uD9v3W/apt_archive ./ Packages [754 B] Fetched 2391 B in 0s (118 kB/s) Reading package lists... Reading package lists... Install bamtools build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz gcc-9-base:arm64 gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libasan5:arm64 libatomic1:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libclang1-6.0 libcroco3 libcurl4 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libgcc-9-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libgssapi-krb5-2 libitm1:arm64 libjsoncpp-dev:arm64 libjsoncpp1 libjsoncpp1:arm64 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libllvm6.0 liblsan0:arm64 libncurses6 libnghttp2-14 libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libstdc++-9-dev:arm64 libstdc++6:arm64 libsub-override-perl libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 libuv1 libxapian30 linux-libc-dev:arm64 lsb-base m4 man-db po-debconf procps zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 krb5-doc krb5-user libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz gcc-9-base:arm64 gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libasan5:arm64 libatomic1:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libclang1-6.0 libcroco3 libcurl4 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libgcc-9-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libgssapi-krb5-2 libitm1:arm64 libjsoncpp-dev:arm64 libjsoncpp1 libjsoncpp1:arm64 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libllvm6.0 liblsan0:arm64 libncurses6 libnghttp2-14 libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libstdc++-9-dev:arm64 libstdc++6:arm64 libsub-override-perl libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 libuv1 libxapian30 linux-libc-dev:arm64 lsb-base m4 man-db po-debconf procps sbuild-build-depends-bamtools-dummy:arm64 zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 57.1 MB of archives. After this operation, 243 MB of additional disk space will be used. Get:1 copy:/<>/resolver-uD9v3W/apt_archive ./ sbuild-build-depends-bamtools-dummy 0.invalid.0 [916 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.6.1-1 [1295 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.2.1-1 [192 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 lsb-base all 11.1.0 [28.7 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.3.3-4 [314 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1 [69.0 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1 [106 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.48+dfsg-1 [226 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.39.2-1 [82.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.65.3-1 [336 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.7-1 [106 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.30.1-1 [116 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.86 [17.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.5.0-1 [22.8 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.5.0-1 [14.1 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-2 [1295 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.5 [1034 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20190324-1 [94.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm6.0 amd64 1:6.0.1-11 [14.8 MB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libclang1-6.0 amd64 1:6.0.1-11 [7065 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxapian30 amd64 1.4.11-1 [1104 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 doxygen amd64 1.8.13-10 [3985 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.11 [180 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:9.2.1-1 [34.1 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.28-10 [2521 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.2.1-1 [354 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 9.2.1-1 [8832 B] Get:67 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.2.7-1 [1209 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.28-10 [2324 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 9.2.1-1 [78.5 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 9.2.1-1 [24.7 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 9.2.1-1 [122 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 9.2.1-1 [274 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 9.2.1-1 [454 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 9.2.1-1 [118 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.2.1-1 [883 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main arm64 libjsoncpp1 arm64 1.7.4-3 [71.0 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main arm64 libjsoncpp-dev arm64 1.7.4-3 [85.5 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.2.1-1 [1630 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-1+b1 [88.4 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1+b1 [208 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.1 MB in 1s (69.1 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 16382 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.6.1-1_amd64.deb ... Unpacking man-db (2.8.6.1-1) ... 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Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.30.1-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up d-shlibs (0.86) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up gcc-9-base:arm64 (9.2.1-1) ... Setting up libfile-stripnondeterminism-perl (1.5.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up libedit2:amd64 (3.1-20190324-1) ... Setting up libldap-2.4-2:amd64 (2.4.48+dfsg-1) ... Setting up m4 (1.4.18-2) ... Setting up libllvm6.0:amd64 (1:6.0.1-11) ... Setting up libclang1-6.0 (1:6.0.1-11) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up doxygen (1.8.13-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:amd64 (7.65.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.6.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.13.4-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:arm64 (2.28-10) ... Setting up dh-strip-nondeterminism (1.5.0-1) ... Setting up libc6-dev:arm64 (2.28-10) ... Setting up libitm1:arm64 (9.2.1-1) ... Setting up libgcc1:arm64 (1:9.2.1-1) ... Setting up debhelper (12.5) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-1+b1) ... Setting up libgomp1:arm64 (9.2.1-1) ... Setting up libasan5:arm64 (9.2.1-1) ... Setting up libatomic1:arm64 (9.2.1-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1+b1) ... Setting up libstdc++6:arm64 (9.2.1-1) ... Setting up liblsan0:arm64 (9.2.1-1) ... Setting up libjsoncpp1:arm64 (1.7.4-3) ... Setting up libtsan0:arm64 (9.2.1-1) ... Setting up libjsoncpp-dev:arm64 (1.7.4-3) ... Setting up libubsan1:arm64 (9.2.1-1) ... Setting up libgcc-9-dev:arm64 (9.2.1-1) ... Setting up libstdc++-9-dev:arm64 (9.2.1-1) ... Setting up sbuild-build-depends-bamtools-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190813-1 dpkg-dev_1.19.7 g++-8_8.3.0-19 g++-9_9.2.1-1 gcc-8_8.3.0-19 gcc-9_9.2.1-1 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-19 libstdc++-9-dev_9.2.1-1 libstdc++-9-dev-arm64-cross_9.2.1-1cross1 libstdc++6_9.2.1-1 libstdc++6-arm64-cross_9.2.1-1cross1 linux-libc-dev_5.2.7-1 Package versions: adduser_3.118 apt_1.8.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190813-1 binutils-aarch64-linux-gnu_2.32.51.20190813-1 binutils-common_2.32.51.20190813-1 binutils-x86-64-linux-gnu_2.32.51.20190813-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.6 bzip2_1.0.6-9.2 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3+b1 cpp_4:9.2.1-1 cpp-8_8.3.0-19 cpp-9_9.2.1-1 cpp-9-aarch64-linux-gnu_9.2.1-1cross1 cpp-aarch64-linux-gnu_4:9.2.1-1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.6 d-shlibs_0.86 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.5 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.5.0-1 diffutils_1:3.7-3 doxygen_1.8.13-10 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.3-4 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.6.0+git+20190510-2 g++_4:9.2.1-1 g++-8_8.3.0-19 g++-9_9.2.1-1 g++-9-aarch64-linux-gnu_9.2.1-1cross1 g++-aarch64-linux-gnu_4:9.2.1-1 gcc_4:9.2.1-1 gcc-8_8.3.0-19 gcc-8-base_8.3.0-19 gcc-9_9.2.1-1 gcc-9-aarch64-linux-gnu_9.2.1-1cross1 gcc-9-aarch64-linux-gnu-base_9.2.1-1cross1 gcc-9-base_9.2.1-1 gcc-9-cross-base_9.2.1-1cross1 gcc-aarch64-linux-gnu_4:9.2.1-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 help2man_1.47.11 hostname_3.21 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.3 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-4 libasan5_9.2.1-1 libasan5-arm64-cross_9.2.1-1cross1 libatomic1_9.2.1-1 libatomic1-arm64-cross_9.2.1-1cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190813-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-arm64-cross_2.28-10cross4 libc6-dev_2.28-10 libc6-dev-arm64-cross_2.28-10cross4 libcap-ng0_0.7.9-2 libcc1-0_9.2.1-1 libclang1-6.0_1:6.0.1-11 libcom-err2_1.45.3-4 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libcurl4_7.65.3-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libedit2_3.1-20190324-1 libelf1_0.176-1.1 libexpat1_2.2.7-1 libext2fs2_1.45.3-4 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.5.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-19 libgcc-9-dev_9.2.1-1 libgcc-9-dev-arm64-cross_9.2.1-1cross1 libgcc1_1:9.2.1-1 libgcc1-arm64-cross_1:9.2.1-1cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4+b1 libgdbm6_1.18.1-4+b1 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-4 libgomp1_9.2.1-1 libgomp1-arm64-cross_9.2.1-1cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.2.1-1 libitm1-arm64-cross_9.2.1-1cross1 libjsoncpp-dev_1.7.4-3 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1 libldap-common_2.4.48+dfsg-1 libllvm6.0_1:6.0.1-11 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.2.1-1 liblsan0-arm64-cross_9.2.1-1cross1 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-19 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnghttp2-14_1.39.2-1 libp11-kit0_0.23.16.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libquadmath0_9.2.1-1 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.3-4 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-19 libstdc++-9-dev_9.2.1-1 libstdc++-9-dev-arm64-cross_9.2.1-1cross1 libstdc++6_9.2.1-1 libstdc++6-arm64-cross_9.2.1-1cross1 libsub-override-perl_0.09-2 libsystemd0_241-7 libtasn1-6_4.14-2 libtinfo6_6.1+20190803-1 libtool_2.4.6-10 libtsan0_9.2.1-1 libtsan0-arm64-cross_9.2.1-1cross1 libubsan1_9.2.1-1 libubsan1-arm64-cross_9.2.1-1cross1 libuchardet0_0.0.6-3 libudev1_241-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.30.1-1 libxapian30_1.4.11-1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_5.2.7-1 linux-libc-dev-arm64-cross_5.2.7-1cross4 login_1:4.7-2 logsave_1.45.3-4 lsb-base_11.1.0 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6.1-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 procps_2:3.3.15-2 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.95-5 tar_1.30+dfsg-6+b1 tzdata_2019b-2 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Apr 5 10:00:14 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bamtools_2.5.1+dfsg-3.dsc dpkg-source: info: extracting bamtools in /<>/bamtools-2.5.1+dfsg dpkg-source: info: unpacking bamtools_2.5.1+dfsg.orig.tar.gz dpkg-source: info: unpacking bamtools_2.5.1+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying doxygen-tweak dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch dpkg-source: info: applying 0006-Doxygen-reproducibility dpkg-source: info: applying 0008_Cmake_Test.patch dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-0020eb12-6ba0-45a5-b6d0-0d89df79e739 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bamtools dpkg-buildpackage: info: source version 2.5.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg' dh_auto_configure --arch -- -DBUILD_SHARED_LIBS=on cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=aarch64 -DCMAKE_C_COMPILER=aarch64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=aarch64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/aarch64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/aarch64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/aarch64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_SHARED_LIBS=on .. -- The CXX compiler identification is GNU 9.2.1 -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:22 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Found PkgConfig: /usr/bin/aarch64-linux-gnu-pkg-config (found version "") -- Checking for one of the modules 'jsoncpp>=1' Did NOT find system JsonCpp, instead using bundled version -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_COMPILER CMAKE_EXPORT_NO_PACKAGE_REGISTRY PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg' dh_auto_build -a cd obj-aarch64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<>/bamtools-2.5.1+dfsg -B/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/api /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= Scanning dependencies of target BamTools make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.cpp [ 3%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp [ 5%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamReader.cpp [ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamWriter.cpp [ 8%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp [ 10%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp [ 11%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamProgramChain.cpp [ 13%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp [ 15%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp [ 16%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp [ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp [ 20%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamHeader_p.cpp [ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp [ 23%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp [ 25%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamReader_p.cpp [ 27%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamWriter_p.cpp [ 28%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp [ 30%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp [ 32%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp [ 33%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp [ 35%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamFile_p.cpp [ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamFtp_p.cpp [ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamHttp_p.cpp [ 40%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamPipe_p.cpp [ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BgzfStream_p.cpp [ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/ByteArray_p.cpp [ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function 'void BamTools::Internal::HostAddress::Clear()': /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:273:49: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct BamTools::Internal::IPv6Address'; use assignment or value-initialization instead [-Wclass-memaccess] 273 | memset(&m_ip6Address, 0, sizeof(IPv6Address)); | ^ In file included from /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:10: /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.h:31:8: note: 'struct BamTools::Internal::IPv6Address' declared here 31 | struct IPv6Address | ^~~~~~~~~~~ [ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostInfo_p.cpp [ 49%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HttpHeader_p.cpp [ 50%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp [ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp [ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocket_p.cpp [ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp [ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp [ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp [ 61%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp [ 62%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp [ 64%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/utils/BamException_p.cpp [ 66%] Linking CXX shared library libbamtools.so cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -fPIC -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbamtools.so.2.5.1 -o libbamtools.so.2.5.1 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.1 libbamtools.so.2.5.1 libbamtools.so make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Built target BamTools make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/utils /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color= Scanning dependencies of target BamTools-utils make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [ 67%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_fasta.cpp [ 69%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_options.cpp [ 71%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_pileup_engine.cpp [ 72%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils && /usr/bin/aarch64-linux-gnu-g++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_utilities.cpp [ 74%] Linking CXX static library libbamtools-utils.a cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-ar qc libbamtools-utils.a CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o /usr/bin/aarch64-linux-gnu-ranlib libbamtools-utils.a make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target BamTools-utils make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color= Scanning dependencies of target bamtools_cmd make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [ 76%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_convert.cpp [ 77%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_count.cpp [ 79%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_coverage.cpp [ 81%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_filter.cpp [ 83%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_header.cpp [ 84%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_index.cpp [ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_merge.cpp [ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_random.cpp [ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_resolve.cpp [ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_revert.cpp [ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_sort.cpp [ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_split.cpp [ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_stats.cpp [ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/aarch64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools.cpp [100%] Linking CXX executable bamtools cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o bamtools -Wl,-rpath,/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api: ../utils/libbamtools-utils.a -ljsoncpp ../api/libbamtools.so.2.5.1 make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [100%] Built target bamtools_cmd make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg' cd obj-* && ln -s src/toolkit/ bin dh_auto_test --arch make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a cd obj-aarch64-linux-gnu && make -j1 install DESTDIR=/<>/bamtools-2.5.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<>/bamtools-2.5.1+dfsg -B/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/api /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools.dir/build'. make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Built target BamTools make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/utils /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'src/utils/CMakeFiles/BamTools-utils.dir/build'. make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target BamTools-utils make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'src/toolkit/CMakeFiles/bamtools_cmd.dir/build'. make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [100%] Built target bamtools_cmd make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/bamtools-1.pc -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libbamtools.so.2.5.1 -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libbamtools.so -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools -- Set runtime path of "/<>/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools" to "" make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'bamtools' in '../bamtools_2.5.1+dfsg-3_arm64.deb'. dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.5.1+dfsg-3_arm64.deb'. dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.1+dfsg-3_arm64.deb'. dpkg-deb: building package 'libbamtools2.5.1' in '../libbamtools2.5.1_2.5.1+dfsg-3_arm64.deb'. dpkg-deb: building package 'libbamtools2.5.1-dbgsym' in '../libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../bamtools_2.5.1+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-08-17T18:47:42Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-uD9v3W/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-bamtools-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-uD9v3W/apt_archive ./ InRelease Get:2 copy:/<>/resolver-uD9v3W/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-uD9v3W/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-uD9v3W/apt_archive ./ Sources [796 B] Get:5 copy:/<>/resolver-uD9v3W/apt_archive ./ Packages [869 B] Fetched 2628 B in 0s (123 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 7000 kB of archives. After this operation, 19.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-uD9v3W/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-2 [72.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-2 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1+b1 [33.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-2 [646 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1 [320 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.016-1+b1 [17.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.79+repack-2 [34.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.18.0 [1273 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7000 kB in 0s (25.5 MB/s) Selecting previously unselected package readline-common. (Reading database ... 22090 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-2_all.deb ... Unpacking readline-common (8.0-2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-2_amd64.deb ... Unpacking libreadline8:amd64 (8.0-2) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1+b1_amd64.deb ... Unpacking diffstat (1.62-1+b1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.29.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.29.0-2) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.17-3_amd64.deb ... Unpacking gpg (2.2.17-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.36+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../10-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../11-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../12-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../13-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../14-libcgi-pm-perl_4.44-1_all.deb ... Unpacking libcgi-pm-perl (4.44-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../15-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../16-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../17-libclass-method-modifiers-perl_2.12-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.12-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../18-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../19-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../20-libdevel-callchecker-perl_0.008-1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../21-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../22-libdevel-globaldestruction-perl_0.14-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../23-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../24-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../25-libnet-ssleay-perl_1.88-1_amd64.deb ... Unpacking libnet-ssleay-perl (1.88-1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../26-libio-socket-ssl-perl_2.066-1_all.deb ... Unpacking libio-socket-ssl-perl (2.066-1) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../27-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../28-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../29-libmailtools-perl_2.21-1_all.deb ... Unpacking libmailtools-perl (2.21-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../30-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../31-libnet-dns-perl_1.20-1_all.deb ... Unpacking libnet-dns-perl (1.20-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../32-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../33-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../34-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../35-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../36-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../37-libnumber-compare-perl_0.03-1_all.deb ... Unpacking libnumber-compare-perl (0.03-1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../38-libtext-glob-perl_0.10-1_all.deb ... Unpacking libtext-glob-perl (0.10-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../39-libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../40-libfuture-perl_0.41-1_all.deb ... Unpacking libfuture-perl (0.41-1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../41-libparams-classify-perl_0.015-1+b1_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b1) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../42-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../43-libimport-into-perl_1.002005-1_all.deb ... Unpacking libimport-into-perl (1.002005-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../44-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../45-libio-async-perl_0.74-1_all.deb ... Unpacking libio-async-perl (0.74-1) ... Selecting previously unselected package liblinux-epoll-perl. Preparing to unpack .../46-liblinux-epoll-perl_0.016-1+b1_amd64.deb ... Unpacking liblinux-epoll-perl (0.016-1+b1) ... Selecting previously unselected package libio-async-loop-epoll-perl. Preparing to unpack .../47-libio-async-loop-epoll-perl_0.20-1_all.deb ... Unpacking libio-async-loop-epoll-perl (0.20-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../48-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../49-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../50-liblist-compare-perl_0.53-1_all.deb ... Unpacking liblist-compare-perl (0.53-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../51-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../52-librole-tiny-perl_2.000006-1_all.deb ... Unpacking librole-tiny-perl (2.000006-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../53-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../54-libsub-quote-perl_2.006003-1_all.deb ... Unpacking libsub-quote-perl (2.006003-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../55-libmoo-perl_2.003004-2_all.deb ... Unpacking libmoo-perl (2.003004-2) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../56-libpath-tiny-perl_0.108-1_all.deb ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bamtools_2.5.1+dfsg-3_arm64.changes: ------------------------------------ Format: 1.8 Date: Thu, 05 Apr 2018 11:54:57 +0200 Source: bamtools Binary: bamtools bamtools-dbgsym libbamtools-dev libbamtools2.5.1 libbamtools2.5.1-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.5.1+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: bamtools - toolkit for manipulating BAM (genome alignment) files libbamtools-dev - C++ API for manipulating BAM (genome alignment) files libbamtools2.5.1 - dynamic library for manipulating BAM (genome alignment) files Closes: 894886 Changes: bamtools (2.5.1+dfsg-3) unstable; urgency=medium . * Point Vcs fields to salsa.debian.org * Use Breaks+Replaces: libbamtools2.4.0 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grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), help2man (= 1.47.11), hostname (= 3.21), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libapt-pkg5.0 (= 1.8.3), libarchive-zip-perl (= 1.64-1), libarchive13 (= 3.3.3-4), libasan5 (= 9.2.1-1), libatomic1 (= 9.2.1-1), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.32.51.20190813-1), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.6-9.2), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 9.2.1-1), libclang1-6.0 (= 1:6.0.1-11), libcom-err2 (= 1.45.3-4), libcroco3 (= 0.6.13-1), libcurl4 (= 7.65.3-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.7), libedit2 (= 3.1-20190324-1), libelf1 (= 0.176-1.1), libexpat1 (= 2.2.7-1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.5.0-1), libgcc-8-dev (= 8.3.0-19), libgcc-9-dev (= 9.2.1-1), libgcc1 (= 1:9.2.1-1), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4+b1), libgdbm6 (= 1.18.1-4+b1), libglib2.0-0 (= 2.60.6-2), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.9-4), libgomp1 (= 9.2.1-1), libgpg-error0 (= 1.36-7), libgssapi-krb5-2 (= 1.17-6), libhogweed4 (= 3.4.1-1), libicu63 (= 63.2-2), libidn2-0 (= 2.2.0-1), libisl19 (= 0.20-2), libitm1 (= 9.2.1-1), libjsoncpp-dev (= 1.7.4-3), libjsoncpp1 (= 1.7.4-3), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), libldap-2.4-2 (= 2.4.48+dfsg-1), libldap-common (= 2.4.48+dfsg-1), libllvm6.0 (= 1:6.0.1-11), liblocale-gettext-perl (= 1.07-3+b4), liblsan0 (= 9.2.1-1), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-19), libncurses6 (= 6.1+20190803-1), libncursesw6 (= 6.1+20190803-1), libnettle6 (= 3.4.1-1), libnghttp2-14 (= 1.39.2-1), libp11-kit0 (= 0.23.16.1-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libprocps7 (= 2:3.3.15-2), libpsl5 (= 0.20.2-2), libquadmath0 (= 9.2.1-1), librhash0 (= 1.3.8-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2), libsasl2-2 (= 2.1.27+dfsg-1), libsasl2-modules-db (= 2.1.27+dfsg-1), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b2), libsemanage-common (= 2.9-3), libsemanage1 (= 2.9-3), libsepol1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1c-1), libstdc++-9-dev (= 9.2.1-1), libstdc++6 (= 9.2.1-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 241-7), libtasn1-6 (= 4.14-2), libtinfo6 (= 6.1+20190803-1), libtool (= 2.4.6-10), libtsan0 (= 9.2.1-1), libubsan1 (= 9.2.1-1), libuchardet0 (= 0.0.6-3), libudev1 (= 241-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libuv1 (= 1.30.1-1), libxapian30 (= 1.4.11-1), libxml2 (= 2.9.4+dfsg1-7+b3), libzstd1 (= 1.3.8+dfsg-3), linux-libc-dev (= 5.2.7-1), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.6.1-1), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190803-1), ncurses-bin (= 6.1+20190803-1), passwd (= 1:4.7-2), patch (= 2.7.6-6), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), procps (= 2:3.3.15-2), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.95-5), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1+b1), zlib1g-dev (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1522922097" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bamtools-dbgsym_2.5.1+dfsg-3_arm64.deb -------------------------------------- new Debian package, version 2.0. size 3893812 bytes: control archive=540 bytes. 385 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: bamtools-dbgsym Source: bamtools Version: 2.5.1+dfsg-3 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 3950 Depends: bamtools (= 2.5.1+dfsg-3) Section: debug Priority: optional Description: debug symbols for bamtools Build-Ids: 0e252ec3f428278a435d6ee40dc73ac06470f20f drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/debug/.build-id/0e/ -rw-r--r-- root/root 4034224 2018-04-05 09:54 ./usr/lib/debug/.build-id/0e/252ec3f428278a435d6ee40dc73ac06470f20f.debug drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-04-05 09:54 ./usr/share/doc/bamtools-dbgsym -> bamtools bamtools_2.5.1+dfsg-3_arm64.deb ------------------------------- new Debian package, version 2.0. size 155968 bytes: control archive=1512 bytes. 1790 bytes, 37 lines control 622 bytes, 9 lines md5sums Package: bamtools Version: 2.5.1+dfsg-3 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 536 Depends: libbamtools2.5.1, libc6 (>= 2.17), libgcc1 (>= 1:3.0), libjsoncpp1 (>= 1.7.4), libstdc++6 (>= 9) Section: science Priority: optional Homepage: https://github.com/pezmaster31/bamtools/wiki Description: toolkit for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the bamtools command-line toolkit. . Available bamtools commands: convert Converts between BAM and a number of other formats count Prints number of alignments in BAM file(s) coverage Prints coverage statistics from the input BAM file filter Filters BAM file(s) by user-specified criteria header Prints BAM header information index Generates index for BAM file merge Merge multiple BAM files into single file random Select random alignments from existing BAM file(s), intended more as a testing tool. resolve Resolves paired-end reads (marking the IsProperPair flag as needed) revert Removes duplicate marks and restores original base qualities sort Sorts the BAM file according to some criteria split Splits a BAM file on user-specified property, creating a new BAM output file for each value found stats Prints some basic statistics from input BAM file(s) drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/bin/ -rwxr-xr-x root/root 526448 2018-04-05 09:54 ./usr/bin/bamtools drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/bamtools/ -rw-r--r-- root/root 262 2018-04-05 09:54 ./usr/share/doc/bamtools/README.test -rw-r--r-- root/root 1972 2018-04-05 09:54 ./usr/share/doc/bamtools/changelog.Debian.gz -rw-r--r-- root/root 1665 2018-04-05 09:54 ./usr/share/doc/bamtools/copyright -rw-r--r-- root/root 352 2018-04-05 09:54 ./usr/share/doc/bamtools/filter_script -rw-r--r-- root/root 970 2018-04-05 09:54 ./usr/share/doc/bamtools/run-unit-test -rw-r--r-- root/root 375 2018-04-05 09:54 ./usr/share/doc/bamtools/sam_spec_example.bam drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 71 2018-04-05 09:54 ./usr/share/lintian/overrides/bamtools drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/man/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/man/man1/ -rw-r--r-- root/root 792 2018-04-05 09:54 ./usr/share/man/man1/bamtools.1.gz libbamtools-dev_2.5.1+dfsg-3_arm64.deb -------------------------------------- new Debian package, version 2.0. size 21840 bytes: control archive=1504 bytes. 994 bytes, 25 lines control 1729 bytes, 23 lines md5sums Package: libbamtools-dev Source: bamtools Version: 2.5.1+dfsg-3 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 130 Depends: libbamtools2.5.1 (= 2.5.1+dfsg-3) Suggests: libbamtools-doc (= 2.5.1+dfsg-3) Breaks: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/pezmaster31/bamtools/wiki Description: C++ API for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the developers API package. drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/bamtools/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/bamtools/api/ -rw-r--r-- root/root 848 2017-12-23 18:10 ./usr/include/bamtools/api/BamAlgorithms.h -rw-r--r-- root/root 22766 2018-04-05 09:54 ./usr/include/bamtools/api/BamAlignment.h -rw-r--r-- root/root 14259 2017-12-23 18:10 ./usr/include/bamtools/api/BamAux.h -rw-r--r-- root/root 9234 2017-12-23 18:10 ./usr/include/bamtools/api/BamConstants.h -rw-r--r-- root/root 2754 2017-12-23 18:10 ./usr/include/bamtools/api/BamIndex.h -rw-r--r-- root/root 4242 2017-12-23 18:10 ./usr/include/bamtools/api/BamMultiReader.h -rw-r--r-- root/root 3780 2017-12-23 18:10 ./usr/include/bamtools/api/BamReader.h -rw-r--r-- root/root 1950 2017-12-23 18:10 ./usr/include/bamtools/api/BamWriter.h -rw-r--r-- root/root 2818 2017-12-23 18:10 ./usr/include/bamtools/api/IBamIODevice.h -rw-r--r-- root/root 3491 2017-12-23 18:10 ./usr/include/bamtools/api/SamConstants.h -rw-r--r-- root/root 2899 2017-12-23 18:10 ./usr/include/bamtools/api/SamHeader.h -rw-r--r-- root/root 2332 2017-12-23 18:10 ./usr/include/bamtools/api/SamProgram.h -rw-r--r-- root/root 2897 2017-12-23 18:10 ./usr/include/bamtools/api/SamProgramChain.h -rw-r--r-- root/root 3266 2017-12-23 18:10 ./usr/include/bamtools/api/SamReadGroup.h -rw-r--r-- root/root 3083 2017-12-23 18:10 ./usr/include/bamtools/api/SamReadGroupDictionary.h -rw-r--r-- root/root 2570 2017-12-23 18:10 ./usr/include/bamtools/api/SamSequence.h -rw-r--r-- root/root 3043 2017-12-23 18:10 ./usr/include/bamtools/api/SamSequenceDictionary.h drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/bamtools/api/algorithms/ -rw-r--r-- root/root 12242 2017-12-23 18:10 ./usr/include/bamtools/api/algorithms/Sort.h -rw-r--r-- root/root 754 2017-12-23 18:10 ./usr/include/bamtools/api/api_global.h drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/bamtools/shared/ -rw-r--r-- root/root 2346 2017-12-23 18:10 ./usr/include/bamtools/shared/bamtools_global.h drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2018-04-05 09:54 ./usr/lib/aarch64-linux-gnu/libbamtools.so -> libbamtools.so.2.5.1 drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/cmake/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/cmake/bamtools/ -rw-r--r-- root/root 1574 2018-04-05 09:54 ./usr/share/cmake/bamtools/bamtools-config.cmake drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/libbamtools-dev/ -rw-r--r-- root/root 1972 2018-04-05 09:54 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz -rw-r--r-- root/root 1665 2018-04-05 09:54 ./usr/share/doc/libbamtools-dev/copyright libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_arm64.deb ---------------------------------------------- new Debian package, version 2.0. size 3054860 bytes: control archive=560 bytes. 426 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libbamtools2.5.1-dbgsym Source: bamtools Version: 2.5.1+dfsg-3 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 3119 Depends: libbamtools2.5.1 (= 2.5.1+dfsg-3) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libbamtools2.5.1 Build-Ids: 5078add45af85ab013b0403ba554c5bee396ae69 drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/debug/.build-id/50/ -rw-r--r-- root/root 3183184 2018-04-05 09:54 ./usr/lib/debug/.build-id/50/78add45af85ab013b0403ba554c5bee396ae69.debug drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1-dbgsym -> libbamtools2.5.1 libbamtools2.5.1_2.5.1+dfsg-3_arm64.deb --------------------------------------- new Debian package, version 2.0. size 142864 bytes: control archive=1056 bytes. 901 bytes, 22 lines control 241 bytes, 3 lines md5sums 35 bytes, 1 lines shlibs 65 bytes, 2 lines triggers Package: libbamtools2.5.1 Source: bamtools Version: 2.5.1+dfsg-3 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 500 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/pezmaster31/bamtools/wiki Description: dynamic library for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the runtime library. drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 497616 2018-04-05 09:54 ./usr/lib/aarch64-linux-gnu/libbamtools.so.2.5.1 drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1/ -rw-r--r-- root/root 1972 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1/changelog.Debian.gz -rw-r--r-- root/root 1665 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 157952 Build-Time: 129 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 31 Job: bamtools_2.5.1+dfsg-3 Lintian: pass Machine Architecture: amd64 Package: bamtools Package-Time: 172 Source-Version: 2.5.1+dfsg-3 Space: 157952 Status: successful Version: 2.5.1+dfsg-3 -------------------------------------------------------------------------------- Finished at 2019-08-17T18:47:42Z Build needed 00:02:52, 157952k disk space