sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | bamtools 2.5.2+dfsg-5 (mips64el) Sun, 11 Feb 2024 19:04:03 +0000 | +==============================================================================+ Package: bamtools Version: 2.5.2+dfsg-5 Source Version: 2.5.2+dfsg-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-7521b417-bed1-4dce-aa2b-87ce111e397f' with '<>' I: NOTICE: Log filtering will replace 'build/bamtools-3RM0E7/resolver-ULGJpZ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-02-11-1408.12-F-2024-02-11-0210.59.pdiff [17.5 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-02-11-1408.12-F-2024-02-11-0210.59.pdiff [17.2 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-02-11-1408.12-F-2024-02-11-0210.59.pdiff [17.5 kB] Get:6 http://localhost:3142/debian sid/main mips64el Packages [9341 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-02-11-1408.12-F-2024-02-11-0210.59.pdiff [17.2 kB] Fetched 9701 kB in 3s (3429 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bamtools.git Please use: git clone https://salsa.debian.org/med-team/bamtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 169 kB of source archives. Get:1 http://localhost:3142/debian sid/main bamtools 2.5.2+dfsg-5 (dsc) [2513 B] Get:2 http://localhost:3142/debian sid/main bamtools 2.5.2+dfsg-5 (tar) [156 kB] Get:3 http://localhost:3142/debian sid/main bamtools 2.5.2+dfsg-5 (diff) [10.4 kB] Fetched 169 kB in 1s (171 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/bamtools-3RM0E7/bamtools-2.5.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bamtools-3RM0E7' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen, pkg-config, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen, pkg-config, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [799 B] Get:5 copy:/<>/apt_archive ./ Packages [845 B] Fetched 2253 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cmake cmake-data cpp-12-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dpkg-cross dwz file g++-12-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-11-base:mips64el gcc-12-cross-base-mipsen gcc-12-mips64el-linux-gnuabi64 gcc-12-mips64el-linux-gnuabi64-base gcc-13-cross-base-mipsen gcc-14-base:mips64el gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libatomic1:mips64el libatomic1-mips64el-cross libbrotli1 libbsd0 libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libclang-cpp16 libclang1-16 libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libedit2 libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfmt9 libgcc-11-dev:mips64el libgcc-12-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libicu72 libio-string-perl libjsoncpp-dev:mips64el libjsoncpp25 libjsoncpp25:mips64el libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.5-0 libllvm16 liblocale-gettext-perl libmagic-mgc libmagic1 libncursesw6 libnghttp2-14 libnsl-dev:mips64el libnsl2:mips64el libpipeline1 libpkgconf3 libproc2-0 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3:mips64el libstdc++-11-dev:mips64el libstdc++-12-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libuv1 libxapian30 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libz3-4 linux-libc-dev-mips64el-cross m4 man-db pkg-config:mips64el pkgconf:mips64el pkgconf-bin po-debconf procps sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-12-locales cpp-12-doc cpp-doc dh-make doxygen-latex doxygen-doc doxygen-gui graphviz binutils-multiarch g++-12-multilib-mips64el-linux-gnuabi64 gcc-12-doc gcc-12-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:mips64el libc-l10n:mips64el locales:mips64el libnss-nis:mips64el libnss-nisplus:mips64el manpages-dev:mips64el krb5-doc:mips64el krb5-user:mips64el libstdc++-11-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:mips64el ca-certificates libarchive-cpio-perl krb5-locales:mips64el libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cmake cmake-data cpp-12-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dpkg-cross dwz file g++-12-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-11-base:mips64el gcc-12-cross-base-mipsen gcc-12-mips64el-linux-gnuabi64 gcc-12-mips64el-linux-gnuabi64-base gcc-13-cross-base-mipsen gcc-14-base:mips64el gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libatomic1:mips64el libatomic1-mips64el-cross libbrotli1 libbsd0 libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libclang-cpp16 libclang1-16 libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libedit2 libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfmt9 libgcc-11-dev:mips64el libgcc-12-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libicu72 libio-string-perl libjsoncpp-dev:mips64el libjsoncpp25 libjsoncpp25:mips64el libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.5-0 libllvm16 liblocale-gettext-perl libmagic-mgc libmagic1 libncursesw6 libnghttp2-14 libnsl-dev:mips64el libnsl2:mips64el libpipeline1 libpkgconf3 libproc2-0 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3:mips64el libstdc++-11-dev:mips64el libstdc++-12-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libuv1 libxapian30 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libz3-4 linux-libc-dev-mips64el-cross m4 man-db pkg-config:mips64el pkgconf:mips64el pkgconf-bin po-debconf procps sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 147 MB of archives. After this operation, 640 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [968 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6+b1 [15.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:4 http://localhost:3142/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get:5 http://localhost:3142/debian sid/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get:6 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:7 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get:8 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get:9 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get:10 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:11 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:12 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:13 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get:14 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1+b2 [38.1 kB] Get:15 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get:16 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:17 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:18 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:19 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:21 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:22 http://localhost:3142/debian sid/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.41.90.20240115-1cross5 [2777 kB] Get:23 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:24 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:25 http://localhost:3142/debian sid/main amd64 libarchive13 amd64 3.7.2-1 [345 kB] Get:26 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:27 http://localhost:3142/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get:28 http://localhost:3142/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get:29 http://localhost:3142/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get:30 http://localhost:3142/debian sid/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get:31 http://localhost:3142/debian sid/main amd64 libpsl5 amd64 0.21.2-1+b1 [59.1 kB] Get:32 http://localhost:3142/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:33 http://localhost:3142/debian sid/main amd64 libssh2-1 amd64 1.11.0-4 [215 kB] Get:34 http://localhost:3142/debian sid/main amd64 libcurl4 amd64 8.6.0-2 [431 kB] Get:35 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.6.0-1 [101 kB] Get:36 http://localhost:3142/debian sid/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get:37 http://localhost:3142/debian sid/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get:38 http://localhost:3142/debian sid/main amd64 libuv1 amd64 1.46.0-3 [143 kB] Get:39 http://localhost:3142/debian sid/main amd64 cmake-data all 3.28.3-1 [2128 kB] Get:40 http://localhost:3142/debian sid/main amd64 cmake amd64 3.28.3-1 [10.5 MB] Get:41 http://localhost:3142/debian sid/main amd64 gcc-12-mips64el-linux-gnuabi64-base amd64 12.3.0-6cross3 [40.1 kB] Get:42 http://localhost:3142/debian sid/main amd64 cpp-12-mips64el-linux-gnuabi64 amd64 12.3.0-6cross3 [8107 kB] Get:43 http://localhost:3142/debian sid/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [3296 B] Get:44 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:45 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base-mipsen all 12.3.0-6cross3 [35.5 kB] Get:46 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base-mipsen all 13.2.0-10cross1 [37.8 kB] Get:47 http://localhost:3142/debian sid/main amd64 libc6-mips64el-cross all 2.37-13cross1 [1055 kB] Get:48 http://localhost:3142/debian sid/main amd64 libgcc-s1-mips64el-cross all 13.2.0-10cross1 [75.4 kB] Get:49 http://localhost:3142/debian sid/main amd64 libgomp1-mips64el-cross all 13.2.0-10cross1 [111 kB] Get:50 http://localhost:3142/debian sid/main amd64 libatomic1-mips64el-cross all 13.2.0-10cross1 [7120 B] Get:51 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-mips64el-cross all 12.3.0-6cross3 [294 kB] Get:52 http://localhost:3142/debian sid/main amd64 gcc-12-mips64el-linux-gnuabi64 amd64 12.3.0-6cross3 [16.0 MB] Get:53 http://localhost:3142/debian sid/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [1480 B] Get:54 http://localhost:3142/debian sid/main amd64 libstdc++6-mips64el-cross all 13.2.0-10cross1 [568 kB] Get:55 http://localhost:3142/debian sid/main amd64 linux-libc-dev-mips64el-cross all 6.6.11-1cross1 [2049 kB] Get:56 http://localhost:3142/debian sid/main amd64 libc6-dev-mips64el-cross all 2.37-13cross1 [1574 kB] Get:57 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-mips64el-cross all 12.3.0-6cross3 [2082 kB] Get:58 http://localhost:3142/debian sid/main amd64 g++-12-mips64el-linux-gnuabi64 amd64 12.3.0-6cross3 [9041 kB] Get:59 http://localhost:3142/debian sid/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [1188 B] Get:60 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:61 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:62 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:63 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:64 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:65 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b2 [313 kB] Get:66 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:67 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:68 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:69 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:70 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:71 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:72 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:73 http://localhost:3142/debian sid/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:74 http://localhost:3142/debian sid/main amd64 d-shlibs all 0.106 [10.9 kB] Get:75 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.13 [85.0 kB] Get:76 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:77 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:78 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:79 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:80 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:81 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:82 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get:83 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:84 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:85 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:86 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:87 http://localhost:3142/debian sid/main amd64 debhelper all 13.13 [889 kB] Get:88 http://localhost:3142/debian sid/main amd64 libbsd0 amd64 0.11.8-1 [125 kB] Get:89 http://localhost:3142/debian sid/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Get:90 http://localhost:3142/debian sid/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:91 http://localhost:3142/debian sid/main amd64 libllvm16 amd64 1:16.0.6-19 [23.1 MB] Get:92 http://localhost:3142/debian sid/main amd64 libclang-cpp16 amd64 1:16.0.6-19 [11.5 MB] Get:93 http://localhost:3142/debian sid/main amd64 libclang1-16 amd64 1:16.0.6-19 [6586 kB] Get:94 http://localhost:3142/debian sid/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get:95 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.45.1-1 [894 kB] Get:96 http://localhost:3142/debian sid/main amd64 libxapian30 amd64 1.4.22-1+b1 [1138 kB] Get:97 http://localhost:3142/debian sid/main amd64 doxygen amd64 1.9.8+ds-2 [4910 kB] Get:98 http://localhost:3142/debian sid/main mips64el gcc-11-base mips64el 11.4.0-7 [40.3 kB] Get:99 http://localhost:3142/debian sid/main mips64el gcc-14-base mips64el 14-20240201-3 [42.4 kB] Get:100 http://localhost:3142/debian sid/main amd64 help2man amd64 1.49.3 [198 kB] Get:101 http://localhost:3142/debian sid/main mips64el libgcc-s1 mips64el 14-20240201-3 [77.5 kB] Get:102 http://localhost:3142/debian sid/main mips64el libc6 mips64el 2.37-15 [2370 kB] Get:103 http://localhost:3142/debian sid/main mips64el libatomic1 mips64el 14-20240201-3 [7328 B] Get:104 http://localhost:3142/debian sid/main mips64el libcrypt1 mips64el 1:4.4.36-4 [94.1 kB] Get:105 http://localhost:3142/debian sid/main mips64el libcrypt-dev mips64el 1:4.4.36-4 [127 kB] Get:106 http://localhost:3142/debian sid/main mips64el libkrb5support0 mips64el 1.20.1-5+b1 [31.1 kB] Get:107 http://localhost:3142/debian sid/main mips64el libcom-err2 mips64el 1.47.0-2+b1 [19.9 kB] Get:108 http://localhost:3142/debian sid/main mips64el libk5crypto3 mips64el 1.20.1-5+b1 [85.6 kB] Get:109 http://localhost:3142/debian sid/main mips64el libkeyutils1 mips64el 1.6.3-3 [8500 B] Get:110 http://localhost:3142/debian sid/main mips64el libssl3 mips64el 3.1.5-1 [1495 kB] Get:111 http://localhost:3142/debian sid/main mips64el libkrb5-3 mips64el 1.20.1-5+b1 [296 kB] Get:112 http://localhost:3142/debian sid/main mips64el libgssapi-krb5-2 mips64el 1.20.1-5+b1 [118 kB] Get:113 http://localhost:3142/debian sid/main mips64el libtirpc3 mips64el 1.3.4+ds-1 [71.8 kB] Get:114 http://localhost:3142/debian sid/main mips64el libnsl2 mips64el 1.3.0-3 [35.5 kB] Get:115 http://localhost:3142/debian sid/main mips64el libtirpc-dev mips64el 1.3.4+ds-1 [197 kB] Get:116 http://localhost:3142/debian sid/main mips64el libnsl-dev mips64el 1.3.0-3 [69.9 kB] Get:117 http://localhost:3142/debian sid/main mips64el libc6-dev mips64el 2.37-15 [1578 kB] Get:118 http://localhost:3142/debian sid/main mips64el libgomp1 mips64el 14-20240201-3 [113 kB] Get:119 http://localhost:3142/debian sid/main mips64el libgcc-11-dev mips64el 11.4.0-7 [281 kB] Get:120 http://localhost:3142/debian sid/main mips64el libstdc++6 mips64el 14-20240201-3 [630 kB] Get:121 http://localhost:3142/debian sid/main mips64el libjsoncpp25 mips64el 1.9.5-6+b2 [71.1 kB] Get:122 http://localhost:3142/debian sid/main mips64el libjsoncpp-dev mips64el 1.9.5-6+b2 [24.8 kB] Get:123 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get:124 http://localhost:3142/debian sid/main mips64el libstdc++-11-dev mips64el 11.4.0-7 [2020 kB] Get:125 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get:126 http://localhost:3142/debian sid/main mips64el pkgconf mips64el 1.8.1-1+b2 [26.2 kB] Get:127 http://localhost:3142/debian sid/main mips64el pkg-config mips64el 1.8.1-1+b2 [14.0 kB] Get:128 http://localhost:3142/debian sid/main mips64el zlib1g mips64el 1:1.3.dfsg-3+b1 [79.0 kB] Get:129 http://localhost:3142/debian sid/main mips64el zlib1g-dev mips64el 1:1.3.dfsg-3+b1 [912 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 147 MB in 1s (195 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 16278 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-6+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.4+20240113-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20240113-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-2+b1_amd64.deb ... 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Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libatomic1-mips64el-cross (13.2.0-10cross1) ... Setting up libtool (2.4.7-7) ... Setting up libarchive13:amd64 (3.7.2-1) ... Setting up libedit2:amd64 (3.1-20230828-1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Setting up pkgconf:mips64el (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libc6-dev-mips64el-cross (2.37-13cross1) ... Setting up pkg-config:mips64el (1.8.1-1+b2) ... Setting up ucf (3.0043+nmu1) ... Setting up libstdc++6-mips64el-cross (13.2.0-10cross1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libcurl4:amd64 (8.6.0-2) ... Setting up libllvm16:amd64 (1:16.0.6-19) ... Setting up libgcc-12-dev-mips64el-cross (12.3.0-6cross3) ... Setting up gcc-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Setting up libstdc++-12-dev-mips64el-cross (12.3.0-6cross3) ... Setting up libclang1-16 (1:16.0.6-19) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up g++-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libclang-cpp16 (1:16.0.6-19) ... Setting up cmake (3.28.3-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up debhelper (13.13) ... Setting up doxygen (1.9.8+ds-2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libgcc-s1:mips64el (14-20240201-3) ... Setting up libc6:mips64el (2.37-15) ... Setting up libstdc++6:mips64el (14-20240201-3) ... Setting up libkeyutils1:mips64el (1.6.3-3) ... Setting up libssl3:mips64el (3.1.5-1) ... Setting up zlib1g:mips64el (1:1.3.dfsg-3+b1) ... Setting up libcrypt1:mips64el (1:4.4.36-4) ... Setting up libcom-err2:mips64el (1.47.0-2+b1) ... Setting up libgomp1:mips64el (14-20240201-3) ... Setting up libkrb5support0:mips64el (1.20.1-5+b1) ... Setting up libatomic1:mips64el (14-20240201-3) ... Setting up libjsoncpp25:mips64el (1.9.5-6+b2) ... Setting up libk5crypto3:mips64el (1.20.1-5+b1) ... Setting up libgcc-11-dev:mips64el (11.4.0-7) ... Setting up libcrypt-dev:mips64el (1:4.4.36-4) ... Setting up libkrb5-3:mips64el (1.20.1-5+b1) ... Setting up libjsoncpp-dev:mips64el (1.9.5-6+b2) ... Setting up libgssapi-krb5-2:mips64el (1.20.1-5+b1) ... Setting up libtirpc3:mips64el (1.3.4+ds-1) ... Setting up libtirpc-dev:mips64el (1.3.4+ds-1) ... Setting up libnsl2:mips64el (1.3.0-3) ... Setting up libnsl-dev:mips64el (1.3.0-3) ... Setting up libc6-dev:mips64el (2.37-15) ... Setting up libstdc++-11-dev:mips64el (11.4.0-7) ... Setting up zlib1g-dev:mips64el (1:1.3.dfsg-3+b1) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.37-15) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.42-2 dpkg-dev_1.22.4 g++-11_11.4.0-7 g++-13_13.2.0-13 gcc-11_11.4.0-7 gcc-13_13.2.0-13 libc6-dev_2.37-15 libstdc++-11-dev_11.4.0-7 libstdc++-12-dev-mips64el-cross_12.3.0-6cross3 libstdc++-13-dev_13.2.0-13 libstdc++6_14-20240201-3 libstdc++6-mips64el-cross_13.2.0-10cross1 linux-libc-dev_6.6.15-2 Package versions: adduser_3.137 apt_2.7.10 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-2 binutils-common_2.42-2 binutils-mips64el-linux-gnuabi64_2.41.90.20240115-1cross5 binutils-x86-64-linux-gnu_2.42-2 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 cmake_3.28.3-1 cmake-data_3.28.3-1 coreutils_9.4-3+b1 cpp_4:13.2.0-7 cpp-11_11.4.0-7 cpp-12-mips64el-linux-gnuabi64_12.3.0-6cross3 cpp-13_13.2.0-13 cpp-13-x86-64-linux-gnu_13.2.0-13 cpp-mips64el-linux-gnuabi64_4:12.2.0-4 cpp-x86-64-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-mips64el_12.9 d-shlibs_0.106 dash_0.5.12-6 debconf_1.5.85 debhelper_13.13 debian-archive-keyring_2023.4 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 doxygen_1.9.8+ds-2 dpkg_1.22.4 dpkg-cross_2.6.20 dpkg-dev_1.22.4 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.33-1 file_1:5.45-2+b1 findutils_4.9.0-5 g++_4:13.2.0-7 g++-11_11.4.0-7 g++-12-mips64el-linux-gnuabi64_12.3.0-6cross3 g++-13_13.2.0-13 g++-13-x86-64-linux-gnu_13.2.0-13 g++-mips64el-linux-gnuabi64_4:12.2.0-4 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-14 gcc-12-cross-base-mipsen_12.3.0-6cross3 gcc-12-mips64el-linux-gnuabi64_12.3.0-6cross3 gcc-12-mips64el-linux-gnuabi64-base_12.3.0-6cross3 gcc-13_13.2.0-13 gcc-13-base_13.2.0-13 gcc-13-cross-base-mipsen_13.2.0-10cross1 gcc-13-x86-64-linux-gnu_13.2.0-13 gcc-14-base_14-20240201-3 gcc-9-base_9.5.0-5 gcc-mips64el-linux-gnuabi64_4:12.2.0-4 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gpgv_2.2.40-1.1+b1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 help2man_1.49.3 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libapt-pkg6.0_2.7.10 libarchive-zip-perl_1.68-1 libarchive13_3.7.2-1 libasan6_11.4.0-7 libasan8_14-20240201-3 libatomic1_14-20240201-3 libatomic1-mips64el-cross_13.2.0-10cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2 libaudit1_1:3.1.2-2 libbinutils_2.42-2 libblkid1_2.39.3-6 libbrotli1_1.1.0-2+b3 libbsd0_0.11.8-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-15 libc-dev-bin_2.37-15 libc6_2.37-15 libc6-dev_2.37-15 libc6-dev-mips64el-cross_2.37-13cross1 libc6-mips64el-cross_2.37-13cross1 libcap-ng0_0.8.4-2 libcap2_1:2.66-5 libcc1-0_14-20240201-3 libclang-cpp16_1:16.0.6-19 libclang1-16_1:16.0.6-19 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-2 libctf0_2.42-2 libcurl4_8.6.0-2 libdb5.3_5.3.28+dfsg2-4+b1 libdebconfclient0_0.271 libdebhelper-perl_13.13 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.4 libedit2_3.1-20230828-1 libelf1_0.190-1+b1 libexpat1_2.6.0-1 libext2fs2_1.47.0-2+b1 libfakeroot_1.33-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfmt9_9.1.0+ds1-2 libgcc-11-dev_11.4.0-7 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perl-modules-5.38_5.38.2-3 pkg-config_1.8.1-1+b2 pkgconf_1.8.1-1+b2 pkgconf-bin_1.8.1-1+b2 po-debconf_1.0.21+nmu1 procps_2:4.0.4-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.08-6 tar_1.35+dfsg-3 tzdata_2024a-1 ucf_3.0043+nmu1 usrmerge_39 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3+b1 zlib1g-dev_1:1.3.dfsg-3+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: bamtools Binary: bamtools, libbamtools-dev, libbamtools2.5.2, libbamtools-doc Architecture: any all Version: 2.5.2+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille , Kevin Murray , Étienne Mollier Homepage: https://github.com/pezmaster31/bamtools/wiki Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/bamtools Vcs-Git: https://salsa.debian.org/med-team/bamtools.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen, pkg-config Package-List: bamtools deb science optional arch=any libbamtools-dev deb libdevel optional arch=any libbamtools-doc deb doc optional arch=all libbamtools2.5.2 deb libs optional arch=any Checksums-Sha1: 22affe59a445f08e603c3f9d5378b32d06fbccd7 155732 bamtools_2.5.2+dfsg.orig.tar.xz 9ed811f07b3d00b0243e92519ee085739d65386a 10412 bamtools_2.5.2+dfsg-5.debian.tar.xz Checksums-Sha256: bba4d268cb9457cd836b59c60eac6a9f25e10cd9aea646f03e5deffb82c1c5c1 155732 bamtools_2.5.2+dfsg.orig.tar.xz 6a126c8007d9889ec20495231c4f119485e4f8ada6c70570bd59888365e625a8 10412 bamtools_2.5.2+dfsg-5.debian.tar.xz Files: a29fafa8a0f930c3029749245032e886 155732 bamtools_2.5.2+dfsg.orig.tar.xz 6599f77962b28a80f43063d18a6306c2 10412 bamtools_2.5.2+dfsg-5.debian.tar.xz Dgit: d6bbd015dfe9f74968f9233ca0f95bbb45764f85 debian archive/debian/2.5.2+dfsg-5 https://git.dgit.debian.org/bamtools -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmV8l2QUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoTRA//UDX7rfaL4eIfzGNDhQVs1/6eIbAy ihOQ4Jsz8PJvyUnx87HTXyuXNVPtT+i1QxtxBzIqam58I7zpuco/rU1Nt1Hcfzl3 lV7kj3pSKg4LPe7gyf8DjvN+Jrdo38c1DzBIuSMvmw0xhnLI724AzPkpBUeq0bHz YxrJYdBt7ZxkO50RjnzxwGf/GQK6/2o8iIhjwsWd7hTEOhyoMVq+DHa8WzPevPoA nBJ57m4H4w9SeBMbeIr25m/PI1c/xJwzMr2kX/g6l+SITDunGADfkW36EQ/V+W9p FeplqBKV83FRzd0x9k0wD/uYeV0oX0C9ltLbr2vcyHtVfjIv0znEm0gS3+GxVujG AQ0GA4bzIsD16hikreOSlA7tjeMcrZNv/TgO6qt6WhLh3D7sU05gl4fr9ctwEsIb MTMZg4JvSPhFr9hvYVrPmRz1JaqgkKipLAPzDzcd22yWxRDus5S15CB02FTdLxg6 u2GCfzvda8PN+TsHRFmcUAmOB9ukr8xDKCOuf/sgAvIc3O5biAy9S9Q6FRnfKESj AOERMCAc2Sucf4cqjqX5i0eIxyjygOgZKOzkKnntZuVgT5zgW3BwBiYQU76i180c 5ncWoU9MyUC84IRoB0mGP4I7Yh29uOoZRlCZLkRuHcp7JWHCUKWyJNRLXFX8EyzS Lsi9KQuXyKS8gzg= =GXPw -----END PGP SIGNATURE----- gpgv: Signature made Fri Dec 15 18:13:56 2023 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./bamtools_2.5.2+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting bamtools in /<> dpkg-source: info: unpacking bamtools_2.5.2+dfsg.orig.tar.xz dpkg-source: info: unpacking bamtools_2.5.2+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch dpkg-source: info: applying shared_and_static.patch dpkg-source: info: applying typo.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.KJC44c5MIC/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-7521b417-bed1-4dce-aa2b-87ce111e397f SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package bamtools dpkg-buildpackage: info: source version 2.5.2+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el debian/rules clean dh clean debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/<>' test ! -f docs/Doxyfile.orig || mv docs/Doxyfile.orig docs/Doxyfile make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-mips64el-linux-gnuabi64 && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=mips64 -DCMAKE_C_COMPILER=mips64el-linux-gnuabi64-gcc -DCMAKE_CXX_COMPILER=mips64el-linux-gnuabi64-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/mips64el-linux-gnuabi64-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/mips64el-linux-gnuabi64-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/mips64el-linux-gnuabi64-qmake -DCMAKE_INSTALL_LIBDIR=lib/mips64el-linux-gnuabi64 -DBUILD_TESTING:BOOL=OFF .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 12.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/mips64el-linux-gnuabi64-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/mips64el-linux-gnuabi64-pkg-config (found version "1.8.1") -- Checking for one of the modules 'jsoncpp>=1' Found system JsonCpp, not using bundled version -- Found ZLIB: /usr/lib/mips64el-linux-gnuabi64/libz.so (found version "1.3") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done (0.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_COMPILER CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-mips64el-linux-gnuabi64 dh_auto_build -a cd obj-mips64el-linux-gnuabi64 && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' /usr/bin/cmake -S/<> -B/<>/obj-mips64el-linux-gnuabi64 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-mips64el-linux-gnuabi64/CMakeFiles /<>/obj-mips64el-linux-gnuabi64//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' make -f src/CMakeFiles/BamTools.dir/build.make src/CMakeFiles/BamTools.dir/depend make[3]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/src /<>/obj-mips64el-linux-gnuabi64/src/CMakeFiles/BamTools.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f src/CMakeFiles/BamTools.dir/build.make src/CMakeFiles/BamTools.dir/build make[3]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 1%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o -MF CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o -c /<>/src/api/BamAlignment.cpp [ 2%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o -MF CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o -c /<>/src/api/BamMultiReader.cpp In file included from /<>/src/api/internal/bam/BamMultiMerger_p.h:32, from /<>/src/api/internal/bam/BamMultiReader_p.h:29, from /<>/src/api/BamMultiReader.cpp:16: /<>/src/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_tree.h:65, from /usr/mips64el-linux-gnuabi64/include/c++/12/map:60, from /<>/src/api/BamMultiReader.h:13, from /<>/src/api/BamMultiReader.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamReader.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamReader.cpp.o -MF CMakeFiles/BamTools.dir/api/BamReader.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamReader.cpp.o -c /<>/src/api/BamReader.cpp [ 4%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamWriter.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamWriter.cpp.o -MF CMakeFiles/BamTools.dir/api/BamWriter.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamWriter.cpp.o -c /<>/src/api/BamWriter.cpp [ 5%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamHeader.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -MF CMakeFiles/BamTools.dir/api/SamHeader.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -c /<>/src/api/SamHeader.cpp [ 6%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamProgram.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -MF CMakeFiles/BamTools.dir/api/SamProgram.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -c /<>/src/api/SamProgram.cpp [ 7%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o -MF CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o -c /<>/src/api/SamProgramChain.cpp [ 8%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o -MF CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o -c /<>/src/api/SamReadGroup.cpp [ 9%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o -c /<>/src/api/SamReadGroupDictionary.cpp [ 10%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamSequence.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamSequence.cpp.o -MF CMakeFiles/BamTools.dir/api/SamSequence.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamSequence.cpp.o -c /<>/src/api/SamSequence.cpp [ 11%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o -c /<>/src/api/SamSequenceDictionary.cpp [ 12%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o -c /<>/src/api/internal/bam/BamHeader_p.cpp [ 13%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o -c /<>/src/api/internal/bam/BamMultiReader_p.cpp In file included from /<>/src/api/internal/bam/BamMultiMerger_p.h:32, from /<>/src/api/internal/bam/BamMultiReader_p.h:29, from /<>/src/api/internal/bam/BamMultiReader_p.cpp:10: /<>/src/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/string:48, from /usr/mips64el-linux-gnuabi64/include/c++/12/stdexcept:39, from /<>/src/shared/bamtools_global.h:72, from /<>/src/api/api_global.h:14, from /<>/src/api/internal/bam/BamMultiReader_p.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -c /<>/src/api/internal/bam/BamRandomAccessController_p.cpp [ 15%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o -c /<>/src/api/internal/bam/BamReader_p.cpp [ 16%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o -c /<>/src/api/internal/bam/BamWriter_p.cpp [ 17%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o -c /<>/src/api/internal/index/BamIndexFactory_p.cpp [ 18%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o -c /<>/src/api/internal/index/BamStandardIndex_p.cpp [ 19%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o -c /<>/src/api/internal/index/BamToolsIndex_p.cpp [ 20%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o -c /<>/src/api/internal/io/BamDeviceFactory_p.cpp [ 21%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o -c /<>/src/api/internal/io/BamFile_p.cpp [ 22%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o -c /<>/src/api/internal/io/BamFtp_p.cpp [ 23%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o -c /<>/src/api/internal/io/BamHttp_p.cpp [ 24%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o -c /<>/src/api/internal/io/BamPipe_p.cpp [ 25%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o -c /<>/src/api/internal/io/BgzfStream_p.cpp [ 26%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o -c /<>/src/api/internal/io/ByteArray_p.cpp [ 27%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o -c /<>/src/api/internal/io/HostAddress_p.cpp [ 28%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o -c /<>/src/api/internal/io/HostInfo_p.cpp [ 29%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o -c /<>/src/api/internal/io/HttpHeader_p.cpp [ 30%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o -c /<>/src/api/internal/io/ILocalIODevice_p.cpp [ 31%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o -c /<>/src/api/internal/io/RollingBuffer_p.cpp [ 32%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o -c /<>/src/api/internal/io/TcpSocketEngine_p.cpp [ 33%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o -c /<>/src/api/internal/io/TcpSocket_p.cpp [ 34%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o -c /<>/src/api/internal/sam/SamFormatParser_p.cpp [ 35%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -c /<>/src/api/internal/sam/SamFormatPrinter_p.cpp [ 36%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -c /<>/src/api/internal/sam/SamHeaderValidator_p.cpp [ 37%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o -c /<>/src/api/internal/utils/BamException_p.cpp [ 38%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<>/src/api/internal/io/TcpSocketEngine_unix_p.cpp [ 39%] Linking CXX shared library libbamtools.so cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbamtools.so.2.5.2 -o libbamtools.so.2.5.2 CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/api/BamReader.cpp.o CMakeFiles/BamTools.dir/api/BamWriter.cpp.o CMakeFiles/BamTools.dir/api/SamHeader.cpp.o CMakeFiles/BamTools.dir/api/SamProgram.cpp.o CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/api/SamSequence.cpp.o CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -lz cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.2 libbamtools.so.2.5.2 libbamtools.so make[3]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 39%] Built target BamTools make -f src/CMakeFiles/BamTools_static.dir/build.make src/CMakeFiles/BamTools_static.dir/depend make[3]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/src /<>/obj-mips64el-linux-gnuabi64/src/CMakeFiles/BamTools_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f src/CMakeFiles/BamTools_static.dir/build.make src/CMakeFiles/BamTools_static.dir/build make[3]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 40%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o -c /<>/src/api/BamAlignment.cpp [ 41%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -c /<>/src/api/BamMultiReader.cpp In file included from /<>/src/api/internal/bam/BamMultiMerger_p.h:32, from /<>/src/api/internal/bam/BamMultiReader_p.h:29, from /<>/src/api/BamMultiReader.cpp:16: /<>/src/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_tree.h:65, from /usr/mips64el-linux-gnuabi64/include/c++/12/map:60, from /<>/src/api/BamMultiReader.h:13, from /<>/src/api/BamMultiReader.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -c /<>/src/api/BamReader.cpp [ 43%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o -c /<>/src/api/BamWriter.cpp [ 44%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o -c /<>/src/api/SamHeader.cpp [ 45%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o -c /<>/src/api/SamProgram.cpp [ 46%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -c /<>/src/api/SamProgramChain.cpp [ 47%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o -c /<>/src/api/SamReadGroup.cpp [ 48%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -c /<>/src/api/SamReadGroupDictionary.cpp [ 50%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o -c /<>/src/api/SamSequence.cpp [ 51%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o -c /<>/src/api/SamSequenceDictionary.cpp [ 52%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o -c /<>/src/api/internal/bam/BamHeader_p.cpp [ 53%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o -c /<>/src/api/internal/bam/BamMultiReader_p.cpp In file included from /<>/src/api/internal/bam/BamMultiMerger_p.h:32, from /<>/src/api/internal/bam/BamMultiReader_p.h:29, from /<>/src/api/internal/bam/BamMultiReader_p.cpp:10: /<>/src/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/string:48, from /usr/mips64el-linux-gnuabi64/include/c++/12/stdexcept:39, from /<>/src/shared/bamtools_global.h:72, from /<>/src/api/api_global.h:14, from /<>/src/api/internal/bam/BamMultiReader_p.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -c /<>/src/api/internal/bam/BamRandomAccessController_p.cpp [ 55%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o -c /<>/src/api/internal/bam/BamReader_p.cpp [ 56%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o -c /<>/src/api/internal/bam/BamWriter_p.cpp [ 57%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o -c /<>/src/api/internal/index/BamIndexFactory_p.cpp [ 58%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o -c /<>/src/api/internal/index/BamStandardIndex_p.cpp [ 59%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o -c /<>/src/api/internal/index/BamToolsIndex_p.cpp [ 60%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o -c /<>/src/api/internal/io/BamDeviceFactory_p.cpp [ 61%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o -c /<>/src/api/internal/io/BamFile_p.cpp [ 62%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o -c /<>/src/api/internal/io/BamFtp_p.cpp [ 63%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o -c /<>/src/api/internal/io/BamHttp_p.cpp [ 64%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o -c /<>/src/api/internal/io/BamPipe_p.cpp [ 65%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o -c /<>/src/api/internal/io/BgzfStream_p.cpp [ 66%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o -c /<>/src/api/internal/io/ByteArray_p.cpp [ 67%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o -c /<>/src/api/internal/io/HostAddress_p.cpp [ 68%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o -c /<>/src/api/internal/io/HostInfo_p.cpp [ 69%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o -c /<>/src/api/internal/io/HttpHeader_p.cpp [ 70%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o -c /<>/src/api/internal/io/ILocalIODevice_p.cpp [ 71%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o -c /<>/src/api/internal/io/RollingBuffer_p.cpp [ 72%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o -c /<>/src/api/internal/io/TcpSocketEngine_p.cpp [ 73%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o -MF 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src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -c /<>/src/api/internal/sam/SamFormatPrinter_p.cpp [ 76%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -c /<>/src/api/internal/sam/SamHeaderValidator_p.cpp [ 77%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT 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/<>/src/api/internal/io/TcpSocketEngine_unix_p.cpp [ 79%] Linking CXX static library libbamtools.a cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/cmake -P CMakeFiles/BamTools_static.dir/cmake_clean_target.cmake cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools_static.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-ar qc libbamtools.a CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o 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CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o 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CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o -c /<>/src/utils/bamtools_options.cpp [ 82%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o -c /<>/src/utils/bamtools_pileup_engine.cpp [ 83%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && 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"CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o" "CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o" "CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o" /usr/bin/mips64el-linux-gnuabi64-ranlib libBamTools-utils.a make[3]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 84%] Built target BamTools-utils make -f src/CMakeFiles/bamtools_cmd.dir/build.make src/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/src /<>/obj-mips64el-linux-gnuabi64/src/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f src/CMakeFiles/bamtools_cmd.dir/build.make src/CMakeFiles/bamtools_cmd.dir/build make[3]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 85%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o -c /<>/src/toolkit/bamtools.cpp [ 86%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o -c /<>/src/toolkit/bamtools_convert.cpp [ 87%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o -c /<>/src/toolkit/bamtools_count.cpp In file included from /<>/src/api/BamAlgorithms.h:15, from /<>/src/toolkit/bamtools_count.cpp:12: /<>/src/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/string:48, from /<>/src/toolkit/bamtools_tool.h:14, from /<>/src/toolkit/bamtools_count.h:13, from /<>/src/toolkit/bamtools_count.cpp:10: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o -c /<>/src/toolkit/bamtools_coverage.cpp [ 89%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o -c /<>/src/toolkit/bamtools_filter.cpp [ 90%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o -c /<>/src/toolkit/bamtools_header.cpp [ 91%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o -c /<>/src/toolkit/bamtools_index.cpp [ 92%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o -c /<>/src/toolkit/bamtools_merge.cpp [ 93%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o -c /<>/src/toolkit/bamtools_random.cpp [ 94%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o -c /<>/src/toolkit/bamtools_resolve.cpp [ 95%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o -c /<>/src/toolkit/bamtools_revert.cpp [ 96%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o -c /<>/src/toolkit/bamtools_sort.cpp In file included from /<>/src/toolkit/bamtools_sort.cpp:15: /<>/src/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/string:48, from /<>/src/toolkit/bamtools_tool.h:14, from /<>/src/toolkit/bamtools_sort.h:13, from /<>/src/toolkit/bamtools_sort.cpp:10: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o -c /<>/src/toolkit/bamtools_split.cpp [ 98%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-mips64el-linux-gnuabi64/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o -c /<>/src/toolkit/bamtools_stats.cpp [100%] Linking CXX executable bamtools cd /<>/obj-mips64el-linux-gnuabi64/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o -o bamtools -Wl,-rpath,/<>/obj-mips64el-linux-gnuabi64/src: libBamTools-utils.a -L/usr/lib/mips64el-linux-gnuabi64 -ljsoncpp libbamtools.so.2.5.2 make[3]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [100%] Built target bamtools_cmd make[2]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' /usr/bin/cmake -E cmake_progress_start /<>/obj-mips64el-linux-gnuabi64/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-mips64el-linux-gnuabi64 && make -j1 install DESTDIR=/<>/bamtools-2.5.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' /usr/bin/cmake -S/<> -B/<>/obj-mips64el-linux-gnuabi64 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libbamtools.so.2.5.2 -- Installing: /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libbamtools.so -- Installing: /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libbamtools.a -- Installing: /<>/debian/tmp/usr/bin/bamtools -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/bamtools" to "" -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamAlignment.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamAux.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamConstants.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamIndex.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamMultiReader.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamReader.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamWriter.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/IBamIODevice.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamConstants.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamHeader.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamProgram.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamProgramChain.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamReadGroup.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamSequence.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/api_global.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/bamtools_api_export.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h -- Installing: /<>/debian/tmp/usr/include/bamtools/shared/bamtools_global.h -- Installing: /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/bamtools-1.pc make[1]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install --arch d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/mips64el-linux-gnuabi64/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbamtools-dev/usr/lib/mips64el-linux-gnuabi64 install -d -m 755 debian/libbamtools2.5.2/usr/lib/mips64el-linux-gnuabi64 mv debian/tmp/usr/lib/mips64el-linux-gnuabi64/libbamtools.a debian/libbamtools-dev/usr/lib/mips64el-linux-gnuabi64 mv debian/tmp/usr/lib/mips64el-linux-gnuabi64/libbamtools.so debian/libbamtools-dev/usr/lib/mips64el-linux-gnuabi64 mv /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libbamtools.so.2.5.2 debian/libbamtools2.5.2/usr/lib/mips64el-linux-gnuabi64 PKGDEV=libbamtools-dev PKGSHL=libbamtools2.5.2 install -d -m 755 debian/libbamtools-dev/usr/include mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include install -d -m 755 debian/libbamtools-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libbamtools-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'bamtools' in '../bamtools_2.5.2+dfsg-5_mips64el.deb'. dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.5.2+dfsg-5_mips64el.deb'. dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.2+dfsg-5_mips64el.deb'. dpkg-deb: building package 'libbamtools2.5.2' in '../libbamtools2.5.2_2.5.2+dfsg-5_mips64el.deb'. dpkg-deb: building package 'libbamtools2.5.2-dbgsym' in '../libbamtools2.5.2-dbgsym_2.5.2+dfsg-5_mips64el.deb'. dpkg-genbuildinfo --build=any -O../bamtools_2.5.2+dfsg-5_mips64el.buildinfo dpkg-genchanges --build=any -O../bamtools_2.5.2+dfsg-5_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-02-11T19:06:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bamtools_2.5.2+dfsg-5_mips64el.changes: --------------------------------------- Format: 1.8 Date: Fri, 15 Dec 2023 19:09:45 +0100 Source: bamtools Binary: bamtools bamtools-dbgsym libbamtools-dev libbamtools2.5.2 libbamtools2.5.2-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 2.5.2+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: bamtools - toolkit for manipulating BAM (genome alignment) files libbamtools-dev - C++ API for manipulating BAM (genome alignment) files libbamtools2.5.2 - dynamic library for manipulating BAM (genome alignment) files Closes: 1043881 Changes: bamtools (2.5.2+dfsg-5) unstable; urgency=medium . * d/control: add myself to uploaders. * d/rules: preserve pristine Doxyfile. (Closes: #1043881) * typo.patch: new: fix typo caught by lintian. 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(= 14-20240201-3), libclang-cpp16 (= 1:16.0.6-19), libclang1-16 (= 1:16.0.6-19), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-2), libctf0 (= 2.42-2), libcurl4 (= 8.6.0-2), libdb5.3 (= 5.3.28+dfsg2-4+b1), libdebconfclient0 (= 0.271), libdebhelper-perl (= 13.13), libdpkg-perl (= 1.22.4), libedit2 (= 3.1-20230828-1), libelf1 (= 0.190-1+b1), libexpat1 (= 2.6.0-1), libffi8 (= 3.4.4-2), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libfmt9 (= 9.1.0+ds1-2), libgcc-11-dev (= 11.4.0-7), libgcc-13-dev (= 13.2.0-13), libgcc-s1 (= 14-20240201-3), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5+b1), libgdbm6 (= 1.23-5+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30 (= 3.8.3-1), libgomp1 (= 14-20240201-3), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-2), libgssapi-krb5-2 (= 1.20.1-5+b1), libhogweed6 (= 3.9.1-2), libhwasan0 (= 14-20240201-3), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 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libproc2-0 (= 2:4.0.4-4), libpsl5 (= 0.21.2-1+b1), libquadmath0 (= 14-20240201-3), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg1-4+b1), libsasl2-modules-db (= 2.1.28+dfsg1-4+b1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1+b2), libsepol2 (= 3.5-2), libsframe1 (= 2.42-2), libsmartcols1 (= 2.39.3-6), libsqlite3-0 (= 3.45.1-1), libssh2-1 (= 1.11.0-4), libssl3 (= 3.1.5-1), libstdc++-13-dev (= 13.2.0-13), libstdc++6 (= 14-20240201-3), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.3-2), libtasn1-6 (= 4.19.0-3+b2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20240113-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan0 (= 11.4.0-7), libtsan2 (= 14-20240201-3), libubsan1 (= 14-20240201-3), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.3-2), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-6), libuv1 (= 1.46.0-3), libxapian30 (= 1.4.22-1+b1), libxml2 (= 2.9.14+dfsg-1.3+b2), libxxhash0 (= 0.8.2-2+b1), libz3-4 (= 4.8.12-3.1+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.15-2), login (= 1:4.13+dfsg1-3+b1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-3), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), passwd (= 1:4.13+dfsg1-3+b1), patch (= 2.7.6-7), perl (= 5.38.2-3), perl-base (= 5.38.2-3), perl-modules-5.38 (= 5.38.2-3), pkg-config (= 1.8.1-1+b2), pkgconf (= 1.8.1-1+b2), pkgconf-bin (= 1.8.1-1+b2), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-6), tar (= 1.35+dfsg-3), usrmerge (= 39), util-linux (= 2.39.3-6), xz-utils (= 5.4.5-0.3), zlib1g (= 1:1.3.dfsg-3+b1), zlib1g-dev (= 1:1.3.dfsg-3+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1702663785" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bamtools-dbgsym_2.5.2+dfsg-5_mips64el.deb ----------------------------------------- new Debian package, version 2.0. size 3427604 bytes: control archive=540 bytes. 388 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: bamtools-dbgsym Source: bamtools Version: 2.5.2+dfsg-5 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 3481 Depends: bamtools (= 2.5.2+dfsg-5) Section: debug Priority: optional Description: debug symbols for bamtools Build-Ids: cbfc8ca464e09e46dfeeddaaef12f87b687b2a1e drwxr-xr-x root/root 0 2023-12-15 18:09 ./ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/debug/.build-id/cb/ -rw-r--r-- root/root 3553432 2023-12-15 18:09 ./usr/lib/debug/.build-id/cb/fc8ca464e09e46dfeeddaaef12f87b687b2a1e.debug drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-12-15 18:09 ./usr/share/doc/bamtools-dbgsym -> bamtools bamtools_2.5.2+dfsg-5_mips64el.deb ---------------------------------- new Debian package, version 2.0. size 157232 bytes: control archive=1484 bytes. 1811 bytes, 37 lines control 551 bytes, 8 lines md5sums Package: bamtools Version: 2.5.2+dfsg-5 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 754 Depends: libbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libjsoncpp25 (>= 1.9.5), libstdc++6 (>= 11) Section: science Priority: optional Homepage: https://github.com/pezmaster31/bamtools/wiki Description: toolkit for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the bamtools command-line toolkit. . Available bamtools commands: convert Converts between BAM and a number of other formats count Prints number of alignments in BAM file(s) coverage Prints coverage statistics from the input BAM file filter Filters BAM file(s) by user-specified criteria header Prints BAM header information index Generates index for BAM file merge Merge multiple BAM files into single file random Select random alignments from existing BAM file(s), intended more as a testing tool. resolve Resolves paired-end reads (marking the IsProperPair flag as needed) revert Removes duplicate marks and restores original base qualities sort Sorts the BAM file according to some criteria split Splits a BAM file on user-specified property, creating a new BAM output file for each value found stats Prints some basic statistics from input BAM file(s) drwxr-xr-x root/root 0 2023-12-15 18:09 ./ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/bin/ -rwxr-xr-x root/root 751800 2023-12-15 18:09 ./usr/bin/bamtools drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/doc/bamtools/ -rw-r--r-- root/root 262 2023-12-15 18:09 ./usr/share/doc/bamtools/README.test -rw-r--r-- root/root 1465 2023-12-15 18:09 ./usr/share/doc/bamtools/changelog.Debian.gz -rw-r--r-- root/root 1665 2023-12-15 18:09 ./usr/share/doc/bamtools/copyright -rw-r--r-- root/root 352 2023-12-15 18:09 ./usr/share/doc/bamtools/filter_script -rw-r--r-- root/root 1607 2023-12-15 18:09 ./usr/share/doc/bamtools/run-unit-test -rw-r--r-- root/root 375 2023-12-15 18:09 ./usr/share/doc/bamtools/sam_spec_example.bam drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/man/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/man/man1/ -rw-r--r-- root/root 792 2023-12-15 18:09 ./usr/share/man/man1/bamtools.1.gz libbamtools-dev_2.5.2+dfsg-5_mips64el.deb ----------------------------------------- new Debian package, version 2.0. size 236584 bytes: control archive=1624 bytes. 972 bytes, 25 lines control 1980 bytes, 26 lines md5sums Package: libbamtools-dev Source: bamtools Version: 2.5.2+dfsg-5 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1773 Depends: libbamtools2.5.2 (= 2.5.2+dfsg-5), zlib1g-dev Suggests: libbamtools-doc (= 2.5.2+dfsg-5) Breaks: libbamtools2.5.1 Replaces: libbamtools2.5.1 Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/pezmaster31/bamtools/wiki Description: C++ API for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the developers API package. drwxr-xr-x root/root 0 2023-12-15 18:09 ./ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/include/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/include/bamtools/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/include/bamtools/api/ -rw-r--r-- root/root 848 2021-06-20 19:43 ./usr/include/bamtools/api/BamAlgorithms.h -rw-r--r-- root/root 22982 2021-06-20 19:43 ./usr/include/bamtools/api/BamAlignment.h -rw-r--r-- root/root 10700 2021-06-20 19:43 ./usr/include/bamtools/api/BamAux.h -rw-r--r-- root/root 9282 2021-06-20 19:43 ./usr/include/bamtools/api/BamConstants.h -rw-r--r-- root/root 2754 2021-06-20 19:43 ./usr/include/bamtools/api/BamIndex.h -rw-r--r-- root/root 4242 2021-06-20 19:43 ./usr/include/bamtools/api/BamMultiReader.h -rw-r--r-- root/root 3780 2021-06-20 19:43 ./usr/include/bamtools/api/BamReader.h -rw-r--r-- root/root 1950 2021-06-20 19:43 ./usr/include/bamtools/api/BamWriter.h -rw-r--r-- root/root 2818 2021-06-20 19:43 ./usr/include/bamtools/api/IBamIODevice.h -rw-r--r-- root/root 3491 2021-06-20 19:43 ./usr/include/bamtools/api/SamConstants.h -rw-r--r-- root/root 2842 2021-06-20 19:43 ./usr/include/bamtools/api/SamHeader.h -rw-r--r-- root/root 2261 2021-06-20 19:43 ./usr/include/bamtools/api/SamProgram.h -rw-r--r-- root/root 2822 2021-06-20 19:43 ./usr/include/bamtools/api/SamProgramChain.h -rw-r--r-- root/root 3189 2021-06-20 19:43 ./usr/include/bamtools/api/SamReadGroup.h -rw-r--r-- root/root 2987 2021-06-20 19:43 ./usr/include/bamtools/api/SamReadGroupDictionary.h -rw-r--r-- root/root 2540 2021-06-20 19:43 ./usr/include/bamtools/api/SamSequence.h -rw-r--r-- root/root 2950 2021-06-20 19:43 ./usr/include/bamtools/api/SamSequenceDictionary.h drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/include/bamtools/api/algorithms/ -rw-r--r-- root/root 12403 2021-06-20 19:43 ./usr/include/bamtools/api/algorithms/Sort.h -rw-r--r-- root/root 663 2021-06-20 19:43 ./usr/include/bamtools/api/api_global.h -rw-r--r-- root/root 967 2023-12-15 18:09 ./usr/include/bamtools/api/bamtools_api_export.h drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/include/bamtools/shared/ -rw-r--r-- root/root 2136 2021-06-20 19:43 ./usr/include/bamtools/shared/bamtools_global.h drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 1682284 2023-12-15 18:09 ./usr/lib/mips64el-linux-gnuabi64/libbamtools.a lrwxrwxrwx root/root 0 2023-12-15 18:09 ./usr/lib/mips64el-linux-gnuabi64/libbamtools.so -> libbamtools.so.2.5.2 drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/mips64el-linux-gnuabi64/pkgconfig/ -rw-r--r-- root/root 267 2023-12-15 18:09 ./usr/lib/mips64el-linux-gnuabi64/pkgconfig/bamtools-1.pc drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/cmake/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/cmake/bamtools/ -rw-r--r-- root/root 1574 2023-12-15 18:09 ./usr/share/cmake/bamtools/bamtools-config.cmake drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/doc/libbamtools-dev/ -rw-r--r-- root/root 1468 2023-12-15 18:09 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz -rw-r--r-- root/root 1665 2023-12-15 18:09 ./usr/share/doc/libbamtools-dev/copyright libbamtools2.5.2-dbgsym_2.5.2+dfsg-5_mips64el.deb ------------------------------------------------- new Debian package, version 2.0. size 2733736 bytes: control archive=560 bytes. 429 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libbamtools2.5.2-dbgsym Source: bamtools Version: 2.5.2+dfsg-5 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 2816 Depends: libbamtools2.5.2 (= 2.5.2+dfsg-5) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libbamtools2.5.2 Build-Ids: a8e8219e41c01c3156204ca5ba331fe14b3dbb92 drwxr-xr-x root/root 0 2023-12-15 18:09 ./ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/debug/.build-id/a8/ -rw-r--r-- root/root 2872904 2023-12-15 18:09 ./usr/lib/debug/.build-id/a8/e8219e41c01c3156204ca5ba331fe14b3dbb92.debug drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-12-15 18:09 ./usr/share/doc/libbamtools2.5.2-dbgsym -> libbamtools2.5.2 libbamtools2.5.2_2.5.2+dfsg-5_mips64el.deb ------------------------------------------ new Debian package, version 2.0. size 135752 bytes: control archive=1068 bytes. 905 bytes, 22 lines control 247 bytes, 3 lines md5sums 51 bytes, 1 lines shlibs 66 bytes, 2 lines triggers Package: libbamtools2.5.2 Source: bamtools Version: 2.5.2+dfsg-5 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 566 Depends: libc6 (>= 2.15), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/pezmaster31/bamtools/wiki Description: dynamic library for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the runtime library. drwxr-xr-x root/root 0 2023-12-15 18:09 ./ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/lib/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 564648 2023-12-15 18:09 ./usr/lib/mips64el-linux-gnuabi64/libbamtools.so.2.5.2 drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-15 18:09 ./usr/share/doc/libbamtools2.5.2/ -rw-r--r-- root/root 1469 2023-12-15 18:09 ./usr/share/doc/libbamtools2.5.2/changelog.Debian.gz -rw-r--r-- root/root 1665 2023-12-15 18:09 ./usr/share/doc/libbamtools2.5.2/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1381 B] Get:5 copy:/<>/apt_archive ./ Packages [1466 B] Fetched 3462 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 12.6 MB of archives. After this operation, 49.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:4 http://localhost:3142/debian sid/main amd64 openssl amd64 3.1.5-1 [1241 kB] Get:5 http://localhost:3142/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:6 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.65-1 [33.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.6-1 [49.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:9 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1.1+b1 [565 kB] Get:10 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1.1+b1 [950 kB] Get:11 http://localhost:3142/debian sid/main amd64 iso-codes all 4.16.0-1 [2936 kB] Get:12 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:13 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b3 [66.9 kB] Get:14 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b2 [10.7 kB] Get:15 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:16 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2+b1 [15.1 kB] Get:17 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b2 [22.4 kB] Get:18 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:19 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:22 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b2 [43.9 kB] Get:23 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:24 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b2 [121 kB] Get:25 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:26 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:27 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.26-1 [98.2 kB] Get:28 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.81-1+b1 [99.0 kB] Get:29 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.61-1 [217 kB] Get:30 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:31 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:32 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b2 [36.3 kB] Get:33 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1+b1 [13.8 kB] Get:34 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:35 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b2 [24.4 kB] Get:36 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:37 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:38 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:39 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:40 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.37-1+b1 [128 kB] Get:41 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:42 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:43 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 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http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b2 [24.3 kB] Get:55 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b2 [29.3 kB] Get:56 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:57 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:58 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:59 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:60 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:61 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:62 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:63 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:64 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:65 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:66 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:72 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1 [338 kB] Get:73 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:74 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:75 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.13-1 [10.7 kB] Get:76 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:77 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.76-1 [183 kB] Get:78 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:79 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:80 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:81 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:82 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:83 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.14-1 [38.5 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2+b1 [54.8 kB] Get:88 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:89 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:90 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:91 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:93 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:94 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:95 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b4 [143 kB] Get:96 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b1 [11.2 kB] Get:98 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b1 [12.5 kB] Get:99 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:100 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:101 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b2 [17.5 kB] Get:102 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b1 [11.4 kB] Get:103 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b1 [42.2 kB] Get:104 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:105 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b1 [99.2 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b1 [102 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:108 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1+b1 [57.5 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-1+b1 [27.1 kB] Get:110 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b2 [24.7 kB] Get:111 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b2 [8704 B] Get:112 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b1 [13.0 kB] Get:113 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b3 [174 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b2 [72.7 kB] Get:116 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b1 [20.3 kB] Get:117 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:118 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:119 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1 [34.7 kB] Get:120 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-1 [63.9 kB] Get:121 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:122 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:123 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:124 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:125 http://localhost:3142/debian sid/main amd64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.6 MB in 0s (77.7 MB/s) Selecting previously unselected package netbase. (Reading database ... 26214 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.1.5-1_amd64.deb ... Unpacking openssl (3.1.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.65-1_amd64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.6-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1) ... Selecting previously unselected package libreadline8:amd64. 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Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b1) ... Setting up libmouse-perl (2.5.10-1+b4) ... Setting up libdata-messagepack-perl (1.02-1+b2) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3+b1) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1+b1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b2) ... Setting up unzip (6.0-28) ... 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Setting up libnet-ssleay-perl:amd64 (1.94-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1+b1) ... Setting up gpgconf (2.2.40-1.1+b1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-1.1+b1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b2) ... Setting up libcgi-pm-perl (4.61-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.76-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.13-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 160192 Build-Time: 119 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 15 Job: bamtools_2.5.2+dfsg-5 Lintian: pass Machine Architecture: amd64 Package: bamtools Package-Time: 146 Source-Version: 2.5.2+dfsg-5 Space: 160192 Status: successful Version: 2.5.2+dfsg-5 -------------------------------------------------------------------------------- Finished at 2024-02-11T19:06:29Z Build needed 00:02:26, 160192k disk space