sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | bamtools 2.5.2+dfsg-6 (amd64) Sun, 10 Nov 2024 13:34:31 +0000 | +==============================================================================+ Package: bamtools Version: 2.5.2+dfsg-6 Source Version: 2.5.2+dfsg-6 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.KcLFp3TE28... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/bamtools-wW5JFt/resolver-rKyaUR' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [202 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.9 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9945 kB] Get:4 http://mirror.einval.org/debian unstable/main amd64 Packages [10.0 MB] Fetched 31.1 MB in 8s (4023 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bamtools.git Please use: git clone https://salsa.debian.org/med-team/bamtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 169 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main bamtools 2.5.2+dfsg-6 (dsc) [2387 B] Get:2 http://mirror.einval.org/debian unstable/main bamtools 2.5.2+dfsg-6 (tar) [156 kB] Get:3 http://mirror.einval.org/debian unstable/main bamtools 2.5.2+dfsg-6 (diff) [11.4 kB] Fetched 169 kB in 0s (2416 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/bamtools-wW5JFt/bamtools-2.5.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bamtools-wW5JFt' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen, pkgconf, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen, pkgconf, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [787 B] Get:5 copy:/<>/apt_archive ./ Packages [830 B] Fetched 2226 B in 0s (124 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz fakeroot file g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-14-base:amd64 gcc-14-cross-base gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbrotli1 libbsd0 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libclang-cpp19 libclang1-19 libcom-err2 libcrypt-dev:amd64 libcrypt1:amd64 libcurl4t64 libdebhelper-perl libedit2 libelf1t64 libexpat1 libfakeroot libfile-stripnondeterminism-perl libfmt10 libgcc-14-dev:amd64 libgcc-14-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2 libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libitm1:amd64 libitm1-amd64-cross libjsoncpp-dev:amd64 libjsoncpp26 libjsoncpp26:amd64 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 libllvm19 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libncursesw6 libnghttp2-14 libpipeline1 libpkgconf3 libproc2-0 libpsl5t64 libquadmath0:amd64 libquadmath0-amd64-cross librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libstdc++-14-dev:amd64 libstdc++-14-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libuv1t64 libxapian30 libxml2 libz3-4 linux-libc-dev-amd64-cross m4 man-db pkgconf:amd64 pkgconf-bin po-debconf procps sensible-utils zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-14-locales cpp-14-doc cpp-doc dh-make doxygen-latex doxygen-doc doxygen-gui graphviz gcc-14-doc manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc krb5-user libstdc++-14-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 ca-certificates libarchive-cpio-perl krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz fakeroot file g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-14-base:amd64 gcc-14-cross-base gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbrotli1 libbsd0 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libclang-cpp19 libclang1-19 libcom-err2 libcrypt-dev:amd64 libcrypt1:amd64 libcurl4t64 libdebhelper-perl libedit2 libelf1t64 libexpat1 libfakeroot libfile-stripnondeterminism-perl libfmt10 libgcc-14-dev:amd64 libgcc-14-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2 libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libitm1:amd64 libitm1-amd64-cross libjsoncpp-dev:amd64 libjsoncpp26 libjsoncpp26:amd64 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 libllvm19 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libncursesw6 libnghttp2-14 libpipeline1 libpkgconf3 libproc2-0 libpsl5t64 libquadmath0:amd64 libquadmath0-amd64-cross librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libstdc++-14-dev:amd64 libstdc++-14-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libuv1t64 libxapian30 libxml2 libz3-4 linux-libc-dev-amd64-cross m4 man-db pkgconf:amd64 pkgconf-bin po-debconf procps sbuild-build-depends-main-dummy:amd64 sensible-utils zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 121 newly installed, 0 to remove and 0 not upgraded. Need to get 178 MB of archives. After this operation, 781 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.5-2+b1 [125 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-10 [96.5 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 cmake-data all 3.30.5-1 [2223 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b5 [296 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get:30 http://mirror.einval.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-2 [73.1 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 cmake arm64 3.30.5-1 [9403 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 gcc-14-x86-64-linux-gnu-base arm64 14.2.0-6cross1 [46.9 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 cpp-14-x86-64-linux-gnu arm64 14.2.0-6cross1 [10.4 MB] Get:47 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:14.2.0-1 [4852 B] Get:48 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.43.1-5 [2440 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14.2.0-6cross1 [42.2 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 14.2.0-6cross1 [72.7 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 14.2.0-6cross1 [129 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 14.2.0-6cross1 [25.3 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 14.2.0-6cross1 [8984 B] Get:54 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 14.2.0-6cross1 [2718 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 14.2.0-6cross1 [1204 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 14.2.0-6cross1 [2449 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.40-3cross1 [1532 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 14.2.0-6cross1 [665 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 14.2.0-6cross1 [1074 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 14.2.0-6cross1 [1485 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 14.2.0-6cross1 [145 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libgcc-14-dev-amd64-cross all 14.2.0-6cross1 [2669 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 gcc-14-x86-64-linux-gnu arm64 14.2.0-6cross1 [20.0 MB] Get:64 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:14.2.0-1 [1448 B] Get:65 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-amd64-cross all 6.11.2-1cross1 [2266 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.40-3cross1 [1949 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libstdc++-14-dev-amd64-cross all 14.2.0-6cross1 [2347 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 g++-14-x86-64-linux-gnu arm64 14.2.0-6cross1 [11.3 MB] Get:69 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:14.2.0-1 [1204 B] Get:70 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.12 [3552 B] Get:71 http://mirror.einval.org/debian unstable/main arm64 d-shlibs all 0.107 [11.0 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:78 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libbsd0 arm64 0.12.2-2 [129 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libedit2 arm64 3.1-20240808-1 [89.2 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libllvm19 arm64 1:19.1.3-1 [23.3 MB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libclang-cpp19 arm64 1:19.1.3-1 [12.0 MB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libclang1-19 arm64 1:19.1.3-1 [6860 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libfmt10 arm64 10.1.1+ds1-4 [121 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.46.1-1 [852 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libxapian30 arm64 1.4.25-1+b1 [1057 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 doxygen arm64 1.9.8+ds-2+b3 [4515 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.36-1 [29.1 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.36-1 [74.4 kB] Get:96 http://mirror.einval.org/debian unstable/main amd64 gcc-14-base amd64 14.2.0-8 [47.2 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get:98 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 14.2.0-8 [72.7 kB] Get:99 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.40-3 [2807 kB] Get:100 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 14.2.0-8 [2729 kB] Get:101 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 14.2.0-8 [9280 B] Get:102 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.36-5 [89.8 kB] Get:103 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.36-5 [118 kB] Get:104 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.40-3 [1956 kB] Get:105 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 14.2.0-8 [137 kB] Get:106 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 14.2.0-8 [25.9 kB] Get:107 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 14.2.0-8 [1205 kB] Get:108 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 14.2.0-8 [2461 kB] Get:109 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 14.2.0-8 [714 kB] Get:110 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 14.2.0-8 [1075 kB] Get:111 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 14.2.0-8 [1489 kB] Get:112 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 14.2.0-8 [145 kB] Get:113 http://mirror.einval.org/debian unstable/main amd64 libgcc-14-dev amd64 14.2.0-8 [2674 kB] Get:114 http://mirror.einval.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-2 [81.6 kB] Get:115 http://mirror.einval.org/debian unstable/main amd64 libjsoncpp-dev amd64 1.9.6-2 [24.9 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get:117 http://mirror.einval.org/debian unstable/main amd64 libstdc++-14-dev amd64 14.2.0-8 [2369 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get:119 http://mirror.einval.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get:120 http://mirror.einval.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Get:121 http://mirror.einval.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 178 MB in 2s (87.7 MB/s) Selecting previously unselected package liblocale-gettext-perl. 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Setting up libhwasan0-amd64-cross (14.2.0-6cross1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libubsan1-amd64-cross (14.2.0-6cross1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libgcc-14-dev-amd64-cross (14.2.0-6cross1) ... Setting up groff-base (1.23.0-5) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-6cross1) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libstdc++-14-dev-amd64-cross (14.2.0-6cross1) ... Setting up libllvm19:arm64 (1:19.1.3-1) ... Setting up libclang1-19 (1:19.1.3-1) ... Setting up gcc-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up g++-14-x86-64-linux-gnu (14.2.0-6cross1) ... Setting up g++-x86-64-linux-gnu (4:14.2.0-1) ... Setting up cmake (3.30.5-1) ... Setting up libclang-cpp19 (1:19.1.3-1) ... Setting up debhelper (13.20) ... Setting up doxygen (1.9.8+ds-2+b3) ... Setting up crossbuild-essential-amd64 (12.12) ... Setting up libgcc-s1:amd64 (14.2.0-8) ... Setting up libc6:amd64 (2.40-3) ... Setting up libhwasan0:amd64 (14.2.0-8) ... Setting up libasan8:amd64 (14.2.0-8) ... Setting up libtsan2:amd64 (14.2.0-8) ... Setting up libstdc++6:amd64 (14.2.0-8) ... Setting up liblsan0:amd64 (14.2.0-8) ... Setting up libitm1:amd64 (14.2.0-8) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:amd64 (1:4.4.36-5) ... Setting up libgomp1:amd64 (14.2.0-8) ... Setting up libjsoncpp26:amd64 (1.9.6-2) ... Setting up libquadmath0:amd64 (14.2.0-8) ... Setting up libatomic1:amd64 (14.2.0-8) ... Setting up libubsan1:amd64 (14.2.0-8) ... Setting up libcrypt-dev:amd64 (1:4.4.36-5) ... Setting up libc6-dev:amd64 (2.40-3) ... Setting up libgcc-14-dev:amd64 (14.2.0-8) ... Setting up libstdc++-14-dev:amd64 (14.2.0-8) ... Setting up libjsoncpp-dev:amd64 (1.9.6-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for base-files (13.5) ... Processing triggers for libc-bin (2.40-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-25-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) arm64 (aarch64) Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-8 libstdc++-14-dev-amd64-cross_14.2.0-6cross1 libstdc++6_14.2.0-8 libstdc++6-amd64-cross_14.2.0-6cross1 linux-libc-dev_6.11.6-1 Package versions: apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 binutils-x86-64-linux-gnu_2.43.1-5 bsdextrautils_2.40.2-10 bsdutils_1:2.40.2-10 build-essential_12.12 bzip2_1.0.8-6 cmake_3.30.5-1 cmake-data_3.30.5-1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-8 cpp-14-aarch64-linux-gnu_14.2.0-8 cpp-14-x86-64-linux-gnu_14.2.0-6cross1 cpp-aarch64-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-amd64_12.12 d-shlibs_0.107 dash_0.5.12-9+b1 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20+b1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1+b1 doxygen_1.9.8+ds-2+b3 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-8 g++-14-aarch64-linux-gnu_14.2.0-8 g++-14-x86-64-linux-gnu_14.2.0-6cross1 g++-aarch64-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-8 gcc-14-aarch64-linux-gnu_14.2.0-8 gcc-14-base_14.2.0-8 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libsmartcols1_2.40.2-10 libsqlite3-0_3.46.1-1 libssh2-1t64_1.11.1-1 libssl3t64_3.3.2-2 libstdc++-14-dev_14.2.0-8 libstdc++-14-dev-amd64-cross_14.2.0-6cross1 libstdc++6_14.2.0-8 libstdc++6-amd64-cross_14.2.0-6cross1 libsystemd0_257~rc1-4 libtasn1-6_4.19.0-3+b3 libtinfo6_6.5-2+b1 libtool_2.4.7-8 libtsan2_14.2.0-8 libtsan2-amd64-cross_14.2.0-6cross1 libubsan1_14.2.0-8 libubsan1-amd64-cross_14.2.0-6cross1 libuchardet0_0.0.8-1+b2 libudev1_257~rc1-4 libunistring5_1.2-1+b1 libuuid1_2.40.2-10 libuv1t64_1.48.0-7 libxapian30_1.4.25-1+b1 libxml2_2.12.7+dfsg+really2.9.14-0.1 libxxhash0_0.8.2-2+b2 libz3-4_4.13.3-1 libzstd1_1.5.6+dfsg-1+b1 linux-libc-dev_6.11.6-1 linux-libc-dev-amd64-cross_6.11.2-1cross1 login_1:4.16.0-2+really2.40.2-10 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1+b1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2+b1 openssl-provider-legacy_3.3.2-2 patch_2.7.6-7+b1 perl_5.40.0-7 perl-base_5.40.0-7 perl-modules-5.40_5.40.0-7 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 procps_2:4.0.4-6 rpcsvc-proto_1.4.3-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2+b1 sensible-utils_0.0.24 sysvinit-utils_3.11-1 tar_1.35+dfsg-3+b1 util-linux_2.40.2-10 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: bamtools Binary: bamtools, libbamtools-dev, libbamtools2.5.2, libbamtools-doc Architecture: any all Version: 2.5.2+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille , Kevin Murray , Étienne Mollier Homepage: https://github.com/pezmaster31/bamtools/wiki Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/bamtools Vcs-Git: https://salsa.debian.org/med-team/bamtools.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen, pkgconf Package-List: bamtools deb science optional arch=any libbamtools-dev deb libdevel optional arch=any libbamtools-doc deb doc optional arch=all libbamtools2.5.2 deb libs optional arch=any Checksums-Sha1: 22affe59a445f08e603c3f9d5378b32d06fbccd7 155732 bamtools_2.5.2+dfsg.orig.tar.xz 7cc3351c7180b79fd41ffb7c49da5260689c9987 11368 bamtools_2.5.2+dfsg-6.debian.tar.xz Checksums-Sha256: bba4d268cb9457cd836b59c60eac6a9f25e10cd9aea646f03e5deffb82c1c5c1 155732 bamtools_2.5.2+dfsg.orig.tar.xz e4c667cb47d93420c0473c6f674d8a138a1e64362aeca55b81341aeb7e353785 11368 bamtools_2.5.2+dfsg-6.debian.tar.xz Files: a29fafa8a0f930c3029749245032e886 155732 bamtools_2.5.2+dfsg.orig.tar.xz c495be9488890186b00051d0a63c21a9 11368 bamtools_2.5.2+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmaRGHQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFLqQ/+OcycIB7F7GyBa40zu1kb1I7EPmqDwpmm 5zxpxM++K8E3kxQbL8LYFmq97whd69kzjnVkAz35FVZ/3oqSUAThRdqe5+Y+NzZC P1szfBrsE7bFUgykd3sWur0yZauja6zQ9Otm/IA+6qcrBY+SXIpxWkFc+RCkRcUj O0tC1ZVRtALgFW8GJneBQyp9LGzoZsJDgZhMAJfl/Tc3tuNhSFTC0vF3IxG3bjJt zgsfGL4rXcmr7LJZFn7lygEIDooVThSPPkHgPvw582m/9Ck4fG7K/G7gDdd7C8Rh X0Ko3UKLHgaebXE+qQXn9aNlwYEO901UdVY3zvtHMoFaZjI9w8s9lor4+azlNPM3 Kjz/ZhntRJOzZ3vsorDTzOiAh4YhY0CYQ7/rsnH27QQrbc4IXsV2ug2l2tWuAC27 HeCxd8m8qfa/lNvS8xRVTTXR+o2e0h+duBtdRLFL/9AGkZjlGp2M5Oss1zCuit+0 +Sv/kqYEKH02yu4mhkeGheXc5Q7YdjsheghWipL3f2yc9uMDDo5j0O62tMrsuVeo yoWuP9mpJ6xOEGrzmvgCbbfO8eU2Y4jR+iv8xXMJ+R2C69Y1rcEU1688qzpHrKLH QGKzLr8ihwnumx5Vukoetn0WTI0RYVczlOzvYi46IdnIMHd1/VyPWRx54gATr4+8 WldzQv42FhU= =fapy -----END PGP SIGNATURE----- gpgv: Signature made Fri Jul 12 11:50:12 2024 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./bamtools_2.5.2+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting bamtools in /<> dpkg-source: info: unpacking bamtools_2.5.2+dfsg.orig.tar.xz dpkg-source: info: unpacking bamtools_2.5.2+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch dpkg-source: info: applying shared_and_static.patch dpkg-source: info: applying typo.patch dpkg-source: info: applying filter_script.patch dpkg-source: info: applying do_not_corrupt_output.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package bamtools dpkg-buildpackage: info: source version 2.5.2+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/<>' test ! -f docs/Doxyfile.orig || mv docs/Doxyfile.orig docs/Doxyfile make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/x86_64-linux-gnu-pkg-config (found version "1.8.1") -- Checking for one of the modules 'jsoncpp>=1' Found system JsonCpp, not using bundled version -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done (2.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_COMPILER CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-x86_64-linux-gnu dh_auto_build -a cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/BamTools.dir/build.make src/CMakeFiles/BamTools.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/BamTools.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/BamTools.dir/build.make src/CMakeFiles/BamTools.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o -MF CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o -c /<>/src/api/BamAlignment.cpp [ 2%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o -MF CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o -c /<>/src/api/BamMultiReader.cpp In file included from /<>/src/api/internal/bam/BamMultiMerger_p.h:32, from /<>/src/api/internal/bam/BamMultiReader_p.h:29, from /<>/src/api/BamMultiReader.cpp:16: /<>/src/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/14/bits/stl_tree.h:65, from /usr/x86_64-linux-gnu/include/c++/14/map:62, from /<>/src/api/BamMultiReader.h:13, from /<>/src/api/BamMultiReader.cpp:15: /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamReader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamReader.cpp.o -MF CMakeFiles/BamTools.dir/api/BamReader.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamReader.cpp.o -c /<>/src/api/BamReader.cpp [ 4%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamWriter.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamWriter.cpp.o -MF CMakeFiles/BamTools.dir/api/BamWriter.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamWriter.cpp.o -c /<>/src/api/BamWriter.cpp [ 5%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamHeader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -MF CMakeFiles/BamTools.dir/api/SamHeader.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -c /<>/src/api/SamHeader.cpp [ 6%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamProgram.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -MF CMakeFiles/BamTools.dir/api/SamProgram.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -c /<>/src/api/SamProgram.cpp [ 7%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o -MF CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o -c /<>/src/api/SamProgramChain.cpp [ 8%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o -MF CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o -c /<>/src/api/SamReadGroup.cpp [ 9%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o -c /<>/src/api/SamReadGroupDictionary.cpp [ 10%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamSequence.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamSequence.cpp.o -MF CMakeFiles/BamTools.dir/api/SamSequence.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamSequence.cpp.o -c /<>/src/api/SamSequence.cpp [ 11%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o -c /<>/src/api/SamSequenceDictionary.cpp [ 12%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o -c /<>/src/api/internal/bam/BamHeader_p.cpp [ 13%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o -c /<>/src/api/internal/bam/BamMultiReader_p.cpp In file included from /<>/src/api/internal/bam/BamMultiMerger_p.h:32, from /<>/src/api/internal/bam/BamMultiReader_p.h:29, from /<>/src/api/internal/bam/BamMultiReader_p.cpp:10: /<>/src/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/14/string:49, from /usr/x86_64-linux-gnu/include/c++/14/stdexcept:39, from /<>/src/shared/bamtools_global.h:72, from /<>/src/api/api_global.h:14, from /<>/src/api/internal/bam/BamMultiReader_p.h:13: /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -c /<>/src/api/internal/bam/BamRandomAccessController_p.cpp [ 15%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o -c /<>/src/api/internal/bam/BamReader_p.cpp [ 16%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o -c /<>/src/api/internal/bam/BamWriter_p.cpp [ 17%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o -c /<>/src/api/internal/index/BamIndexFactory_p.cpp [ 18%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o -c /<>/src/api/internal/index/BamStandardIndex_p.cpp [ 19%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o -c /<>/src/api/internal/index/BamToolsIndex_p.cpp [ 20%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o -c /<>/src/api/internal/io/BamDeviceFactory_p.cpp [ 21%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o -c /<>/src/api/internal/io/BamFile_p.cpp [ 22%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o -c /<>/src/api/internal/io/BamFtp_p.cpp [ 23%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o -c /<>/src/api/internal/io/BamHttp_p.cpp [ 24%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o -c /<>/src/api/internal/io/BamPipe_p.cpp [ 25%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o -c /<>/src/api/internal/io/BgzfStream_p.cpp [ 26%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o -c /<>/src/api/internal/io/ByteArray_p.cpp [ 27%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o -c /<>/src/api/internal/io/HostAddress_p.cpp [ 28%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o -c /<>/src/api/internal/io/HostInfo_p.cpp [ 29%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o -c /<>/src/api/internal/io/HttpHeader_p.cpp [ 30%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o -c /<>/src/api/internal/io/ILocalIODevice_p.cpp [ 31%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o -c /<>/src/api/internal/io/RollingBuffer_p.cpp [ 32%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o -c /<>/src/api/internal/io/TcpSocketEngine_p.cpp [ 33%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o -c /<>/src/api/internal/io/TcpSocket_p.cpp [ 34%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o -c /<>/src/api/internal/sam/SamFormatParser_p.cpp [ 35%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -c /<>/src/api/internal/sam/SamFormatPrinter_p.cpp [ 36%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -c /<>/src/api/internal/sam/SamHeaderValidator_p.cpp [ 37%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o -c /<>/src/api/internal/utils/BamException_p.cpp [ 38%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<>/src/api/internal/io/TcpSocketEngine_unix_p.cpp [ 39%] Linking CXX shared library libbamtools.so cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbamtools.so.2.5.2 -o libbamtools.so.2.5.2 CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/api/BamReader.cpp.o CMakeFiles/BamTools.dir/api/BamWriter.cpp.o CMakeFiles/BamTools.dir/api/SamHeader.cpp.o CMakeFiles/BamTools.dir/api/SamProgram.cpp.o CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/api/SamSequence.cpp.o CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -lz cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.2 libbamtools.so.2.5.2 libbamtools.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Built target BamTools make -f src/CMakeFiles/BamTools_static.dir/build.make src/CMakeFiles/BamTools_static.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/BamTools_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/BamTools_static.dir/build.make src/CMakeFiles/BamTools_static.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o -c /<>/src/api/BamAlignment.cpp [ 41%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -c /<>/src/api/BamMultiReader.cpp In file included from /<>/src/api/internal/bam/BamMultiMerger_p.h:32, from /<>/src/api/internal/bam/BamMultiReader_p.h:29, from /<>/src/api/BamMultiReader.cpp:16: /<>/src/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/14/bits/stl_tree.h:65, from /usr/x86_64-linux-gnu/include/c++/14/map:62, from /<>/src/api/BamMultiReader.h:13, from /<>/src/api/BamMultiReader.cpp:15: /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -c /<>/src/api/BamReader.cpp [ 43%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o -c /<>/src/api/BamWriter.cpp [ 44%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o -c /<>/src/api/SamHeader.cpp [ 45%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o -c /<>/src/api/SamProgram.cpp [ 46%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -c /<>/src/api/SamProgramChain.cpp [ 47%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o -c /<>/src/api/SamReadGroup.cpp [ 48%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -c /<>/src/api/SamReadGroupDictionary.cpp [ 50%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o -c /<>/src/api/SamSequence.cpp [ 51%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o -c /<>/src/api/SamSequenceDictionary.cpp [ 52%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o -c /<>/src/api/internal/bam/BamHeader_p.cpp [ 53%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o -c /<>/src/api/internal/bam/BamMultiReader_p.cpp In file included from /<>/src/api/internal/bam/BamMultiMerger_p.h:32, from /<>/src/api/internal/bam/BamMultiReader_p.h:29, from /<>/src/api/internal/bam/BamMultiReader_p.cpp:10: /<>/src/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/14/string:49, from /usr/x86_64-linux-gnu/include/c++/14/stdexcept:39, from /<>/src/shared/bamtools_global.h:72, from /<>/src/api/api_global.h:14, from /<>/src/api/internal/bam/BamMultiReader_p.h:13: /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -c /<>/src/api/internal/bam/BamRandomAccessController_p.cpp [ 55%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o -c /<>/src/api/internal/bam/BamReader_p.cpp [ 56%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o -c /<>/src/api/internal/bam/BamWriter_p.cpp [ 57%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o -c /<>/src/api/internal/index/BamIndexFactory_p.cpp [ 58%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o -c /<>/src/api/internal/index/BamStandardIndex_p.cpp [ 59%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o -c /<>/src/api/internal/index/BamToolsIndex_p.cpp [ 60%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o -c /<>/src/api/internal/io/BamDeviceFactory_p.cpp [ 61%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o -c /<>/src/api/internal/io/BamFile_p.cpp [ 62%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o -c /<>/src/api/internal/io/BamFtp_p.cpp [ 63%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o -c /<>/src/api/internal/io/BamHttp_p.cpp [ 64%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o -c /<>/src/api/internal/io/BamPipe_p.cpp [ 65%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o -c /<>/src/api/internal/io/BgzfStream_p.cpp [ 66%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o -c /<>/src/api/internal/io/ByteArray_p.cpp [ 67%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o -c /<>/src/api/internal/io/HostAddress_p.cpp [ 68%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o -c /<>/src/api/internal/io/HostInfo_p.cpp [ 69%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o -c /<>/src/api/internal/io/HttpHeader_p.cpp [ 70%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o -c /<>/src/api/internal/io/ILocalIODevice_p.cpp [ 71%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o -c /<>/src/api/internal/io/RollingBuffer_p.cpp [ 72%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o -c /<>/src/api/internal/io/TcpSocketEngine_p.cpp [ 73%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o -c /<>/src/api/internal/io/TcpSocket_p.cpp [ 74%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o -c /<>/src/api/internal/sam/SamFormatParser_p.cpp [ 75%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -c /<>/src/api/internal/sam/SamFormatPrinter_p.cpp [ 76%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -c /<>/src/api/internal/sam/SamHeaderValidator_p.cpp [ 77%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o -c /<>/src/api/internal/utils/BamException_p.cpp [ 78%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<>/src/api/internal/io/TcpSocketEngine_unix_p.cpp [ 79%] Linking CXX static library libbamtools.a cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/BamTools_static.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools_static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libbamtools.a CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libbamtools.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target BamTools_static make -f src/CMakeFiles/BamTools-utils.dir/build.make src/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/BamTools-utils.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/BamTools-utils.dir/build.make src/CMakeFiles/BamTools-utils.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o -c /<>/src/utils/bamtools_fasta.cpp [ 81%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o -c /<>/src/utils/bamtools_options.cpp [ 82%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o -c /<>/src/utils/bamtools_pileup_engine.cpp [ 83%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o -c /<>/src/utils/bamtools_utilities.cpp [ 84%] Linking CXX static library libBamTools-utils.a cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libBamTools-utils.a "CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o" "CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o" "CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o" "CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o" /usr/bin/x86_64-linux-gnu-ranlib libBamTools-utils.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target BamTools-utils make -f src/CMakeFiles/bamtools_cmd.dir/build.make src/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bamtools_cmd.dir/build.make src/CMakeFiles/bamtools_cmd.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o -c /<>/src/toolkit/bamtools.cpp [ 86%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o -c /<>/src/toolkit/bamtools_convert.cpp [ 87%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o -c /<>/src/toolkit/bamtools_count.cpp In file included from /<>/src/api/BamAlgorithms.h:15, from /<>/src/toolkit/bamtools_count.cpp:12: /<>/src/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/14/string:49, from /<>/src/toolkit/bamtools_tool.h:14, from /<>/src/toolkit/bamtools_count.h:13, from /<>/src/toolkit/bamtools_count.cpp:10: /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o -c /<>/src/toolkit/bamtools_coverage.cpp [ 89%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o -c /<>/src/toolkit/bamtools_filter.cpp [ 90%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o -c /<>/src/toolkit/bamtools_header.cpp [ 91%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o -c /<>/src/toolkit/bamtools_index.cpp [ 92%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o -c /<>/src/toolkit/bamtools_merge.cpp [ 93%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o -c /<>/src/toolkit/bamtools_random.cpp [ 94%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o -c /<>/src/toolkit/bamtools_resolve.cpp [ 95%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o -c /<>/src/toolkit/bamtools_revert.cpp [ 96%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o -c /<>/src/toolkit/bamtools_sort.cpp In file included from /<>/src/toolkit/bamtools_sort.cpp:15: /<>/src/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/14/string:49, from /<>/src/toolkit/bamtools_tool.h:14, from /<>/src/toolkit/bamtools_sort.h:13, from /<>/src/toolkit/bamtools_sort.cpp:10: /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o -c /<>/src/toolkit/bamtools_split.cpp [ 98%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<>/src -I/<>/obj-x86_64-linux-gnu/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o -c /<>/src/toolkit/bamtools_stats.cpp [100%] Linking CXX executable bamtools cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o -o bamtools -Wl,-rpath,/<>/obj-x86_64-linux-gnu/src: libBamTools-utils.a -L/usr/lib/x86_64-linux-gnu -ljsoncpp libbamtools.so.2.5.2 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target bamtools_cmd make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/<>/bamtools-2.5.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.2 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.a -- Installing: /<>/debian/tmp/usr/bin/bamtools -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/bamtools" to "" -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamAlignment.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamAux.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamConstants.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamIndex.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamMultiReader.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamReader.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/BamWriter.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/IBamIODevice.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamConstants.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamHeader.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamProgram.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamProgramChain.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamReadGroup.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamSequence.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/api_global.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/bamtools_api_export.h -- Installing: /<>/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h -- Installing: /<>/debian/tmp/usr/include/bamtools/shared/bamtools_global.h -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/bamtools-1.pc make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install --arch d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbamtools-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbamtools2.5.2/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.a debian/libbamtools-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so debian/libbamtools-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.2 debian/libbamtools2.5.2/usr/lib/x86_64-linux-gnu PKGDEV=libbamtools-dev PKGSHL=libbamtools2.5.2 install -d -m 755 debian/libbamtools-dev/usr/include mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include install -d -m 755 debian/libbamtools-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libbamtools-dev/usr/lib/x86_64-linux-gnu/pkgconfig make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'bamtools' in '../bamtools_2.5.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.5.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'libbamtools2.5.2' in '../libbamtools2.5.2_2.5.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'libbamtools2.5.2-dbgsym' in '../libbamtools2.5.2-dbgsym_2.5.2+dfsg-6_amd64.deb'. dpkg-genbuildinfo --build=any -O../bamtools_2.5.2+dfsg-6_amd64.buildinfo dpkg-genchanges --build=any -O../bamtools_2.5.2+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-11-10T13:44:57Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bamtools_2.5.2+dfsg-6_amd64.changes: ------------------------------------ Format: 1.8 Date: Fri, 12 Jul 2024 13:46:23 +0200 Source: bamtools Binary: bamtools bamtools-dbgsym libbamtools-dev libbamtools2.5.2 libbamtools2.5.2-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 2.5.2+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: bamtools - toolkit for manipulating BAM (genome alignment) files libbamtools-dev - C++ API for manipulating BAM (genome alignment) files libbamtools2.5.2 - dynamic library for manipulating BAM (genome alignment) files Closes: 1075990 Changes: bamtools (2.5.2+dfsg-6) unstable; urgency=medium . * Fix output data on bigendian architectures (Thanks a lot for the patch from Vladimir Petko !) Closes: #1075990 * Standards-Version: 4.7.0 (routine-update) * Build-Depends: s/pkg-config/pkgconf/ Checksums-Sha1: 16b11d5dd56abac5a7eea8d07b28cc74680514a8 3570504 bamtools-dbgsym_2.5.2+dfsg-6_amd64.deb 2257e8fdffb777abadab64e7a640824eae939b22 7536 bamtools_2.5.2+dfsg-6_amd64.buildinfo 61062a3f4e79a8063458bcbdaf108d749dbedcfd 207144 bamtools_2.5.2+dfsg-6_amd64.deb a2d7a659fc56981fdc0c5002fc680c7de94cc3bc 222116 libbamtools-dev_2.5.2+dfsg-6_amd64.deb f6e89c16f0eb39b5cff33b31a5c4b22c724ef53b 2768092 libbamtools2.5.2-dbgsym_2.5.2+dfsg-6_amd64.deb 3f04ecbe2904a0c42b7ee469dcc5a8a89cbb0978 160912 libbamtools2.5.2_2.5.2+dfsg-6_amd64.deb Checksums-Sha256: 77201dc5f92c3b6538c94d1a488fb862352d07454de1629890dff48a12c523ef 3570504 bamtools-dbgsym_2.5.2+dfsg-6_amd64.deb 89b54a26ee315b657724945c4db917b82307321222def553b6a4d39ced011661 7536 bamtools_2.5.2+dfsg-6_amd64.buildinfo 4a9fdb4e5bb928b99238a16d0679b58b6af1fe5df7ce65ea615b782cc38a3ad7 207144 bamtools_2.5.2+dfsg-6_amd64.deb 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1.8.1-4), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-6), rpcsvc-proto (= 1.4.3-1+b1), sed (= 4.9-2+b1), sensible-utils (= 0.0.24), sysvinit-utils (= 3.11-1), tar (= 1.35+dfsg-3+b1), util-linux (= 2.40.2-10), xz-utils (= 5.6.3-1+b1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1720784783" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bamtools-dbgsym_2.5.2+dfsg-6_amd64.deb -------------------------------------- new Debian package, version 2.0. size 3570504 bytes: control archive=540 bytes. 385 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: bamtools-dbgsym Source: bamtools Version: 2.5.2+dfsg-6 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3610 Depends: bamtools (= 2.5.2+dfsg-6) Section: debug Priority: optional Description: debug symbols for bamtools Build-Ids: aaf2af1e27cbbbadedcfd8de06c22b6ff61d4b15 drwxr-xr-x root/root 0 2024-07-12 11:46 ./ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/debug/.build-id/aa/ -rw-r--r-- root/root 3686328 2024-07-12 11:46 ./usr/lib/debug/.build-id/aa/f2af1e27cbbbadedcfd8de06c22b6ff61d4b15.debug drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-07-12 11:46 ./usr/share/doc/bamtools-dbgsym -> bamtools bamtools_2.5.2+dfsg-6_amd64.deb ------------------------------- new Debian package, version 2.0. size 207144 bytes: control archive=1484 bytes. 1810 bytes, 37 lines control 551 bytes, 8 lines md5sums Package: bamtools Version: 2.5.2+dfsg-6 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 689 Depends: libbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libjsoncpp26 (>= 1.9.6), libstdc++6 (>= 13.1) Section: science Priority: optional Homepage: https://github.com/pezmaster31/bamtools/wiki Description: toolkit for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the bamtools command-line toolkit. . Available bamtools commands: convert Converts between BAM and a number of other formats count Prints number of alignments in BAM file(s) coverage Prints coverage statistics from the input BAM file filter Filters BAM file(s) by user-specified criteria header Prints BAM header information index Generates index for BAM file merge Merge multiple BAM files into single file random Select random alignments from existing BAM file(s), intended more as a testing tool. resolve Resolves paired-end reads (marking the IsProperPair flag as needed) revert Removes duplicate marks and restores original base qualities sort Sorts the BAM file according to some criteria split Splits a BAM file on user-specified property, creating a new BAM output file for each value found stats Prints some basic statistics from input BAM file(s) drwxr-xr-x root/root 0 2024-07-12 11:46 ./ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/bin/ -rwxr-xr-x root/root 686424 2024-07-12 11:46 ./usr/bin/bamtools drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/doc/bamtools/ -rw-r--r-- root/root 262 2024-07-12 11:46 ./usr/share/doc/bamtools/README.test -rw-r--r-- root/root 1578 2024-07-12 11:46 ./usr/share/doc/bamtools/changelog.Debian.gz -rw-r--r-- root/root 1665 2024-07-12 11:46 ./usr/share/doc/bamtools/copyright -rw-r--r-- root/root 352 2024-07-12 11:46 ./usr/share/doc/bamtools/filter_script -rw-r--r-- root/root 970 2024-07-12 11:46 ./usr/share/doc/bamtools/run-unit-test -rw-r--r-- root/root 375 2024-07-12 11:46 ./usr/share/doc/bamtools/sam_spec_example.bam drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/man/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/man/man1/ -rw-r--r-- root/root 792 2024-07-12 11:46 ./usr/share/man/man1/bamtools.1.gz libbamtools-dev_2.5.2+dfsg-6_amd64.deb -------------------------------------- new Debian package, version 2.0. size 222116 bytes: control archive=1620 bytes. 969 bytes, 25 lines control 1966 bytes, 26 lines md5sums Package: libbamtools-dev Source: bamtools Version: 2.5.2+dfsg-6 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1449 Depends: libbamtools2.5.2 (= 2.5.2+dfsg-6), zlib1g-dev Suggests: libbamtools-doc (= 2.5.2+dfsg-6) Breaks: libbamtools2.5.1 Replaces: libbamtools2.5.1 Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/pezmaster31/bamtools/wiki Description: C++ API for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the developers API package. drwxr-xr-x root/root 0 2024-07-12 11:46 ./ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/include/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/include/bamtools/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/include/bamtools/api/ -rw-r--r-- root/root 848 2021-06-20 19:43 ./usr/include/bamtools/api/BamAlgorithms.h -rw-r--r-- root/root 22982 2021-06-20 19:43 ./usr/include/bamtools/api/BamAlignment.h -rw-r--r-- root/root 10700 2021-06-20 19:43 ./usr/include/bamtools/api/BamAux.h -rw-r--r-- root/root 9282 2021-06-20 19:43 ./usr/include/bamtools/api/BamConstants.h -rw-r--r-- root/root 2754 2021-06-20 19:43 ./usr/include/bamtools/api/BamIndex.h -rw-r--r-- root/root 4242 2021-06-20 19:43 ./usr/include/bamtools/api/BamMultiReader.h -rw-r--r-- root/root 3780 2021-06-20 19:43 ./usr/include/bamtools/api/BamReader.h -rw-r--r-- root/root 1950 2021-06-20 19:43 ./usr/include/bamtools/api/BamWriter.h -rw-r--r-- root/root 2818 2021-06-20 19:43 ./usr/include/bamtools/api/IBamIODevice.h -rw-r--r-- root/root 3491 2021-06-20 19:43 ./usr/include/bamtools/api/SamConstants.h -rw-r--r-- root/root 2842 2021-06-20 19:43 ./usr/include/bamtools/api/SamHeader.h -rw-r--r-- root/root 2261 2021-06-20 19:43 ./usr/include/bamtools/api/SamProgram.h -rw-r--r-- root/root 2822 2021-06-20 19:43 ./usr/include/bamtools/api/SamProgramChain.h -rw-r--r-- root/root 3189 2021-06-20 19:43 ./usr/include/bamtools/api/SamReadGroup.h -rw-r--r-- root/root 2987 2021-06-20 19:43 ./usr/include/bamtools/api/SamReadGroupDictionary.h -rw-r--r-- root/root 2540 2021-06-20 19:43 ./usr/include/bamtools/api/SamSequence.h -rw-r--r-- root/root 2950 2021-06-20 19:43 ./usr/include/bamtools/api/SamSequenceDictionary.h drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/include/bamtools/api/algorithms/ -rw-r--r-- root/root 12403 2021-06-20 19:43 ./usr/include/bamtools/api/algorithms/Sort.h -rw-r--r-- root/root 663 2021-06-20 19:43 ./usr/include/bamtools/api/api_global.h -rw-r--r-- root/root 1037 2024-07-12 11:46 ./usr/include/bamtools/api/bamtools_api_export.h drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/include/bamtools/shared/ -rw-r--r-- root/root 2136 2021-06-20 19:43 ./usr/include/bamtools/shared/bamtools_global.h drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 1348972 2024-07-12 11:46 ./usr/lib/x86_64-linux-gnu/libbamtools.a lrwxrwxrwx root/root 0 2024-07-12 11:46 ./usr/lib/x86_64-linux-gnu/libbamtools.so -> libbamtools.so.2.5.2 drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/x86_64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 260 2024-07-12 11:46 ./usr/lib/x86_64-linux-gnu/pkgconfig/bamtools-1.pc drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/cmake/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/cmake/bamtools/ -rw-r--r-- root/root 1574 2024-07-12 11:46 ./usr/share/cmake/bamtools/bamtools-config.cmake drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/doc/libbamtools-dev/ -rw-r--r-- root/root 1581 2024-07-12 11:46 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz -rw-r--r-- root/root 1665 2024-07-12 11:46 ./usr/share/doc/libbamtools-dev/copyright libbamtools2.5.2-dbgsym_2.5.2+dfsg-6_amd64.deb ---------------------------------------------- new Debian package, version 2.0. size 2768092 bytes: control archive=556 bytes. 426 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libbamtools2.5.2-dbgsym Source: bamtools Version: 2.5.2+dfsg-6 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 2839 Depends: libbamtools2.5.2 (= 2.5.2+dfsg-6) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libbamtools2.5.2 Build-Ids: c6523274b9e5c8c72744f52bd4e3247fe036a13e drwxr-xr-x root/root 0 2024-07-12 11:46 ./ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/debug/.build-id/c6/ -rw-r--r-- root/root 2896624 2024-07-12 11:46 ./usr/lib/debug/.build-id/c6/523274b9e5c8c72744f52bd4e3247fe036a13e.debug drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-07-12 11:46 ./usr/share/doc/libbamtools2.5.2-dbgsym -> libbamtools2.5.2 libbamtools2.5.2_2.5.2+dfsg-6_amd64.deb --------------------------------------- new Debian package, version 2.0. size 160912 bytes: control archive=1068 bytes. 904 bytes, 22 lines control 240 bytes, 3 lines md5sums 51 bytes, 1 lines shlibs 66 bytes, 2 lines triggers Package: libbamtools2.5.2 Source: bamtools Version: 2.5.2+dfsg-6 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 497 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/pezmaster31/bamtools/wiki Description: dynamic library for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the runtime library. drwxr-xr-x root/root 0 2024-07-12 11:46 ./ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 493592 2024-07-12 11:46 ./usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.2 drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-07-12 11:46 ./usr/share/doc/libbamtools2.5.2/ -rw-r--r-- root/root 1582 2024-07-12 11:46 ./usr/share/doc/libbamtools2.5.2/changelog.Debian.gz -rw-r--r-- root/root 1665 2024-07-12 11:46 ./usr/share/doc/libbamtools2.5.2/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1369 B] Get:5 copy:/<>/apt_archive ./ Packages [1448 B] Fetched 3432 B in 0s (164 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libglib2.0-0t64 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl low-memory-monitor libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libglib2.0-0t64 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:amd64 shared-mime-info t1utils ucf unzip 0 upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 15.9 MB of archives. After this operation, 71.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b1 [755 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libstemmer0d arm64 2.2.0-4+b2 [111 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libxmlb2 arm64 0.3.21-1 [59.1 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1+b2 [49.3 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libappstream5 arm64 1.0.3-1+b1 [208 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 appstream arm64 1.0.3-1+b1 [467 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.66-1+b1 [32.6 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libassuan9 arm64 3.0.1-2 [58.1 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.45-2 [114 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.2.45-2 [481 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.17.0-1 [3055 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.40+b6 [63.8 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:34 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.66-1 [115 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b1 [97.5 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.66-1 [217 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:43 http://mirror.einval.org/debian unstable/main arm64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b4 [34.9 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:53 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.38-1+b1 [127 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-1+b4 [31.2 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b4 [97.7 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.84-1+b1 [24.1 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b4 [28.2 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libnumber-compare-perl all 0.03-3 [6332 B] Get:73 http://mirror.einval.org/debian unstable/main arm64 libtext-glob-perl all 0.11-3 [7676 B] Get:74 http://mirror.einval.org/debian unstable/main arm64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:90 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.15~pre2-1 [38.1 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3+b1 [49.6 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2+b1 [33.2 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:113 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.11-1+b1 [141 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.146-1 [56.2 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b4 [17.4 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b3 [11.4 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1+b3 [41.7 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b3 [96.7 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b3 [99.0 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:126 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.46-1+b1 [63.6 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.30-1+b1 [27.1 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b4 [24.5 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b4 [8772 B] Get:130 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1+b3 [13.1 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2+b1 [172 kB] Get:132 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:133 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b4 [72.0 kB] Get:134 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2+b3 [20.1 kB] Get:135 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.19-1 [114 kB] Get:136 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:137 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:138 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:139 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-5+b1 [300 kB] Get:140 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.902.0+ds-2+b1 [33.9 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.11-2 [58.9 kB] Get:142 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2+b1 [82.3 kB] Get:143 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1+b1 [71.3 kB] Get:144 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB] Get:145 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get:146 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.120.0 [1058 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.9 MB in 0s (53.2 MB/s) Selecting previously unselected package netbase. (Reading database ... 22175 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package ucf. Preparing to unpack .../004-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../005-libglib2.0-0t64_2.82.2-2_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.82.2-2) ... 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Selecting previously unselected package sbuild-build-depends-lintian-dummy:amd64. Preparing to unpack .../145-sbuild-build-depends-lintian-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b6) ... Setting up liblz1:arm64 (1.15~pre2-1) ... Setting up libberkeleydb-perl:arm64 (0.66-1) ... Setting up plzip (1.11-2) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b3) ... Setting up libmouse-perl:arm64 (2.5.11-1+b1) ... Setting up libdata-messagepack-perl (1.02-1+b4) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libyaml-0-2:arm64 (0.2.5-1+b2) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libcpanel-json-xs-perl:arm64 (4.38-1+b1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1+b1) ... Setting up unzip (6.0-28+b1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.902.0+ds-2+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up liblzo2-2:arm64 (2.10-3+b1) ... Setting up libtime-moment-perl (0.44-2+b4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b3) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.2-1+b1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b4) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b3) ... Setting up t1utils (1.41-4+b1) ... Setting up shared-mime-info (2.4-5+b1) ... Setting up diffstat (1.66-1+b1) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up ucf (3.0043+nmu1) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-2+b1) ... Setting up libnghttp3-9:arm64 (1.4.0-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:arm64 (0.27-1+b3) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:arm64 (0.636-1+b3) ... Setting up libpath-tiny-perl (0.146-1) ... Setting up lzop (1.04-2+b1) ... Setting up libassuan9:arm64 (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:arm64 (1.6.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b4) ... Setting up libstemmer0d:arm64 (2.2.0-4+b2) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.3.2-2) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up readline-common (8.2-5) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:arm64 (2.2.7-2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up iso-codes (4.17.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:arm64 (1.94-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libxmlb2:arm64 (0.3.21-1) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b3) ... Setting up libappstream5:arm64 (1.0.3-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.46-1+b1) ... Setting up appstream (1.0.3-1+b1) ... ✔ Metadata cache was updated successfully. Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.30-1+b1) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b1) ... Setting up gpgconf (2.2.45-2) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.45-2) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libcgi-pm-perl (4.66-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.19-1) ... Setting up lintian (2.120.0) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 160768 Build-Time: 530 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 58 Job: bamtools_2.5.2+dfsg-6 Lintian: pass Machine Architecture: arm64 Package: bamtools Package-Time: 626 Source-Version: 2.5.2+dfsg-6 Space: 160768 Status: successful Version: 2.5.2+dfsg-6 -------------------------------------------------------------------------------- Finished at 2024-11-10T13:44:57Z Build needed 00:10:26, 160768k disk space