sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley

+==============================================================================+
| bedops 2.4.41+dfsg-3 (arm64)                 Sun, 22 Dec 2024 09:41:53 +0000 |
+==============================================================================+

Package: bedops
Version: 2.4.41+dfsg-3
Source Version: 2.4.41+dfsg-3
Distribution: unstable
Machine Architecture: amd64
Host Architecture: arm64
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-e802579e-8d2d-40b0-860f-a60431b48676' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/bedops-hssgfK/resolver-vHPCEG' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://localhost:3142/debian unstable InRelease [202 kB]
Get:2 http://localhost:3142/debian unstable/non-free Sources [83.1 kB]
Get:3 http://localhost:3142/debian unstable/non-free-firmware Sources [6880 B]
Get:4 http://localhost:3142/debian unstable/main Sources [11.0 MB]
Get:5 http://localhost:3142/debian unstable/contrib Sources [62.9 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 Packages [10.1 MB]
Get:7 http://localhost:3142/debian unstable/main arm64 Packages [10.0 MB]
Fetched 31.5 MB in 3s (11.5 MB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  apt base-files base-passwd bash binutils binutils-common
  binutils-x86-64-linux-gnu bsdutils coreutils cpp-14 cpp-14-x86-64-linux-gnu
  debianutils e2fsprogs g++-14 g++-14-x86-64-linux-gnu gcc-14 gcc-14-base
  gcc-14-x86-64-linux-gnu gpgv gzip libacl1 libapt-pkg6.0t64 libasan8
  libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin
  libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2
  libctf-nobfd0 libctf0 libdebconfclient0 libext2fs2t64 libgcc-14-dev
  libgcc-s1 libgmp10 libgnutls30t64 libgomp1 libgpg-error0 libgprofng0
  libhogweed6t64 libhwasan0 libidn2-0 libitm1 libjansson4 liblsan0 liblz4-1
  liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libnettle8t64 libp11-kit0
  libpam-modules libpam-modules-bin libpam0g libpcre2-8-0 libperl5.40
  libquadmath0 libseccomp2 libselinux1 libsemanage2 libsframe1 libsmartcols1
  libss2 libssl3t64 libstdc++-14-dev libstdc++6 libsystemd0 libtasn1-6
  libtinfo6 libtsan2 libubsan1 libudev1 libunistring5 libuuid1 libxxhash0
  libzstd1 linux-libc-dev login login.defs logsave make mount ncurses-bin
  openssl-provider-legacy passwd perl perl-base perl-modules-5.40
  sysvinit-utils tar tzdata util-linux xz-utils zlib1g
104 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 108 MB of archives.
After this operation, 686 kB of additional disk space will be used.
Get:1 http://localhost:3142/debian unstable/main amd64 libc6-dev amd64 2.40-4 [1954 kB]
Get:2 http://localhost:3142/debian unstable/main amd64 libc-dev-bin amd64 2.40-4 [52.0 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 linux-libc-dev all 6.12.6-1 [2478 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libcc1-0 amd64 14.2.0-11 [42.9 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 gcc-14-base amd64 14.2.0-11 [48.0 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 libgcc-s1 amd64 14.2.0-11 [72.7 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 libgomp1 amd64 14.2.0-11 [137 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 libitm1 amd64 14.2.0-11 [26.0 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 libatomic1 amd64 14.2.0-11 [9284 B]
Get:10 http://localhost:3142/debian unstable/main amd64 libasan8 amd64 14.2.0-11 [2728 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 liblsan0 amd64 14.2.0-11 [1205 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 libtsan2 amd64 14.2.0-11 [2461 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 libubsan1 amd64 14.2.0-11 [1075 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 libhwasan0 amd64 14.2.0-11 [1489 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 libquadmath0 amd64 14.2.0-11 [146 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 gcc-14 amd64 14.2.0-11 [534 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 g++-14 amd64 14.2.0-11 [20.4 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-11 [12.1 MB]
Get:19 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev amd64 14.2.0-11 [2373 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev amd64 14.2.0-11 [2673 kB]
Get:21 http://localhost:3142/debian unstable/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-11 [21.4 MB]
Get:22 http://localhost:3142/debian unstable/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-11 [11.0 MB]
Get:23 http://localhost:3142/debian unstable/main amd64 cpp-14 amd64 14.2.0-11 [1284 B]
Get:24 http://localhost:3142/debian unstable/main amd64 libstdc++6 amd64 14.2.0-11 [713 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 libgprofng0 amd64 2.43.50.20241221-1 [809 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 libctf0 amd64 2.43.50.20241221-1 [88.5 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libctf-nobfd0 amd64 2.43.50.20241221-1 [155 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 libsframe1 amd64 2.43.50.20241221-1 [77.5 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libzstd1 amd64 1.5.6+dfsg-1+b1 [300 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 libbinutils amd64 2.43.50.20241221-1 [532 kB]
Get:33 http://localhost:3142/debian unstable/main amd64 binutils-common amd64 2.43.50.20241221-1 [2626 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 binutils amd64 2.43.50.20241221-1 [68.3 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.43.50.20241221-1 [2274 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3 [560 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 libmpfr6 amd64 4.2.1-1+b2 [724 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libmpc3 amd64 1.3.1-1+b3 [52.2 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libc6 amd64 2.40-4 [2804 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 base-files amd64 13.6 [72.8 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 debianutils amd64 5.21 [92.1 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 bash amd64 5.2.37-1 [1501 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 bsdutils amd64 1:2.40.2-12 [106 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 coreutils amd64 9.5-1+b1 [2922 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 gzip amd64 1.12-1.2 [134 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 ncurses-bin amd64 6.5-2+b1 [434 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 libperl5.40 amd64 5.40.0-8 [4320 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 perl amd64 5.40.0-8 [267 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 perl-base amd64 5.40.0-8 [1675 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 perl-modules-5.40 all 5.40.0-8 [3015 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 libuuid1 amd64 2.40.2-12 [36.0 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 libblkid1 amd64 2.40.2-12 [168 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 libmount1 amd64 2.40.2-12 [199 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libsmartcols1 amd64 2.40.2-12 [139 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 util-linux amd64 2.40.2-12 [1209 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 mount amd64 2.40.2-12 [155 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 libpcre2-8-0 amd64 10.44-5 [275 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 libselinux1 amd64 3.7-3+b1 [77.0 kB]
Get:60 http://localhost:3142/debian unstable/main amd64 libxxhash0 amd64 0.8.2-2+b2 [26.6 kB]
Get:61 http://localhost:3142/debian unstable/main amd64 liblz4-1 amd64 1.9.4-3+b1 [60.3 kB]
Get:62 http://localhost:3142/debian unstable/main amd64 liblzma5 amd64 5.6.3-1+b1 [272 kB]
Get:63 http://localhost:3142/debian unstable/main amd64 libcap2 amd64 1:2.66-5+b1 [27.8 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 libsystemd0 amd64 257.1-3 [449 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 libudev1 amd64 257.1-3 [148 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 libapt-pkg6.0t64 amd64 2.9.18 [1113 kB]
Get:67 http://localhost:3142/debian unstable/main amd64 libdebconfclient0 amd64 0.274 [10.1 kB]
Get:68 http://localhost:3142/debian unstable/main amd64 base-passwd amd64 3.6.5 [53.1 kB]
Get:69 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.51-2 [82.1 kB]
Get:70 http://localhost:3142/debian unstable/main amd64 gpgv amd64 2.2.45-2 [219 kB]
Get:71 http://localhost:3142/debian unstable/main amd64 libnettle8t64 amd64 3.10-1+b1 [305 kB]
Get:72 http://localhost:3142/debian unstable/main amd64 libhogweed6t64 amd64 3.10-1+b1 [335 kB]
Get:73 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get:74 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB]
Get:75 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-2+b1 [429 kB]
Get:76 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB]
Get:77 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB]
Get:78 http://localhost:3142/debian unstable/main amd64 libseccomp2 amd64 2.5.5-2 [47.8 kB]
Get:79 http://localhost:3142/debian unstable/main amd64 apt amd64 2.9.18 [1370 kB]
Get:80 http://localhost:3142/debian unstable/main amd64 libc-bin amd64 2.40-4 [626 kB]
Get:81 http://localhost:3142/debian unstable/main amd64 sysvinit-utils amd64 3.11-1 [33.1 kB]
Get:82 http://localhost:3142/debian unstable/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB]
Get:83 http://localhost:3142/debian unstable/main amd64 libcap-ng0 amd64 0.8.5-4 [17.3 kB]
Get:84 http://localhost:3142/debian unstable/main amd64 libaudit1 amd64 1:4.0.2-2 [54.9 kB]
Get:85 http://localhost:3142/debian unstable/main amd64 libpam0g amd64 1.5.3-7+b1 [68.3 kB]
Get:86 http://localhost:3142/debian unstable/main amd64 libpam-modules-bin amd64 1.5.3-7+b1 [54.1 kB]
Get:87 http://localhost:3142/debian unstable/main amd64 libpam-modules amd64 1.5.3-7+b1 [267 kB]
Get:88 http://localhost:3142/debian unstable/main amd64 logsave amd64 1.47.2~rc1-2 [23.6 kB]
Get:89 http://localhost:3142/debian unstable/main amd64 libext2fs2t64 amd64 1.47.2~rc1-2 [211 kB]
Get:90 http://localhost:3142/debian unstable/main amd64 e2fsprogs amd64 1.47.2~rc1-2 [588 kB]
Get:91 http://localhost:3142/debian unstable/main amd64 login amd64 1:4.16.0-2+really2.40.2-12 [81.8 kB]
Get:92 http://localhost:3142/debian unstable/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB]
Get:93 http://localhost:3142/debian unstable/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB]
Get:94 http://localhost:3142/debian unstable/main amd64 openssl-provider-legacy amd64 3.3.2-2 [298 kB]
Get:95 http://localhost:3142/debian unstable/main amd64 libssl3t64 amd64 3.3.2-2 [2271 kB]
Get:96 http://localhost:3142/debian unstable/main amd64 libtinfo6 amd64 6.5-2+b1 [344 kB]
Get:97 http://localhost:3142/debian unstable/main amd64 login.defs all 1:4.16.0-7 [185 kB]
Get:98 http://localhost:3142/debian unstable/main amd64 libsemanage2 amd64 3.7-2+b1 [91.2 kB]
Get:99 http://localhost:3142/debian unstable/main amd64 passwd amd64 1:4.16.0-7 [1233 kB]
Get:100 http://localhost:3142/debian unstable/main amd64 tzdata all 2024b-4 [256 kB]
Get:101 http://localhost:3142/debian unstable/main amd64 xz-utils amd64 5.6.3-1+b1 [542 kB]
Get:102 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB]
Get:103 http://localhost:3142/debian unstable/main amd64 libss2 amd64 1.47.2~rc1-2 [28.4 kB]
Get:104 http://localhost:3142/debian unstable/main amd64 make amd64 4.4.1-1 [463 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Current default time zone: 'Etc/UTC'
Local time is now:      Sun Dec 22 09:42:09 UTC 2024.
Universal Time is now:  Sun Dec 22 09:42:09 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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Setting up libitm1:amd64 (14.2.0-11) ...
Setting up login (1:4.16.0-2+really2.40.2-12) ...
Setting up libctf0:amd64 (2.43.50.20241221-1) ...
Setting up e2fsprogs (1.47.2~rc1-2) ...
Setting up libperl5.40:amd64 (5.40.0-8) ...
Setting up perl (5.40.0-8) ...
Setting up libgprofng0:amd64 (2.43.50.20241221-1) ...
Setting up passwd (1:4.16.0-7) ...
Setting up libc6-dev:amd64 (2.40-4) ...
Setting up libgcc-14-dev:amd64 (14.2.0-11) ...
Setting up libstdc++-14-dev:amd64 (14.2.0-11) ...
Setting up binutils-x86-64-linux-gnu (2.43.50.20241221-1) ...
Setting up binutils (2.43.50.20241221-1) ...
Setting up gcc-14-x86-64-linux-gnu (14.2.0-11) ...
Setting up gcc-14 (14.2.0-11) ...
Setting up g++-14-x86-64-linux-gnu (14.2.0-11) ...
Setting up g++-14 (14.2.0-11) ...
Processing triggers for debianutils (5.21) ...
Processing triggers for libc-bin (2.40-4) ...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'bedops' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/bedops.git
Please use:
git clone https://salsa.debian.org/med-team/bedops.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 13.5 MB of source archives.
Get:1 http://localhost:3142/debian unstable/main bedops 2.4.41+dfsg-3 (dsc) [2227 B]
Get:2 http://localhost:3142/debian unstable/main bedops 2.4.41+dfsg-3 (tar) [13.5 MB]
Get:3 http://localhost:3142/debian unstable/main bedops 2.4.41+dfsg-3 (diff) [10.9 kB]
Fetched 13.5 MB in 0s (180 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bedops-hssgfK/bedops-2.4.41+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bedops-hssgfK' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, libjansson-dev, zlib1g-dev, tcsh, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
Filtered Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, libjansson-dev, zlib1g-dev, tcsh, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [770 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [813 B]
Fetched 2192 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu
  bsdextrautils cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
  crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism
  dwz fakeroot file g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu
  gcc-14-aarch64-linux-gnu gcc-14-aarch64-linux-gnu-base gcc-14-base:arm64
  gcc-14-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base
  help2man intltool-debian libarchive-zip-perl libasan8:arm64
  libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross
  libbz2-1.0:arm64 libbz2-dev:arm64 libc6:arm64 libc6-arm64-cross
  libc6-dev:arm64 libc6-dev-arm64-cross libcrypt-dev:arm64 libcrypt1:arm64
  libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl
  libgcc-14-dev:arm64 libgcc-14-dev-arm64-cross libgcc-s1:arm64
  libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libhwasan0:arm64
  libhwasan0-arm64-cross libicu72 libitm1:arm64 libitm1-arm64-cross
  libjansson-dev:arm64 libjansson4:arm64 liblocale-gettext-perl liblsan0:arm64
  liblsan0-arm64-cross libmagic-mgc libmagic1t64 libpipeline1
  libstdc++-14-dev:arm64 libstdc++-14-dev-arm64-cross libstdc++6:arm64
  libstdc++6-arm64-cross libtool libtsan2:arm64 libtsan2-arm64-cross
  libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml2
  linux-libc-dev-arm64-cross m4 man-db po-debconf sensible-utils tcsh
  zlib1g:arm64 zlib1g-dev:arm64
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales
  cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison
  gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev
  groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64
  libnss-nisplus:arm64 manpages-dev:arm64 libstdc++-14-doc:arm64 libtool-doc
  gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl
Recommended packages:
  curl | wget | lynx bzip2-doc:arm64 libidn2-0:arm64 libarchive-cpio-perl
  libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu
  bsdextrautils cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
  crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism
  dwz fakeroot file g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu
  gcc-14-aarch64-linux-gnu gcc-14-aarch64-linux-gnu-base gcc-14-base:arm64
  gcc-14-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base
  help2man intltool-debian libarchive-zip-perl libasan8:arm64
  libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross
  libbz2-1.0:arm64 libbz2-dev:arm64 libc6:arm64 libc6-arm64-cross
  libc6-dev:arm64 libc6-dev-arm64-cross libcrypt-dev:arm64 libcrypt1:arm64
  libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl
  libgcc-14-dev:arm64 libgcc-14-dev-arm64-cross libgcc-s1:arm64
  libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libhwasan0:arm64
  libhwasan0-arm64-cross libicu72 libitm1:arm64 libitm1-arm64-cross
  libjansson-dev:arm64 libjansson4:arm64 liblocale-gettext-perl liblsan0:arm64
  liblsan0-arm64-cross libmagic-mgc libmagic1t64 libpipeline1
  libstdc++-14-dev:arm64 libstdc++-14-dev-arm64-cross libstdc++6:arm64
  libstdc++6-arm64-cross libtool libtsan2:arm64 libtsan2-arm64-cross
  libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml2
  linux-libc-dev-arm64-cross m4 man-db po-debconf
  sbuild-build-depends-main-dummy:arm64 sensible-utils tcsh zlib1g:arm64
  zlib1g-dev:arm64
0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded.
Need to get 101 MB of archives.
After this operation, 446 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B]
Get:2 http://localhost:3142/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.22.5-3 [200 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-6 [1184 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 autopoint all 0.22.5-3 [723 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.43.50.20241221-1 [4035 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 gcc-14-aarch64-linux-gnu-base amd64 14.2.0-6cross1 [47.0 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 cpp-14-aarch64-linux-gnu amd64 14.2.0-6cross1 [11.2 MB]
Get:21 http://localhost:3142/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:14.2.0-1 [4844 B]
Get:22 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-6cross1 [42.2 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 libc6-arm64-cross all 2.40-3cross1 [1141 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 libgcc-s1-arm64-cross all 14.2.0-6cross1 [54.0 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libgomp1-arm64-cross all 14.2.0-6cross1 [91.7 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 libitm1-arm64-cross all 14.2.0-6cross1 [25.9 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 libatomic1-arm64-cross all 14.2.0-6cross1 [10.3 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libasan8-arm64-cross all 14.2.0-6cross1 [436 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 liblsan0-arm64-cross all 14.2.0-6cross1 [201 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 libtsan2-arm64-cross all 14.2.0-6cross1 [415 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libstdc++6-arm64-cross all 14.2.0-6cross1 [546 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 libubsan1-arm64-cross all 14.2.0-6cross1 [186 kB]
Get:33 http://localhost:3142/debian unstable/main amd64 libhwasan0-arm64-cross all 14.2.0-6cross1 [256 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-arm64-cross all 14.2.0-6cross1 [2458 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 gcc-14-aarch64-linux-gnu amd64 14.2.0-6cross1 [21.6 MB]
Get:36 http://localhost:3142/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:14.2.0-1 [1448 B]
Get:37 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-arm64-cross all 6.11.2-1cross1 [2241 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libc6-dev-arm64-cross all 2.40-3cross1 [1585 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-arm64-cross all 14.2.0-6cross1 [2543 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 g++-14-aarch64-linux-gnu amd64 14.2.0-6cross1 [12.2 MB]
Get:41 http://localhost:3142/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:14.2.0-1 [1200 B]
Get:42 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-arm64 all 12.12 [3548 B]
Get:43 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.22 [90.5 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:49 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.22.5-3 [1600 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 debhelper all 13.22 [919 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.36.2-1 [29.6 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.36.2-1 [75.4 kB]
Get:59 http://localhost:3142/debian unstable/main arm64 gcc-14-base arm64 14.2.0-11 [48.0 kB]
Get:60 http://localhost:3142/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB]
Get:61 http://localhost:3142/debian unstable/main arm64 libgcc-s1 arm64 14.2.0-11 [54.1 kB]
Get:62 http://localhost:3142/debian unstable/main arm64 libc6 arm64 2.40-4 [2457 kB]
Get:63 http://localhost:3142/debian unstable/main arm64 libasan8 arm64 14.2.0-11 [2577 kB]
Get:64 http://localhost:3142/debian unstable/main arm64 libatomic1 arm64 14.2.0-11 [10.1 kB]
Get:65 http://localhost:3142/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-6 [37.8 kB]
Get:66 http://localhost:3142/debian unstable/main arm64 libcrypt1 arm64 1:4.4.36-5 [91.6 kB]
Get:67 http://localhost:3142/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:68 http://localhost:3142/debian unstable/main arm64 libc6-dev arm64 2.40-4 [1591 kB]
Get:69 http://localhost:3142/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB]
Get:70 http://localhost:3142/debian unstable/main arm64 libgomp1 arm64 14.2.0-11 [124 kB]
Get:71 http://localhost:3142/debian unstable/main arm64 libitm1 arm64 14.2.0-11 [24.1 kB]
Get:72 http://localhost:3142/debian unstable/main arm64 liblsan0 arm64 14.2.0-11 [1162 kB]
Get:73 http://localhost:3142/debian unstable/main arm64 libtsan2 arm64 14.2.0-11 [2385 kB]
Get:74 http://localhost:3142/debian unstable/main arm64 libstdc++6 arm64 14.2.0-11 [638 kB]
Get:75 http://localhost:3142/debian unstable/main arm64 libubsan1 arm64 14.2.0-11 [1040 kB]
Get:76 http://localhost:3142/debian unstable/main arm64 libhwasan0 arm64 14.2.0-11 [1442 kB]
Get:77 http://localhost:3142/debian unstable/main arm64 libgcc-14-dev arm64 14.2.0-11 [2371 kB]
Get:78 http://localhost:3142/debian unstable/main arm64 libjansson4 arm64 2.14-2+b3 [39.2 kB]
Get:79 http://localhost:3142/debian unstable/main arm64 libjansson-dev arm64 2.14-2+b3 [43.6 kB]
Get:80 http://localhost:3142/debian unstable/main arm64 libstdc++-14-dev arm64 14.2.0-11 [2310 kB]
Get:81 http://localhost:3142/debian unstable/main amd64 tcsh amd64 6.24.13-2 [454 kB]
Get:82 http://localhost:3142/debian unstable/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b1 [85.1 kB]
Get:83 http://localhost:3142/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Processing triggers for libc-bin (2.40-4) ...
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+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) amd64 (x86_64)
Toolchain package versions: binutils_2.43.50.20241221-1 dpkg-dev_1.22.11 g++-14_14.2.0-11 gcc-14_14.2.0-11 libc6-dev_2.40-4 libstdc++-14-dev_14.2.0-11 libstdc++-14-dev-arm64-cross_14.2.0-6cross1 libstdc++6_14.2.0-11 libstdc++6-arm64-cross_14.2.0-6cross1 linux-libc-dev_6.12.6-1
Package versions: apt_2.9.18 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-3 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.5 bash_5.2.37-1 binutils_2.43.50.20241221-1 binutils-aarch64-linux-gnu_2.43.50.20241221-1 binutils-common_2.43.50.20241221-1 binutils-x86-64-linux-gnu_2.43.50.20241221-1 bsdextrautils_2.40.2-12 bsdutils_1:2.40.2-12 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-11 cpp-14-aarch64-linux-gnu_14.2.0-6cross1 cpp-14-x86-64-linux-gnu_14.2.0-11 cpp-aarch64-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-arm64_12.12 dash_0.5.12-9 debconf_1.5.87 debhelper_13.22 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 e2fsprogs_1.47.2~rc1-2 fakeroot_1.36.2-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-11 g++-14-aarch64-linux-gnu_14.2.0-6cross1 g++-14-x86-64-linux-gnu_14.2.0-11 g++-aarch64-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-11 gcc-14-aarch64-linux-gnu_14.2.0-6cross1 gcc-14-aarch64-linux-gnu-base_14.2.0-6cross1 gcc-14-base_14.2.0-11 gcc-14-cross-base_14.2.0-6cross1 gcc-14-x86-64-linux-gnu_14.2.0-11 gcc-aarch64-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.22.5-3 gettext-base_0.22.5-3 gpgv_2.2.45-2 grep_3.11-4 groff-base_1.23.0-6 gzip_1.12-1.2 help2man_1.49.3 hostname_3.25 init-system-helpers_1.67 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.18 libarchive-zip-perl_1.68-1 libasan8_14.2.0-11 libasan8-arm64-cross_14.2.0-6cross1 libatomic1_14.2.0-11 libatomic1-arm64-cross_14.2.0-6cross1 libattr1_1:2.5.2-2 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2 libbinutils_2.43.50.20241221-1 libblkid1_2.40.2-12 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.40-4 libc-dev-bin_2.40-4 libc6_2.40-4 libc6-arm64-cross_2.40-3cross1 libc6-dev_2.40-4 libc6-dev-arm64-cross_2.40-3cross1 libcap-ng0_0.8.5-4 libcap2_1:2.66-5+b1 libcc1-0_14.2.0-11 libcom-err2_1.47.2~rc1-2 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.50.20241221-1 libctf0_2.43.50.20241221-1 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.274 libdebhelper-perl_13.22 libdpkg-perl_1.22.11 libelf1t64_0.192-4 libext2fs2t64_1.47.2~rc1-2 libfakeroot_1.36.2-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-14-dev_14.2.0-11 libgcc-14-dev-arm64-cross_14.2.0-6cross1 libgcc-s1_14.2.0-11 libgcc-s1-arm64-cross_14.2.0-6cross1 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.8-2 libgomp1_14.2.0-11 libgomp1-arm64-cross_14.2.0-6cross1 libgpg-error0_1.51-2 libgprofng0_2.43.50.20241221-1 libhogweed6t64_3.10-1+b1 libhwasan0_14.2.0-11 libhwasan0-arm64-cross_14.2.0-6cross1 libicu72_72.1-5+b1 libidn2-0_2.3.7-2+b1 libisl23_0.27-1 libitm1_14.2.0-11 libitm1-arm64-cross_14.2.0-6cross1 libjansson-dev_2.14-2+b3 libjansson4_2.14-2+b3 liblocale-gettext-perl_1.07-7+b1 liblsan0_14.2.0-11 liblsan0-arm64-cross_14.2.0-6cross1 liblz4-1_1.9.4-3+b1 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmd0_1.1.0-2+b1 libmount1_2.40.2-12 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libnettle8t64_3.10-1+b1 libp11-kit0_0.25.5-2+b1 libpam-modules_1.5.3-7+b1 libpam-modules-bin_1.5.3-7+b1 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7+b1 libpcre2-8-0_10.44-5 libperl5.40_5.40.0-8 libpipeline1_1.5.8-1 libquadmath0_14.2.0-11 libseccomp2_2.5.5-2 libselinux1_3.7-3+b1 libsemanage-common_3.7-2 libsemanage2_3.7-2+b1 libsepol2_3.7-1 libsframe1_2.43.50.20241221-1 libsmartcols1_2.40.2-12 libss2_1.47.2~rc1-2 libssl3t64_3.3.2-2 libstdc++-14-dev_14.2.0-11 libstdc++-14-dev-arm64-cross_14.2.0-6cross1 libstdc++6_14.2.0-11 libstdc++6-arm64-cross_14.2.0-6cross1 libsystemd0_257.1-3 libtasn1-6_4.19.0-3+b3 libtinfo6_6.5-2+b1 libtool_2.4.7-8 libtsan2_14.2.0-11 libtsan2-arm64-cross_14.2.0-6cross1 libubsan1_14.2.0-11 libubsan1-arm64-cross_14.2.0-6cross1 libuchardet0_0.0.8-1+b2 libudev1_257.1-3 libunistring5_1.3-1 libuuid1_2.40.2-12 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libxxhash0_0.8.2-2+b2 libzstd1_1.5.6+dfsg-1+b1 linux-libc-dev_6.12.6-1 linux-libc-dev-arm64-cross_6.11.2-1cross1 login_1:4.16.0-2+really2.40.2-12 login.defs_1:4.16.0-7 logsave_1.47.2~rc1-2 m4_1.4.19-4 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 mount_2.40.2-12 ncurses-base_6.5-2 ncurses-bin_6.5-2+b1 openssl-provider-legacy_3.3.2-2 passwd_1:4.16.0-7 patch_2.7.6-7 perl_5.40.0-8 perl-base_5.40.0-8 perl-modules-5.40_5.40.0-8 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.11-1 tar_1.35+dfsg-3.1 tcsh_6.24.13-2 tzdata_2024b-4 util-linux_2.40.2-12 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

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Hash: SHA512

Format: 3.0 (quilt)
Source: bedops
Binary: bedops, bedops-doc
Architecture: any all
Version: 2.4.41+dfsg-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Olivier Sallou <osallou@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/bedops/bedops
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/bedops
Vcs-Git: https://salsa.debian.org/med-team/bedops.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, libjansson-dev, zlib1g-dev, tcsh
Build-Depends-Indep: sphinx-common, dh-sequence-sphinxdoc, libjs-mathjax, python3-sphinx
Package-List:
 bedops deb science optional arch=any
 bedops-doc deb doc optional arch=all
Checksums-Sha1:
 4f982f219bbf756e2502ca38e8a512b2f5c8c157 13466240 bedops_2.4.41+dfsg.orig.tar.xz
 6b5f466ab1307227c5cdc7263512d87ad85ace65 10900 bedops_2.4.41+dfsg-3.debian.tar.xz
Checksums-Sha256:
 76b239863512daa8e934b1565eee974977de440e4adca0d6f8039d9376a007f4 13466240 bedops_2.4.41+dfsg.orig.tar.xz
 66b20be95d9d5e06d41a433f514f3aad8ada3f4ddbaf6e53472c7a24411f3064 10900 bedops_2.4.41+dfsg-3.debian.tar.xz
Files:
 d2e57e5c93e9d612d7457092e112ffa5 13466240 bedops_2.4.41+dfsg.orig.tar.xz
 3ca9861afade636440c41b7a824de9a8 10900 bedops_2.4.41+dfsg-3.debian.tar.xz
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gpgv: Signature made Tue Dec 17 17:01:06 2024 UTC
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv:                issuer "crusoe@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./bedops_2.4.41+dfsg-3.dsc: no acceptable signature found
dpkg-source: info: extracting bedops in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking bedops_2.4.41+dfsg.orig.tar.xz
dpkg-source: info: unpacking bedops_2.4.41+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying tests_use_installed_binaries.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying use_debian_libs
dpkg-source: info: applying parallel.patch
dpkg-source: info: applying adapt_to_new_sphinx.patch
dpkg-source: info: applying intersphinx

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
OLDPWD=/home/crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SBUILD_CONFIG=/tmp/tmp.CYb261vg4l/sbuild.conf
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-e802579e-8d2d-40b0-860f-a60431b48676
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package bedops
dpkg-buildpackage: info: source version 2.4.41+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
	make -j1 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make clean -f system.mk/Makefile.linux
make[3]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf bin
rm -rf bin
rm -rf bin
rm -rf modules
make -C applications/bed/bedextract/src -f Makefile clean
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/bedextract/src'
rm -rf objects_typical
rm -rf ../bin
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/bedextract/src'
make -C applications/bed/bedmap/src -f Makefile clean
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/bedmap/src'
rm -rf objects_typical
rm -rf ../bin
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/bedmap/src'
make -C applications/bed/bedops/src -f Makefile clean
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/bedops/src'
rm -rf objects_typical
rm -rf ../bin
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/bedops/src'
make -C applications/bed/closestfeats/src -f Makefile clean
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/closestfeats/src'
rm -rf objects_typical
rm -rf ../bin
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/closestfeats/src'
make -C applications/bed/conversion/src -f Makefile clean
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/conversion/src'
rm -rf ../bin
rm -rf objects
rm -rf  *.so *~
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/conversion/src'
make -C applications/bed/sort-bed/src -f Makefile clean
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/sort-bed/src'
rm -rf objects-typical
rm -rf ../bin
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/sort-bed/src'
make -C applications/bed/starch/src -f Makefile clean
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/starch/src'
rm -rf ../lib
rm -f ../lib/libstarch_debug.a
rm -f ../lib/libstarch_gprof.a
rm -rf objects
rm -rf ../bin
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/starch/src'
rm -rf third-party/bzip2-1.0.6
rm -f third-party/bzip2
rm -rf third-party/jansson-2.6
rm -f third-party/jansson
rm -rf third-party/zlib-1.2.7
rm -f third-party/zlib
rm -rf bin
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -rf docs/_build/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
   dh_auto_build -a
	make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make  -f system.mk/Makefile.linux
make[2]: Entering directory '/<<PKGBUILDDIR>>'
#bzcat  | tar -x -C third-party
#cd third-party/jansson-2.6 && ./configure --prefix=/<<PKGBUILDDIR>>/third-party/jansson-2.6 && make && make install && cd /<<PKGBUILDDIR>> && rm -f jansson && ln -sf jansson-2.6 third-party/jansson
#bzcat  | tar -x -C third-party
#cd third-party/bzip2-1.0.6 && make libbz2.a && cd /<<PKGBUILDDIR>> && rm -f bzip2 && ln -sf bzip2-1.0.6 third-party/bzip2
#bzcat  | tar -x -C third-party
#cd third-party/zlib-1.2.7 && ./configure --static && make && cd /<<PKGBUILDDIR>> && rm -f zlib && ln -sf zlib-1.2.7 third-party/zlib
make build -f /<<PKGBUILDDIR>>/system.mk/Makefile.linux
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make -C applications/bed/bedextract/src -f Makefile build
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/bedextract/src'
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’:
../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  560 |                     strncpy(*chr, reinterpret_cast<const char *>( buffer ), strlen(buffer) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here
  560 |                     strncpy(*chr, reinterpret_cast<const char *>( buffer ), strlen(buffer) + 1);
      |                                                                             ~~~~~~^~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’:
../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  964 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here
  964 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                                                                                            ~~~~~~^~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’:
../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
 2464 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here
 2464 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                                                                                            ~~~~~~^~~~~~~~~~~~
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  311 |             strncpy(iter->filename, fn, strlen(fn) + 1);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here
  311 |             strncpy(iter->filename, fn, strlen(fn) + 1);
      |                                         ~~~~~~^~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  330 |                 strncpy(iter->signature, signature, strlen(signature) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here
  330 |                 strncpy(iter->signature, signature, strlen(signature) + 1);
      |                                                     ~~~~~~^~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 2221 |                         strncpy(recTokBuf, token, strlen(token) + 1);
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here
 2221 |                         strncpy(recTokBuf, token, strlen(token) + 1);
      |                                                   ~~~~~~^~~~~~~
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1651 |                 strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:83: note: length computed here
 1651 |                 strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1678 |         strncpy(elemTok2, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:75: note: length computed here
 1678 |         strncpy(elemTok2, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1667 |         strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:75: note: length computed here
 1667 |         strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
 2559 |                                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: note: length computed here
 2559 |                                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p ../bin && aarch64-linux-gnu-g++ -o ../bin/bedextract-typical -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard  -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o  -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ExtractRows.cpp
In file included from ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:32,
                 from ExtractRows.cpp:40:
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   38 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/14/string:49,
                 from /usr/aarch64-linux-gnu/include/c++/14/bits/locale_classes.h:40,
                 from /usr/aarch64-linux-gnu/include/c++/14/bits/ios_base.h:41,
                 from /usr/aarch64-linux-gnu/include/c++/14/ios:44,
                 from /usr/aarch64-linux-gnu/include/c++/14/istream:40,
                 from /usr/aarch64-linux-gnu/include/c++/14/fstream:40,
                 from ExtractRows.cpp:29:
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   52 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   77 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   88 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  101 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  165 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  242 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  254 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  264 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  274 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  284 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  294 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  302 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:44,
                 from ExtractRows.cpp:43:
../../../../interfaces/general-headers/data/starch/starchApi.hpp: In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  541 |                                     std::strncpy(_recTokBuf, _token, strlen(_token) + 1);
      |                                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here
  541 |                                     std::strncpy(_recTokBuf, _token, strlen(_token) + 1);
      |                                                                      ~~~~~~^~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1913 |                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here
 1913 |                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )) + 1);
      |                                                                                                                ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void starch::Starch::setCurrentChromosome(char*)’,
    inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130,
    inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80,
    inlined from ‘Bed::bed_check_iterator<BedType*, Sz>::bed_check_iterator(std::istream&, const std::string&, Ext::PooledMemory<BedType, SZ>&, const std::string&, bool) [with BedType = Bed::BasicCoords<true, true>; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:136:36:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  887 |                 strncpy(currentChromosome, _cC, strlen(_cC) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here
  887 |                 strncpy(currentChromosome, _cC, strlen(_cC) + 1);
      |                                                 ~~~~~~^~~~~
In member function ‘void starch::Starch::setCurrentChromosome(char*)’,
    inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130,
    inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80,
    inlined from ‘Bed::bed_check_iterator<BedType*, Sz> Bed::bed_check_iterator<BedType*, Sz>::operator++(int) [with BedType = Bed::BasicCoords<true, true>; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:292:36,
    inlined from ‘Bed::bed_check_iterator<BedType*, Sz> Bed::bed_check_iterator<BedType*, Sz>::operator++(int) [with BedType = Bed::BasicCoords<true, true>; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:267:24,
    inlined from ‘std::pair<bool, long int> Bed::find_bed_range(FILE*, TargetIter, TargetIter, Op) [with TargetIter = bed_check_iterator<BasicCoords<true, true>*, 16>; Op = Visitors::BedHelpers::Println]’ at ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:102:64:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  887 |                 strncpy(currentChromosome, _cC, strlen(_cC) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here
  887 |                 strncpy(currentChromosome, _cC, strlen(_cC) + 1);
      |                                                 ~~~~~~^~~~~
rm -rf objects_typical
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/bedextract/src'
make -C applications/bed/bedmap/src -f Makefile build
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/bedmap/src'
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’:
../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  560 |                     strncpy(*chr, reinterpret_cast<const char *>( buffer ), strlen(buffer) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here
  560 |                     strncpy(*chr, reinterpret_cast<const char *>( buffer ), strlen(buffer) + 1);
      |                                                                             ~~~~~~^~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’:
../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  964 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here
  964 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                                                                                            ~~~~~~^~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’:
../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
 2464 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here
 2464 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                                                                                            ~~~~~~^~~~~~~~~~~~
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  311 |             strncpy(iter->filename, fn, strlen(fn) + 1);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here
  311 |             strncpy(iter->filename, fn, strlen(fn) + 1);
      |                                         ~~~~~~^~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  330 |                 strncpy(iter->signature, signature, strlen(signature) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here
  330 |                 strncpy(iter->signature, signature, strlen(signature) + 1);
      |                                                     ~~~~~~^~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 2221 |                         strncpy(recTokBuf, token, strlen(token) + 1);
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here
 2221 |                         strncpy(recTokBuf, token, strlen(token) + 1);
      |                                                   ~~~~~~^~~~~~~
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1651 |                 strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:83: note: length computed here
 1651 |                 strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1678 |         strncpy(elemTok2, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:75: note: length computed here
 1678 |         strncpy(elemTok2, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1667 |         strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:75: note: length computed here
 1667 |         strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
 2559 |                                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: note: length computed here
 2559 |                                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p ../bin && aarch64-linux-gnu-g++ -o ../bin/bedmap-typical -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard   -s -Wall -pedantic -O3 -std=c++11  objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o  -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedmap.cpp
In file included from ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:32,
                 from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch_minmem.hpp:36,
                 from ../../../../interfaces/general-headers/algorithm/../../src/algorithm/sweep/WindowSweepImpl.cpp:27,
                 from ../../../../interfaces/general-headers/algorithm/WindowSweep.hpp:91,
                 from ../../../../interfaces/general-headers/algorithm/visitors/bed/BedBaseVisitor.hpp:31,
                 from ../../../../interfaces/general-headers/algorithm/visitors/BedVisitors.hpp:27,
                 from Bedmap.cpp:37:
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   38 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/14/string:49,
                 from /usr/aarch64-linux-gnu/include/c++/14/bits/locale_classes.h:40,
                 from /usr/aarch64-linux-gnu/include/c++/14/bits/ios_base.h:41,
                 from /usr/aarch64-linux-gnu/include/c++/14/ios:44,
                 from /usr/aarch64-linux-gnu/include/c++/14/istream:40,
                 from /usr/aarch64-linux-gnu/include/c++/14/fstream:40,
                 from Bedmap.cpp:29:
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   52 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   77 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   88 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  101 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  165 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  242 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  254 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  264 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  274 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  284 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  294 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  302 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from ../../../../interfaces/general-headers/algorithm/visitors/NumericalVisitors.hpp:32,
                 from ../../../../interfaces/general-headers/algorithm/visitors/BedVisitors.hpp:34:
../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:43:28: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   43 |     struct abs_diff : std::binary_function<T, T, T> {
      |                            ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch_minmem.hpp:39:
../../../../interfaces/general-headers/data/starch/starchApi.hpp: In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  541 |                                     std::strncpy(_recTokBuf, _token, strlen(_token) + 1);
      |                                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here
  541 |                                     std::strncpy(_recTokBuf, _token, strlen(_token) + 1);
      |                                                                      ~~~~~~^~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1913 |                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here
 1913 |                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )) + 1);
      |                                                                                                                ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -rf objects_typical
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/bedmap/src'
make -C applications/bed/bedops/src -f Makefile build
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/bedops/src'
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’:
../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  560 |                     strncpy(*chr, reinterpret_cast<const char *>( buffer ), strlen(buffer) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here
  560 |                     strncpy(*chr, reinterpret_cast<const char *>( buffer ), strlen(buffer) + 1);
      |                                                                             ~~~~~~^~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’:
../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  964 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here
  964 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                                                                                            ~~~~~~^~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’:
../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
 2464 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here
 2464 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                                                                                            ~~~~~~^~~~~~~~~~~~
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  311 |             strncpy(iter->filename, fn, strlen(fn) + 1);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here
  311 |             strncpy(iter->filename, fn, strlen(fn) + 1);
      |                                         ~~~~~~^~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  330 |                 strncpy(iter->signature, signature, strlen(signature) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here
  330 |                 strncpy(iter->signature, signature, strlen(signature) + 1);
      |                                                     ~~~~~~^~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 2221 |                         strncpy(recTokBuf, token, strlen(token) + 1);
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here
 2221 |                         strncpy(recTokBuf, token, strlen(token) + 1);
      |                                                   ~~~~~~^~~~~~~
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1651 |                 strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:83: note: length computed here
 1651 |                 strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1678 |         strncpy(elemTok2, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:75: note: length computed here
 1678 |         strncpy(elemTok2, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1667 |         strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:75: note: length computed here
 1667 |         strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
 2559 |                                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: note: length computed here
 2559 |                                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p ../bin && aarch64-linux-gnu-g++ -o ../bin/bedops-typical -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard   -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o  -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedops.cpp
In file included from ../../../../interfaces/general-headers/algorithm/visitors/helpers/ProcessBedVisitorRow.hpp:33,
                 from Bedops.cpp:40:
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   38 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/14/bits/refwrap.h:39,
                 from /usr/aarch64-linux-gnu/include/c++/14/deque:67,
                 from Bedops.cpp:27:
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   52 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   77 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   88 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  101 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  165 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  242 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  254 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  264 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  274 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  284 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  294 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  302 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch.hpp:42,
                 from Bedops.cpp:41:
../../../../interfaces/general-headers/data/starch/starchApi.hpp: In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  541 |                                     std::strncpy(_recTokBuf, _token, strlen(_token) + 1);
      |                                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here
  541 |                                     std::strncpy(_recTokBuf, _token, strlen(_token) + 1);
      |                                                                      ~~~~~~^~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1913 |                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here
 1913 |                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )) + 1);
      |                                                                                                                ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void starch::Starch::setCurrentChromosome(char*)’,
    inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130,
    inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80,
    inlined from ‘Bed::bed_check_iterator<BedType*, Sz>& Bed::bed_check_iterator<BedType*, Sz>::operator++() [with BedType = Bed::BasicCoords<true, false>; long unsigned int SZ = 512]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:261:36,
    inlined from ‘BedOperations::BedPadReader<IterType>::BedType* BedOperations::BedPadReader<IterType>::ReadLine() [with IterType = Bed::bed_check_iterator<Bed::BasicCoords<true, false>*, 512>]’ at BedPadReader.hpp:140:11,
    inlined from ‘void BedOperations::nextPartitionGroup(BedFiles&, PQueue&) [with BedFiles = std::vector<BedPadReader<Bed::bed_check_iterator<Bed::BasicCoords<true, false>*, 512> >*, std::allocator<BedPadReader<Bed::bed_check_iterator<Bed::BasicCoords<true, false>*, 512> >*> >; PQueue = std::priority_queue<Bed::BasicCoords<true, false>*, std::vector<Bed::BasicCoords<true, false>*, std::allocator<Bed::BasicCoords<true, false>*> >, Bed::InvertGenomicAddressCompare<Bed::BasicCoords<true, false>, Bed::BasicCoords<true, false> > >]’ at Bedops.cpp:1411:39:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  887 |                 strncpy(currentChromosome, _cC, strlen(_cC) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here
  887 |                 strncpy(currentChromosome, _cC, strlen(_cC) + 1);
      |                                                 ~~~~~~^~~~~
rm -rf objects_typical
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/bedops/src'
make -C applications/bed/closestfeats/src -f Makefile build
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/closestfeats/src'
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’:
../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  560 |                     strncpy(*chr, reinterpret_cast<const char *>( buffer ), strlen(buffer) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here
  560 |                     strncpy(*chr, reinterpret_cast<const char *>( buffer ), strlen(buffer) + 1);
      |                                                                             ~~~~~~^~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’:
../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  964 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here
  964 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                                                                                            ~~~~~~^~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’:
../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
 2464 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here
 2464 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                                                                                            ~~~~~~^~~~~~~~~~~~
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  311 |             strncpy(iter->filename, fn, strlen(fn) + 1);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here
  311 |             strncpy(iter->filename, fn, strlen(fn) + 1);
      |                                         ~~~~~~^~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  330 |                 strncpy(iter->signature, signature, strlen(signature) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here
  330 |                 strncpy(iter->signature, signature, strlen(signature) + 1);
      |                                                     ~~~~~~^~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 2221 |                         strncpy(recTokBuf, token, strlen(token) + 1);
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here
 2221 |                         strncpy(recTokBuf, token, strlen(token) + 1);
      |                                                   ~~~~~~^~~~~~~
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1651 |                 strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:83: note: length computed here
 1651 |                 strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1678 |         strncpy(elemTok2, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:75: note: length computed here
 1678 |         strncpy(elemTok2, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1667 |         strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:75: note: length computed here
 1667 |         strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
 2559 |                                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: note: length computed here
 2559 |                                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects_typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p ../bin && aarch64-linux-gnu-g++ -o ../bin/closest-features-typical -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard   -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o  -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ClosestFeature.cpp
In file included from ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:32,
                 from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch.hpp:39,
                 from ClosestFeature.cpp:38:
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   38 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/14/bits/refwrap.h:39,
                 from /usr/aarch64-linux-gnu/include/c++/14/deque:67,
                 from ClosestFeature.cpp:27:
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   52 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   77 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   88 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  101 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  165 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  242 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  254 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  264 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  274 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  284 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  294 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  302 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch.hpp:42:
../../../../interfaces/general-headers/data/starch/starchApi.hpp: In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  541 |                                     std::strncpy(_recTokBuf, _token, strlen(_token) + 1);
      |                                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here
  541 |                                     std::strncpy(_recTokBuf, _token, strlen(_token) + 1);
      |                                                                      ~~~~~~^~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1913 |                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here
 1913 |                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )) + 1);
      |                                                                                                                ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -rf objects_typical
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/closestfeats/src'
make -C applications/bed/conversion/src -f Makefile build
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/conversion/src'
mkdir -p ../bin && aarch64-linux-gnu-gcc -Wall -Wextra -pedantic -std=c99  -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3  -iquote"/<<PKGBUILDDIR>>/applications/bed/conversion/src" -iquote"../../../../interfaces/general-headers" convert2bed.c -o ../bin/convert2bed-typical -lpthread
convert2bed.c: In function ‘c2b_line_convert_rmsk_to_bed_unsorted’:
convert2bed.c:3780:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=]
 3780 |         fprintf(stderr, "Error: Invalid query coordinates at line [%llu]\n", c2b_globals.rmsk->line);
      |                                                                    ~~~^      ~~~~~~~~~~~~~~~~~~~~~~
      |                                                                       |                      |
      |                                                                       long long unsigned int uint64_t {aka long unsigned int}
      |                                                                    %lu
convert2bed.c: In function ‘c2b_line_convert_sam_to_bed_unsorted_with_split_operation’:
convert2bed.c:5017:25: warning: ‘sprintf’ argument 3 overlaps destination object ‘<unknown>’ [-Wrestrict]
 5017 |                         sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
convert2bed.c:5043:21: warning: ‘sprintf’ argument 3 overlaps destination object ‘<unknown>’ [-Wrestrict]
 5043 |                     sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
convert2bed.c:5061:21: warning: ‘sprintf’ argument 3 overlaps destination object ‘<unknown>’ [-Wrestrict]
 5061 |                     sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
convert2bed.c:4950:25: warning: ‘sprintf’ argument 3 overlaps destination object ‘<unknown>’ [-Wrestrict]
 4950 |                         sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
convert2bed.c:4974:21: warning: ‘sprintf’ argument 3 overlaps destination object ‘<unknown>’ [-Wrestrict]
 4974 |                     sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -rf objects
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/conversion/src'
make -C applications/bed/sort-bed/src -f Makefile build
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/sort-bed/src'
mkdir -p objects-typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wextra -pedantic -ansi -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchConstants.c -o objects-typical/starchConstants.o -iquote../../../../interfaces/general-headers
mkdir -p objects-typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wextra -pedantic -ansi -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects-typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers
mkdir -p objects-typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wextra -pedantic -ansi -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchHelpers.c -o objects-typical/starchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’:
../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  560 |                     strncpy(*chr, reinterpret_cast<const char *>( buffer ), strlen(buffer) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here
  560 |                     strncpy(*chr, reinterpret_cast<const char *>( buffer ), strlen(buffer) + 1);
      |                                                                             ~~~~~~^~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’:
../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  964 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here
  964 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                                                                                            ~~~~~~^~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’:
../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
 2464 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here
 2464 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                                                                                            ~~~~~~^~~~~~~~~~~~
mkdir -p objects-typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wextra -pedantic -ansi -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects-typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_JSONMetadataExists(FILE**, const char*)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1089:20: warning: comparison is always true due to limited range of data type [-Wtype-limits]
 1089 |     } while (currC != EOF);
      |                    ^
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1090:63: warning: comparison is always false due to limited range of data type [-Wtype-limits]
 1090 |     if ((nReadBytes == STARCH_LEGACY_METADATA_SIZE) || (currC == EOF)) {
      |                                                               ^
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readJSONMetadata(json_t**, FILE**, const char*, Metadata**, CompressionType*, ArchiveVersion**, char**, char**, uint64_t*, Boolean*, Boolean, Boolean)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1306:24: warning: comparison is always true due to limited range of data type [-Wtype-limits]
 1306 |         } while (currC != EOF);
      |                        ^
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  311 |             strncpy(iter->filename, fn, strlen(fn) + 1);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here
  311 |             strncpy(iter->filename, fn, strlen(fn) + 1);
      |                                         ~~~~~~^~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  330 |                 strncpy(iter->signature, signature, strlen(signature) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here
  330 |                 strncpy(iter->signature, signature, strlen(signature) + 1);
      |                                                     ~~~~~~^~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 2221 |                         strncpy(recTokBuf, token, strlen(token) + 1);
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here
 2221 |                         strncpy(recTokBuf, token, strlen(token) + 1);
      |                                                   ~~~~~~^~~~~~~
mkdir -p objects-typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wextra -pedantic -ansi -O3 -std=c++11  ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects-typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘void starch::UNSTARCH_printMetadataSignature(const unsigned char*)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:2276:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2276 |             static_cast<const size_t>( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:2278:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2278 |             static_cast<const size_t>( mdSha1BufferLength ));
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:2640:33: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2640 |                                 static_cast<const size_t>( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ),
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:2642:33: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2642 |                                 static_cast<const size_t>( STARCH2_MD_FOOTER_SHA1_LENGTH ));
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1651 |                 strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:83: note: length computed here
 1651 |                 strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1678 |         strncpy(elemTok2, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:75: note: length computed here
 1678 |         strncpy(elemTok2, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1667 |         strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:75: note: length computed here
 1667 |         strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
 2559 |                                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: note: length computed here
 2559 |                                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mkdir -p objects-typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wextra -pedantic -ansi -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects-typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers
mkdir -p objects-typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wextra -pedantic -ansi -O3 -std=c++11  ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects-typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers
mkdir -p objects-typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wextra -pedantic -ansi -O3 -std=c++11  SortDetails.cpp -o objects-typical/SortDetails.o -iquote../../../../interfaces/general-headers
SortDetails.cpp: In function ‘ChromBedData* initializeChromBedData(char*, double*)’:
SortDetails.cpp:250:12: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  250 |     strncpy(chrom->chromName, chromBuf, chromBufLen);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SortDetails.cpp:249:25: note: length computed here
  249 |     chromBufLen = strlen(chromBuf); // we know >= 1
      |                   ~~~~~~^~~~~~~~~~
SortDetails.cpp: In function ‘void lexSortBedData(BedData*)’:
SortDetails.cpp:1343:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1343 |             strncpy(chromBuf, beds->chroms[i]->chromName, chromBufLen);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SortDetails.cpp:1342:33: note: length computed here
 1342 |             chromBufLen = strlen(beds->chroms[i]->chromName); // we know >= 1
      |                           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘ChromBedData* initializeChromBedData(char*, double*)’,
    inlined from ‘int processData(const char**, unsigned int, double, char*, bool, bool)’ at SortDetails.cpp:909:59:
SortDetails.cpp:250:12: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  250 |     strncpy(chrom->chromName, chromBuf, chromBufLen);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SortDetails.cpp:249:25: note: length computed here
  249 |     chromBufLen = strlen(chromBuf); // we know >= 1
      |                   ~~~~~~^~~~~~~~~~
mkdir -p objects-typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wextra -pedantic -ansi -O3 -std=c++11  Sort.cpp -o objects-typical/Sort.o -iquote../../../../interfaces/general-headers
mkdir -p objects-typical && aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wextra -pedantic -ansi -O3 -std=c++11  CheckSort.cpp -o objects-typical/CheckSort.o -iquote../../../../interfaces/general-headers
In file included from ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:32,
                 from ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:41,
                 from CheckSort.cpp:28:
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   38 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/14/string:49,
                 from /usr/aarch64-linux-gnu/include/c++/14/bits/locale_classes.h:40,
                 from /usr/aarch64-linux-gnu/include/c++/14/bits/ios_base.h:41,
                 from /usr/aarch64-linux-gnu/include/c++/14/ios:44,
                 from /usr/aarch64-linux-gnu/include/c++/14/istream:40,
                 from /usr/aarch64-linux-gnu/include/c++/14/fstream:40,
                 from CheckSort.cpp:25:
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   52 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   77 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   88 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  101 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  165 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  242 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  254 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  264 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  274 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  284 |     : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                   ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  294 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  302 |      : public std::binary_function<BedType1 const*, BedType2 const*, bool> {
      |                    ^~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:44:
../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::listJSONMetadata(FILE*, FILE*)’:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1226:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 1226 |                                        static_cast<const CompressionType>( getArchiveType() ),
      |                                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1230:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 1230 |                                        static_cast<const Boolean>( getArchiveHeaderFlag() ),
      |                                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1231:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 1231 |                                        static_cast<const Boolean>( getArchiveShowNewlineFlag() ));
      |                                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::extractAllData(const std::string&, FILE*)’:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:2003:51: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2003 |                                                   static_cast<const Boolean>( getArchiveHeaderFlag() )) != 0 ) {
      |                                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:2014:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2014 |                                                  static_cast<const Boolean>( getArchiveHeaderFlag() )) != 0 ) {
      |                                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp: In instantiation of ‘Bed::bed_check_iterator<BedType*, Sz> Bed::bed_check_iterator<BedType*, Sz>::operator++(int) [with BedType = Bed::BasicCoords<true, true>; long unsigned int SZ = 16]’:
CheckSort.cpp:51:28:   required from here
   51 |         pool.release(*start++);
      |                            ^~
../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:268:12: warning: implicitly-declared ‘Bed::bed_check_iterator<Bed::BasicCoords<true, true>*, 16>::bed_check_iterator(const Bed::bed_check_iterator<Bed::BasicCoords<true, true>*, 16>&)’ is deprecated [-Wdeprecated-copy]
  268 |       auto __tmp = *this;
      |            ^~~~~
../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:308:10: note: because ‘Bed::bed_check_iterator<Bed::BasicCoords<true, true>*, 16>’ has user-provided ‘bool Bed::bed_check_iterator<BedType*, Sz>::operator=(const Bed::bed_check_iterator<BedType*, Sz>&) [with BedType = Bed::BasicCoords<true, true>; long unsigned int SZ = 16]’
  308 |     bool operator=(const bed_check_iterator& b);
      |          ^~~~~~~~
../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:295:14: warning: implicitly-declared ‘Bed::bed_check_iterator<Bed::BasicCoords<true, true>*, 16>::bed_check_iterator(const Bed::bed_check_iterator<Bed::BasicCoords<true, true>*, 16>&)’ is deprecated [-Wdeprecated-copy]
  295 |       return __tmp;
      |              ^~~~~
../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:308:10: note: because ‘Bed::bed_check_iterator<Bed::BasicCoords<true, true>*, 16>’ has user-provided ‘bool Bed::bed_check_iterator<BedType*, Sz>::operator=(const Bed::bed_check_iterator<BedType*, Sz>&) [with BedType = Bed::BasicCoords<true, true>; long unsigned int SZ = 16]’
  308 |     bool operator=(const bed_check_iterator& b);
      |          ^~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1913 |                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here
 1913 |                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )) + 1);
      |                                                                                                                ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’,
    inlined from ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(std::string&)’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:634:52,
    inlined from ‘static bool starch::Starch::isStarch(std::string&)’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:698:56,
    inlined from ‘Bed::bed_check_iterator<BedType*, Sz>::bed_check_iterator(std::istream&, const std::string&, Ext::PooledMemory<BedType, SZ>&, const std::string&, bool) [with BedType = Bed::BasicCoords<true, true>; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:92:90:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  541 |                                     std::strncpy(_recTokBuf, _token, strlen(_token) + 1);
      |                                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here
  541 |                                     std::strncpy(_recTokBuf, _token, strlen(_token) + 1);
      |                                                                      ~~~~~~^~~~~~~~
In member function ‘void starch::Starch::setCurrentChromosome(char*)’,
    inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130,
    inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80,
    inlined from ‘Bed::bed_check_iterator<BedType*, Sz>::bed_check_iterator(std::istream&, const std::string&, Ext::PooledMemory<BedType, SZ>&, const std::string&, bool) [with BedType = Bed::BasicCoords<true, true>; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:136:36:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  887 |                 strncpy(currentChromosome, _cC, strlen(_cC) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here
  887 |                 strncpy(currentChromosome, _cC, strlen(_cC) + 1);
      |                                                 ~~~~~~^~~~~
In member function ‘void starch::Starch::setCurrentChromosome(char*)’,
    inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130,
    inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80,
    inlined from ‘Bed::bed_check_iterator<BedType*, Sz> Bed::bed_check_iterator<BedType*, Sz>::operator++(int) [with BedType = Bed::BasicCoords<true, true>; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:292:36,
    inlined from ‘Bed::bed_check_iterator<BedType*, Sz> Bed::bed_check_iterator<BedType*, Sz>::operator++(int) [with BedType = Bed::BasicCoords<true, true>; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:267:24,
    inlined from ‘int checkSort(const char**, unsigned int)’ at CheckSort.cpp:51:28:
../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  887 |                 strncpy(currentChromosome, _cC, strlen(_cC) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here
  887 |                 strncpy(currentChromosome, _cC, strlen(_cC) + 1);
      |                                                 ~~~~~~^~~~~
mkdir -p ../bin && aarch64-linux-gnu-g++ -o ../bin/sort-bed-typical -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard   -s -Wall -Wextra -pedantic -ansi -O3 -std=c++11   -iquote../../../../interfaces/general-headers objects-typical/starchConstants.o objects-typical/starchFileHelpers.o objects-typical/starchHelpers.o objects-typical/starchMetadataHelpers.o objects-typical/unstarchHelpers.o objects-typical/starchSha1Digest.o objects-typical/starchBase64Coding.o objects-typical/SortDetails.o objects-typical/Sort.o objects-typical/CheckSort.o -ljansson -lz -lbz2
mkdir -p ../bin && cp update-sort-bed-slurm.py ../bin/update-sort-bed-slurm-typical
mkdir -p ../bin && cp update-sort-bed-starch-slurm.py ../bin/update-sort-bed-starch-slurm-typical
mkdir -p ../bin && cp update-sort-bed-migrate-candidates.py ../bin/update-sort-bed-migrate-candidates-typical
rm -rf objects-typical
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/sort-bed/src'
make -C applications/bed/starch/src -f Makefile build
make[4]: Entering directory '/<<PKGBUILDDIR>>/applications/bed/starch/src'
mkdir -p objects
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  -c ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -iquote../../../..
mkdir -p objects
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  -c ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘void starch::UNSTARCH_printMetadataSignature(const unsigned char*)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:2276:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2276 |             static_cast<const size_t>( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:2278:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2278 |             static_cast<const size_t>( mdSha1BufferLength ));
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:2640:33: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2640 |                                 static_cast<const size_t>( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ),
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:2642:33: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2642 |                                 static_cast<const size_t>( STARCH2_MD_FOOTER_SHA1_LENGTH ));
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1651 |                 strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:83: note: length computed here
 1651 |                 strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1678 |         strncpy(elemTok2, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:75: note: length computed here
 1678 |         strncpy(elemTok2, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 1667 |         strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:75: note: length computed here
 1667 |         strncpy(elemTok1, reinterpret_cast<const char *>( buffer ), strlen(reinterpret_cast<const char *>( buffer )) + 1);
      |                                                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here
  200 |                         strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’:
../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
 2559 |                                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: note: length computed here
 2559 |                                 strncpy(reinterpret_cast<char *>( zLineBuf ), reinterpret_cast<const char *>( zRemainderBuf ), strlen(reinterpret_cast<const char *>( zRemainderBuf )));
      |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mkdir -p objects
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  -c ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’:
../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  560 |                     strncpy(*chr, reinterpret_cast<const char *>( buffer ), strlen(buffer) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here
  560 |                     strncpy(*chr, reinterpret_cast<const char *>( buffer ), strlen(buffer) + 1);
      |                                                                             ~~~~~~^~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’:
../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  964 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here
  964 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                                                                                            ~~~~~~^~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’:
../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
 2464 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here
 2464 |                     strncat(nonCoordLineBuf, reinterpret_cast<const char *>( chromosome ), strlen(chromosome) + 1);
      |                                                                                            ~~~~~~^~~~~~~~~~~~
mkdir -p objects
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  -c ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_JSONMetadataExists(FILE**, const char*)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1089:20: warning: comparison is always true due to limited range of data type [-Wtype-limits]
 1089 |     } while (currC != EOF);
      |                    ^
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1090:63: warning: comparison is always false due to limited range of data type [-Wtype-limits]
 1090 |     if ((nReadBytes == STARCH_LEGACY_METADATA_SIZE) || (currC == EOF)) {
      |                                                               ^
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readJSONMetadata(json_t**, FILE**, const char*, Metadata**, CompressionType*, ArchiveVersion**, char**, char**, uint64_t*, Boolean*, Boolean, Boolean)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1306:24: warning: comparison is always true due to limited range of data type [-Wtype-limits]
 1306 |         } while (currC != EOF);
      |                        ^
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  311 |             strncpy(iter->filename, fn, strlen(fn) + 1);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here
  311 |             strncpy(iter->filename, fn, strlen(fn) + 1);
      |                                         ~~~~~~^~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  330 |                 strncpy(iter->signature, signature, strlen(signature) + 1);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here
  330 |                 strncpy(iter->signature, signature, strlen(signature) + 1);
      |                                                     ~~~~~~^~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’:
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 2221 |                         strncpy(recTokBuf, token, strlen(token) + 1);
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here
 2221 |                         strncpy(recTokBuf, token, strlen(token) + 1);
      |                                                   ~~~~~~^~~~~~~
mkdir -p objects
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  -c ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../..
mkdir -p objects
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  -c ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -iquote../../../..
mkdir -p objects
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  -c ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -iquote../../../..
mkdir -p ../lib
ar rcs ../lib/libstarch.a objects/starchConstants.o objects/unstarchHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/starchFileHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o
mkdir -p ../bin
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  -c starch.c -o objects/starch.o -iquote../../../../interfaces/general-headers -iquote../../../..
starch.c: In function ‘int main(int, char**)’:
starch.c:106:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  106 |                                        static_cast<const CompressionType>( type ),
      |                                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starch.c:121:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  121 |                                                  static_cast<const CompressionType>( type ),
      |                                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starch.c:123:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  123 |                                                  static_cast<const Boolean>( kStarchFinalizeTransformTrue ),
      |                                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starch.c:146:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  146 |                                        static_cast<const CompressionType>( type ),
      |                                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starch.c:161:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  161 |                                                  static_cast<const CompressionType>( type ),
      |                                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starch.c:163:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  163 |                                                  static_cast<const Boolean>( kStarchFinalizeTransformTrue ),
      |                                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starch.c:191:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  191 |                                    static_cast<const CompressionType>( type ),
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starch.c:194:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  194 |                                    static_cast<const Boolean>( bedGeneratePerChrSignatureFlag ),
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starch.c:195:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  195 |                                    static_cast<const Boolean>( bedHeaderFlag ),
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starch.c:196:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  196 |                                    static_cast<const Boolean>( bedReportProgressFlag ),
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starch.c:197:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  197 |                                    static_cast<const LineCountType>( bedReportProgressN )) != STARCH_EXIT_SUCCESS)
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  objects/starch.o -o ../bin/starch-typical ../lib/libstarch.a -ljansson -lz -lbz2
mkdir -p ../bin
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  -c unstarch.c -o objects/unstarch.o -iquote../../../../interfaces/general-headers -iquote../../../..
unstarch.c: In function ‘int main(int, char**)’:
unstarch.c:401:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  401 |                                                           static_cast<const unsigned long long>( metadataOffset ),
      |                                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unstarch.c:402:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  402 |                                                           static_cast<const Boolean>( headerFlag )) != 0) {
      |                                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unstarch.c:422:58: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  422 |                                                          static_cast<const unsigned long long>( metadataOffset ),
      |                                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unstarch.c:423:58: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  423 |                                                          static_cast<const Boolean>( headerFlag )) != 0) {
      |                                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unstarch.c:452:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  452 |                                                           static_cast<const unsigned long long>( sizeof(starchRevision2HeaderBytes) ),
      |                                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unstarch.c:453:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  453 |                                                           static_cast<const Boolean>( headerFlag )) != 0) {
      |                                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unstarch.c:473:58: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  473 |                                                          static_cast<const unsigned long long>( sizeof(starchRevision2HeaderBytes) ),
      |                                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unstarch.c:474:58: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  474 |                                                          static_cast<const Boolean>( headerFlag )) != 0) {
      |                                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unstarch.c:567:39: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  567 |         UNSTARCH_printCompressionType(static_cast<const CompressionType>( type ));
      |                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unstarch.c:798:78: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  798 |                                                                              static_cast<const unsigned long long>( sizeof(starchRevision2HeaderBytes) ),
      |                                                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unstarch.c:809:82: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  809 |                                                                                  static_cast<const unsigned long long>( sizeof(starchRevision2HeaderBytes) ),
      |                                                                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unstarch.c: In function ‘void starch::UNSTARCH_printMetadataSha1Signature(unsigned char*)’:
unstarch.c:1334:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 1334 |             static_cast<const size_t>( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unstarch.c:1336:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 1336 |             static_cast<const size_t>( sha1BufferLength ));
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  objects/unstarch.o -o ../bin/unstarch-typical ../lib/libstarch.a -ljansson -lz -lbz2
mkdir -p ../bin
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  -c starchcat.c -o objects/starchcat.o -iquote../../../../interfaces/general-headers -iquote../../../..
In file included from /usr/aarch64-linux-gnu/include/c++/14/cassert:44,
                 from starchcat.c:33:
starchcat.c: In function ‘int main(int, char**)’:
starchcat.c:136:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  136 |             assert( STARCHCAT_allocMetadataRecords      ( &mdRecords, static_cast<const unsigned int>( numRecords ) ) );
      |                                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:137:75: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  137 |             assert( STARCHCAT_allocMetadataJSONObjects  ( &metadataJSONs, static_cast<const unsigned int>( numRecords ) ) );
      |                                                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:138:87: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  138 |             assert( STARCHCAT_buildMetadataRecords      ( &metadataJSONs, &mdRecords, static_cast<const unsigned int>( firstArgc ), static_cast<const int>( argc ), const_cast<const char **>( argv ) ) );
      |                                                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:138:133: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  138 |             assert( STARCHCAT_buildMetadataRecords      ( &metadataJSONs, &mdRecords, static_cast<const unsigned int>( firstArgc ), static_cast<const int>( argc ), const_cast<const char **>( argv ) ) );
      |                                                                                                                                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:139:75: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  139 |             assert( STARCHCAT_checkMetadataJSONVersions ( &metadataJSONs, static_cast<const unsigned int>( numRecords ) ) );
      |                                                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:140:145: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  140 |             assert( STARCHCAT_buildUniqueChromosomeList ( &chromosomes, &numChromosomes, reinterpret_cast<const MetadataRecord *>( mdRecords ), static_cast<const unsigned int>( numRecords ) ) );
      |                                                                                                                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:141:69: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  141 |             assert( STARCHCAT_allocChromosomeSummary    ( &summary, static_cast<const unsigned int>( numChromosomes ) ) );
      |                                                                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:142:124: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  142 |             assert( STARCHCAT_buildChromosomeSummary    ( &summary, reinterpret_cast<const MetadataRecord *>( mdRecords ), static_cast<const unsigned int>( numRecords ), const_cast<const char **>( chromosomes ), static_cast<const unsigned int>( numChromosomes ) ) );
      |                                                                                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:142:213: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  142 |             assert( STARCHCAT_buildChromosomeSummary    ( &summary, reinterpret_cast<const MetadataRecord *>( mdRecords ), static_cast<const unsigned int>( numRecords ), const_cast<const char **>( chromosomes ), static_cast<const unsigned int>( numChromosomes ) ) );
      |                                                                                                                                                                                                                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:143:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  143 |             assert( STARCHCAT_allocChromosomeSummaries  ( &summaries, static_cast<const unsigned int>( numChromosomes ) ) );
      |                                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:144:127: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  144 |             assert( STARCHCAT_buildChromosomeSummaries  ( &summaries, reinterpret_cast<const ChromosomeSummary *>( summary ), static_cast<const unsigned int>( numChromosomes ) ) );
      |                                                                                                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:164:61: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  164 |                                                             static_cast<const CompressionType>( outputType ),
      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:178:61: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  178 |                                                             static_cast<const CompressionType>( outputType ),
      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:223:60: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  223 |         assert( STARCHCAT_freeMetadataRecords( &mdRecords, static_cast<const unsigned int>( numRecords ) ) );
      |                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:233:68: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  233 |         assert (STARCHCAT_freeMetadataJSONObjects( &metadataJSONs, static_cast<const unsigned int>( numRecords ) ) );
      |                                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c: In function ‘int starch::STARCHCAT2_rewriteInputRecordToOutput(Metadata**, const char*, CompressionType, const char*, const MetadataRecord*, size_t*, Boolean, Boolean, Bed::LineCountType)’:
starchcat.c:1338:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 1338 |                                 UNSTARCH_reverseTransformCoordinates( static_cast<const LineCountType>( t_lineIdx ),
      |                                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:1806:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 1806 |                                 UNSTARCH_reverseTransformCoordinates( static_cast<const LineCountType>( t_lineIdx ),
      |                                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c: In function ‘int starch::STARCHCAT_rewriteInputRecordToOutput(Metadata**, const char*, CompressionType, const char*, const MetadataRecord*)’:
starchcat.c:2450:25: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2450 |                         static_cast<const uint64_t>( inRec->mdOffset ),
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:2451:25: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2451 |                         static_cast<const Boolean>( inRec->hFlag )) != 0 ) {
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:2471:28: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2471 |                            static_cast<const uint64_t>( inRec->mdOffset ),
      |                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:2472:28: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2472 |                            static_cast<const Boolean>( inRec->hFlag )) != 0 ) {
      |                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:2509:23: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2509 |                       static_cast<const CompressionType>( outType ),
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:2511:23: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 2511 |                       static_cast<const Boolean>( kStarchFinalizeTransformFalse ),
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c: In function ‘int starch::STARCHCAT2_mergeInputRecordsToOutput(const char*, Metadata**, const char*, CompressionType, const ChromosomeSummary*, size_t*)’:
starchcat.c:3152:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 3152 |                 if (STARCHCAT2_setupBzip2InputStream(static_cast<const size_t>( inRecIdx ),
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:3316:69: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 3316 |                                                                     static_cast<const size_t>( summary->numRecords ),
      |                                                                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:3455:77: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 3455 |                                                                             static_cast<const Boolean>( flushZStreamFlag ),
      |                                                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c: In function ‘int starch::STARCHCAT_mergeInputRecordsToOutput(Metadata**, const char*, CompressionType, const ChromosomeSummary*)’:
starchcat.c:4265:43: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 4265 |                                           static_cast<const CompressionType>( outType ),
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:4267:43: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 4267 |                                           static_cast<const Boolean>( kStarchFinalizeTransformFalse ),
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c: In function ‘int starch::STARCHCAT_mergeChromosomeStreams(const ChromosomeSummaries*, CompressionType, const char*)’:
starchcat.c:4402:60: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 4402 |                                                            static_cast<const CompressionType>( outputType ),
      |                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:4420:63: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 4420 |                                                               static_cast<const CompressionType>( outputType ),
      |                                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:4447:57: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 4447 |                                                         static_cast<const CompressionType>( outputType ),
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:4479:39: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 4479 |                                       static_cast<const Boolean>( hFlag ),
      |                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c: In function ‘int starch::STARCHCAT_freeChromosomeSummaries(ChromosomeSummaries**)’:
starchcat.c:4541:62: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 4541 |     STARCHCAT_freeChromosomeSummary( &((*chrSums)->summary), static_cast<const unsigned int>( (*chrSums)->numChromosomes ));
      |                                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c: In function ‘int starch::STARCHCAT2_mergeChromosomeStreams(const ChromosomeSummaries*, CompressionType, const char*, size_t*, Boolean, Boolean, Bed::LineCountType)’:
starchcat.c:5902:61: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 5902 |                                                             static_cast<const CompressionType>( outputType ),
      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:5929:64: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 5929 |                                                                static_cast<const CompressionType>( outputType ),
      |                                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:5952:64: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 5952 |                                                                static_cast<const CompressionType>( outputType ),
      |                                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:5990:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 5990 |                                                           static_cast<const CompressionType>( outputType ),
      |                                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:6025:38: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 6025 |                                      static_cast<const Boolean>( hFlag ),
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:6053:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 6053 |             static_cast<const size_t>( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:6055:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 6055 |             static_cast<const size_t>( STARCH2_MD_FOOTER_SHA1_LENGTH ));
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c: In function ‘int starch::STARCHCAT2_fillExtractionBufferFromBzip2Stream(Boolean*, char*, char*, size_t*, BZFILE**, size_t*, char*, size_t*, TransformState*)’:
starchcat.c:6719:55: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 6719 |                 UNSTARCH_reverseTransformCoordinates( static_cast<const LineCountType>( *t_lineIdxPtr ),
      |                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c: In function ‘int starch::STARCHCAT2_fillExtractionBufferFromGzipStream(Boolean*, FILE**, char*, char*, size_t*, z_stream*, size_t*, char**, size_t*, TransformState*)’:
starchcat.c:7060:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
 7060 |                     UNSTARCH_reverseTransformCoordinates( static_cast<const LineCountType>( *t_lineIdxPtr ),
      |                                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c: In function ‘int starch::STARCHCAT2_transformCompressionBuffer(const char*, char*, TransformState*)’:
starchcat.c:7428:25: warning: the address of ‘starch::transformState::r_chromosome’ will never be NULL [-Waddress]
 7428 |     if ((!retransState->r_chromosome) || (strlen(retransState->r_chromosome) == 0))
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from starchcat.c:50:
starchcat.h:107:30: note: ‘starch::transformState::r_chromosome’ declared here
  107 |     char                     r_chromosome[TOKEN_CHR_MAX_LENGTH];
      |                              ^~~~~~~~~~~~
starchcat.c: In function ‘int starch::STARCHCAT2_mergeInputRecordsToOutput(const char*, Metadata**, const char*, CompressionType, const ChromosomeSummary*, size_t*)’:
starchcat.c:3123:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 3123 |         strncpy(transformStates[inRecIdx]->t_currentChromosome, inChr, strlen(inChr) + 1);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchcat.c:3123:78: note: length computed here
 3123 |         strncpy(transformStates[inRecIdx]->t_currentChromosome, inChr, strlen(inChr) + 1);
      |                                                                        ~~~~~~^~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  objects/starchcat.o -o ../bin/starchcat-typical ../lib/libstarch.a -ljansson -lz -lbz2
mkdir -p ../bin
cp starchcluster_gnuParallel.tcsh ../bin/starchcluster_gnuParallel-typical
mkdir -p ../bin
cp starchcluster_sge.tcsh ../bin/starchcluster_sge-typical
mkdir -p ../bin
cp starchcluster_slurm.tcsh ../bin/starchcluster_slurm-typical
mkdir -p ../bin
cp starch-diff.py ../bin/starch-diff-typical
mkdir -p ../bin
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  -c starchstrip.c -o objects/starchstrip.o -iquote../../../../interfaces/general-headers -iquote../../../..
starchstrip.c: In function ‘void starch::STARCHSTRIP_write_updated_metadata(FILE*)’:
starchstrip.c:124:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  124 |             static_cast<const size_t>( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
starchstrip.c:126:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers]
  126 |             static_cast<const size_t>( STARCH2_MD_FOOTER_SHA1_LENGTH ));
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11  -s  objects/starchstrip.o -o ../bin/starchstrip-typical ../lib/libstarch.a -ljansson -lz -lbz2
rm -rf objects
make[4]: Leaving directory '/<<PKGBUILDDIR>>/applications/bed/starch/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck"
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install -a
	make -j1 install DESTDIR=/<<BUILDDIR>>/bedops-2.4.41\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p bin
cp applications/bed/conversion/src/wrappers/bam2bed applications/bed/conversion/src/wrappers/bam2bed_gnuParallel applications/bed/conversion/src/wrappers/bam2bed_sge applications/bed/conversion/src/wrappers/bam2bed_slurm applications/bed/conversion/src/wrappers/bam2starch applications/bed/conversion/src/wrappers/bam2starch_gnuParallel applications/bed/conversion/src/wrappers/bam2starch_sge applications/bed/conversion/src/wrappers/bam2starch_slurm applications/bed/conversion/src/wrappers/gff2bed applications/bed/conversion/src/wrappers/gff2starch applications/bed/conversion/src/wrappers/gtf2bed applications/bed/conversion/src/wrappers/gtf2starch applications/bed/conversion/src/wrappers/gvf2bed applications/bed/conversion/src/wrappers/gvf2starch applications/bed/conversion/src/wrappers/psl2bed applications/bed/conversion/src/wrappers/psl2starch applications/bed/conversion/src/wrappers/rmsk2bed applications/bed/conversion/src/wrappers/rmsk2starch applications/bed/conversion/src/wrappers/sam2bed applications/bed/conversion/src/wrappers/sam2starch applications/bed/conversion/src/wrappers/vcf2bed applications/bed/conversion/src/wrappers/vcf2starch applications/bed/conversion/src/wrappers/wig2bed applications/bed/conversion/src/wrappers/wig2starch bin
cp applications/bed/starch/bin/starchcluster_sge-typical bin/starchcluster_sge
cp applications/bed/starch/bin/starchcluster_gnuParallel-typical bin/starchcluster_gnuParallel
cp applications/bed/starch/bin/starchcluster_slurm-typical bin/starchcluster_slurm
cp applications/bed/starch/bin/starch-diff-typical bin/starch-diff
cp applications/bed/sort-bed/bin/sort-bed-typical bin/sort-bed
cp applications/bed/sort-bed/bin/update-sort-bed-slurm-typical bin/update-sort-bed-slurm
cp applications/bed/sort-bed/bin/update-sort-bed-starch-slurm-typical bin/update-sort-bed-starch-slurm
cp applications/bed/sort-bed/bin/update-sort-bed-migrate-candidates-typical bin/update-sort-bed-migrate-candidates
cp applications/bed/bedops/bin/bedops-typical bin/bedops
cp applications/bed/closestfeats/bin/closest-features-typical bin/closest-features
cp applications/bed/bedmap/bin/bedmap-typical bin/bedmap
cp applications/bed/bedextract/bin/bedextract-typical bin/bedextract
cp applications/bed/starch/bin/starch-typical bin/starch
cp applications/bed/starch/bin/unstarch-typical bin/unstarch
cp applications/bed/starch/bin/starchcat-typical bin/starchcat
cp applications/bed/starch/bin/starchstrip-typical bin/starchstrip
cp applications/bed/conversion/bin/convert2bed-typical bin/convert2bed
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_install-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -a
mv bin/starch bin/bedops-starch
mkdir -p debian/bedops/usr/bin/
cp bin/* debian/bedops/usr/bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   debian/rules override_dh_installman-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd bin && for f in * ; do help2man --no-discard-stderr --version-string="2.4.41+dfsg" -o $f.1 ./$f; done
help2man: can't get `--help' info from ./starch-diff
help2man: can't get `--help' info from ./update-sort-bed-migrate-candidates
help2man: can't get `--help' info from ./update-sort-bed-slurm
help2man: can't get `--help' info from ./update-sort-bed-starch-slurm
dh_installman -a
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   debian/rules override_dh_dwz
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# Work around: dwz: Too few files for multifile optimization
echo "Do not run dh_dwz"
Do not run dh_dwz
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'bedops' in '../bedops_2.4.41+dfsg-3_arm64.deb'.
dpkg-deb: building package 'bedops-dbgsym' in '../bedops-dbgsym_2.4.41+dfsg-3_arm64.deb'.
 dpkg-genbuildinfo --build=any -O../bedops_2.4.41+dfsg-3_arm64.buildinfo
 dpkg-genchanges --build=any -O../bedops_2.4.41+dfsg-3_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-12-22T09:51:07Z

+------------------------------------------------------------------------------+
| Finished Timed Build Commands                                                |
+------------------------------------------------------------------------------+


rm -Rf /<<PKGBUILDDIR>>/
-----------------------------------------------


I: Finished running 'rm -Rf /<<PKGBUILDDIR>>/'.

Finished processing commands.
--------------------------------------------------------------------------------

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


bedops_2.4.41+dfsg-3_arm64.changes:
-----------------------------------

Format: 1.8
Date: Tue, 17 Dec 2024 17:40:45 +0100
Source: bedops
Binary: bedops bedops-dbgsym
Built-For-Profiles: cross nocheck
Architecture: arm64
Version: 2.4.41+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
 bedops     - high-performance genomic feature operations
Closes: 1090091
Changes:
 bedops (2.4.41+dfsg-3) unstable; urgency=medium
 .
   * Team upload.
   * Docs: added patch removing the use of intersphinx, it is unneeded
     and had the wrong layout. Closes: #1090091
   * d/control: need tcsh for the man pages
   * Standards-Version: 4.7.0 (routine-update)
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Files:
 728c51f2cb591aef5c152ec346f50cb0 75492 debug optional bedops-dbgsym_2.4.41+dfsg-3_arm64.deb
 5e6d1a4b10d147cddf8c2628b988e0bf 5175 science optional bedops_2.4.41+dfsg-3_arm64.buildinfo
 0cb58b50e83f386b43d0400eef139e3e 1336132 science optional bedops_2.4.41+dfsg-3_arm64.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: bedops
Binary: bedops bedops-dbgsym
Architecture: arm64
Version: 2.4.41+dfsg-3
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Checksums-Sha256:
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Sun, 22 Dec 2024 09:51:07 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
Installed-Build-Depends:
 autoconf (= 2.72-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.22.5-3),
 autotools-dev (= 20220109.1),
 base-files (= 13.6),
 base-passwd (= 3.6.5),
 bash (= 5.2.37-1),
 binutils (= 2.43.50.20241221-1),
 binutils-common (= 2.43.50.20241221-1),
 binutils-x86-64-linux-gnu (= 2.43.50.20241221-1),
 bsdextrautils (= 2.40.2-12),
 bsdutils (= 1:2.40.2-12),
 build-essential (= 12.12),
 bzip2 (= 1.0.8-6),
 coreutils (= 9.5-1+b1),
 cpp (= 4:14.2.0-1),
 cpp-14 (= 14.2.0-11),
 cpp-14-x86-64-linux-gnu (= 14.2.0-11),
 cpp-x86-64-linux-gnu (= 4:14.2.0-1),
 dash (= 0.5.12-9),
 debconf (= 1.5.87),
 debhelper (= 13.22),
 debianutils (= 5.21),
 dh-autoreconf (= 20),
 dh-strip-nondeterminism (= 1.14.0-1),
 diffutils (= 1:3.10-1),
 dpkg (= 1.22.11),
 dpkg-dev (= 1.22.11),
 dwz (= 0.15-1+b1),
 file (= 1:5.45-3+b1),
 findutils (= 4.10.0-3),
 g++ (= 4:14.2.0-1),
 g++-14 (= 14.2.0-11),
 g++-14-x86-64-linux-gnu (= 14.2.0-11),
 g++-x86-64-linux-gnu (= 4:14.2.0-1),
 gcc (= 4:14.2.0-1),
 gcc-14 (= 14.2.0-11),
 gcc-14-base (= 14.2.0-11),
 gcc-14-x86-64-linux-gnu (= 14.2.0-11),
 gcc-x86-64-linux-gnu (= 4:14.2.0-1),
 gettext (= 0.22.5-3),
 gettext-base (= 0.22.5-3),
 grep (= 3.11-4),
 groff-base (= 1.23.0-6),
 gzip (= 1.12-1.2),
 help2man (= 1.49.3),
 hostname (= 3.25),
 init-system-helpers (= 1.67),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.2-2+b1),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 14.2.0-11),
 libatomic1 (= 14.2.0-11),
 libattr1 (= 1:2.5.2-2),
 libaudit-common (= 1:4.0.2-2),
 libaudit1 (= 1:4.0.2-2),
 libbinutils (= 2.43.50.20241221-1),
 libblkid1 (= 2.40.2-12),
 libbz2-1.0 (= 1.0.8-6),
 libbz2-dev (= 1.0.8-6),
 libc-bin (= 2.40-4),
 libc-dev-bin (= 2.40-4),
 libc6 (= 2.40-4),
 libc6-dev (= 2.40-4),
 libcap-ng0 (= 0.8.5-4),
 libcap2 (= 1:2.66-5+b1),
 libcc1-0 (= 14.2.0-11),
 libcrypt-dev (= 1:4.4.36-5),
 libcrypt1 (= 1:4.4.36-5),
 libctf-nobfd0 (= 2.43.50.20241221-1),
 libctf0 (= 2.43.50.20241221-1),
 libdb5.3t64 (= 5.3.28+dfsg2-9),
 libdebconfclient0 (= 0.274),
 libdebhelper-perl (= 13.22),
 libdpkg-perl (= 1.22.11),
 libelf1t64 (= 0.192-4),
 libfile-stripnondeterminism-perl (= 1.14.0-1),
 libgcc-14-dev (= 14.2.0-11),
 libgcc-s1 (= 14.2.0-11),
 libgdbm-compat4t64 (= 1.24-2),
 libgdbm6t64 (= 1.24-2),
 libgmp10 (= 2:6.3.0+dfsg-3),
 libgomp1 (= 14.2.0-11),
 libgprofng0 (= 2.43.50.20241221-1),
 libhwasan0 (= 14.2.0-11),
 libicu72 (= 72.1-5+b1),
 libisl23 (= 0.27-1),
 libitm1 (= 14.2.0-11),
 libjansson-dev (= 2.14-2+b3),
 libjansson4 (= 2.14-2+b3),
 liblocale-gettext-perl (= 1.07-7+b1),
 liblsan0 (= 14.2.0-11),
 liblzma5 (= 5.6.3-1+b1),
 libmagic-mgc (= 1:5.45-3+b1),
 libmagic1t64 (= 1:5.45-3+b1),
 libmd0 (= 1.1.0-2+b1),
 libmount1 (= 2.40.2-12),
 libmpc3 (= 1.3.1-1+b3),
 libmpfr6 (= 4.2.1-1+b2),
 libpam-modules (= 1.5.3-7+b1),
 libpam-modules-bin (= 1.5.3-7+b1),
 libpam-runtime (= 1.5.3-7),
 libpam0g (= 1.5.3-7+b1),
 libpcre2-8-0 (= 10.44-5),
 libperl5.40 (= 5.40.0-8),
 libpipeline1 (= 1.5.8-1),
 libquadmath0 (= 14.2.0-11),
 libseccomp2 (= 2.5.5-2),
 libselinux1 (= 3.7-3+b1),
 libsframe1 (= 2.43.50.20241221-1),
 libsmartcols1 (= 2.40.2-12),
 libssl3t64 (= 3.3.2-2),
 libstdc++-14-dev (= 14.2.0-11),
 libstdc++6 (= 14.2.0-11),
 libsystemd0 (= 257.1-3),
 libtinfo6 (= 6.5-2+b1),
 libtool (= 2.4.7-8),
 libtsan2 (= 14.2.0-11),
 libubsan1 (= 14.2.0-11),
 libuchardet0 (= 0.0.8-1+b2),
 libudev1 (= 257.1-3),
 libunistring5 (= 1.3-1),
 libuuid1 (= 2.40.2-12),
 libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1),
 libzstd1 (= 1.5.6+dfsg-1+b1),
 linux-libc-dev (= 6.12.6-1),
 m4 (= 1.4.19-4),
 make (= 4.4.1-1),
 man-db (= 2.13.0-1),
 mawk (= 1.3.4.20240905-1),
 ncurses-base (= 6.5-2),
 ncurses-bin (= 6.5-2+b1),
 openssl-provider-legacy (= 3.3.2-2),
 patch (= 2.7.6-7),
 perl (= 5.40.0-8),
 perl-base (= 5.40.0-8),
 perl-modules-5.40 (= 5.40.0-8),
 po-debconf (= 1.0.21+nmu1),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.24),
 sysvinit-utils (= 3.11-1),
 tar (= 1.35+dfsg-3.1),
 tcsh (= 6.24.13-2),
 util-linux (= 2.40.2-12),
 xz-utils (= 5.6.3-1+b1),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1),
 zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 SOURCE_DATE_EPOCH="1734453645"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


bedops-dbgsym_2.4.41+dfsg-3_arm64.deb
-------------------------------------

 new Debian package, version 2.0.
 size 75492 bytes: control archive=536 bytes.
     378 bytes,    12 lines      control
     106 bytes,     1 lines      md5sums
 Package: bedops-dbgsym
 Source: bedops
 Version: 2.4.41+dfsg-3
 Auto-Built-Package: debug-symbols
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 208
 Depends: bedops (= 2.4.41+dfsg-3)
 Section: debug
 Priority: optional
 Description: debug symbols for bedops
 Build-Ids: db6f9812e6af60bad94417ec52f6f8c13a624ebc

drwxr-xr-x root/root         0 2024-12-17 16:40 ./
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/lib/
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/lib/debug/.build-id/db/
-rw-r--r-- root/root    201776 2024-12-17 16:40 ./usr/lib/debug/.build-id/db/6f9812e6af60bad94417ec52f6f8c13a624ebc.debug
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/share/
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-12-17 16:40 ./usr/share/doc/bedops-dbgsym -> bedops


bedops_2.4.41+dfsg-3_arm64.deb
------------------------------

 new Debian package, version 2.0.
 size 1336132 bytes: control archive=6264 bytes.
     733 bytes,    15 lines      control
   21842 bytes,   241 lines      md5sums
 Package: bedops
 Version: 2.4.41+dfsg-3
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 9280
 Depends: libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libjansson4 (>= 2.14), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4), python3, tcsh
 Section: science
 Priority: optional
 Homepage: https://github.com/bedops/bedops
 Description: high-performance genomic feature operations
  BEDOPS is a suite of tools to address common questions raised in genomic
  studies, mostly with regard to overlap and proximity relationships between
  data sets.
  It aims to be scalable and flexible, facilitating the efficient and accurate
  analysis and management of large-scale genomic data.

drwxr-xr-x root/root         0 2024-12-17 16:40 ./
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/bin/
-rwxr-xr-x root/root      4711 2024-12-17 16:40 ./usr/bin/bam2bed
-rwxr-xr-x root/root      4501 2024-12-17 16:40 ./usr/bin/bam2bed_gnuParallel
-rwxr-xr-x root/root      5022 2024-12-17 16:40 ./usr/bin/bam2bed_sge
-rwxr-xr-x root/root      5021 2024-12-17 16:40 ./usr/bin/bam2bed_slurm
-rwxr-xr-x root/root      5842 2024-12-17 16:40 ./usr/bin/bam2starch
-rwxr-xr-x root/root      4507 2024-12-17 16:40 ./usr/bin/bam2starch_gnuParallel
-rwxr-xr-x root/root      5076 2024-12-17 16:40 ./usr/bin/bam2starch_sge
-rwxr-xr-x root/root      5014 2024-12-17 16:40 ./usr/bin/bam2starch_slurm
-rwxr-xr-x root/root    200144 2024-12-17 16:40 ./usr/bin/bedextract
-rwxr-xr-x root/root   7147112 2024-12-17 16:40 ./usr/bin/bedmap
-rwxr-xr-x root/root    396848 2024-12-17 16:40 ./usr/bin/bedops
-rwxr-xr-x root/root    134128 2024-12-17 16:40 ./usr/bin/bedops-starch
-rwxr-xr-x root/root    265704 2024-12-17 16:40 ./usr/bin/closest-features
-rwxr-xr-x root/root    135120 2024-12-17 16:40 ./usr/bin/convert2bed
-rwxr-xr-x root/root      3773 2024-12-17 16:40 ./usr/bin/gff2bed
-rwxr-xr-x root/root      4904 2024-12-17 16:40 ./usr/bin/gff2starch
-rwxr-xr-x root/root      4061 2024-12-17 16:40 ./usr/bin/gtf2bed
-rwxr-xr-x root/root      5195 2024-12-17 16:40 ./usr/bin/gtf2starch
-rwxr-xr-x root/root      3773 2024-12-17 16:40 ./usr/bin/gvf2bed
-rwxr-xr-x root/root      4904 2024-12-17 16:40 ./usr/bin/gvf2starch
-rwxr-xr-x root/root      3976 2024-12-17 16:40 ./usr/bin/psl2bed
-rwxr-xr-x root/root      5107 2024-12-17 16:40 ./usr/bin/psl2starch
-rwxr-xr-x root/root      3776 2024-12-17 16:40 ./usr/bin/rmsk2bed
-rwxr-xr-x root/root      4907 2024-12-17 16:40 ./usr/bin/rmsk2starch
-rwxr-xr-x root/root      4711 2024-12-17 16:40 ./usr/bin/sam2bed
-rwxr-xr-x root/root      5842 2024-12-17 16:40 ./usr/bin/sam2starch
-rwxr-xr-x root/root    265704 2024-12-17 16:40 ./usr/bin/sort-bed
-rwxr-xr-x root/root     10163 2024-12-17 16:40 ./usr/bin/starch-diff
-rwxr-xr-x root/root    199696 2024-12-17 16:40 ./usr/bin/starchcat
-rwxr-xr-x root/root      4299 2024-12-17 16:40 ./usr/bin/starchcluster_gnuParallel
-rwxr-xr-x root/root      4810 2024-12-17 16:40 ./usr/bin/starchcluster_sge
-rwxr-xr-x root/root      4716 2024-12-17 16:40 ./usr/bin/starchcluster_slurm
-rwxr-xr-x root/root    134000 2024-12-17 16:40 ./usr/bin/starchstrip
-rwxr-xr-x root/root    133872 2024-12-17 16:40 ./usr/bin/unstarch
-rwxr-xr-x root/root     32686 2024-12-17 16:40 ./usr/bin/update-sort-bed-migrate-candidates
-rwxr-xr-x root/root     20701 2024-12-17 16:40 ./usr/bin/update-sort-bed-slurm
-rwxr-xr-x root/root     22682 2024-12-17 16:40 ./usr/bin/update-sort-bed-starch-slurm
-rwxr-xr-x root/root      4675 2024-12-17 16:40 ./usr/bin/vcf2bed
-rwxr-xr-x root/root      5806 2024-12-17 16:40 ./usr/bin/vcf2starch
-rwxr-xr-x root/root      4598 2024-12-17 16:40 ./usr/bin/wig2bed
-rwxr-xr-x root/root      5729 2024-12-17 16:40 ./usr/bin/wig2starch
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/share/
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/share/doc/bedops/
-rw-r--r-- root/root       267 2024-12-16 14:15 ./usr/share/doc/bedops/README.Debian
-rw-r--r-- root/root      1441 2024-12-17 16:40 ./usr/share/doc/bedops/changelog.Debian.gz
-rw-r--r-- root/root     22675 2022-07-13 08:18 ./usr/share/doc/bedops/changelog.gz
-rw-r--r-- root/root      1156 2024-12-17 16:40 ./usr/share/doc/bedops/copyright
drwxr-xr-x root/root         0 2022-07-13 08:18 ./usr/share/doc/bedops/tests/
-rw-r--r-- root/root       954 2022-07-13 08:18 ./usr/share/doc/bedops/tests/Makefile
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/share/doc/bedops/tests/bedops/
-rw-r--r-- root/root      2166 2024-12-17 16:40 ./usr/share/doc/bedops/tests/bedops/Makefile.gz
drwxr-xr-x root/root         0 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/
-rw-r--r-- root/root       197 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.chop.001.expected
-rw-r--r-- root/root        44 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.chop.001a.test
-rw-r--r-- root/root        53 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.chop.001b.test
-rw-r--r-- root/root        24 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.chrom.001.expected
-rw-r--r-- root/root        26 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.complement.001.expected
-rw-r--r-- root/root        31 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.difference.001.expected
-rw-r--r-- root/root        23 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.ec.001a.test
-rw-r--r-- root/root        69 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.element-of.001.expected
-rw-r--r-- root/root        91 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.intersection.001.expected
-rw-r--r-- root/root        52 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.intersection.001a.test
-rw-r--r-- root/root       104 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.intersection.001b.test
-rw-r--r-- root/root        37 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.merge.001.expected
-rw-r--r-- root/root       111 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.merge.001.test
-rw-r--r-- root/root       368 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.named-pipe.001.expected
-rw-r--r-- root/root         0 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.not-element-of.001.expected
-rw-r--r-- root/root       148 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.partition.001.expected
-rw-r--r-- root/root        39 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.partition.001a.test
-rw-r--r-- root/root        56 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.partition.001b.test
-rw-r--r-- root/root        40 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.partition.001c.test
-rw-r--r-- root/root       257 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.stdin.001.expected
-rw-r--r-- root/root       130 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.symdiff.001.expected
-rw-r--r-- root/root       134 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.union.001.expected
-rw-r--r-- root/root       126 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/001.union.001.test
-rw-r--r-- root/root       171 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.chop.002.expected
-rw-r--r-- root/root        20 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.chrom.002.expected
-rw-r--r-- root/root         0 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.complement.002.expected
-rw-r--r-- root/root      2172 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.difference.002.expected
-rw-r--r-- root/root      3033 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.difference.002a.test
-rw-r--r-- root/root      2941 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.difference.002b.test
-rw-r--r-- root/root        18 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.element-of.002.expected
-rw-r--r-- root/root        13 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.intersection.002.expected
-rw-r--r-- root/root        26 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.intersection.002.test
-rw-r--r-- root/root        11 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.merge.002.expected
-rw-r--r-- root/root        11 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.not-element-of.002.expected
-rw-r--r-- root/root       376 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.partition.002.expected
-rw-r--r-- root/root        48 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.partition.002a.test
-rw-r--r-- root/root        49 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.partition.002b.test
-rw-r--r-- root/root       101 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.partition.002c.test
-rw-r--r-- root/root        39 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.partition.002d.test
-rw-r--r-- root/root       131 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.partition.002e.test
-rw-r--r-- root/root       118 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.symdiff.002.expected
-rw-r--r-- root/root        56 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/002.union.002.expected
-rw-r--r-- root/root       368 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.chop.003.expected
-rw-r--r-- root/root        24 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.chrom.003.expected
-rw-r--r-- root/root        61 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.complement.003.expected
-rw-r--r-- root/root      3794 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.difference.003.expected
-rw-r--r-- root/root        42 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.element-of.003.expected
-rw-r--r-- root/root         0 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.intersection.003.expected
-rw-r--r-- root/root        35 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.merge.003.expected
-rw-r--r-- root/root        46 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.merge.003.test
-rw-r--r-- root/root        21 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.not-element-of.003.expected
-rw-r--r-- root/root        63 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.not-element-of.003a.test
-rw-r--r-- root/root        42 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.not-element-of.003b.test
-rw-r--r-- root/root       153 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.partition.003.expected
-rw-r--r-- root/root       398 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.partition.003.test
-rw-r--r-- root/root        22 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.symdiff.003.expected
-rw-r--r-- root/root        18 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.symdiff.003a.test
-rw-r--r-- root/root        29 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.symdiff.003b.test
-rw-r--r-- root/root         9 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.symdiff.003c.test
-rw-r--r-- root/root        11 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.symdiff.003d.test
-rw-r--r-- root/root       355 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.union.003.expected
-rw-r--r-- root/root       360 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/003.union.003.test
-rw-r--r-- root/root       257 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.chop.004.expected
-rw-r--r-- root/root        24 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.chrom.004.expected
-rw-r--r-- root/root       111 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.complement.004.expected
-rw-r--r-- root/root        46 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.complement.004a.test
-rw-r--r-- root/root       132 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.complement.004b.test
-rw-r--r-- root/root        94 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.complement.004c.test
-rw-r--r-- root/root        30 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.difference.004.expected
-rw-r--r-- root/root        30 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.difference.004a.test
-rw-r--r-- root/root        31 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.difference.004b.test
-rw-r--r-- root/root         0 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.element-of.004.expected
-rw-r--r-- root/root        92 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.element-of.004a.test
-rw-r--r-- root/root        23 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.element-of.004b.test
-rw-r--r-- root/root        49 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.intersection.004.expected
-rw-r--r-- root/root       103 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.intersection.004a.test
-rw-r--r-- root/root        85 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.intersection.004b.test
-rw-r--r-- root/root        47 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.intersection.004c.test
-rw-r--r-- root/root        72 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.merge.004.expected
-rw-r--r-- root/root       117 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.partition.004.expected
-rw-r--r-- root/root       117 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.partition.004.test
-rw-r--r-- root/root        52 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.symdiff.004.expected
-rw-r--r-- root/root        22 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.union.004.expected
-rw-r--r-- root/root        32 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/004.union.004.test
-rw-r--r-- root/root       385 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/005.chop.005.expected
-rw-r--r-- root/root        87 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/005.chop.005.test
-rw-r--r-- root/root        20 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/005.complement.005.expected
-rw-r--r-- root/root        40 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/005.complement.005.test
-rw-r--r-- root/root        31 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/005.difference.005.expected
-rw-r--r-- root/root        93 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/005.merge.005.expected
-rw-r--r-- root/root        43 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/005.merge.005.test
-rw-r--r-- root/root         0 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/005.symdiff.005.expected
-rw-r--r-- root/root        11 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/005.union.005.expected
-rw-r--r-- root/root        35 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/006.complement.006.expected
-rw-r--r-- root/root         0 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/006.difference.006.expected
-rw-r--r-- root/root        41 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/006.merge.006.expected
-rw-r--r-- root/root        37 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/006.merge.006a.test
-rw-r--r-- root/root        35 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/006.merge.006b.test
-rw-r--r-- root/root        31 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/006.merge.006c.test
-rw-r--r-- root/root         0 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/006.union.006.expected
-rw-r--r-- root/root         9 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/007.complement.007.expected
-rw-r--r-- root/root         0 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/007.difference.007.expected
-rw-r--r-- root/root        55 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/007.merge.007.expected
-rw-r--r-- root/root        56 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/007.merge.007a.test
-rw-r--r-- root/root        69 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/007.merge.007b.test
-rw-r--r-- root/root        33 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/007.union.007.expected
-rw-r--r-- root/root        79 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/008.complement.008.expected
-rw-r--r-- root/root       197 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/008.merge.008.expected
-rw-r--r-- root/root        33 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/008.union.008.expected
-rw-r--r-- root/root       175 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/009.complement.009.expected
-rw-r--r-- root/root        52 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/009.merge.009.expected
-rw-r--r-- root/root        33 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/009.union.009.expected
-rw-r--r-- root/root        43 2022-07-13 08:18 ./usr/share/doc/bedops/tests/bedops/data/009.union.009.test
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/share/doc/bedops/tests/conversion/
-rw-r--r-- root/root      1159 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/Makefile.gz
drwxr-xr-x root/root         0 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/
-rw-r--r-- root/root       398 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/001.wig2bed_with_chr_prefix_no_header.001.expected
-rw-r--r-- root/root       352 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/001.wig2bed_with_chr_prefix_no_header.001.wig
-rw-r--r-- root/root       368 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/002.wig2bed_no_chr_prefix_no_header.001.expected
-rw-r--r-- root/root       322 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/002.wig2bed_no_chr_prefix_no_header.001.wig
-rw-r--r-- root/root       102 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/003.wig2bed_fixedStep_with_chr_prefix_no_header.001.expected
-rw-r--r-- root/root        52 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/003.wig2bed_fixedStep_with_chr_prefix_no_header.001.wig
-rw-r--r-- root/root       102 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/003.wig2bed_fixedStep_with_chr_prefix_no_header.002.expected
-rw-r--r-- root/root        60 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/003.wig2bed_fixedStep_with_chr_prefix_no_header.002.wig
-rw-r--r-- root/root        93 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/004.wig2bed_fixedStep_no_chr_prefix_no_header.001.expected
-rw-r--r-- root/root        49 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/004.wig2bed_fixedStep_no_chr_prefix_no_header.001.wig
-rw-r--r-- root/root        93 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/004.wig2bed_fixedStep_no_chr_prefix_no_header.002.expected
-rw-r--r-- root/root        56 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/004.wig2bed_fixedStep_no_chr_prefix_no_header.002.wig
-rw-r--r-- root/root       170 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/005.wig2bed_variableStep_with_chr_prefix_no_header.001.expected
-rw-r--r-- root/root        85 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/005.wig2bed_variableStep_with_chr_prefix_no_header.001.wig
-rw-r--r-- root/root        34 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/005.wig2bed_variableStep_with_chr_prefix_no_header.002.expected
-rw-r--r-- root/root        43 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/005.wig2bed_variableStep_with_chr_prefix_no_header.002.wig
-rw-r--r-- root/root       155 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/006.wig2bed_variableStep_no_chr_prefix_no_header.001.expected
-rw-r--r-- root/root        82 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/006.wig2bed_variableStep_no_chr_prefix_no_header.001.wig
-rw-r--r-- root/root        31 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/006.wig2bed_variableStep_no_chr_prefix_no_header.002.expected
-rw-r--r-- root/root        40 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/006.wig2bed_variableStep_no_chr_prefix_no_header.002.wig
-rw-r--r-- root/root       538 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/007.wig2bed_multipleTracks_with_chr_prefix_with_header.001.expected
-rw-r--r-- root/root       454 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/007.wig2bed_multipleTracks_with_chr_prefix_with_header.001.wig
-rw-r--r-- root/root       583 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/007.wig2bed_multipleTracks_with_chr_prefix_with_header.002.expected
-rw-r--r-- root/root       700 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/007.wig2bed_multipleTracks_with_chr_prefix_with_header.003.expected
-rw-r--r-- root/root       763 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/007.wig2bed_multipleTracks_with_chr_prefix_with_header.004.expected
-rw-r--r-- root/root       493 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/008.wig2bed_multipleTracks_no_chr_prefix_with_header.001.expected
-rw-r--r-- root/root       421 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/008.wig2bed_multipleTracks_no_chr_prefix_with_header.001.wig
-rw-r--r-- root/root       538 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/008.wig2bed_multipleTracks_no_chr_prefix_with_header.002.expected
-rw-r--r-- root/root       652 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/008.wig2bed_multipleTracks_no_chr_prefix_with_header.003.expected
-rw-r--r-- root/root       715 2022-07-13 08:18 ./usr/share/doc/bedops/tests/conversion/data/008.wig2bed_multipleTracks_no_chr_prefix_with_header.004.expected
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/share/doc/bedops/tests/starch/
-rw-r--r-- root/root      1078 2024-12-17 16:40 ./usr/share/doc/bedops/tests/starch/Makefile.gz
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/share/doc/bedops/tests/starch/data/
-rw-r--r-- root/root      1935 2022-07-13 08:18 ./usr/share/doc/bedops/tests/starch/data/001.starch_api.bedmap.001.expected
-rw-r--r-- root/root      2813 2022-07-13 08:18 ./usr/share/doc/bedops/tests/starch/data/001.starch_api.bedmap.001.test.gz
-rw-r--r-- root/root       772 2022-07-13 08:18 ./usr/share/doc/bedops/tests/starch/data/001.starchcat.disjoint_chrs.chr1.001.test
-rw-r--r-- root/root      1166 2022-07-13 08:18 ./usr/share/doc/bedops/tests/starch/data/001.starchcat.disjoint_chrs.chr1andChr2.001.expected
-rw-r--r-- root/root       772 2022-07-13 08:18 ./usr/share/doc/bedops/tests/starch/data/001.starchcat.disjoint_chrs.chr2.001.test
-rw-r--r-- root/root       764 2022-07-13 08:18 ./usr/share/doc/bedops/tests/starch/data/001.unstarch.signature.001.expected
-rw-r--r-- root/root      2851 2022-07-13 08:18 ./usr/share/doc/bedops/tests/starch/data/001.unstarch.signature.001.test.gz
-rw-r--r-- root/root       218 2022-07-13 08:18 ./usr/share/doc/bedops/tests/starch/data/002.unstarch.signature.001.expected
-rw-r--r-- root/root      2254 2022-07-13 08:18 ./usr/share/doc/bedops/tests/starch/data/002.unstarch.signature.001.test.gz
-rw-r--r-- root/root       109 2022-07-13 08:18 ./usr/share/doc/bedops/tests/starch/data/README
-rw-r--r-- root/root       426 2022-07-13 08:18 ./usr/share/doc/bedops/tests/starch/data/hg38.bed
-rw-r--r-- root/root      1516 2024-12-17 16:40 ./usr/share/doc/bedops/tests/starch/generate_random_intervals.sh
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/share/man/
drwxr-xr-x root/root         0 2024-12-17 16:40 ./usr/share/man/man1/
-rw-r--r-- root/root       348 2024-12-17 16:40 ./usr/share/man/man1/bam2bed.1.gz
-rw-r--r-- root/root       651 2024-12-17 16:40 ./usr/share/man/man1/bam2bed_gnuParallel.1.gz
-rw-r--r-- root/root       637 2024-12-17 16:40 ./usr/share/man/man1/bam2bed_sge.1.gz
-rw-r--r-- root/root       642 2024-12-17 16:40 ./usr/share/man/man1/bam2bed_slurm.1.gz
-rw-r--r-- root/root       357 2024-12-17 16:40 ./usr/share/man/man1/bam2starch.1.gz
-rw-r--r-- root/root       648 2024-12-17 16:40 ./usr/share/man/man1/bam2starch_gnuParallel.1.gz
-rw-r--r-- root/root       650 2024-12-17 16:40 ./usr/share/man/man1/bam2starch_sge.1.gz
-rw-r--r-- root/root       653 2024-12-17 16:40 ./usr/share/man/man1/bam2starch_slurm.1.gz
-rw-r--r-- root/root       578 2024-12-17 16:40 ./usr/share/man/man1/bedextract.1.gz
-rw-r--r-- root/root       358 2024-12-17 16:40 ./usr/share/man/man1/bedmap.1.gz
-rw-r--r-- root/root       374 2024-12-17 16:40 ./usr/share/man/man1/bedops-starch.1.gz
-rw-r--r-- root/root       430 2024-12-17 16:40 ./usr/share/man/man1/bedops.1.gz
-rw-r--r-- root/root       476 2024-12-17 16:40 ./usr/share/man/man1/closest-features.1.gz
-rw-r--r-- root/root       360 2024-12-17 16:40 ./usr/share/man/man1/convert2bed.1.gz
-rw-r--r-- root/root       348 2024-12-17 16:40 ./usr/share/man/man1/gff2bed.1.gz
-rw-r--r-- root/root       356 2024-12-17 16:40 ./usr/share/man/man1/gff2starch.1.gz
-rw-r--r-- root/root       348 2024-12-17 16:40 ./usr/share/man/man1/gtf2bed.1.gz
-rw-r--r-- root/root       356 2024-12-17 16:40 ./usr/share/man/man1/gtf2starch.1.gz
-rw-r--r-- root/root       348 2024-12-17 16:40 ./usr/share/man/man1/gvf2bed.1.gz
-rw-r--r-- root/root       356 2024-12-17 16:40 ./usr/share/man/man1/gvf2starch.1.gz
-rw-r--r-- root/root       347 2024-12-17 16:40 ./usr/share/man/man1/psl2bed.1.gz
-rw-r--r-- root/root       356 2024-12-17 16:40 ./usr/share/man/man1/psl2starch.1.gz
-rw-r--r-- root/root       350 2024-12-17 16:40 ./usr/share/man/man1/rmsk2bed.1.gz
-rw-r--r-- root/root       358 2024-12-17 16:40 ./usr/share/man/man1/rmsk2starch.1.gz
-rw-r--r-- root/root       347 2024-12-17 16:40 ./usr/share/man/man1/sam2bed.1.gz
-rw-r--r-- root/root       359 2024-12-17 16:40 ./usr/share/man/man1/sam2starch.1.gz
-rw-r--r-- root/root       367 2024-12-17 16:40 ./usr/share/man/man1/sort-bed.1.gz
-rw-r--r-- root/root       352 2024-12-17 16:40 ./usr/share/man/man1/starchcat.1.gz
-rw-r--r-- root/root       660 2024-12-17 16:40 ./usr/share/man/man1/starchcluster_gnuParallel.1.gz
-rw-r--r-- root/root       641 2024-12-17 16:40 ./usr/share/man/man1/starchcluster_sge.1.gz
-rw-r--r-- root/root       645 2024-12-17 16:40 ./usr/share/man/man1/starchcluster_slurm.1.gz
-rw-r--r-- root/root       355 2024-12-17 16:40 ./usr/share/man/man1/starchstrip.1.gz
-rw-r--r-- root/root       361 2024-12-17 16:40 ./usr/share/man/man1/unstarch.1.gz
-rw-r--r-- root/root       348 2024-12-17 16:40 ./usr/share/man/man1/vcf2bed.1.gz
-rw-r--r-- root/root       357 2024-12-17 16:40 ./usr/share/man/man1/vcf2starch.1.gz
-rw-r--r-- root/root       349 2024-12-17 16:40 ./usr/share/man/man1/wig2bed.1.gz
-rw-r--r-- root/root       357 2024-12-17 16:40 ./usr/share/man/man1/wig2starch.1.gz


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1352 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1431 B]
Fetched 3398 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
  appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
  libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl
  libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
  libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
  libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl
  libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
  libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl
  libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl
  libfile-sharedir-perl libfont-ttf-perl libglib2.0-0t64 libgssapi-krb5-2
  libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl
  libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl
  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libimport-into-perl libio-html-perl
  libio-interactive-perl libio-socket-ssl-perl libio-string-perl
  libipc-run3-perl libipc-system-simple-perl libiterator-perl
  libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1
  libkrb5-3 libkrb5support0 libldap-2.5-0 liblist-compare-perl
  liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl
  liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl
  libmodule-implementation-perl libmodule-runtime-perl libmoo-perl
  libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6
  libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl
  libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14
  libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl
  libpackage-stash-perl libparams-classify-perl libparams-util-perl
  libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl
  libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64
  libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2
  libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl
  libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d
  libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl
  libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl
  libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl
  libtext-levenshteinxs-perl libtext-markdown-discount-perl
  libtext-xslate-perl libtime-duration-perl libtime-moment-perl
  libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl
  libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl
  libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils
  perl-openssl-defaults plzip procps readline-common shared-mime-info t1utils
  ucf unzip
Suggested packages:
  apt-config-icons isoquery libxml-parser-perl low-memory-monitor krb5-doc
  krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl
  libbareword-filehandles-perl libindirect-perl libmultidimensional-perl
  libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl
  libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc
  zip
Recommended packages:
  gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libhtml-format-perl
  libio-compress-brotli-perl krb5-locales libldap-common
  liblist-someutils-xs-perl libfreezethaw-perl libgpm2 libmath-base85-perl
  libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules
  libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl
  libxml-sax-expat-perl psmisc linux-sysctl-defaults
The following NEW packages will be installed:
  appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
  libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl
  libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
  libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
  libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl
  libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
  libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl
  libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl
  libfile-sharedir-perl libfont-ttf-perl libglib2.0-0t64 libgssapi-krb5-2
  libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl
  libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl
  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libimport-into-perl libio-html-perl
  libio-interactive-perl libio-socket-ssl-perl libio-string-perl
  libipc-run3-perl libipc-system-simple-perl libiterator-perl
  libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1
  libkrb5-3 libkrb5support0 libldap-2.5-0 liblist-compare-perl
  liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl
  liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl
  libmodule-implementation-perl libmodule-runtime-perl libmoo-perl
  libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6
  libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl
  libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14
  libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl
  libpackage-stash-perl libparams-classify-perl libparams-util-perl
  libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl
  libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64
  libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2
  libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl
  libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d
  libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl
  libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl
  libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl
  libtext-levenshteinxs-perl libtext-markdown-discount-perl
  libtext-xslate-perl libtime-duration-perl libtime-moment-perl
  libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl
  libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl
  libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils
  perl-openssl-defaults plzip procps readline-common
  sbuild-build-depends-lintian-dummy:arm64 shared-mime-info t1utils ucf unzip
0 upgraded, 163 newly installed, 0 to remove and 0 not upgraded.
Need to get 19.9 MB of archives.
After this operation, 78.9 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B]
Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.4 [12.8 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5-2+b1 [136 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20240203 [158 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 ucf all 3.0046 [41.1 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.4-1 [1501 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b1 [759 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get:16 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB]
Get:21 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.1-1 [360 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 2.2.0-4+b2 [119 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.21-1 [63.0 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.0.4-1 [225 kB]
Get:33 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.0.4-1 [523 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.67-1 [35.5 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.1-2 [60.6 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.2.45-2 [120 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.2.45-2 [531 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.17.0-1 [3055 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40+b6 [67.8 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:51 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-1 [121 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.66-1 [217 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get:60 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB]
Get:61 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get:62 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b4 [36.1 kB]
Get:63 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get:67 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:68 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:69 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get:70 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.38-1+b1 [129 kB]
Get:71 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:72 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:73 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB]
Get:74 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB]
Get:75 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB]
Get:76 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-1+b4 [32.8 kB]
Get:77 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB]
Get:78 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB]
Get:79 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB]
Get:80 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB]
Get:81 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b4 [98.1 kB]
Get:82 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB]
Get:83 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB]
Get:84 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.84-1+b1 [24.2 kB]
Get:85 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB]
Get:86 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:87 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB]
Get:88 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB]
Get:89 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
Get:90 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
Get:91 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB]
Get:92 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:93 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get:94 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get:95 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB]
Get:96 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:97 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB]
Get:98 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:99 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:100 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB]
Get:101 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB]
Get:102 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB]
Get:103 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:104 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get:105 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:106 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B]
Get:107 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-2 [339 kB]
Get:108 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB]
Get:109 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB]
Get:110 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get:111 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:112 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB]
Get:113 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB]
Get:114 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get:115 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB]
Get:116 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB]
Get:117 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB]
Get:118 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB]
Get:119 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB]
Get:120 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB]
Get:121 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15~rc1-1 [38.8 kB]
Get:122 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB]
Get:123 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB]
Get:124 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB]
Get:125 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:126 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB]
Get:127 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB]
Get:128 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:129 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B]
Get:130 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.5.11-1+b1 [144 kB]
Get:131 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:132 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB]
Get:133 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB]
Get:134 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:135 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.146-1 [56.2 kB]
Get:136 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB]
Get:137 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB]
Get:138 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.636-1+b3 [42.3 kB]
Get:139 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB]
Get:140 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB]
Get:141 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB]
Get:142 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B]
Get:143 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.47-1 [64.7 kB]
Get:144 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.30-1+b1 [27.4 kB]
Get:145 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB]
Get:146 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B]
Get:147 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b3 [13.0 kB]
Get:148 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b1 [174 kB]
Get:149 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB]
Get:150 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b4 [73.2 kB]
Get:151 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-2+b3 [20.4 kB]
Get:152 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.19-1 [114 kB]
Get:153 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:154 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:155 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB]
Get:156 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b1 [314 kB]
Get:157 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.902.0+ds-2+b1 [35.5 kB]
Get:158 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.12~rc1-1 [65.1 kB]
Get:159 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:160 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB]
Get:161 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:162 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB]
Get:163 http://localhost:3142/debian unstable/main amd64 lintian all 2.121.1 [1058 kB]
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Setting up libapt-pkg-perl (0.1.40+b6) ...
Setting up liblz1:amd64 (1.15~rc1-1) ...
Setting up libberkeleydb-perl:amd64 (0.66-1) ...
Setting up plzip (1.12~rc1-1) ...
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode
Setting up libkeyutils1:amd64 (1.6.3-4) ...
Setting up libunicode-utf8-perl (0.62-2+b3) ...
Setting up libmouse-perl:amd64 (2.5.11-1+b1) ...
Setting up libdata-messagepack-perl (1.02-1+b4) ...
Setting up libclass-inspector-perl (1.36-3) ...
Setting up libdynaloader-functions-perl (0.004-1) ...
Setting up libtext-glob-perl (0.11-3) ...
Setting up libclass-method-modifiers-perl (2.15-1) ...
Setting up liblist-compare-perl (0.55-2) ...
Setting up libclone-perl:amd64 (0.47-1+b1) ...
Setting up libyaml-0-2:amd64 (0.2.5-2) ...
Setting up libsub-identify-perl (0.14-3+b3) ...
Setting up libcpanel-json-xs-perl:amd64 (4.38-1+b1) ...
Setting up libhtml-tagset-perl (3.24-1) ...
Setting up libdevel-size-perl (0.84-1+b1) ...
Setting up unzip (6.0-28) ...
Setting up libbrotli1:amd64 (1.1.0-2+b6) ...
Setting up libsqlite3-0:amd64 (3.46.1-1) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libyaml-libyaml-perl (0.902.0+ds-2+b1) ...
Setting up libio-interactive-perl (1.025-1) ...
Setting up libtry-tiny-perl (0.32-1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libnghttp2-14:amd64 (1.64.0-1) ...
Setting up perl-openssl-defaults:amd64 (7+b2) ...
Setting up libmldbm-perl (2.05-4) ...
Setting up libxml-namespacesupport-perl (1.12-2) ...
Setting up liblzo2-2:amd64 (2.10-3+b1) ...
Setting up libtime-moment-perl (0.44-2+b4) ...
Setting up libencode-locale-perl (1.05-3) ...
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Setting up libsereal-encoder-perl (5.004+ds-1+b3) ...
Setting up liblist-utilsby-perl (0.12-2) ...
Setting up libnet-netmask-perl (2.0002-2) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up libkrb5support0:amd64 (1.21.3-3) ...
Setting up libnumber-compare-perl (0.03-3) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ...
Setting up patchutils (0.4.2-1) ...
Setting up libjson-maybexs-perl (1.004008-1) ...
Setting up libxml-sax-base-perl (1.09-3) ...
Setting up libio-string-perl (1.08-4) ...
Setting up libnetaddr-ip-perl (4.079+dfsg-2+b4) ...
Setting up libglib2.0-0t64:amd64 (2.82.4-1) ...
No schema files found: doing nothing.
Setting up libclass-data-inheritable-perl (0.10-1) ...
Setting up libfile-find-rule-perl (0.34-3) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libipc-system-simple-perl (1.30-2) ...
Setting up libnet-domain-tld-perl (1.75-4) ...
Setting up libperlio-utf8-strict-perl (0.010-1+b3) ...
Setting up t1utils (1.41-4) ...
Setting up shared-mime-info (2.4-5+b1) ...
Setting up diffstat (1.67-1) ...
Setting up libproc2-0:amd64 (2:4.0.4-6) ...
Setting up libvariable-magic-perl (0.64-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ...
Setting up libncursesw6:amd64 (6.5-2+b1) ...
Setting up libk5crypto3:amd64 (1.21.3-3) ...
Setting up libparams-util-perl (1.102-3+b1) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ...
Setting up libtime-duration-perl (1.21-2) ...
Setting up libtext-xslate-perl:amd64 (3.5.9-2+b1) ...
Setting up libnghttp3-9:amd64 (1.6.0-2) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libcapture-tiny-perl (0.48-2) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libsub-name-perl:amd64 (0.28-1) ...
Setting up libdata-validate-domain-perl (0.15-1) ...
Setting up libproc-processtable-perl:amd64 (0.636-1+b3) ...
Setting up libpath-tiny-perl (0.146-1) ...
Setting up lzop (1.04-2) ...
Setting up libassuan9:amd64 (3.0.1-2) ...
Setting up procps (2:4.0.4-6) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libipc-run3-perl (0.049-1) ...
Setting up libregexp-wildcards-perl (1.05-3) ...
Setting up libfile-sharedir-perl (1.118-3) ...
Setting up libaliased-perl (0.34-3) ...
Setting up netbase (6.4) ...
Setting up libngtcp2-16:amd64 (1.9.1-1) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006008-1) ...
Setting up libdevel-stacktrace-perl (2.0500-1) ...
Setting up libclass-xsaccessor-perl (1.19-4+b4) ...
Setting up libkrb5-3:amd64 (1.21.3-3) ...
Setting up libstemmer0d:amd64 (2.2.0-4+b2) ...
Setting up libsort-versions-perl (1.62-3) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libterm-readkey-perl (2.38-2+b4) ...
Setting up libfont-ttf-perl (1.06-2) ...
Setting up openssl (3.3.2-2) ...
Setting up libtext-levenshteinxs-perl (0.03-5+b4) ...
Setting up libperlio-gzip-perl (0.20-1+b4) ...
Setting up readline-common (8.2-6) ...
Setting up libhtml-html5-entities-perl (0.004-3) ...
Setting up libsereal-decoder-perl (5.004+ds-1+b3) ...
Setting up libmarkdown2:amd64 (2.2.7-2.1) ...
Setting up liburi-perl (5.30-1) ...
Setting up iso-codes (4.17.0-1) ...
Setting up libnet-ipv6addr-perl (1.02-1) ...
Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ...
Setting up libdata-validate-ip-perl (0.31-1) ...
Setting up libemail-address-xs-perl (1.05-1+b4) ...
Setting up libnet-ssleay-perl:amd64 (1.94-2) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up libfile-basedir-perl (0.09-2) ...
Setting up libfile-listing-perl (6.16-1) ...
Setting up libxmlb2:amd64 (0.3.21-1) ...
Setting up libnet-http-perl (6.23-1) ...
Setting up libtext-markdown-discount-perl (0.16-1+b3) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ...
Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ...
Setting up ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
146 added, 0 removed; done.
Setting up libdata-validate-uri-perl (0.07-3) ...
Setting up libxs-parse-keyword-perl (0.47-1) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up ucf (3.0046) ...
Setting up libreadline8t64:amd64 (8.2-6) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libsyntax-keyword-try-perl (0.30-1+b1) ...
Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ...
Setting up gpgconf (2.2.45-2) ...
Setting up libio-socket-ssl-perl (2.089-1) ...
Setting up gpg (2.2.45-2) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (7.00-2) ...
Setting up libhtml-form-perl (6.12-1) ...
Setting up libiterator-perl (0.03+ds1-2) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up libiterator-util-perl (0.02+ds1-2) ...
Setting up libhttp-cookies-perl (6.11-1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b4) ...
Setting up libcgi-pm-perl (4.66-1) ...
Setting up libcurl3t64-gnutls:amd64 (8.11.1-1) ...
Setting up libappstream5:amd64 (1.0.4-1) ...
Setting up libxml-sax-perl (1.02+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up appstream (1.0.4-1) ...
✔ Metadata cache was updated successfully.
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-dpath-perl (0.60-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up liblist-someutils-perl (0.59-1) ...
Setting up libmoox-aliases-perl (0.001006-2) ...
Setting up libb-hooks-endofscope-perl (0.28-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up liblwp-protocol-https-perl (6.14-1) ...
Setting up libwww-perl (6.77-1) ...
Setting up libhtml-tokeparser-simple-perl (3.16-4) ...
Setting up libwww-mechanize-perl (2.19-1) ...
Setting up lintian (2.121.1) ...
Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ...
Processing triggers for libc-bin (2.40-4) ...
Processing triggers for man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Running lintian...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: n/a
Build-Time: 525
Distribution: unstable
Foreign Architectures: arm64
Host Architecture: arm64
Install-Time: 10
Job: bedops_2.4.41+dfsg-3
Lintian: pass
Machine Architecture: amd64
Package: bedops
Package-Time: 554
Source-Version: 2.4.41+dfsg-3
Space: n/a
Status: successful
Version: 2.4.41+dfsg-3
--------------------------------------------------------------------------------
Finished at 2024-12-22T09:51:07Z
Build needed 00:09:14, no disk space