sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | berkeley-express 1.5.2+dfsg-1 (s390x) Tue, 23 Apr 2019 14:07:25 +0000 | +==============================================================================+ Package: berkeley-express Version: 1.5.2+dfsg-1 Source Version: 1.5.2+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-d6bf15f1-a6b4-453b-9929-7833e940f05d' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [247 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-04-23-0811.36.pdiff [1336 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-04-23-0811.36.pdiff [1336 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-04-23-0811.36.pdiff [1062 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-04-23-0811.36.pdiff [1062 B] Get:6 http://debian.oregonstate.edu/debian unstable/main s390x Packages [7986 kB] Fetched 8291 kB in 2s (4448 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'berkeley-express' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/berkeley-express.git Please use: git clone https://salsa.debian.org/med-team/berkeley-express.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 377 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main berkeley-express 1.5.2+dfsg-1 (dsc) [2426 B] Get:2 http://debian.oregonstate.edu/debian unstable/main berkeley-express 1.5.2+dfsg-1 (tar) [366 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main berkeley-express 1.5.2+dfsg-1 (diff) [8904 B] Fetched 377 kB in 1s (615 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/berkeley-express-41bvLO/berkeley-express-1.5.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/berkeley-express-41bvLO' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-GIPYfp/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-GIPYfp/apt_archive ./ InRelease Get:2 copy:/<>/resolver-GIPYfp/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-GIPYfp/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-GIPYfp/apt_archive ./ Sources [361 B] Get:5 copy:/<>/resolver-GIPYfp/apt_archive ./ Packages [452 B] Fetched 1770 B in 0s (97.9 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-s390x-linux-gnu gcc-8-doc libstdc++6-8-dbg-s390x-cross gcc-8-multilib-s390x-linux-gnu libgcc1-dbg-s390x-cross libgomp1-dbg-s390x-cross libitm1-dbg-s390x-cross libatomic1-dbg-s390x-cross libasan5-dbg-s390x-cross liblsan0-dbg-s390x-cross libtsan0-dbg-s390x-cross libubsan1-dbg-s390x-cross libmpx2-dbg-s390x-cross libquadmath0-dbg-s390x-cross manpages-dev autoconf automake libtool flex bison gdb-s390x-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sbuild-build-depends-core-dummy:s390x sensible-utils ucf 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 39.5 MB of archives. After this operation, 145 MB of additional disk space will be used. Get:1 copy:/<>/resolver-GIPYfp/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.31.1-16 [2127 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu-base amd64 8.3.0-4cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-s390x-linux-gnu amd64 8.3.0-4cross1 [5937 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-4cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.28-7cross1 [1308 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-s390x-cross all 1:8.3.0-4cross1 [24.8 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 8.3.0-4cross1 [67.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 8.3.0-4cross1 [26.4 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 8.3.0-4cross1 [8084 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 8.3.0-4cross1 [352 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 8.3.0-4cross1 [314 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 8.3.0-4cross1 [113 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-s390x-cross all 8.3.0-4cross1 [640 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu amd64 8.3.0-4cross1 [6369 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 4.19.20-1cross1 [1227 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.28-7cross1 [2255 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-s390x-cross all 8.3.0-4cross1 [1483 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-s390x-linux-gnu amd64 8.3.0-4cross1 [6514 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.6 [6568 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.5 MB in 1s (60.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11936 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Unpacking crossbuild-essential-s390x (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:s390x. Preparing to unpack .../44-sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-s390x-linux-gnu (2.31.1-16) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-4cross1) ... Setting up libc6-s390x-cross (2.28-7cross1) ... Setting up gcc-8-s390x-linux-gnu-base:amd64 (8.3.0-4cross1) ... Setting up libatomic1-s390x-cross (8.3.0-4cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up linux-libc-dev-s390x-cross (4.19.20-1cross1) ... Setting up cross-config (2.6.15-2) ... Setting up cpp-8-s390x-linux-gnu (8.3.0-4cross1) ... Setting up libitm1-s390x-cross (8.3.0-4cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libc6-dev-s390x-cross (2.28-7cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libgomp1-s390x-cross (8.3.0-4cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgcc1-s390x-cross (1:8.3.0-4cross1) ... Setting up cpp-s390x-linux-gnu (4:8.3.0-1) ... Setting up libstdc++6-s390x-cross (8.3.0-4cross1) ... Setting up libasan5-s390x-cross (8.3.0-4cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libubsan1-s390x-cross (8.3.0-4cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-8-dev-s390x-cross (8.3.0-4cross1) ... Setting up gcc-8-s390x-linux-gnu (8.3.0-4cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libstdc++-8-dev-s390x-cross (8.3.0-4cross1) ... Setting up g++-8-s390x-linux-gnu (8.3.0-4cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-s390x-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up g++-s390x-linux-gnu (4:8.3.0-1) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-s390x (12.6) ... Setting up sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-GIPYfp/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-GIPYfp/apt_archive ./ InRelease Get:2 copy:/<>/resolver-GIPYfp/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-GIPYfp/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-GIPYfp/apt_archive ./ Sources [483 B] Get:5 copy:/<>/resolver-GIPYfp/apt_archive ./ Packages [573 B] Fetched 2019 B in 0s (115 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:s390x 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-GIPYfp/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:s390x. (Reading database ... 15032 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libboost-thread-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-date-time-dev, libbamtools-dev, libboost-tools-dev, cmake, libprotobuf-dev, protobuf-compiler Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libboost-thread-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-date-time-dev, libbamtools-dev, libboost-tools-dev, cmake, libprotobuf-dev, protobuf-compiler dpkg-deb: building package 'sbuild-build-depends-berkeley-express-dummy' in '/<>/resolver-GIPYfp/apt_archive/sbuild-build-depends-berkeley-express-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-berkeley-express-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-GIPYfp/apt_archive ./ InRelease Get:2 copy:/<>/resolver-GIPYfp/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-GIPYfp/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-GIPYfp/apt_archive ./ Sources [760 B] Get:5 copy:/<>/resolver-GIPYfp/apt_archive ./ Packages [793 B] Fetched 2516 B in 0s (146 kB/s) Reading package lists... Reading package lists... Install berkeley-express build dependencies (apt-based resolver) ---------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:s390x gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan5:s390x libatomic1:s390x libbamtools-dev:s390x libbamtools2.5.1:s390x libboost-atomic1.67-dev:s390x libboost-atomic1.67.0:s390x libboost-chrono1.67-dev:s390x libboost-chrono1.67.0:s390x libboost-date-time-dev:s390x libboost-date-time1.67-dev:s390x libboost-date-time1.67.0:s390x libboost-filesystem-dev:s390x libboost-filesystem1.67-dev:s390x libboost-filesystem1.67.0:s390x libboost-program-options-dev:s390x libboost-program-options1.67-dev:s390x libboost-program-options1.67.0:s390x libboost-serialization1.67-dev:s390x libboost-serialization1.67.0:s390x libboost-system-dev:s390x libboost-system1.67-dev:s390x libboost-system1.67.0:s390x libboost-thread-dev:s390x libboost-thread1.67-dev:s390x libboost-thread1.67.0:s390x libboost-tools-dev libboost1.67-dev:s390x libboost1.67-tools-dev libbsd0 libc6:s390x libc6-dev:s390x libcroco3 libcurl4 libelf1 libexpat1 libfile-stripnondeterminism-perl libgcc-8-dev:s390x libgcc1:s390x libglib2.0-0 libgomp1:s390x libgssapi-krb5-2 libitm1:s390x libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libncurses6 libnghttp2-14 libpipeline1 libprocps7 libprotobuf-dev:s390x libprotobuf-lite17:s390x libprotobuf17 libprotobuf17:s390x libprotoc17 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libstdc++-8-dev:s390x libstdc++6:s390x libtool libubsan1:s390x libuchardet0 libuv1 linux-libc-dev:s390x lsb-base m4 man-db po-debconf procps protobuf-compiler zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libbamtools-doc:s390x libboost1.67-doc:s390x libboost-container1.67-dev:s390x libboost-exception1.67-dev:s390x libboost-graph1.67-dev:s390x libboost-graph-parallel1.67-dev:s390x libboost-iostreams1.67-dev:s390x libboost-locale1.67-dev:s390x libboost-log1.67-dev:s390x libboost-math1.67-dev:s390x libboost-mpi1.67-dev:s390x libboost-mpi-python1.67-dev:s390x libboost-numpy1.67-dev:s390x libboost-python1.67-dev:s390x libboost-random1.67-dev:s390x libboost-regex1.67-dev:s390x libboost-signals1.67-dev:s390x libboost-stacktrace1.67-dev:s390x libboost-test1.67-dev:s390x libboost-timer1.67-dev:s390x libboost-type-erasure1.67-dev:s390x libboost-wave1.67-dev:s390x libmpfrc++-dev:s390x libntl-dev:s390x xsltproc doxygen docbook-xml docbook-xsl default-jdk fop glibc-doc:s390x libc-l10n:s390x locales:s390x manpages-dev:s390x krb5-doc krb5-user libstdc++-8-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:s390x ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc libprotobuf-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:s390x gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan5:s390x libatomic1:s390x libbamtools-dev:s390x libbamtools2.5.1:s390x libboost-atomic1.67-dev:s390x libboost-atomic1.67.0:s390x libboost-chrono1.67-dev:s390x libboost-chrono1.67.0:s390x libboost-date-time-dev:s390x libboost-date-time1.67-dev:s390x libboost-date-time1.67.0:s390x libboost-filesystem-dev:s390x libboost-filesystem1.67-dev:s390x libboost-filesystem1.67.0:s390x libboost-program-options-dev:s390x libboost-program-options1.67-dev:s390x libboost-program-options1.67.0:s390x libboost-serialization1.67-dev:s390x libboost-serialization1.67.0:s390x libboost-system-dev:s390x libboost-system1.67-dev:s390x libboost-system1.67.0:s390x libboost-thread-dev:s390x libboost-thread1.67-dev:s390x libboost-thread1.67.0:s390x libboost-tools-dev libboost1.67-dev:s390x libboost1.67-tools-dev libbsd0 libc6:s390x libc6-dev:s390x libcroco3 libcurl4 libelf1 libexpat1 libfile-stripnondeterminism-perl libgcc-8-dev:s390x libgcc1:s390x libglib2.0-0 libgomp1:s390x libgssapi-krb5-2 libitm1:s390x libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libncurses6 libnghttp2-14 libpipeline1 libprocps7 libprotobuf-dev:s390x libprotobuf-lite17:s390x libprotobuf17 libprotobuf17:s390x libprotoc17 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libstdc++-8-dev:s390x libstdc++6:s390x libtool libubsan1:s390x libuchardet0 libuv1 linux-libc-dev:s390x lsb-base m4 man-db po-debconf procps protobuf-compiler sbuild-build-depends-berkeley-express-dummy:s390x zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 46.3 MB of archives. After this operation, 323 MB of additional disk space will be used. Get:1 copy:/<>/resolver-GIPYfp/apt_archive ./ sbuild-build-depends-berkeley-express-dummy 0.invalid.0 [952 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 lsb-base all 10.2019031300 [28.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.3.3-4 [314 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-2 [65.6 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-2 [121 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-2 [1530 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-2 [368 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-2 [158 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1 [69.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1 [106 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3 [224 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.37.0-1 [83.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.64.0-2 [331 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.6-1 [105 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.24.1-1 [110 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main s390x gcc-8-base s390x 8.3.0-6 [191 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main s390x libgcc1 s390x 1:8.3.0-6 [24.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.28-8 [2504 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 8.3.0-6 [391 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 8.3.0-6 [321 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 8.3.0-6 [8184 B] Get:60 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-1 [90.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main s390x libbamtools2.5.1 s390x 2.5.1+dfsg-3 [143 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main s390x libbamtools-dev s390x 2.5.1+dfsg-3 [21.8 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 8.3.0-6 [69.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 8.3.0-6 [26.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 8.3.0-6 [113 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-8-dev s390x 8.3.0-6 [641 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 4.19.28-2 [1155 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.28-8 [2269 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-8-dev s390x 8.3.0-6 [1502 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main s390x libboost1.67-dev s390x 1.67.0-13 [8386 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main s390x libboost-atomic1.67.0 s390x 1.67.0-13 [226 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main s390x libboost-atomic1.67-dev s390x 1.67.0-13 [225 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main s390x libboost-system1.67.0 s390x 1.67.0-13 [229 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main s390x libboost-chrono1.67.0 s390x 1.67.0-13 [233 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main s390x libboost-chrono1.67-dev s390x 1.67.0-13 [235 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main s390x libboost-date-time1.67.0 s390x 1.67.0-13 [238 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main s390x libboost-serialization1.67.0 s390x 1.67.0-13 [310 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main s390x libboost-serialization1.67-dev s390x 1.67.0-13 [349 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main s390x libboost-date-time1.67-dev s390x 1.67.0-13 [246 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main s390x libboost-date-time-dev s390x 1.67.0.1 [3648 B] Get:81 http://debian.oregonstate.edu/debian unstable/main s390x libboost-filesystem1.67.0 s390x 1.67.0-13 [257 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main s390x libboost-system1.67-dev s390x 1.67.0-13 [231 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main s390x libboost-filesystem1.67-dev s390x 1.67.0-13 [264 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main s390x libboost-filesystem-dev s390x 1.67.0.1 [3684 B] Get:85 http://debian.oregonstate.edu/debian unstable/main s390x libboost-program-options1.67.0 s390x 1.67.0-13 [341 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main s390x libboost-program-options1.67-dev s390x 1.67.0-13 [368 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main s390x libboost-program-options-dev s390x 1.67.0.1 [3656 B] Get:88 http://debian.oregonstate.edu/debian unstable/main s390x libboost-system-dev s390x 1.67.0.1 [3788 B] Get:89 http://debian.oregonstate.edu/debian unstable/main s390x libboost-thread1.67.0 s390x 1.67.0-13 [264 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x libboost-thread1.67-dev s390x 1.67.0-13 [265 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x libboost-thread-dev s390x 1.67.0.1 [3672 B] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libboost1.67-tools-dev amd64 1.67.0-13 [1432 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libboost-tools-dev amd64 1.67.0.1 [3824 B] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1 [211 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libprotobuf17 s390x 3.6.1.3-2 [716 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x libprotobuf-lite17 s390x 3.6.1.3-2 [152 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libprotobuf-dev s390x 3.6.1.3-2 [1004 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libprotobuf17 amd64 3.6.1.3-2 [814 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libprotoc17 amd64 3.6.1.3-2 [665 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 protobuf-compiler amd64 3.6.1.3-2 [64.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.3 MB in 1s (63.9 MB/s) Selecting previously unselected package libbsd0:amd64. 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No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1b-2) ... Setting up libprocps7:amd64 (2:3.3.15-2) ... Setting up libnghttp2-14:amd64 (1.37.0-1) ... Setting up linux-libc-dev:s390x (4.19.28-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libboost-tools-dev (1.67.0.1) ... Setting up libldap-common (2.4.47+dfsg-3) ... Setting up libkrb5support0:amd64 (1.17-2) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.24.1-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:s390x (8.3.0-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libk5crypto3:amd64 (1.17-2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:amd64 (1.17-2) ... Setting up libprotobuf17:amd64 (3.6.1.3-2) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libprotoc17:amd64 (3.6.1.3-2) ... Setting up protobuf-compiler (3.6.1.3-2) ... Setting up libtool (2.4.6-10) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... 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Setting up sbuild-build-depends-berkeley-express-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-6 gcc-8_8.3.0-6 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-6 libstdc++-8-dev-s390x-cross_8.3.0-4cross1 libstdc++6_8.3.0-6 libstdc++6-s390x-cross_8.3.0-4cross1 linux-libc-dev_4.19.28-2 Package versions: adduser_3.118 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16 binutils-common_2.31.1-16 binutils-s390x-linux-gnu_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-6 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login_1:4.5-1.1 lsb-base_10.2019031300 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 procps_2:3.3.15-2 protobuf-compiler_3.6.1.3-2 sbuild-build-depends-berkeley-express-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Apr 9 06:46:11 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./berkeley-express_1.5.2+dfsg-1.dsc dpkg-source: info: extracting berkeley-express in /<>/berkeley-express-1.5.2+dfsg dpkg-source: info: unpacking berkeley-express_1.5.2+dfsg.orig.tar.xz dpkg-source: info: unpacking berkeley-express_1.5.2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling-fixes dpkg-source: info: applying fix-bamtools-path dpkg-source: info: applying drop-zlib dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying correct-debug-flags.patch dpkg-source: info: applying privacy-breach.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-d6bf15f1-a6b4-453b-9929-7833e940f05d SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package berkeley-express dpkg-buildpackage: info: source version 1.5.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>/berkeley-express-1.5.2+dfsg' dh_clean src/config.h make[1]: Leaving directory '/<>/berkeley-express-1.5.2+dfsg' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-s390x-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=s390x -DCMAKE_C_COMPILER=s390x-linux-gnu-gcc -DCMAKE_CXX_COMPILER=s390x-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/s390x-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/s390x-linux-gnu-gcc -- Check for working C compiler: /usr/bin/s390x-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/s390x-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/s390x-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.67.0 -- Found the following Boost libraries: -- thread -- system -- filesystem -- program_options -- date_time -- chrono -- atomic -- Could NOT find GPERFTOOLS_TCMALLOC: Install to improve speed. -- Found Protobuf: /usr/lib/s390x-linux-gnu/libprotobuf.so;-lpthread (found version "3.6.1") -- Do not try to find libbamtools.a -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu dh_auto_build -a cd obj-s390x-linux-gnu && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=s390x-linux-gnu-pkg-config CXX=s390x-linux-gnu-g\+\+ CC=s390x-linux-gnu-gcc make[1]: Entering directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -S/<>/berkeley-express-1.5.2+dfsg -B/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/CMakeFiles /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend make[3]: Entering directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' [ 5%] Running cpp protocol buffer compiler on /<>/berkeley-express-1.5.2+dfsg/src/targets.proto cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/protoc --cpp_out /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src -I /<>/berkeley-express-1.5.2+dfsg/src /<>/berkeley-express-1.5.2+dfsg/src/targets.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: targets.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) [ 11%] Running cpp protocol buffer compiler on /<>/berkeley-express-1.5.2+dfsg/src/alignments.proto cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/protoc --cpp_out /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src -I /<>/berkeley-express-1.5.2+dfsg/src /<>/berkeley-express-1.5.2+dfsg/src/alignments.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: alignments.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/berkeley-express-1.5.2+dfsg /<>/berkeley-express-1.5.2+dfsg/src /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake --color= Scanning dependencies of target express make[3]: Leaving directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/build make[3]: Entering directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' [ 16%] Building CXX object src/CMakeFiles/express.dir/biascorrection.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/biascorrection.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/biascorrection.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 22%] Building CXX object src/CMakeFiles/express.dir/bundles.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/bundles.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/bundles.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 27%] Building CXX object src/CMakeFiles/express.dir/directiondetector.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/directiondetector.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/directiondetector.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 33%] Building CXX object src/CMakeFiles/express.dir/fragments.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/fragments.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/fragments.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 38%] Building CXX object src/CMakeFiles/express.dir/lengthdistribution.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/lengthdistribution.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/lengthdistribution.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 44%] Building CXX object src/CMakeFiles/express.dir/main.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/main.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/main.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 50%] Building CXX object src/CMakeFiles/express.dir/mapparser.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/mapparser.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/mapparser.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 55%] Building CXX object src/CMakeFiles/express.dir/markovmodel.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/markovmodel.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/markovmodel.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 61%] Building CXX object src/CMakeFiles/express.dir/mismatchmodel.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/mismatchmodel.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/mismatchmodel.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 66%] Building CXX object src/CMakeFiles/express.dir/robertsfilter.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/robertsfilter.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/robertsfilter.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 72%] Building CXX object src/CMakeFiles/express.dir/sequence.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/sequence.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/sequence.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 77%] Building CXX object src/CMakeFiles/express.dir/targets.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/targets.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/targets.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 83%] Building CXX object src/CMakeFiles/express.dir/threadsafety.cpp.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/threadsafety.cpp.o -c /<>/berkeley-express-1.5.2+dfsg/src/threadsafety.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 88%] Building CXX object src/CMakeFiles/express.dir/alignments.pb.cc.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/alignments.pb.cc.o -c /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src/alignments.pb.cc : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 94%] Building CXX object src/CMakeFiles/express.dir/targets.pb.cc.o cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/targets.pb.cc.o -c /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src/targets.pb.cc : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [100%] Linking CXX executable express cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/express.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/express.dir/biascorrection.cpp.o CMakeFiles/express.dir/bundles.cpp.o CMakeFiles/express.dir/directiondetector.cpp.o CMakeFiles/express.dir/fragments.cpp.o CMakeFiles/express.dir/lengthdistribution.cpp.o CMakeFiles/express.dir/main.cpp.o CMakeFiles/express.dir/mapparser.cpp.o CMakeFiles/express.dir/markovmodel.cpp.o CMakeFiles/express.dir/mismatchmodel.cpp.o CMakeFiles/express.dir/robertsfilter.cpp.o CMakeFiles/express.dir/sequence.cpp.o CMakeFiles/express.dir/targets.cpp.o CMakeFiles/express.dir/threadsafety.cpp.o CMakeFiles/express.dir/alignments.pb.cc.o CMakeFiles/express.dir/targets.pb.cc.o -o express -lboost_thread -lpthread -lboost_system -lboost_filesystem -lboost_program_options -lboost_date_time -lboost_chrono -lboost_atomic -lbamtools -lprotobuf -lpthread -lrt make[3]: Leaving directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' [100%] Built target express make[2]: Leaving directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a cd obj-s390x-linux-gnu && make -j1 install DESTDIR=/<>/berkeley-express-1.5.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -S/<>/berkeley-express-1.5.2+dfsg -B/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/CMakeFiles /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend make[3]: Entering directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' cd /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/berkeley-express-1.5.2+dfsg /<>/berkeley-express-1.5.2+dfsg/src /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/build make[3]: Entering directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/express.dir/build'. make[3]: Leaving directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' [100%] Built target express make[2]: Leaving directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/berkeley-express-1.5.2+dfsg/debian/tmp/usr/bin/express make[1]: Leaving directory '/<>/berkeley-express-1.5.2+dfsg/obj-s390x-linux-gnu' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>/berkeley-express-1.5.2+dfsg' dh_compress --exclude=express-doc.pdf make[1]: Leaving directory '/<>/berkeley-express-1.5.2+dfsg' dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/berkeley-express/usr/lib/debian-med/bin/express was not linked against libboost_chrono.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/berkeley-express/usr/lib/debian-med/bin/express was not linked against librt.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/berkeley-express/usr/lib/debian-med/bin/express was not linked against libboost_atomic.so.1.67.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'berkeley-express' in '../berkeley-express_1.5.2+dfsg-1_s390x.deb'. dpkg-deb: building package 'berkeley-express-dbgsym' in '../berkeley-express-dbgsym_1.5.2+dfsg-1_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../berkeley-express_1.5.2+dfsg-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-04-23T14:10:07Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-GIPYfp/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-berkeley-express-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-GIPYfp/apt_archive ./ InRelease Get:2 copy:/<>/resolver-GIPYfp/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-GIPYfp/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-GIPYfp/apt_archive ./ Sources [880 B] Get:5 copy:/<>/resolver-GIPYfp/apt_archive ./ Packages [909 B] Fetched 2752 B in 0s (139 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:s390x t1utils 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 6232 kB of archives. After this operation, 16.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-GIPYfp/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-1 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-2 [640 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-1 [867 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.13.0 [1175 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6232 kB in 0s (28.3 MB/s) Selecting previously unselected package netbase. (Reading database ... 35710 files and directories currently installed.) Preparing to unpack .../00-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.13-1_amd64.deb ... Unpacking gpgconf (2.2.13-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.27.2-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.27.2-2) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.13-1_amd64.deb ... Unpacking gpg (2.2.13-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.34+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.34+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../09-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../10-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../11-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../12-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../13-libcgi-pm-perl_4.40-1_all.deb ... Unpacking libcgi-pm-perl (4.40-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../14-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../15-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../16-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../17-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../18-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../19-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../20-libnet-ssleay-perl_1.85-2+b1_amd64.deb ... Unpacking libnet-ssleay-perl (1.85-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../21-libio-socket-ssl-perl_2.060-3_all.deb ... Unpacking libio-socket-ssl-perl (2.060-3) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../22-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../23-libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../24-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../25-libnet-dns-perl_1.19-1_all.deb ... Unpacking libnet-dns-perl (1.19-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../26-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../27-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../28-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../29-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../30-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../31-libfuture-perl_0.39-1_all.deb ... Unpacking libfuture-perl (0.39-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../32-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../33-libio-async-perl_0.72-1_all.deb ... Unpacking libio-async-perl (0.72-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../34-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../35-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../36-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) ... Selecting previously unselected package libparse-debianchangelog-perl. Preparing to unpack .../37-libparse-debianchangelog-perl_1.2.0-13_all.deb ... Unpacking libparse-debianchangelog-perl (1.2.0-13) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../38-libpath-tiny-perl_0.108-1_all.deb ... Unpacking libpath-tiny-perl (0.108-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../39-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../40-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../41-libyaml-0-2_0.2.1-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.1-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../42-libyaml-libyaml-perl_0.76+repack-1_amd64.deb ... Unpacking libyaml-libyaml-perl (0.76+repack-1) ... Selecting previously unselected package patchutils. Preparing to unpack .../43-patchutils_0.3.4-2_amd64.deb ... Unpacking patchutils (0.3.4-2) ... Selecting previously unselected package t1utils. Preparing to unpack .../44-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package lintian. Preparing to unpack .../45-lintian_2.13.0_all.deb ... Unpacking lintian (2.13.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:s390x. Preparing to unpack .../46-sbuild-build-depends-lintian-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.34+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libsqlite3-0:amd64 (3.27.2-2) ... Setting up libfuture-perl (0.39-1) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up libio-async-perl (0.72-1) ... Setting up patchutils (0.3.4-2) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up diffstat (1.62-1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up netbase (5.6) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (7.0-5) ... Setting up liburi-perl (1.76-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libnet-dns-perl (1.19-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.13-1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up gpg (2.2.13-1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up libemail-valid-perl (1.202-1) ... Setting up lintian (2.13.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-8) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ berkeley-express_1.5.2+dfsg-1_s390x.changes: -------------------------------------------- Format: 1.8 Date: Sun, 08 Apr 2018 18:07:07 +0200 Source: berkeley-express Binary: berkeley-express berkeley-express-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 1.5.2+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: berkeley-express - Streaming quantification for high-throughput sequencing Changes: berkeley-express (1.5.2+dfsg-1) unstable; urgency=medium . * Team upload . [ Steffen Moeller ] * d/control: update stadards version to 4.1.3 (no changes required) * d/u/metadata: - added references to registries - yamllint cleanliness . [ Andreas Tille ] * New upstream version * d/watch: point to GitHub after upstream has added release tags * Point Vcs fields to salsa.debian.org (the URL is also normalized to the package name as per cme and general considerations) * debhelper 11 * express-doc.pdf is not in upstream source any more * Exclude binaries and other unneeded files like download archives of previous versions * provide html documentation * avoid privace breach JS in html doc Checksums-Sha1: 2714ddfc7a6a0748423f9a3a86cacc120479e8de 5292096 berkeley-express-dbgsym_1.5.2+dfsg-1_s390x.deb f2b7bba8571e4cffab61f4653eb32198d2039f5d 6696 berkeley-express_1.5.2+dfsg-1_s390x.buildinfo 3932ed757d772518e09353bbfb999ecf28fe101d 226860 berkeley-express_1.5.2+dfsg-1_s390x.deb Checksums-Sha256: 704030eb93e995b06d5768c304484f3c4d845c0e324b69030cb6b8ee64e327c1 5292096 berkeley-express-dbgsym_1.5.2+dfsg-1_s390x.deb 9dbcd5e27702458094025362d3b62d174dece362e23bedd552133ff2bea55b21 6696 berkeley-express_1.5.2+dfsg-1_s390x.buildinfo f6de1a9f7c517ba698e7d5d9e8b76d3f4a9981bbfc1cd11e72be6e053549594a 226860 berkeley-express_1.5.2+dfsg-1_s390x.deb Files: 6faa847b69cefa76950ef40dd3632c69 5292096 debug optional berkeley-express-dbgsym_1.5.2+dfsg-1_s390x.deb 4e1d83620d9bcf1f6848fd22a8217cde 6696 science optional berkeley-express_1.5.2+dfsg-1_s390x.buildinfo dccb78d01e09ad61ed1c494778fe673e 226860 science optional berkeley-express_1.5.2+dfsg-1_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: berkeley-express Binary: berkeley-express berkeley-express-doc Architecture: s390x Version: 1.5.2+dfsg-1 Checksums-Md5: 6faa847b69cefa76950ef40dd3632c69 5292096 berkeley-express-dbgsym_1.5.2+dfsg-1_s390x.deb dccb78d01e09ad61ed1c494778fe673e 226860 berkeley-express_1.5.2+dfsg-1_s390x.deb Checksums-Sha1: 2714ddfc7a6a0748423f9a3a86cacc120479e8de 5292096 berkeley-express-dbgsym_1.5.2+dfsg-1_s390x.deb 3932ed757d772518e09353bbfb999ecf28fe101d 226860 berkeley-express_1.5.2+dfsg-1_s390x.deb Checksums-Sha256: 704030eb93e995b06d5768c304484f3c4d845c0e324b69030cb6b8ee64e327c1 5292096 berkeley-express-dbgsym_1.5.2+dfsg-1_s390x.deb f6de1a9f7c517ba698e7d5d9e8b76d3f4a9981bbfc1cd11e72be6e053549594a 226860 berkeley-express_1.5.2+dfsg-1_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 23 Apr 2019 14:10:06 +0000 Build-Path: /<>/berkeley-express-1.5.2+dfsg Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.2), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.31.1-16), binutils-common (= 2.31.1-16), binutils-x86-64-linux-gnu (= 2.31.1-16), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), cmake (= 3.13.4-1), cmake-data (= 3.13.4-1), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 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(= 2.28-8), libc6-dev (= 2.28-8), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.3.0-6), libcom-err2 (= 1.45.0-1), libcroco3 (= 0.6.12-3), libcurl4 (= 7.64.0-2), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.6), libelf1 (= 0.176-1), libexpat1 (= 2.2.6-1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.2-1), libgcc-8-dev (= 8.3.0-6), libgcc1 (= 1:8.3.0-6), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4), libgdbm6 (= 1.18.1-4), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.7-2), libgomp1 (= 8.3.0-6), libgpg-error0 (= 1.35-1), libgssapi-krb5-2 (= 1.17-2), libhogweed4 (= 3.4.1-1), libicu63 (= 63.1-6), libidn2-0 (= 2.0.5-1), libisl19 (= 0.20-2), libitm1 (= 8.3.0-6), libjsoncpp1 (= 1.7.4-3), libk5crypto3 (= 1.17-2), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-2), libkrb5support0 (= 1.17-2), libldap-2.4-2 (= 2.4.47+dfsg-3), libldap-common (= 2.4.47+dfsg-3), liblsan0 (= 8.3.0-6), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-6), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libnettle6 (= 3.4.1-1), libnghttp2-14 (= 1.37.0-1), libp11-kit0 (= 0.23.15-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libprocps7 (= 2:3.3.15-2), libprotobuf-dev (= 3.6.1.3-2), libprotobuf-lite17 (= 3.6.1.3-2), libprotobuf17 (= 3.6.1.3-2), libprotoc17 (= 3.6.1.3-2), libpsl5 (= 0.20.2-2), libquadmath0 (= 8.3.0-6), librhash0 (= 1.3.8-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2), libsasl2-2 (= 2.1.27+dfsg-1), libsasl2-modules-db (= 2.1.27+dfsg-1), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1b-2), libstdc++-8-dev (= 8.3.0-6), libstdc++6 (= 8.3.0-6), libsystemd0 (= 241-3), libtasn1-6 (= 4.13-3), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-6), libubsan1 (= 8.3.0-6), libuchardet0 (= 0.0.6-3), libudev1 (= 241-3), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libuv1 (= 1.24.1-1), libxml2 (= 2.9.4+dfsg1-7+b3), libzstd1 (= 1.3.8+dfsg-3), linux-libc-dev (= 4.19.28-2), login (= 1:4.5-1.1), lsb-base (= 10.2019031300), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), patch (= 2.7.6-3), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), procps (= 2:3.3.15-2), protobuf-compiler (= 3.6.1.3-2), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-5), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1), zlib1g-dev (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1523203627" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ berkeley-express-dbgsym_1.5.2+dfsg-1_s390x.deb ---------------------------------------------- new Debian package, version 2.0. size 5292096 bytes: control archive=552 bytes. 417 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: berkeley-express-dbgsym Source: berkeley-express Version: 1.5.2+dfsg-1 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 5399 Depends: berkeley-express (= 1.5.2+dfsg-1) Section: debug Priority: optional Description: debug symbols for berkeley-express Build-Ids: 2d25b86b31298eaf98537028f2ec5d1eea0558fa drwxr-xr-x root/root 0 2018-04-08 16:07 ./ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/lib/debug/.build-id/2d/ -rw-r--r-- root/root 5517704 2018-04-08 16:07 ./usr/lib/debug/.build-id/2d/25b86b31298eaf98537028f2ec5d1eea0558fa.debug drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/share/ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-04-08 16:07 ./usr/share/doc/berkeley-express-dbgsym -> berkeley-express berkeley-express_1.5.2+dfsg-1_s390x.deb --------------------------------------- new Debian package, version 2.0. size 226860 bytes: control archive=1924 bytes. 3141 bytes, 50 lines control 454 bytes, 6 lines md5sums Package: berkeley-express Version: 1.5.2+dfsg-1 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 885 Depends: libbamtools2.5.1, libboost-atomic1.67.0, libboost-chrono1.67.0, libboost-date-time1.67.0, libboost-filesystem1.67.0, libboost-program-options1.67.0, libboost-system1.67.0, libboost-thread1.67.0, libc6 (>= 2.27), libgcc1 (>= 1:3.0), libprotobuf17, libstdc++6 (>= 5.2) Recommends: med-config (>= 2.1) Section: science Priority: optional Homepage: http://bio.math.berkeley.edu/eXpress/index.html Description: Streaming quantification for high-throughput sequencing eXpress is a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences. Example applications include transcript-level RNA-Seq quantification, allele-specific/haplotype expression analysis (from RNA-Seq), transcription factor binding quantification in ChIP-Seq, and analysis of metagenomic data. It is based on an online-EM algorithm that results in space (memory) requirements proportional to the total size of the target sequences and time requirements that are proportional to the number of sampled fragments. Thus, in applications such as RNA-Seq, eXpress can accurately quantify much larger samples than other currently available tools greatly reducing computing infrastructure requirements. eXpress can be used to build lightweight high-throughput sequencing processing pipelines when coupled with a streaming aligner (such as Bowtie), as output can be piped directly into eXpress, effectively eliminating the need to store read alignments in memory or on disk. . In an analysis of the performance of eXpress for RNA-Seq data, it was observed that this efficiency does not come at a cost of accuracy. eXpress is more accurate than other available tools, even when limited to smaller datasets that do not require such efficiency. Moreover, like the Cufflinks program, eXpress can be used to estimate transcript abundances in multi-isoform genes. eXpress is also able to resolve multi-mappings of reads across gene families, and does not require a reference genome so that it can be used in conjunction with de novo assemblers such as Trinity, Oases, or Trans-ABySS. The underlying model is based on previously described probabilistic models developed for RNA-Seq but is applicable to other settings where target sequences are sampled, and includes parameters for fragment length distributions, errors in reads, and sequence-specific fragment bias. . eXpress can be used to resolve ambiguous mappings in other high-throughput sequencing based applications. The only required inputs to eXpress are a set of target sequences and a set of sequenced fragments multiply-aligned to them. While these target sequences will often be gene isoforms, they need not be. Haplotypes can be used as the reference for allele-specific expression analysis, binding regions for ChIP-Seq, or target genomes in metagenomics experiments. eXpress is useful in any analysis where reads multi-map to sequences that differ in abundance. drwxr-xr-x root/root 0 2018-04-08 16:07 ./ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/bin/ lrwxrwxrwx root/root 0 2018-04-08 16:07 ./usr/bin/berkeley-express -> ../lib/debian-med/bin/express drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 883224 2018-04-08 16:07 ./usr/lib/debian-med/bin/express drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/share/ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/share/doc/berkeley-express/ -rw-r--r-- root/root 987 2018-04-08 16:07 ./usr/share/doc/berkeley-express/README.Debian -rw-r--r-- root/root 1540 2018-04-02 15:44 ./usr/share/doc/berkeley-express/README.gz -rw-r--r-- root/root 917 2018-04-08 16:07 ./usr/share/doc/berkeley-express/changelog.Debian.gz -rw-r--r-- root/root 2819 2018-04-08 16:07 ./usr/share/doc/berkeley-express/copyright drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/share/man/ drwxr-xr-x root/root 0 2018-04-08 16:07 ./usr/share/man/man1/ -rw-r--r-- root/root 1192 2018-04-08 16:07 ./usr/share/man/man1/berkeley-express.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 102048 Build-Time: 121 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 30 Job: berkeley-express_1.5.2+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: berkeley-express Package-Time: 162 Source-Version: 1.5.2+dfsg-1 Space: 102048 Status: successful Version: 1.5.2+dfsg-1 -------------------------------------------------------------------------------- Finished at 2019-04-23T14:10:07Z Build needed 00:02:42, 102048k disk space