sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | bifrost 1.3.5-2 (armel) Fri, 24 Oct 2025 06:13:27 +0000 | +==============================================================================+ Package: bifrost Version: 1.3.5-2 Source Version: 1.3.5-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-50d1b4cc-96e7-444e-a3eb-bd03151e7234' with '<>' I: NOTICE: Log filtering will replace 'build/bifrost-9MlbOS/resolver-jlX2Rg' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [207 kB] Get:2 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/main Sources T-2025-10-24-0207.57-F-2025-10-24-0207.57.pdiff [16.6 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2025-10-24-0207.57-F-2025-10-24-0207.57.pdiff [22.1 kB] Get:4 http://localhost:3142/debian unstable/main Sources T-2025-10-24-0207.57-F-2025-10-24-0207.57.pdiff [16.6 kB] Get:6 http://localhost:3142/debian unstable/main armel Packages [9609 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2025-10-24-0207.57-F-2025-10-24-0207.57.pdiff [22.1 kB] Fetched 9981 kB in 2s (5343 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'bifrost' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bifrost.git Please use: git clone https://salsa.debian.org/med-team/bifrost.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 613 kB of source archives. Get:1 http://localhost:3142/debian unstable/main bifrost 1.3.5-2 (dsc) [2101 B] Get:2 http://localhost:3142/debian unstable/main bifrost 1.3.5-2 (tar) [357 kB] Get:3 http://localhost:3142/debian unstable/main bifrost 1.3.5-2 (diff) [254 kB] Fetched 613 kB in 2s (400 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/bifrost-9MlbOS/bifrost-1.3.5' with '<>' I: NOTICE: Log filtering will replace 'build/bifrost-9MlbOS' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [743 B] Get:5 copy:/<>/apt_archive ./ Packages [786 B] Fetched 2138 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils cmake cmake-data cpp-15-arm-linux-gnueabi cpp-arm-linux-gnueabi crossbuild-essential-armel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-15-arm-linux-gnueabi gcc-15-arm-linux-gnueabi-base gcc-15-base:armel gcc-15-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13t64 libasan8:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2 libcrypt-dev:armel libcrypt1:armel libcurl4t64 libdebhelper-perl libelf1t64 libexpat1 libfakeroot libffi8 libfile-stripnondeterminism-perl libgcc-15-dev:armel libgcc-15-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgnutls30t64 libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2 libidn2-0 libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libmagic-mgc libmagic1t64 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libp11-kit0 libpipeline1 libproc2-0 libpsl5t64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1t64 libstdc++-15-dev:armel libstdc++-15-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libtasn1-6 libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring5 libuv1t64 libxml2-16 linux-libc-dev-armel-cross m4 man-db po-debconf procps sensible-utils zlib1g:armel zlib1g-dev:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-15-locales cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff lrzip glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel manpages-dev:armel gnutls-bin krb5-doc krb5-user libstdc++-15-doc:armel libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armel ca-certificates libarchive-cpio-perl krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils cmake cmake-data cpp-15-arm-linux-gnueabi cpp-arm-linux-gnueabi crossbuild-essential-armel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-15-arm-linux-gnueabi gcc-15-arm-linux-gnueabi-base gcc-15-base:armel gcc-15-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13t64 libasan8:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2 libcrypt-dev:armel libcrypt1:armel libcurl4t64 libdebhelper-perl libelf1t64 libexpat1 libfakeroot libffi8 libfile-stripnondeterminism-perl libgcc-15-dev:armel libgcc-15-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgnutls30t64 libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2 libidn2-0 libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libmagic-mgc libmagic1t64 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libp11-kit0 libpipeline1 libproc2-0 libpsl5t64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1t64 libstdc++-15-dev:armel libstdc++-15-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libtasn1-6 libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring5 libuv1t64 libxml2-16 linux-libc-dev-armel-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:armel sensible-utils zlib1g:armel zlib1g-dev:armel 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded. Need to get 313 MB of archives. After this operation, 1303 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:6 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:9 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:10 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get:12 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:13 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:15 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:16 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get:17 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:18 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:19 http://localhost:3142/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get:20 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:21 http://localhost:3142/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.45-8 [1540 kB] Get:22 http://localhost:3142/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:32 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get:46 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get:50 http://localhost:3142/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get:52 http://localhost:3142/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get:53 http://localhost:3142/debian unstable/main amd64 gcc-15-arm-linux-gnueabi-base amd64 15.2.0-4cross1 [53.0 kB] Get:54 http://localhost:3142/debian unstable/main amd64 cpp-15-arm-linux-gnueabi amd64 15.2.0-4cross1 [80.4 MB] Get:55 http://localhost:3142/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:15.2.0-4 [4448 B] Get:56 http://localhost:3142/debian unstable/main amd64 gcc-15-cross-base-ports all 15.2.0-4cross1 [48.4 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libc6-armel-cross all 2.41-11cross1 [942 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libgcc-s1-armel-cross all 15.2.0-4cross1 [38.9 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libgomp1-armel-cross all 15.2.0-4cross1 [113 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libatomic1-armel-cross all 15.2.0-4cross1 [9472 B] Get:61 http://localhost:3142/debian unstable/main amd64 libasan8-armel-cross all 15.2.0-4cross1 [2590 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libstdc++6-armel-cross all 15.2.0-4cross1 [561 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libubsan1-armel-cross all 15.2.0-4cross1 [1072 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev-armel-cross all 15.2.0-4cross1 [755 kB] Get:65 http://localhost:3142/debian unstable/main amd64 gcc-15-arm-linux-gnueabi amd64 15.2.0-4cross1 [88.1 MB] Get:66 http://localhost:3142/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:15.2.0-4 [1456 B] Get:67 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-armel-cross all 6.12.38-1cross1 [2430 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libc6-dev-armel-cross all 2.41-11cross1 [1358 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev-armel-cross all 15.2.0-4cross1 [2409 kB] Get:70 http://localhost:3142/debian unstable/main amd64 g++-15-arm-linux-gnueabi amd64 15.2.0-4cross1 [85.9 MB] Get:71 http://localhost:3142/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:15.2.0-4 [1204 B] Get:72 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-armel all 12.12 [3552 B] Get:73 http://localhost:3142/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get:76 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:79 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:80 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get:81 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:82 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get:83 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:84 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:85 http://localhost:3142/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB] Get:87 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB] Get:88 http://localhost:3142/debian unstable/main armel gcc-15-base armel 15.2.0-7 [53.3 kB] Get:89 http://localhost:3142/debian unstable/main armel libgcc-s1 armel 15.2.0-7 [39.0 kB] Get:90 http://localhost:3142/debian unstable/main armel libc6 armel 2.41-12 [2262 kB] Get:91 http://localhost:3142/debian unstable/main armel libasan8 armel 15.2.0-7 [2602 kB] Get:92 http://localhost:3142/debian unstable/main armel libatomic1 armel 15.2.0-7 [9712 B] Get:93 http://localhost:3142/debian unstable/main armel libcrypt1 armel 1:4.4.38-1 [97.4 kB] Get:94 http://localhost:3142/debian unstable/main armel libcrypt-dev armel 1:4.4.38-1 [127 kB] Get:95 http://localhost:3142/debian unstable/main armel libc6-dev armel 2.41-12 [1362 kB] Get:96 http://localhost:3142/debian unstable/main armel libgomp1 armel 15.2.0-7 [116 kB] Get:97 http://localhost:3142/debian unstable/main armel libstdc++6 armel 15.2.0-7 [608 kB] Get:98 http://localhost:3142/debian unstable/main armel libubsan1 armel 15.2.0-7 [1072 kB] Get:99 http://localhost:3142/debian unstable/main armel libgcc-15-dev armel 15.2.0-7 [760 kB] Get:100 http://localhost:3142/debian unstable/main armel libstdc++-15-dev armel 15.2.0-7 [2440 kB] Get:101 http://localhost:3142/debian unstable/main armel zlib1g armel 1:1.3.dfsg+really1.3.1-1+b1 [75.3 kB] Get:102 http://localhost:3142/debian unstable/main armel zlib1g-dev armel 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Preconfiguring packages ... Fetched 313 MB in 2s (206 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 12903 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../006-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package binutils-arm-linux-gnueabi. Preparing to unpack .../019-binutils-arm-linux-gnueabi_2.45-8_amd64.deb ... Unpacking binutils-arm-linux-gnueabi (2.45-8) ... Selecting previously unselected package cmake-data. Preparing to unpack .../020-cmake-data_4.1.1+really3.31.6-2_all.deb ... Unpacking cmake-data (4.1.1+really3.31.6-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../021-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../022-libarchive13t64_3.7.4-4+b1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-4+b1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../023-libnghttp3-9_1.12.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../024-libngtcp2-16_1.16.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.16.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../025-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../026-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../027-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../028-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../029-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../030-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../031-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../032-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../033-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../034-libsasl2-modules-db_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../035-libsasl2-2_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../036-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../037-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libngtcp2-crypto-ossl0:amd64. Preparing to unpack .../038-libngtcp2-crypto-ossl0_1.16.0-1_amd64.deb ... Unpacking libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../039-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../040-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../041-libp11-kit0_0.25.9-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.9-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../042-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../043-libgnutls30t64_3.8.10-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.10-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../044-librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../045-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../046-libcurl4t64_8.17.0~rc2-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.17.0~rc2-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../047-libjsoncpp26_1.9.6-4_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-4) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../048-librhash1_1.4.6-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.6-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../049-libuv1t64_1.51.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.51.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../050-cmake_4.1.1+really3.31.6-2_amd64.deb ... Unpacking cmake (4.1.1+really3.31.6-2) ... Selecting previously unselected package gcc-15-arm-linux-gnueabi-base:amd64. Preparing to unpack .../051-gcc-15-arm-linux-gnueabi-base_15.2.0-4cross1_amd64.deb ... Unpacking gcc-15-arm-linux-gnueabi-base:amd64 (15.2.0-4cross1) ... Selecting previously unselected package cpp-15-arm-linux-gnueabi. Preparing to unpack .../052-cpp-15-arm-linux-gnueabi_15.2.0-4cross1_amd64.deb ... Unpacking cpp-15-arm-linux-gnueabi (15.2.0-4cross1) ... Selecting previously unselected package cpp-arm-linux-gnueabi. Preparing to unpack .../053-cpp-arm-linux-gnueabi_4%3a15.2.0-4_amd64.deb ... Unpacking cpp-arm-linux-gnueabi (4:15.2.0-4) ... Selecting previously unselected package gcc-15-cross-base-ports. Preparing to unpack .../054-gcc-15-cross-base-ports_15.2.0-4cross1_all.deb ... Unpacking gcc-15-cross-base-ports (15.2.0-4cross1) ... Selecting previously unselected package libc6-armel-cross. Preparing to unpack .../055-libc6-armel-cross_2.41-11cross1_all.deb ... Unpacking libc6-armel-cross (2.41-11cross1) ... Selecting previously unselected package libgcc-s1-armel-cross. Preparing to unpack .../056-libgcc-s1-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libgcc-s1-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libgomp1-armel-cross. Preparing to unpack .../057-libgomp1-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libgomp1-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libatomic1-armel-cross. Preparing to unpack .../058-libatomic1-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libatomic1-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libasan8-armel-cross. Preparing to unpack .../059-libasan8-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libasan8-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libstdc++6-armel-cross. Preparing to unpack .../060-libstdc++6-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libstdc++6-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libubsan1-armel-cross. Preparing to unpack .../061-libubsan1-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libubsan1-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libgcc-15-dev-armel-cross. Preparing to unpack .../062-libgcc-15-dev-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libgcc-15-dev-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package gcc-15-arm-linux-gnueabi. Preparing to unpack .../063-gcc-15-arm-linux-gnueabi_15.2.0-4cross1_amd64.deb ... Unpacking gcc-15-arm-linux-gnueabi (15.2.0-4cross1) ... Selecting previously unselected package gcc-arm-linux-gnueabi. Preparing to unpack .../064-gcc-arm-linux-gnueabi_4%3a15.2.0-4_amd64.deb ... Unpacking gcc-arm-linux-gnueabi (4:15.2.0-4) ... Selecting previously unselected package linux-libc-dev-armel-cross. Preparing to unpack .../065-linux-libc-dev-armel-cross_6.12.38-1cross1_all.deb ... Unpacking linux-libc-dev-armel-cross (6.12.38-1cross1) ... Selecting previously unselected package libc6-dev-armel-cross. Preparing to unpack .../066-libc6-dev-armel-cross_2.41-11cross1_all.deb ... Unpacking libc6-dev-armel-cross (2.41-11cross1) ... Selecting previously unselected package libstdc++-15-dev-armel-cross. Preparing to unpack .../067-libstdc++-15-dev-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libstdc++-15-dev-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package g++-15-arm-linux-gnueabi. Preparing to unpack .../068-g++-15-arm-linux-gnueabi_15.2.0-4cross1_amd64.deb ... Unpacking g++-15-arm-linux-gnueabi (15.2.0-4cross1) ... Selecting previously unselected package g++-arm-linux-gnueabi. Preparing to unpack .../069-g++-arm-linux-gnueabi_4%3a15.2.0-4_amd64.deb ... Unpacking g++-arm-linux-gnueabi (4:15.2.0-4) ... Selecting previously unselected package crossbuild-essential-armel. Preparing to unpack .../070-crossbuild-essential-armel_12.12_all.deb ... Unpacking crossbuild-essential-armel (12.12) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../071-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../072-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../073-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../074-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../075-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../076-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../077-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../078-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../079-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package gettext. Preparing to unpack .../080-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../081-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../082-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../083-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package libfakeroot:amd64. Preparing to unpack .../084-libfakeroot_1.37.1.2-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.37.1.2-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../085-fakeroot_1.37.1.2-1_amd64.deb ... Unpacking fakeroot (1.37.1.2-1) ... Selecting previously unselected package gcc-15-base:armel. Preparing to unpack .../086-gcc-15-base_15.2.0-7_armel.deb ... Unpacking gcc-15-base:armel (15.2.0-7) ... Selecting previously unselected package libgcc-s1:armel. Preparing to unpack .../087-libgcc-s1_15.2.0-7_armel.deb ... Unpacking libgcc-s1:armel (15.2.0-7) ... Selecting previously unselected package libc6:armel. Preparing to unpack .../088-libc6_2.41-12_armel.deb ... Unpacking libc6:armel (2.41-12) ... Selecting previously unselected package libasan8:armel. Preparing to unpack .../089-libasan8_15.2.0-7_armel.deb ... Unpacking libasan8:armel (15.2.0-7) ... Selecting previously unselected package libatomic1:armel. Preparing to unpack .../090-libatomic1_15.2.0-7_armel.deb ... Unpacking libatomic1:armel (15.2.0-7) ... Selecting previously unselected package libcrypt1:armel. Preparing to unpack .../091-libcrypt1_1%3a4.4.38-1_armel.deb ... Unpacking libcrypt1:armel (1:4.4.38-1) ... Selecting previously unselected package libcrypt-dev:armel. Preparing to unpack .../092-libcrypt-dev_1%3a4.4.38-1_armel.deb ... Unpacking libcrypt-dev:armel (1:4.4.38-1) ... Selecting previously unselected package libc6-dev:armel. Preparing to unpack .../093-libc6-dev_2.41-12_armel.deb ... Unpacking libc6-dev:armel (2.41-12) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../094-libgomp1_15.2.0-7_armel.deb ... Unpacking libgomp1:armel (15.2.0-7) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../095-libstdc++6_15.2.0-7_armel.deb ... Unpacking libstdc++6:armel (15.2.0-7) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../096-libubsan1_15.2.0-7_armel.deb ... Unpacking libubsan1:armel (15.2.0-7) ... Selecting previously unselected package libgcc-15-dev:armel. Preparing to unpack .../097-libgcc-15-dev_15.2.0-7_armel.deb ... Unpacking libgcc-15-dev:armel (15.2.0-7) ... Selecting previously unselected package libstdc++-15-dev:armel. Preparing to unpack .../098-libstdc++-15-dev_15.2.0-7_armel.deb ... Unpacking libstdc++-15-dev:armel (15.2.0-7) ... Selecting previously unselected package zlib1g:armel. Preparing to unpack .../099-zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_armel.deb ... Unpacking zlib1g:armel (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package zlib1g-dev:armel. Preparing to unpack .../100-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_armel.deb ... Unpacking zlib1g-dev:armel (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../101-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up binutils-arm-linux-gnueabi (2.45-8) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up gcc-15-cross-base-ports (15.2.0-4cross1) ... Setting up libuv1t64:amd64 (1.51.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libfakeroot:amd64 (1.37.1.2-1) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up linux-libc-dev-armel-cross (6.12.38-1cross1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up fakeroot (1.37.1.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:amd64 (1.9.6-4) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up gcc-15-arm-linux-gnueabi-base:amd64 (15.2.0-4cross1) ... Setting up d-shlibs (0.109) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libc6-armel-cross (2.41-11cross1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libc6-dev-armel-cross (2.41-11cross1) ... Setting up gcc-15-base:armel (15.2.0-7) ... Setting up cpp-15-arm-linux-gnueabi (15.2.0-4cross1) ... Setting up libarchive13t64:amd64 (3.7.4-4+b1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgomp1-armel-cross (15.2.0-4cross1) ... Setting up libtool (2.5.4-7) ... Setting up libgcc-s1-armel-cross (15.2.0-4cross1) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libstdc++6-armel-cross (15.2.0-4cross1) ... Setting up libatomic1-armel-cross (15.2.0-4cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up cpp-arm-linux-gnueabi (4:15.2.0-4) ... Setting up libubsan1-armel-cross (15.2.0-4cross1) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libgnutls30t64:amd64 (3.8.10-2) ... Setting up libasan8-armel-cross (15.2.0-4cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgcc-15-dev-armel-cross (15.2.0-4cross1) ... Setting up gcc-15-arm-linux-gnueabi (15.2.0-4cross1) ... Setting up libcurl4t64:amd64 (8.17.0~rc2-1) ... Setting up debhelper (13.28) ... Setting up libstdc++-15-dev-armel-cross (15.2.0-4cross1) ... Setting up gcc-arm-linux-gnueabi (4:15.2.0-4) ... Setting up cmake (4.1.1+really3.31.6-2) ... Setting up g++-15-arm-linux-gnueabi (15.2.0-4cross1) ... Setting up g++-arm-linux-gnueabi (4:15.2.0-4) ... Setting up crossbuild-essential-armel (12.12) ... Setting up libgcc-s1:armel (15.2.0-7) ... Setting up libc6:armel (2.41-12) ... Setting up libasan8:armel (15.2.0-7) ... Setting up libstdc++6:armel (15.2.0-7) ... Setting up zlib1g:armel (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:armel (1:4.4.38-1) ... Setting up libgomp1:armel (15.2.0-7) ... Setting up libatomic1:armel (15.2.0-7) ... Setting up libubsan1:armel (15.2.0-7) ... Setting up libcrypt-dev:armel (1:4.4.38-1) ... Setting up libc6-dev:armel (2.41-12) ... Setting up libgcc-15-dev:armel (15.2.0-7) ... Setting up libstdc++-15-dev:armel (15.2.0-7) ... Setting up zlib1g-dev:armel (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64) Toolchain package versions: binutils_2.45-8 dpkg-dev_1.22.21 g++-15_15.2.0-7 gcc-15_15.2.0-7 libc6-dev_2.41-12 libstdc++-15-dev_15.2.0-7 libstdc++-15-dev-armel-cross_15.2.0-4cross1 libstdc++6_15.2.0-7 libstdc++6-armel-cross_15.2.0-4cross1 linux-libc-dev_6.16.12-2 Package versions: apt_3.1.9 apt-utils_3.1.9 autoconf_2.72-3.1 automake_1:1.18.1-2 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.3-1 binutils_2.45-8 binutils-arm-linux-gnueabi_2.45-8 binutils-common_2.45-8 binutils-x86-64-linux-gnu_2.45-8 bsdextrautils_2.41.2-4 bsdutils_1:2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 cmake_4.1.1+really3.31.6-2 cmake-data_4.1.1+really3.31.6-2 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-7 cpp-15-arm-linux-gnueabi_15.2.0-4cross1 cpp-15-x86-64-linux-gnu_15.2.0-7 cpp-arm-linux-gnueabi_4:15.2.0-4 cpp-x86-64-linux-gnu_4:15.2.0-4 crossbuild-essential-armel_12.12 d-shlibs_0.109 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-15_15.2.0-7 g++-15-arm-linux-gnueabi_15.2.0-4cross1 g++-15-x86-64-linux-gnu_15.2.0-7 g++-arm-linux-gnueabi_4:15.2.0-4 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-7 gcc-15-arm-linux-gnueabi_15.2.0-4cross1 gcc-15-arm-linux-gnueabi-base_15.2.0-4cross1 gcc-15-base_15.2.0-7 gcc-15-cross-base-ports_15.2.0-4cross1 gcc-15-x86-64-linux-gnu_15.2.0-7 gcc-arm-linux-gnueabi_4:15.2.0-4 gcc-x86-64-linux-gnu_4:15.2.0-4 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.9 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-4+b1 libasan8_15.2.0-7 libasan8-armel-cross_15.2.0-4cross1 libatomic1_15.2.0-7 libatomic1-armel-cross_15.2.0-4cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-8 libblkid1_2.41.2-4 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-armel-cross_2.41-11cross1 libc6-dev_2.41-12 libc6-dev-armel-cross_2.41-11cross1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-7 libcom-err2_1.47.2-3+b3 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-8 libctf0_2.45-8 libcurl4t64_8.17.0~rc2-1 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.280 libdebhelper-perl_13.28 libdpkg-perl_1.22.21 libelf1t64_0.193-3 libexpat1_2.7.3-1 libfakeroot_1.37.1.2-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-7 libgcc-15-dev-armel-cross_15.2.0-4cross1 libgcc-s1_15.2.0-7 libgcc-s1-armel-cross_15.2.0-4cross1 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgmp10_2:6.3.0+dfsg-5 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-7 libgomp1-armel-cross_15.2.0-4cross1 libgprofng0_2.45-8 libgssapi-krb5-2_1.21.3-5 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-7 libidn2-0_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-7 libjansson4_2.14-2+b3 libjsoncpp26_1.9.6-4 libk5crypto3_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5support0_1.21.3-5 libldap2_2.6.10+dfsg-1 liblsan0_15.2.0-7 liblz4-1_1.10.0-4 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.2-4 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libnghttp3-9_1.12.0-1 libngtcp2-16_1.16.0-1 libngtcp2-crypto-ossl0_1.16.0-1 libp11-kit0_0.25.9-2 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-6 libpipeline1_1.5.8-1 libproc2-0_2:4.0.4-9 libpsl5t64_0.21.2-1.1+b1 libquadmath0_15.2.0-7 librhash1_1.4.6-1 librtmp1_2.4+20151223.gitfa8646d.1-3 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libseccomp2_2.6.0-2 libselinux1_3.9-2 libsemanage-common_3.9-1 libsemanage2_3.9-1 libsepol2_3.9-2 libsframe2_2.45-8 libsmartcols1_2.41.2-4 libssh2-1t64_1.11.1-1 libssl3t64_3.5.4-1 libstdc++-15-dev_15.2.0-7 libstdc++-15-dev-armel-cross_15.2.0-4cross1 libstdc++6_15.2.0-7 libstdc++6-armel-cross_15.2.0-4cross1 libsystemd0_258.1-1 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-7 libtsan2_15.2.0-7 libubsan1_15.2.0-7 libubsan1-armel-cross_15.2.0-4cross1 libuchardet0_0.0.8-2 libudev1_258.1-1 libunistring5_1.3-2 libuuid1_2.41.2-4 libuv1t64_1.51.0-2 libxml2-16_2.14.6+dfsg-0.1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.16.12-2 linux-libc-dev-armel-cross_6.12.38-1cross1 login_1:4.16.0-2+really2.41.2-4 login.defs_1:4.18.0-2 m4_1.4.20-2 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 mount_2.41.2-4 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.4-1 passwd_1:4.18.0-2 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 po-debconf_1.0.21+nmu1 procps_2:4.0.4-9 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-3 sysvinit-utils_3.15-5 tar_1.35+dfsg-3.1 tzdata_2025b-5 util-linux_2.41.2-4 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: bifrost Binary: bifrost, libbifrost0, libbifrost-dev Architecture: any Version: 1.3.5-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Homepage: https://github.com/pmelsted/bifrost Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/bifrost Vcs-Git: https://salsa.debian.org/med-team/bifrost.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev Package-List: bifrost deb python optional arch=any libbifrost-dev deb libdevel optional arch=any libbifrost0 deb libs optional arch=any Checksums-Sha1: e9b886fb1b2b0c9d0de3c1c6b1214d34a1800535 356701 bifrost_1.3.5.orig.tar.gz dbc45b57d0e88ca3c1f6ae0b3757c809f81cb177 253928 bifrost_1.3.5-2.debian.tar.xz Checksums-Sha256: e1b2491328b0cc1a32e433a8a9780f05547fa4b8d674b58abdda9ac8809f5341 356701 bifrost_1.3.5.orig.tar.gz ac1de7709581a84c93417fd6e59bb8b4f35e790223cf7a44801f7705ec56f6fe 253928 bifrost_1.3.5-2.debian.tar.xz Files: 99d8b5ca110be5313dd33d2d343f7a26 356701 bifrost_1.3.5.orig.tar.gz 5c6e069544df8f0e0c8a94c63d97a401 253928 bifrost_1.3.5-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmjwtukRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGxVA//bl6PGPfTcfyptT3StXlZPqKs4jzIKE3b Xw+/Vhqi7Y/EMubb1pPHChAlQM5dziqwtYOHmz5FibpW4aNfRf8Wm+g++b1ajQ90 C0k44Oa7NCJ+kJJeIqIiOauEewY8wnCDNSbGd8hLXSTyTJypklp2SwFYnjMsQO4Y kE+MIJiQVnvRhpiYQXSIJ8gGnZuDNiwHuadDw1B17LtRLtwnupSMIwYLFboLPtJt IutKBFa6fZVLThK4ZKQxilcp3IeNLiQBFLHw7hzT+1jCuigGjVCJcD5VBKVHuQ2r SL78DK7L/hMiC2bnxPYwN+17n8347Dzc6NA3xLCdTIHx+prJmzkTcRv9NO1Ey7YF 3Ag/7nXnlLsCB1Ni9WP3fcKWe7oG5qQemN31hKpeGDa8guHI5iLbkvKD53woKhiS u7JoO19eF1VRwlRerFdw23A8IYJyI/XiOOspDz3c6DTlonomaWF/mH3Pkzgr3pN9 PBJRFT73VkVjiVuHW0DZnO7MAIQGh8ua1M1AbckhvO+DMY60AKxCkK+ih6lh0KzQ oylWOv1IWNnV5kx3D5kyKSApc8QBMgTjCsEA2N/4jZKYcZFusMV/3hmsl+l0fAw2 qI18OBA8Yma/bWFJ0A2vG9MiOw8ClxU6xqupcACv4T2lXpvp1diH4JqLfN0e2kU7 APwkVSSwk2E= =llH/ -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./bifrost_1.3.5-2.dsc: no acceptable signature found dpkg-source: info: extracting bifrost in /<> dpkg-source: info: unpacking bifrost_1.3.5.orig.tar.gz dpkg-source: info: unpacking bifrost_1.3.5-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_soname.patch dpkg-source: info: applying 0002-Fix-compilation-error-with-custom-unitig-data.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.Ur9scJcj8v/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-50d1b4cc-96e7-444e-a3eb-bd03151e7234 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package bifrost dpkg-buildpackage: info: source version 1.3.5-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DCOMPILATION_ARCH=OFF -DCMAKE_POLICY_VERSION_MINIMUM=3.5 cd obj-arm-linux-gnueabi && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/arm-linux-gnueabi-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=armv7l -DCMAKE_C_COMPILER=arm-linux-gnueabi-gcc -DCMAKE_CXX_COMPILER=arm-linux-gnueabi-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabi-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabi-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/arm-linux-gnueabi-qmake -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabi -DBUILD_TESTING:BOOL=OFF -DCOMPILATION_ARCH=OFF -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/arm-linux-gnueabi-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabi-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE Disabling native architecture compilation (including AVX2) Build type: Release Maximum k-mer size: 31 Maximum g-mer size: 31 -- Found ZLIB: /usr/lib/arm-linux-gnueabi/libz.so (found version "1.3.1") -- Configuring done (0.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-arm-linux-gnueabi make[1]: Leaving directory '/<>' dh_auto_build -a cd obj-arm-linux-gnueabi && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-arm-linux-gnueabi' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabi/CMakeFiles /<>/obj-arm-linux-gnueabi//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabi' make -f src/CMakeFiles/bifrost_static.dir/build.make src/CMakeFiles/bifrost_static.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/src /<>/obj-arm-linux-gnueabi/src/CMakeFiles/bifrost_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f src/CMakeFiles/bifrost_static.dir/build.make src/CMakeFiles/bifrost_static.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 3%] Building CXX object src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o cd /<>/obj-arm-linux-gnueabi/src && /usr/bin/arm-linux-gnueabi-g++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_static.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -c /<>/src/Bifrost.cpp In file included from /<>/src/BlockedBloomFilter.hpp:14, from /<>/src/CompactedDBG.hpp:27, from /<>/src/Bifrost.cpp:1: /<>/src/fastmod.h: In function ‘uint64_t fastmod::mul128_u32(uint64_t, uint32_t)’: /<>/src/fastmod.h:46:12: error: ‘__uint128_t’ was not declared in this scope; did you mean ‘__uint8_t’? 46 | return ((__uint128_t)lowbits * d) >> 64; | ^~~~~~~~~~~ | __uint8_t /<>/src/fastmod.h:46:24: error: expected ‘)’ before ‘lowbits’ 46 | return ((__uint128_t)lowbits * d) >> 64; | ~ ^~~~~~~ | ) /<>/src/fastmod.h: In function ‘uint64_t fastmod::mul128_s32(uint64_t, int32_t)’: /<>/src/fastmod.h:50:12: error: ‘__int128_t’ was not declared in this scope; did you mean ‘__int128__’? 50 | return ((__int128_t)lowbits * d) >> 64; | ^~~~~~~~~~ | __int128__ /<>/src/fastmod.h:50:23: error: expected ‘)’ before ‘lowbits’ 50 | return ((__int128_t)lowbits * d) >> 64; | ~ ^~~~~~~ | ) /<>/src/fastmod.h: At global scope: /<>/src/fastmod.h:23:21: warning: inline variables are only available with ‘-std=c++17’ or ‘-std=gnu++17’ [-Wc++17-extensions] 23 | #define FASTMOD_API inline | ^~~~~~ /<>/src/fastmod.h:54:1: note: in expansion of macro ‘FASTMOD_API’ 54 | FASTMOD_API uint64_t mul128_u64(__uint128_t lowbits, uint64_t d) { | ^~~~~~~~~~~ /<>/src/fastmod.h:54:33: error: ‘__uint128_t’ was not declared in this scope; did you mean ‘__uint8_t’? 54 | FASTMOD_API uint64_t mul128_u64(__uint128_t lowbits, uint64_t d) { | ^~~~~~~~~~~ | __uint8_t /<>/src/fastmod.h:54:63: error: expected primary-expression before ‘d’ 54 | FASTMOD_API uint64_t mul128_u64(__uint128_t lowbits, uint64_t d) { | ^ /<>/src/fastmod.h:54:64: error: expression list treated as compound expression in initializer [-fpermissive] 54 | FASTMOD_API uint64_t mul128_u64(__uint128_t lowbits, uint64_t d) { | ^ /<>/src/fastmod.h:139:13: error: ‘__uint128_t’ does not name a type; did you mean ‘__uint8_t’? 139 | FASTMOD_API __uint128_t computeM_u64(uint64_t d) { | ^~~~~~~~~~~ | __uint8_t /<>/src/fastmod.h:149:13: error: ‘__uint128_t’ does not name a type; did you mean ‘__uint8_t’? 149 | FASTMOD_API __uint128_t computeM_s64(int64_t d) { | ^~~~~~~~~~~ | __uint8_t /<>/src/fastmod.h:161:46: error: ‘__uint128_t’ has not been declared; did you mean ‘__uint8_t’? 161 | FASTMOD_API uint64_t fastmod_u64(uint64_t a, __uint128_t M, uint64_t d) { | ^~~~~~~~~~~ | __uint8_t /<>/src/fastmod.h: In function ‘uint64_t fastmod::fastmod_u64(uint64_t, int, uint64_t)’: /<>/src/fastmod.h:162:3: error: ‘__uint128_t’ was not declared in this scope; did you mean ‘__uint8_t’? 162 | __uint128_t lowbits = M * a; | ^~~~~~~~~~~ | __uint8_t /<>/src/fastmod.h:163:21: error: ‘lowbits’ was not declared in this scope 163 | return mul128_u64(lowbits, d); | ^~~~~~~ /<>/src/fastmod.h:163:20: error: ‘fastmod::mul128_u64’ cannot be used as a function 163 | return mul128_u64(lowbits, d); | ~~~~~~~~~~^~~~~~~~~~~~ /<>/src/fastmod.h: At global scope: /<>/src/fastmod.h:166:46: error: ‘__uint128_t’ has not been declared; did you mean ‘__uint8_t’? 166 | FASTMOD_API uint64_t fastdiv_u64(uint64_t a, __uint128_t M) { | ^~~~~~~~~~~ | __uint8_t /<>/src/fastmod.h: In function ‘uint64_t fastmod::fastdiv_u64(uint64_t, int)’: /<>/src/fastmod.h:167:20: error: ‘fastmod::mul128_u64’ cannot be used as a function 167 | return mul128_u64(M, a); | ~~~~~~~~~~^~~~~~ /<>/src/BlockedBloomFilter.hpp: At global scope: /<>/src/BlockedBloomFilter.hpp:145:9: error: ‘__uint128_t’ does not name a type; did you mean ‘__uint8_t’? 145 | __uint128_t M_u64; // for fast division/modulo | ^~~~~~~~~~~ | __uint8_t /<>/src/BlockedBloomFilter.hpp:289:9: error: ‘__uint128_t’ does not name a type; did you mean ‘__uint8_t’? 289 | __uint128_t M_u64; // for fast division/modulo | ^~~~~~~~~~~ | __uint8_t In file included from /<>/src/CompactedDBG.hpp:28: /<>/src/Common.hpp: In function ‘bool isDNA(char)’: /<>/src/Common.hpp:48:47: error: narrowing conversion of ‘4504192333906058’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] 48 | static const size_t DNAbits[4] = {0x0ULL, 0x10008A0010008AULL, 0x0ULL, 0x0ULL}; | ^~~~~~~~~~~~~~~~~~~ /<>/src/Common.hpp: In function ‘size_t rndup(size_t)’: /<>/src/Common.hpp:192:12: warning: right shift count >= width of type [-Wshift-count-overflow] 192 | v |= v >> 32; | ~~^~~~~ /<>/src/Common.hpp: At global scope: /<>/src/Common.hpp:198:21: error: redefinition of ‘uint32_t rndup(uint32_t)’ 198 | BFG_INLINE uint32_t rndup(uint32_t v) { | ^~~~~ /<>/src/Common.hpp:184:19: note: ‘size_t rndup(size_t)’ previously defined here 184 | BFG_INLINE size_t rndup(size_t v) { | ^~~~~ In file included from /<>/src/FASTX_Parser.hpp:17, from /<>/src/File_Parser.hpp:10, from /<>/src/CompactedDBG.hpp:29: /<>/src/FASTX_Parser.hpp: In function ‘int64_t ks_getuntil2(kstream_t*, int, kstring_t*, int*, int)’: /<>/src/kseq.h:95:105: warning: right shift count >= width of type [-Wshift-count-overflow] 95 | #define kroundup64(x) (--(x), (x)|=(x)>>1, (x)|=(x)>>2, (x)|=(x)>>4, (x)|=(x)>>8, (x)|=(x)>>16, (x)|=(x)>>32, ++(x)) | ~~~^~~~ /<>/src/kseq.h:130:33: note: in expansion of macro ‘kroundup64’ 130 | kroundup64(str->m); \ | ^~~~~~~~~~ /<>/src/kseq.h:157:9: note: in expansion of macro ‘__KS_GETUNTIL’ 157 | __KS_GETUNTIL(__read, __bufsize) | ^~~~~~~~~~~~~ /<>/src/kseq.h:234:9: note: in expansion of macro ‘KSTREAM_INIT’ 234 | KSTREAM_INIT(type_t, __read, 16384) \ | ^~~~~~~~~~~~ /<>/src/kseq.h:239:35: note: in expansion of macro ‘KSEQ_INIT2’ 239 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ /<>/src/FASTX_Parser.hpp:18:1: note: in expansion of macro ‘KSEQ_INIT’ 18 | KSEQ_INIT(gzFile, gzread); | ^~~~~~~~~ /<>/src/FASTX_Parser.hpp: In function ‘int64_t kseq_read(kseq_t*)’: /<>/src/kseq.h:95:105: warning: right shift count >= width of type [-Wshift-count-overflow] 95 | #define kroundup64(x) (--(x), (x)|=(x)>>1, (x)|=(x)>>2, (x)|=(x)>>4, (x)|=(x)>>8, (x)|=(x)>>16, (x)|=(x)>>32, ++(x)) | ~~~^~~~ /<>/src/kseq.h:207:25: note: in expansion of macro ‘kroundup64’ 207 | kroundup64(seq->seq.m); /* rounded to the next closest 2^k */ \ | ^~~~~~~~~~ /<>/src/kseq.h:237:9: note: in expansion of macro ‘__KSEQ_READ’ 237 | __KSEQ_READ(SCOPE) | ^~~~~~~~~~~ /<>/src/kseq.h:239:35: note: in expansion of macro ‘KSEQ_INIT2’ 239 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ /<>/src/FASTX_Parser.hpp:18:1: note: in expansion of macro ‘KSEQ_INIT’ 18 | KSEQ_INIT(gzFile, gzread); | ^~~~~~~~~ /<>/src/File_Parser.hpp: In static member function ‘static int FileParser::getFileFormat(const char*)’: /<>/src/File_Parser.hpp:230:64: warning: right shift count >= width of type [-Wshift-count-overflow] 230 | else if ((reinterpret_cast(buffer)[0] >> 32) == BFG_GRAPHBIN_FORMAT_HEADER) ret_v = 3; // BFG | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /<>/src/File_Parser.hpp:231:64: warning: right shift count >= width of type [-Wshift-count-overflow] 231 | else if ((reinterpret_cast(buffer)[0] >> 32) == BFG_METABIN_FORMAT_HEADER) ret_v = 4; // BFI | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /<>/src/CompactedDBG.hpp:34: /<>/src/KmerHashTable.hpp: At global scope: /<>/src/KmerHashTable.hpp:19:5: error: ‘__uint128_t’ does not name a type; did you mean ‘__uint8_t’? [-Wtemplate-body] 19 | __uint128_t M_u64; | ^~~~~~~~~~~ | __uint8_t /<>/src/KmerHashTable.hpp: In copy constructor ‘KmerHashTable::KmerHashTable(const KmerHashTable&)’: /<>/src/KmerHashTable.hpp:153:113: error: class ‘KmerHashTable’ does not have any field named ‘M_u64’ [-Wtemplate-body] 153 | size_(o.size_), pop(o.pop), sum_psl(o.sum_psl), max_psl(o.max_psl), M_u64(o.M_u64) { | ^~~~~ /<>/src/KmerHashTable.hpp:153:121: error: ‘const struct KmerHashTable’ has no member named ‘M_u64’ [-Wtemplate-body] 153 | size_(o.size_), pop(o.pop), sum_psl(o.sum_psl), max_psl(o.max_psl), M_u64(o.M_u64) { | ^~~~~ /<>/src/KmerHashTable.hpp: In constructor ‘KmerHashTable::KmerHashTable(KmerHashTable&&)’: /<>/src/KmerHashTable.hpp:167:41: error: class ‘KmerHashTable’ does not have any field named ‘M_u64’ [-Wtemplate-body] 167 | M_u64(o.M_u64), max_ratio_occupancy(o.max_ratio_occupancy) { | ^~~~~ /<>/src/KmerHashTable.hpp:167:49: error: ‘struct KmerHashTable’ has no member named ‘M_u64’ [-Wtemplate-body] 167 | M_u64(o.M_u64), max_ratio_occupancy(o.max_ratio_occupancy) { | ^~~~~ /<>/src/KmerHashTable.hpp: In member function ‘KmerHashTable& KmerHashTable::operator=(const KmerHashTable&)’: /<>/src/KmerHashTable.hpp:186:13: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 186 | M_u64 = o.M_u64; | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp:186:23: error: ‘const struct KmerHashTable’ has no member named ‘M_u64’ [-Wtemplate-body] 186 | M_u64 = o.M_u64; | ^~~~~ /<>/src/KmerHashTable.hpp: In member function ‘KmerHashTable& KmerHashTable::operator=(KmerHashTable&&)’: /<>/src/KmerHashTable.hpp:212:13: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 212 | M_u64 = o.M_u64; | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp:212:23: error: ‘struct KmerHashTable’ has no member named ‘M_u64’ [-Wtemplate-body] 212 | M_u64 = o.M_u64; | ^~~~~ /<>/src/KmerHashTable.hpp: In member function ‘void KmerHashTable::clear()’: /<>/src/KmerHashTable.hpp:249:9: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 249 | M_u64 = 0; | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp: In member function ‘KmerHashTable::iterator KmerHashTable::find(const Kmer&)’: /<>/src/KmerHashTable.hpp:261:57: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 261 | size_t h = fastmod::fastmod_u64(key.hash(), M_u64, size_); | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp: In member function ‘KmerHashTable::const_iterator KmerHashTable::find(const Kmer&) const’: /<>/src/KmerHashTable.hpp:326:57: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 326 | size_t h = fastmod::fastmod_u64(key.hash(), M_u64, size_); | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp: In member function ‘size_t KmerHashTable::erase(const_iterator)’: /<>/src/KmerHashTable.hpp:412:80: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 412 | const size_t h = fastmod::fastmod_u64(table_keys[it.h].hash(), M_u64, size_); | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp:430:110: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 430 | while ((i != size_) && !table_keys[j2].isEmpty() && (fastmod::fastmod_u64(table_keys[j2].hash(), M_u64, size_) != j2)) { | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp: In member function ‘std::pair::iterator_, bool> KmerHashTable::insert(const Kmer&, const T&)’: /<>/src/KmerHashTable.hpp:469:53: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 469 | size_t h = fastmod::fastmod_u64(key.hash(), M_u64, size_); | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp: In member function ‘std::pair::iterator_, bool> KmerHashTable::insert(Kmer&&, T&&)’: /<>/src/KmerHashTable.hpp:569:53: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 569 | size_t h = fastmod::fastmod_u64(key.hash(), M_u64, size_); | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp: In member function ‘void KmerHashTable::recomputeMaxPSL(size_t)’: /<>/src/KmerHashTable.hpp:664:85: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 664 | const size_t h = fastmod::fastmod_u64(table_keys[i].hash(), M_u64, size_); | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp: In lambda function: /<>/src/KmerHashTable.hpp:694:97: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 694 | const size_t h = fastmod::fastmod_u64(table_keys[i].hash(), M_u64, size_); | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp: In member function ‘void KmerHashTable::init_tables(size_t)’: /<>/src/KmerHashTable.hpp:776:9: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 776 | M_u64 = fastmod::computeM_u64(size_); | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp:776:26: error: ‘computeM_u64’ is not a member of ‘fastmod’; did you mean ‘computeM_u32’? [-Wtemplate-body] 776 | M_u64 = fastmod::computeM_u64(size_); | ^~~~~~~~~~~~ | computeM_u32 /<>/src/KmerHashTable.hpp: In member function ‘void KmerHashTable::reserve(size_t)’: /<>/src/KmerHashTable.hpp:804:13: error: ‘M_u64’ was not declared in this scope; did you mean ‘M_Ef64’? [-Wtemplate-body] 804 | M_u64 = fastmod::computeM_u64(size_); | ^~~~~ | M_Ef64 /<>/src/KmerHashTable.hpp:804:30: error: ‘computeM_u64’ is not a member of ‘fastmod’; did you mean ‘computeM_u32’? [-Wtemplate-body] 804 | M_u64 = fastmod::computeM_u64(size_); | ^~~~~~~~~~~~ | computeM_u32 In file included from /<>/src/CompactedDBG.hpp:36: /<>/src/KmerStream.hpp: In member function ‘std::pair ReadQualityHasherMinimizer::update(const char*, size_t, const char*, size_t)’: /<>/src/KmerStream.hpp:119:49: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 119 | size_t i = 0, j = 0, prev_pos_min = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerStream.hpp: In member function ‘std::pair ReadQualityHasherMinimizer::update(const char*, const char*, size_t)’: /<>/src/KmerStream.hpp:201:57: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 201 | size_t i = 0, j = 0, prev_pos_min = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerStream.hpp: In member function ‘std::pair ReadQualityHasherMinimizer::update_p(const char*, size_t, const char*, size_t)’: /<>/src/KmerStream.hpp:270:49: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 270 | size_t i = 0, j = 0, prev_pos_min = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerStream.hpp: In member function ‘std::pair ReadQualityHasherMinimizer::update_p(const char*, const char*, size_t)’: /<>/src/KmerStream.hpp:366:57: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 366 | size_t i = 0, j = 0, prev_pos_min = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerStream.hpp: In member function ‘std::pair ReadHasherMinimizer::update(const char*, size_t, const char*, size_t)’: /<>/src/KmerStream.hpp:577:49: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 577 | size_t i = 0, j = 0, prev_pos_min = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerStream.hpp: In member function ‘std::pair ReadHasherMinimizer::update(const char*, size_t)’: /<>/src/KmerStream.hpp:654:57: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 654 | size_t i = 0, j = 0, prev_pos_min = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerStream.hpp: In member function ‘std::pair ReadHasherMinimizer::update_p(const char*, size_t, const char*, size_t)’: /<>/src/KmerStream.hpp:722:49: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 722 | size_t i = 0, j = 0, prev_pos_min = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerStream.hpp: In member function ‘std::pair ReadHasherMinimizer::update_p(const char*, size_t)’: /<>/src/KmerStream.hpp:817:57: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 817 | size_t i = 0, j = 0, prev_pos_min = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/CompactedDBG.hpp:39: /<>/src/MinimizerIndex.hpp: At global scope: /<>/src/MinimizerIndex.hpp:220:9: error: ‘__uint128_t’ does not name a type; did you mean ‘__uint8_t’? 220 | __uint128_t M_u64; | ^~~~~~~~~~~ | __uint8_t In file included from /<>/src/CompactedDBG.hpp:900: /<>/src/CompactedDBG.tcc: In member function ‘bool CompactedDBG::build(CDBG_Build_opt&)’: /<>/src/CompactedDBG.tcc:653:38: error: no matching function for call to ‘max(long unsigned int, size_t)’ [-Wtemplate-body] 653 | nb_unique_kmers = max(1UL, kms.KmerF0()); | ~~~^~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:653:38: note: there are 4 candidates In file included from /usr/arm-linux-gnueabi/include/c++/15/string:53, from /usr/arm-linux-gnueabi/include/c++/15/bits/locale_classes.h:42, from /usr/arm-linux-gnueabi/include/c++/15/bits/ios_base.h:43, from /usr/arm-linux-gnueabi/include/c++/15/ios:46, from /usr/arm-linux-gnueabi/include/c++/15/bits/ostream.h:43, from /usr/arm-linux-gnueabi/include/c++/15/ostream:42, from /usr/arm-linux-gnueabi/include/c++/15/iostream:43, from /<>/src/CompactedDBG.hpp:12: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:258:5: note: candidate 1: ‘template const _Tp& std::max(const _Tp&, const _Tp&)’ 258 | max(const _Tp& __a, const _Tp& __b) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:258:5: note: template argument deduction/substitution failed: /<>/src/CompactedDBG.tcc:653:38: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’}) 653 | nb_unique_kmers = max(1UL, kms.KmerF0()); | ~~~^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:304:5: note: candidate 2: ‘template const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 304 | max(const _Tp& __a, const _Tp& __b, _Compare __comp) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:304:5: note: candidate expects 3 arguments, 2 provided In file included from /usr/arm-linux-gnueabi/include/c++/15/algorithm:63, from /<>/src/Common.hpp:5: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5784:5: note: candidate 3: ‘template _Tp std::max(initializer_list<_Tp>)’ 5784 | max(initializer_list<_Tp> __l) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5784:5: note: candidate expects 1 argument, 2 provided /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5794:5: note: candidate 4: ‘template _Tp std::max(initializer_list<_Tp>, _Compare)’ 5794 | max(initializer_list<_Tp> __l, _Compare __comp) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5794:5: note: template argument deduction/substitution failed: /<>/src/CompactedDBG.tcc:653:38: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 653 | nb_unique_kmers = max(1UL, kms.KmerF0()); | ~~~^~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:654:43: error: no matching function for call to ‘max(long unsigned int, size_t)’ [-Wtemplate-body] 654 | nb_unique_minimizers = max(1UL, kms.MinimizerF0()); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:654:43: note: there are 4 candidates /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:258:5: note: candidate 1: ‘template const _Tp& std::max(const _Tp&, const _Tp&)’ 258 | max(const _Tp& __a, const _Tp& __b) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:258:5: note: template argument deduction/substitution failed: /<>/src/CompactedDBG.tcc:654:43: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’}) 654 | nb_unique_minimizers = max(1UL, kms.MinimizerF0()); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:304:5: note: candidate 2: ‘template const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 304 | max(const _Tp& __a, const _Tp& __b, _Compare __comp) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:304:5: note: candidate expects 3 arguments, 2 provided /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5784:5: note: candidate 3: ‘template _Tp std::max(initializer_list<_Tp>)’ 5784 | max(initializer_list<_Tp> __l) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5784:5: note: candidate expects 1 argument, 2 provided /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5794:5: note: candidate 4: ‘template _Tp std::max(initializer_list<_Tp>, _Compare)’ 5794 | max(initializer_list<_Tp> __l, _Compare __comp) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5794:5: note: template argument deduction/substitution failed: /<>/src/CompactedDBG.tcc:654:43: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 654 | nb_unique_minimizers = max(1UL, kms.MinimizerF0()); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:655:63: error: no matching function for call to ‘max(long unsigned int, size_t)’ [-Wtemplate-body] 655 | nb_non_unique_kmers = reference_mode ? 0 : max(1UL, nb_unique_kmers - min(nb_unique_kmers, kms.Kmerf1())); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:655:63: note: there are 4 candidates /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:258:5: note: candidate 1: ‘template const _Tp& std::max(const _Tp&, const _Tp&)’ 258 | max(const _Tp& __a, const _Tp& __b) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:258:5: note: template argument deduction/substitution failed: /<>/src/CompactedDBG.tcc:655:63: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’}) 655 | nb_non_unique_kmers = reference_mode ? 0 : max(1UL, nb_unique_kmers - min(nb_unique_kmers, kms.Kmerf1())); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:304:5: note: candidate 2: ‘template const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 304 | max(const _Tp& __a, const _Tp& __b, _Compare __comp) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:304:5: note: candidate expects 3 arguments, 2 provided /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5784:5: note: candidate 3: ‘template _Tp std::max(initializer_list<_Tp>)’ 5784 | max(initializer_list<_Tp> __l) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5784:5: note: candidate expects 1 argument, 2 provided /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5794:5: note: candidate 4: ‘template _Tp std::max(initializer_list<_Tp>, _Compare)’ 5794 | max(initializer_list<_Tp> __l, _Compare __comp) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5794:5: note: template argument deduction/substitution failed: /<>/src/CompactedDBG.tcc:655:63: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 655 | nb_non_unique_kmers = reference_mode ? 0 : max(1UL, nb_unique_kmers - min(nb_unique_kmers, kms.Kmerf1())); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:656:68: error: no matching function for call to ‘max(long unsigned int, size_t)’ [-Wtemplate-body] 656 | nb_non_unique_minimizers = reference_mode ? 0 : max(1UL, nb_unique_minimizers - min(nb_unique_minimizers, kms.Minimizerf1())); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:656:68: note: there are 4 candidates /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:258:5: note: candidate 1: ‘template const _Tp& std::max(const _Tp&, const _Tp&)’ 258 | max(const _Tp& __a, const _Tp& __b) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:258:5: note: template argument deduction/substitution failed: /<>/src/CompactedDBG.tcc:656:68: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’}) 656 | nb_non_unique_minimizers = reference_mode ? 0 : max(1UL, nb_unique_minimizers - min(nb_unique_minimizers, kms.Minimizerf1())); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:304:5: note: candidate 2: ‘template const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 304 | max(const _Tp& __a, const _Tp& __b, _Compare __comp) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:304:5: note: candidate expects 3 arguments, 2 provided /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5784:5: note: candidate 3: ‘template _Tp std::max(initializer_list<_Tp>)’ 5784 | max(initializer_list<_Tp> __l) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5784:5: note: candidate expects 1 argument, 2 provided /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5794:5: note: candidate 4: ‘template _Tp std::max(initializer_list<_Tp>, _Compare)’ 5794 | max(initializer_list<_Tp> __l, _Compare __comp) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5794:5: note: template argument deduction/substitution failed: /<>/src/CompactedDBG.tcc:656:68: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 656 | nb_non_unique_minimizers = reference_mode ? 0 : max(1UL, nb_unique_minimizers - min(nb_unique_minimizers, kms.Minimizerf1())); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In member function ‘const_UnitigMap CompactedDBG::find(const char*, size_t, const minHashIterator&, bool) const’: /<>/src/CompactedDBG.tcc:768:43: warning: right shift count >= width of type [-Wshift-count-overflow] 768 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In member function ‘UnitigMap CompactedDBG::find(const char*, size_t, const minHashIterator&, bool)’: /<>/src/CompactedDBG.tcc:892:43: warning: right shift count >= width of type [-Wshift-count-overflow] 892 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In member function ‘const_UnitigMap CompactedDBG::find(const Kmer&, bool) const’: /<>/src/CompactedDBG.tcc:1016:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1016 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In member function ‘UnitigMap CompactedDBG::find(const Kmer&, bool)’: /<>/src/CompactedDBG.tcc:1219:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1219 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In member function ‘std::vector > CompactedDBG::findPredecessors(const Kmer&, bool) const’: /<>/src/CompactedDBG.tcc:1342:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1342 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In member function ‘std::vector > CompactedDBG::findPredecessors(const Kmer&, bool)’: /<>/src/CompactedDBG.tcc:1498:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1498 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In member function ‘std::vector > CompactedDBG::findSuccessors(const Kmer&, size_t, bool) const’: /<>/src/CompactedDBG.tcc:1658:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1658 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In member function ‘std::vector > CompactedDBG::findSuccessors(const Kmer&, size_t, bool)’: /<>/src/CompactedDBG.tcc:1848:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1848 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In member function ‘bool CompactedDBG::addUnitig(const std::string&, size_t)’: /<>/src/CompactedDBG.tcc:4724:38: warning: left shift count >= width of type [-Wshift-count-overflow] 4724 | size_t pos_id_unitig = id_unitig << 32; | ~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc:4726:40: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744071562067968’ to ‘2147483648’ [-Woverflow] 4726 | const size_t mask = MASK_CONTIG_ID | MASK_CONTIG_TYPE; /<>/src/CompactedDBG.tcc: In member function ‘void CompactedDBG::moveToAbundant()’: /<>/src/CompactedDBG.tcc:4911:92: warning: right shift count >= width of type [-Wshift-count-overflow] 4911 | if (static_cast(unitig_id_pos & MASK_CONTIG_TYPE) && ((unitig_id_pos >> 32) != RESERVED_ID)) v_km_rm.push_back(unitig_id_pos >> 32); | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc:4911:148: warning: right shift count >= width of type [-Wshift-count-overflow] 4911 | if (static_cast(unitig_id_pos & MASK_CONTIG_TYPE) && ((unitig_id_pos >> 32) != RESERVED_ID)) v_km_rm.push_back(unitig_id_pos >> 32); | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In member function ‘bool CompactedDBG::addUnitig(const std::string&, size_t, size_t, size_t)’: /<>/src/CompactedDBG.tcc:5118:49: warning: left shift count >= width of type [-Wshift-count-overflow] 5118 | const size_t pos_id_unitig_r = (id_unitig_r << 32) | ((static_cast(!is_short_r) - 1) & MASK_CONTIG_TYPE); | ~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc:5121:40: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744071562067968’ to ‘2147483648’ [-Woverflow] 5121 | const size_t mask = MASK_CONTIG_ID | MASK_CONTIG_TYPE; /<>/src/CompactedDBG.tcc:5123:38: warning: left shift count >= width of type [-Wshift-count-overflow] 5123 | size_t pos_id_unitig = id_unitig << 32; | ~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In member function ‘void CompactedDBG::swapUnitigs(bool, size_t, size_t)’: /<>/src/CompactedDBG.tcc:5314:40: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744071562067968’ to ‘2147483648’ [-Woverflow] 5314 | const size_t mask = MASK_CONTIG_ID | MASK_CONTIG_TYPE; /<>/src/CompactedDBG.tcc:5316:37: warning: left shift count >= width of type [-Wshift-count-overflow] 5316 | size_t shift_id_unitig_a = id_a << 32; | ~~~~~^~~~~ /<>/src/CompactedDBG.tcc:5317:37: warning: left shift count >= width of type [-Wshift-count-overflow] 5317 | size_t shift_id_unitig_b = id_b << 32; | ~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In member function ‘typename std::enable_if<(! is_void), void>::type CompactedDBG::deleteUnitig_(bool, bool, size_t, bool)’: /<>/src/CompactedDBG.tcc:6009:42: warning: left shift count >= width of type [-Wshift-count-overflow] 6009 | size_t pos_id_unitig = id_unitig << 32; | ~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc:6010:44: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744071562067968’ to ‘2147483648’ [-Woverflow] 6010 | const size_t mask = MASK_CONTIG_ID | MASK_CONTIG_TYPE; /<>/src/CompactedDBG.tcc: In member function ‘typename std::enable_if::type CompactedDBG::deleteUnitig_(bool, bool, size_t, bool)’: /<>/src/CompactedDBG.tcc:6169:42: warning: left shift count >= width of type [-Wshift-count-overflow] 6169 | size_t pos_id_unitig = id_unitig << 32; | ~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc:6170:44: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744071562067968’ to ‘2147483648’ [-Woverflow] 6170 | const size_t mask = MASK_CONTIG_ID | MASK_CONTIG_TYPE; /<>/src/CompactedDBG.tcc: In member function ‘void CompactedDBG::deleteUnitig_(bool, bool, size_t, const std::string&)’: /<>/src/CompactedDBG.tcc:6314:42: warning: left shift count >= width of type [-Wshift-count-overflow] 6314 | size_t pos_id_unitig = id_unitig << 32; | ~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc:6315:44: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744071562067968’ to ‘2147483648’ [-Woverflow] 6315 | const size_t mask = MASK_CONTIG_ID | MASK_CONTIG_TYPE; /<>/src/CompactedDBG.tcc: In member function ‘UnitigMap CompactedDBG::find(const Kmer&, const preAllocMinHashIterator&)’: /<>/src/CompactedDBG.tcc:6593:42: warning: right shift count >= width of type [-Wshift-count-overflow] 6593 | unitig_id = v(i, flag_v) >> 32; | ~~~~~~~~~~~~~^~~~~ In file included from /<>/src/CompactedDBG.hpp:902: /<>/src/IO.tcc: In member function ‘bool CompactedDBG::read(const std::string&, size_t, bool)’: /<>/src/IO.tcc:191:60: error: no matching function for call to ‘max(long unsigned int, size_t)’ [-Wtemplate-body] 191 | MinimizerIndex hmap_min_unitigs_tmp(max(1UL, kms.MinimizerF0()) * 1.05); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:191:60: note: there are 4 candidates /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:258:5: note: candidate 1: ‘template const _Tp& std::max(const _Tp&, const _Tp&)’ 258 | max(const _Tp& __a, const _Tp& __b) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:258:5: note: template argument deduction/substitution failed: /<>/src/IO.tcc:191:60: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’}) 191 | MinimizerIndex hmap_min_unitigs_tmp(max(1UL, kms.MinimizerF0()) * 1.05); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:304:5: note: candidate 2: ‘template const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 304 | max(const _Tp& __a, const _Tp& __b, _Compare __comp) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:304:5: note: candidate expects 3 arguments, 2 provided /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5784:5: note: candidate 3: ‘template _Tp std::max(initializer_list<_Tp>)’ 5784 | max(initializer_list<_Tp> __l) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5784:5: note: candidate expects 1 argument, 2 provided /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5794:5: note: candidate 4: ‘template _Tp std::max(initializer_list<_Tp>, _Compare)’ 5794 | max(initializer_list<_Tp> __l, _Compare __comp) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5794:5: note: template argument deduction/substitution failed: /<>/src/IO.tcc:191:60: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 191 | MinimizerIndex hmap_min_unitigs_tmp(max(1UL, kms.MinimizerF0()) * 1.05); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:261:60: error: no matching function for call to ‘max(long unsigned int, size_t)’ [-Wtemplate-body] 261 | MinimizerIndex hmap_min_unitigs_tmp(max(1UL, kms.MinimizerF0()) * 1.05); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:261:60: note: there are 4 candidates /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:258:5: note: candidate 1: ‘template const _Tp& std::max(const _Tp&, const _Tp&)’ 258 | max(const _Tp& __a, const _Tp& __b) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:258:5: note: template argument deduction/substitution failed: /<>/src/IO.tcc:261:60: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’}) 261 | MinimizerIndex hmap_min_unitigs_tmp(max(1UL, kms.MinimizerF0()) * 1.05); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:304:5: note: candidate 2: ‘template const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 304 | max(const _Tp& __a, const _Tp& __b, _Compare __comp) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:304:5: note: candidate expects 3 arguments, 2 provided /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5784:5: note: candidate 3: ‘template _Tp std::max(initializer_list<_Tp>)’ 5784 | max(initializer_list<_Tp> __l) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5784:5: note: candidate expects 1 argument, 2 provided /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5794:5: note: candidate 4: ‘template _Tp std::max(initializer_list<_Tp>, _Compare)’ 5794 | max(initializer_list<_Tp> __l, _Compare __comp) | ^~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:5794:5: note: template argument deduction/substitution failed: /<>/src/IO.tcc:261:60: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 261 | MinimizerIndex hmap_min_unitigs_tmp(max(1UL, kms.MinimizerF0()) * 1.05); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc: In member function ‘bool CompactedDBG::readBinaryIndex(std::istream&, uint64_t)’: /<>/src/IO.tcc:993:55: warning: right shift count >= width of type [-Wshift-count-overflow] 993 | const size_t file_format_header = file_format >> 32; | ~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1037:41: warning: left shift count >= width of type [-Wshift-count-overflow] 1037 | const size_t id_bmp = i << 32; | ~~^~~~~ /<>/src/IO.tcc:1052:61: warning: left shift count >= width of type [-Wshift-count-overflow] 1052 | const size_t pos_id_unitig = (unitig_id << 32) | relative_pos; | ~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1085:41: warning: left shift count >= width of type [-Wshift-count-overflow] 1085 | const size_t id_bmp = i << 32; | ~~^~~~~ /<>/src/IO.tcc:1094:57: warning: left shift count >= width of type [-Wshift-count-overflow] 1094 | const size_t pos_id_unitig = (km_id << 32) | MASK_CONTIG_TYPE | km_pos; | ~~~~~~^~~~~ /<>/src/IO.tcc:1121:66: warning: right shift count >= width of type [-Wshift-count-overflow] 1121 | vector v_bmp_abundant((nb_special_minz >> 32) + 1); | ~~~~~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1122:69: warning: right shift count >= width of type [-Wshift-count-overflow] 1122 | vector v_bmp_overcrowded((nb_special_minz >> 32) + 1); | ~~~~~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1131:58: warning: right shift count >= width of type [-Wshift-count-overflow] 1131 | const bool isAbundant = v_bmp_abundant[i >> 32].contains(i & 0x00000000ffffffffULL); | ~~^~~~~ /<>/src/IO.tcc:1132:64: warning: right shift count >= width of type [-Wshift-count-overflow] 1132 | const bool isOvercrowded = v_bmp_overcrowded[i >> 32].contains(i & 0x00000000ffffffffULL); | ~~^~~~~ /<>/src/IO.tcc: In member function ‘std::pair CompactedDBG::readBinaryGraph(std::istream&)’: /<>/src/IO.tcc:1230:55: warning: right shift count >= width of type [-Wshift-count-overflow] 1230 | const size_t file_format_header = file_format >> 32; | ~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc: In member function ‘bool CompactedDBG::writeBinaryGraph(std::ostream&, size_t) const’: /<>/src/IO.tcc:1373:92: warning: left shift count >= width of type [-Wshift-count-overflow] 1373 | const size_t fileformat_version = (static_cast(BFG_GRAPHBIN_FORMAT_HEADER) << 32) | static_cast(BFG_GRAPHBIN_FORMAT_VERSION); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1373:92: warning: left shift count >= width of type [-Wshift-count-overflow] 1373 | const size_t fileformat_version = (static_cast(BFG_GRAPHBIN_FORMAT_HEADER) << 32) | static_cast(BFG_GRAPHBIN_FORMAT_VERSION); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc: In member function ‘bool CompactedDBG::writeBinaryIndex(std::ostream&, uint64_t, size_t) const’: /<>/src/IO.tcc:1431:57: warning: right shift count >= width of type [-Wshift-count-overflow] 1431 | const size_t nb_bmp_minz = (hmap_min_unitigs.size() >> 32) + 1; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1442:91: warning: left shift count >= width of type [-Wshift-count-overflow] 1442 | const size_t fileformat_version = (static_cast(BFG_METABIN_FORMAT_HEADER) << 32) | static_cast(BFG_METABIN_FORMAT_VERSION); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1442:91: warning: left shift count >= width of type [-Wshift-count-overflow] 1442 | const size_t fileformat_version = (static_cast(BFG_METABIN_FORMAT_HEADER) << 32) | static_cast(BFG_METABIN_FORMAT_VERSION); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1471:67: warning: right shift count >= width of type [-Wshift-count-overflow] 1471 | const size_t nb_bmp_unitigs = (v_block_len_unitigs.back() >> 32) + 1; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc: In lambda function: /<>/src/IO.tcc:1494:57: warning: right shift count >= width of type [-Wshift-count-overflow] 1494 | const size_t unitig_id = unitig_idx >> 32; | ~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1501:45: warning: right shift count >= width of type [-Wshift-count-overflow] 1501 | lv_bmp_minz[id_minz >> 32].add(id_minz & 0x00000000ffffffffULL); | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1512:49: warning: right shift count >= width of type [-Wshift-count-overflow] 1512 | lv_bmp_km_short[pos >> 32].add(pos & 0x00000000ffffffffULL); | ~~~~^~~~~ /<>/src/IO.tcc:1516:53: warning: right shift count >= width of type [-Wshift-count-overflow] 1516 | lv_bmp_minz[id_minz >> 32].add(id_minz & 0x00000000ffffffffULL); | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1531:48: warning: right shift count >= width of type [-Wshift-count-overflow] 1531 | lv_bmp_unitigs[pos >> 32].add(pos & 0x00000000ffffffffULL); | ~~~~^~~~~ /<>/src/IO.tcc:1535:61: warning: right shift count >= width of type [-Wshift-count-overflow] 1535 | lv_bmp_minz[id_minz >> 32].add(id_minz & 0x00000000ffffffffULL); | ~~~~~~~~^~~~~ /<>/src/IO.tcc: In member function ‘bool CompactedDBG::writeBinaryIndex(std::ostream&, uint64_t, size_t) const’: /<>/src/IO.tcc:1681:61: warning: right shift count >= width of type [-Wshift-count-overflow] 1681 | const size_t nb_bmp_special_minz = (nb_special_minz >> 32) + 1; | ~~~~~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1695:48: warning: right shift count >= width of type [-Wshift-count-overflow] 1695 | if (v_bmp_minz[id_minz >> 32].contains(id_minz & 0x00000000ffffffffULL)) { | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1706:73: warning: right shift count >= width of type [-Wshift-count-overflow] 1706 | const size_t unitig_id = unitig_idx >> 32; | ~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1713:70: warning: right shift count >= width of type [-Wshift-count-overflow] 1713 | const size_t id_bmp = id_special >> 32; | ~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1762:48: warning: right shift count >= width of type [-Wshift-count-overflow] 1762 | if (v_bmp_minz[id_minz >> 32].contains(id_minz & 0x00000000ffffffffULL)) { | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1773:69: warning: right shift count >= width of type [-Wshift-count-overflow] 1773 | const size_t unitig_id = unitig_idx >> 32; | ~~~~~~~~~~~^~~~~ In file included from /<>/src/DataManager.hpp:10, from /<>/src/ColoredCDBG.hpp:10, from /<>/src/Bifrost.cpp:2: /<>/src/DataStorage.tcc: In instantiation of ‘std::pair, UnitigColors*> DataStorage::insert_(Kmer, size_t, bool) [with Unitig_data_t = void; size_t = unsigned int]’: /<>/src/DataStorage.tcc:1763:60: required from here 1763 | const pair, UnitigColors*> p(insert_(head, unitig_sz, force_overflow)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/DataStorage.tcc:1741:45: warning: narrowing conversion of ‘pos’ from ‘uint64_t’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] 1741 | overflow.insert({{head, unitig_sz}, pos}); // Insertion | ^~~ /<>/src/DataStorage.tcc: In instantiation of ‘UnitigColors DataStorage::joinUnitigColors(const_UnitigColorMap&, const_UnitigColorMap&) const [with Unitig_data_t = void; const_UnitigColorMap = UnitigMap, DataStorage, true>]’: /<>/src/DataAccessor.tcc:174:48: required from here 174 | UnitigColors uc_ = ds->joinUnitigColors(um_dest, um_src); // Join the UnitigColors of the two reference unitigs | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/src/DataStorage.tcc:1444:36: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 1444 | size_t prev_color_id = 0xffffffffffffffff; | ^~~~~~~~~~~~~~~~~~ /<>/src/DataStorage.tcc:1445:35: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 1445 | size_t prev_km_dist = 0xffffffffffffffff; | ^~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_() [with bool is_const = true; T = CompressedCoverage_t >]’: /<>/src/UnitigIterator.tcc:7:145: required from ‘unitigIterator::unitigIterator() [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; bool is_const = false]’ 7 | unitigIterator::unitigIterator() : i(0), v_unitigs_sz(0), v_kmers_sz(0), h_kmers_ccov_sz(0), sz(0), invalid(true), cdbg(nullptr) {} | ^ /<>/src/ColoredCDBG.tcc:979:54: required from here 979 | typename ColoredCDBG::iterator l_a, l_b; | ^~~ /<>/src/KmerHashTable.hpp:35:42: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:35:70: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_& KmerHashTable::iterator_::operator++() [with bool is_const = true; T = CompressedCoverage_t >]’: /<>/src/UnitigIterator.tcc:55:9: required from ‘unitigIterator& unitigIterator::operator++() [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; bool is_const = false]’ 55 | ++it_h_kmers_ccov; | ^~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:991:86: required from here 991 | for (size_t cpt = 0; (cpt < chunk) && (l_b != g_b); ++cpt, ++l_b){} | ^~~ /<>/src/KmerHashTable.hpp:88:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 88 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘bool CompactedDBG::construct(const CDBG_Build_opt&, DualBlockedBloomFilter&, Roaring&, size_t, size_t, size_t, size_t) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:679:62: required from ‘bool CompactedDBG::build(CDBG_Build_opt&) [with Unitig_data_t = void; Graph_data_t = void]’ 679 | if (construct_finished) construct_finished = construct(opt, dbbf, r, nb_unique_minimizers, nb_non_unique_minimizers, nb_unique_kmers, nb_non_unique_kmers); // Construction step | ^~~~~~~~~ /<>/src/Bifrost.cpp:640:41: required from here 640 | success = cdbg.build(opt); | ~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc:2879:22: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 2879 | size_t read_id = 0xffffffffffffffffULL; // First sequence read with initialize read_id to read_id+1=0 | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/ColoredCDBG.hpp:516: /<>/src/ColoredCDBG.tcc: In instantiation of ‘bool ColoredCDBG::search(const std::vector >&, std::ostream&, bool, bool, bool, size_t, bool) const [with Unitig_data_t = void; std::ostream = std::basic_ostream; size_t = unsigned int]’: /<>/src/ColoredCDBG.tcc:1600:34: required from ‘bool ColoredCDBG::search(const std::vector >&, const std::string&, bool, bool, bool, size_t, bool) const [with Unitig_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 1600 | const bool ret = this->search(query_filenames, out, found_km_ratio_out, inexact_search, files_as_queries, nb_threads, verbose); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:731:51: required from here 731 | success = ccdbg.search( opt.filename_query_in, opt.prefixFilenameOut, opt.get_ratio_found_km, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 | opt.inexact_search, opt.files_as_queries, opt.nb_threads, opt.verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:2426:27: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 2426 | size_t prev_file_id = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:2797:65: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 2797 | size_t prev_file_id_local = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/CompactedDBG.hpp:901: /<>/src/Search.tcc: In instantiation of ‘bool CompactedDBG::search(const std::vector >&, std::ostream&, bool, bool, bool, size_t, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::ostream = std::basic_ostream; size_t = unsigned int]’: /<>/src/Search.tcc:1119:34: required from ‘bool CompactedDBG::search(const std::vector >&, const std::string&, bool, bool, bool, size_t, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 1119 | const bool ret = this->search( query_filenames, out, found_km_ratio_out, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1120 | inexact_search, files_as_queries, nb_threads, verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:758:50: required from here 758 | success = cdbg.search( opt.filename_query_in, opt.prefixFilenameOut, opt.get_ratio_found_km, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 | opt.inexact_search, opt.files_as_queries, opt.nb_threads, opt.verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Search.tcc:1614:27: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 1614 | size_t prev_file_id = 0xffffffffffffffffULL; // Please don't input 2^64-1 files :D | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/Search.tcc: In instantiation of ‘bool CompactedDBG::searchMinRatioKmer(const std::vector >&, std::ostream&, double, bool, bool, size_t, size_t) const [with Unitig_data_t = void; Graph_data_t = void; std::ostream = std::basic_ostream; size_t = unsigned int]’: /<>/src/Search.tcc:1079:46: required from ‘bool CompactedDBG::searchMinRatioKmer(const std::vector >&, const std::string&, double, bool, bool, size_t, size_t) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 1079 | const bool ret = this->searchMinRatioKmer( query_filenames, out, min_ratio_kmers, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 | inexact_search, files_as_queries, nb_threads, verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:763:62: required from here 763 | success = cdbg.searchMinRatioKmer( opt.filename_query_in, opt.prefixFilenameOut, opt.min_ratio_kmers_search, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 | opt.inexact_search, opt.files_as_queries, opt.nb_threads, opt.verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Search.tcc:1178:27: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 1178 | size_t prev_file_id = 0xffffffffffffffffULL; // Please don't input 2^64-1 files :D | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_(KHT_ptr_t, size_t) [with bool is_const = false; T = CompressedCoverage_t >; KHT_ptr_t = KmerHashTable > >*; size_t = unsigned int]’: /<>/src/KmerHashTable.hpp:389:61: required from ‘KmerHashTable::iterator KmerHashTable::find(size_t) [with T = CompressedCoverage_t >; iterator = KmerHashTable > >::iterator_; size_t = unsigned int]’ 389 | if ((h < size_) && !table_keys[h].isEmpty()) return iterator(this, h); | ^~~~~~~~~~~~~~~~~ /<>/src/UnitigMap.tcc:96:55: required from ‘Kmer UnitigMap::getUnitigHead() const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; bool is_const = false]’ 96 | if (isAbundant) return cdbg->h_kmers_ccov.find(pos_unitig).getKey(); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/src/DataStorage.tcc:1600:43: required from here 1600 | const Kmer head = um.getUnitigHead(); | ~~~~~~~~~~~~~~~~^~ /<>/src/KmerHashTable.hpp:37:72: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 37 | iterator_(KHT_ptr_t ht_, size_t h_) : ht(ht_), h(h_), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_(KHT_ptr_t) [with bool is_const = false; T = CompressedCoverage_t >; KHT_ptr_t = KmerHashTable > >*]’: /<>/src/KmerHashTable.hpp:391:16: required from ‘KmerHashTable::iterator KmerHashTable::find(size_t) [with T = CompressedCoverage_t >; iterator = KmerHashTable > >::iterator_; size_t = unsigned int]’ 391 | return iterator(this); | ^~~~~~~~~~~~~~ /<>/src/UnitigMap.tcc:96:55: required from ‘Kmer UnitigMap::getUnitigHead() const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; bool is_const = false]’ 96 | if (isAbundant) return cdbg->h_kmers_ccov.find(pos_unitig).getKey(); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/src/DataStorage.tcc:1600:43: required from here 1600 | const Kmer head = um.getUnitigHead(); | ~~~~~~~~~~~~~~~~^~ /<>/src/KmerHashTable.hpp:36:51: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:36:79: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘bool CompactedDBG::construct(const CDBG_Build_opt&, DualBlockedBloomFilter&, Roaring&, size_t, size_t, size_t, size_t) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:679:62: required from ‘bool CompactedDBG::build(CDBG_Build_opt&) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 679 | if (construct_finished) construct_finished = construct(opt, dbbf, r, nb_unique_minimizers, nb_non_unique_minimizers, nb_unique_kmers, nb_non_unique_kmers); // Construction step | ^~~~~~~~~ /<>/src/ColoredCDBG.tcc:399:31: required from ‘bool ColoredCDBG::buildGraph(const CCDBG_Build_opt&) [with Unitig_data_t = void]’ 399 | invalid = !this->build(opt_); | ~~~~~~~~~~~^~~~~~ /<>/src/Bifrost.cpp:630:47: required from here 630 | success = ccdbg.buildGraph(opt); | ~~~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc:2879:22: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 2879 | size_t read_id = 0xffffffffffffffffULL; // First sequence read with initialize read_id to read_id+1=0 | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘UnitigMap CompactedDBG::find(const Kmer&, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’: /<>/src/CompactedDBG.tcc:8074:26: required from ‘size_t CompactedDBG::removeUnitigs(bool, bool, std::vector&) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’ 8074 | if (!find(head.backwardBase(alpha[i]), true).isEmpty){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:706:26: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 706 | size_t removed = removeUnitigs(delete_short_isolated_unitigs, clip_short_tips, v_joins); | ^~~~~~~~~~~~~ /<>/src/Bifrost.cpp:632:58: required from here 632 | if (success) success = ccdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:1219:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1219 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘void CompactedDBG::swapUnitigs(bool, size_t, size_t) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:8103:25: required from ‘size_t CompactedDBG::removeUnitigs(bool, bool, std::vector&) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’ 8103 | swapUnitigs(false, j, v_unitigs_sz), | ^~~~~~~~~~~ /<>/src/CompactedDBG.tcc:706:26: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 706 | size_t removed = removeUnitigs(delete_short_isolated_unitigs, clip_short_tips, v_joins); | ^~~~~~~~~~~~~ /<>/src/Bifrost.cpp:632:58: required from here 632 | if (success) success = ccdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:5316:37: warning: left shift count >= width of type [-Wshift-count-overflow] 5316 | size_t shift_id_unitig_a = id_a << 32; | ~~~~~^~~~~ /<>/src/CompactedDBG.tcc:5317:37: warning: left shift count >= width of type [-Wshift-count-overflow] 5317 | size_t shift_id_unitig_b = id_b << 32; | ~~~~~^~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_& KmerHashTable::iterator_::operator++() [with bool is_const = false; T = CompressedCoverage_t >]’: /<>/src/CompactedDBG.tcc:8159:97: required from ‘size_t CompactedDBG::removeUnitigs(bool, bool, std::vector&) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’ 8159 | for (typename h_kmers_ccov_t::iterator it = h_kmers_ccov.begin(); it != h_kmers_ccov.end(); ++it) { | ^~~~ /<>/src/CompactedDBG.tcc:706:26: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 706 | size_t removed = removeUnitigs(delete_short_isolated_unitigs, clip_short_tips, v_joins); | ^~~~~~~~~~~~~ /<>/src/Bifrost.cpp:632:58: required from here 632 | if (success) success = ccdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:88:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 88 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘typename std::enable_if<(! is_void), void>::type CompactedDBG::deleteUnitig_(bool, bool, size_t, bool) [with bool is_void = false; Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; typename std::enable_if<(! is_void), void>::type = void; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:8196:87: required from ‘size_t CompactedDBG::removeUnitigs(bool, bool, std::vector&) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’ 8196 | for (j = v_unitigs_sz; j < v_unitigs.size(); ++j) deleteUnitig_::value>(false, false, j); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:706:26: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 706 | size_t removed = removeUnitigs(delete_short_isolated_unitigs, clip_short_tips, v_joins); | ^~~~~~~~~~~~~ /<>/src/Bifrost.cpp:632:58: required from here 632 | if (success) success = ccdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:6009:42: warning: left shift count >= width of type [-Wshift-count-overflow] 6009 | size_t pos_id_unitig = id_unitig << 32; | ~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_& KmerHashTable::iterator_::operator++() [with bool is_const = false; T = char]’: /<>/src/CompactedDBG.tcc:7468:79: required from ‘typename std::enable_if<(! is_void), unsigned int>::type CompactedDBG::joinUnitigs_(std::vector*, size_t) [with bool is_void = false; Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; typename std::enable_if<(! is_void), unsigned int>::type = unsigned int; size_t = unsigned int]’ 7468 | for (KmerHashTable::iterator it = joins.begin(); it != joins.end(); ++it) { | ^~~~ /<>/src/CompactedDBG.tcc:708:70: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 708 | if (clip_short_tips) joined = joinUnitigs_::value>(&v_joins); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/Bifrost.cpp:632:58: required from here 632 | if (success) success = ccdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:88:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 88 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘bool CompactedDBG::addUnitig(const std::string&, size_t) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:7576:30: required from ‘typename std::enable_if<(! is_void), unsigned int>::type CompactedDBG::joinUnitigs_(std::vector*, size_t) [with bool is_void = false; Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; typename std::enable_if<(! is_void), unsigned int>::type = unsigned int; size_t = unsigned int]’ 7576 | addUnitig(joinSeq, v_unitigs_size); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:708:70: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 708 | if (clip_short_tips) joined = joinUnitigs_::value>(&v_joins); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/Bifrost.cpp:632:58: required from here 632 | if (success) success = ccdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:4724:38: warning: left shift count >= width of type [-Wshift-count-overflow] 4724 | size_t pos_id_unitig = id_unitig << 32; | ~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc:4864:62: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744069414584321’ to ‘1’ [-Woverflow] 4864 | else flag_v = v.push_back(MASK_CONTIG_ID + 1, flag_v); /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_& KmerHashTable::iterator_::operator++() [with bool is_const = true; T = CompressedCoverage_t]’: /<>/src/CompactedDBG.tcc:130:9: required from ‘CompactedDBG& CompactedDBG::toDataGraph(CompactedDBG&&, size_t) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 130 | ++it_s; | ^~~~~~ /<>/src/CompactedDBG.tcc:611:45: required from ‘bool CompactedDBG::build(CDBG_Build_opt&) [with Unitig_data_t = void; Graph_data_t = void]’ 611 | if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads); | ^~~~~~~~~~~ /<>/src/Bifrost.cpp:640:41: required from here 640 | success = cdbg.build(opt); | ~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp:88:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 88 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_& KmerHashTable::iterator_::operator++() [with bool is_const = false; T = CompressedCoverage_t]’: /<>/src/CompactedDBG.tcc:3515:125: required from ‘bool CompactedDBG::construct(const CDBG_Build_opt&, DualBlockedBloomFilter&, Roaring&, size_t, size_t, size_t, size_t) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 3515 | for (typename h_kmers_ccov_t::iterator it = dbg_extra.h_kmers_ccov.begin(); it != dbg_extra.h_kmers_ccov.end(); ++it) { | ^~~~ /<>/src/CompactedDBG.tcc:679:62: required from ‘bool CompactedDBG::build(CDBG_Build_opt&) [with Unitig_data_t = void; Graph_data_t = void]’ 679 | if (construct_finished) construct_finished = construct(opt, dbbf, r, nb_unique_minimizers, nb_non_unique_minimizers, nb_unique_kmers, nb_non_unique_kmers); // Construction step | ^~~~~~~~~ /<>/src/Bifrost.cpp:640:41: required from here 640 | success = cdbg.build(opt); | ~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp:88:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 88 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘UnitigMap CompactedDBG::find(const Kmer&, bool) [with Unitig_data_t = void; Graph_data_t = void]’: /<>/src/CompactedDBG.tcc:3523:53: required from ‘bool CompactedDBG::construct(const CDBG_Build_opt&, DualBlockedBloomFilter&, Roaring&, size_t, size_t, size_t, size_t) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 3523 | const UnitigMap um2 = find(km, true); | ~~~~^~~~~~~~~~ /<>/src/CompactedDBG.tcc:679:62: required from ‘bool CompactedDBG::build(CDBG_Build_opt&) [with Unitig_data_t = void; Graph_data_t = void]’ 679 | if (construct_finished) construct_finished = construct(opt, dbbf, r, nb_unique_minimizers, nb_non_unique_minimizers, nb_unique_kmers, nb_non_unique_kmers); // Construction step | ^~~~~~~~~ /<>/src/Bifrost.cpp:640:41: required from here 640 | success = cdbg.build(opt); | ~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc:1219:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1219 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘void CompactedDBG::swapUnitigs(bool, size_t, size_t) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:8103:25: required from ‘size_t CompactedDBG::removeUnitigs(bool, bool, std::vector&) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 8103 | swapUnitigs(false, j, v_unitigs_sz), | ^~~~~~~~~~~ /<>/src/CompactedDBG.tcc:706:26: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = void; Graph_data_t = void]’ 706 | size_t removed = removeUnitigs(delete_short_isolated_unitigs, clip_short_tips, v_joins); | ^~~~~~~~~~~~~ /<>/src/Bifrost.cpp:642:57: required from here 642 | if (success) success = cdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:5316:37: warning: left shift count >= width of type [-Wshift-count-overflow] 5316 | size_t shift_id_unitig_a = id_a << 32; | ~~~~~^~~~~ /<>/src/CompactedDBG.tcc:5317:37: warning: left shift count >= width of type [-Wshift-count-overflow] 5317 | size_t shift_id_unitig_b = id_b << 32; | ~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘typename std::enable_if::type CompactedDBG::deleteUnitig_(bool, bool, size_t, bool) [with bool is_void = true; Unitig_data_t = void; Graph_data_t = void; typename std::enable_if::type = void; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:8196:87: required from ‘size_t CompactedDBG::removeUnitigs(bool, bool, std::vector&) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 8196 | for (j = v_unitigs_sz; j < v_unitigs.size(); ++j) deleteUnitig_::value>(false, false, j); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:706:26: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = void; Graph_data_t = void]’ 706 | size_t removed = removeUnitigs(delete_short_isolated_unitigs, clip_short_tips, v_joins); | ^~~~~~~~~~~~~ /<>/src/Bifrost.cpp:642:57: required from here 642 | if (success) success = cdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:6169:42: warning: left shift count >= width of type [-Wshift-count-overflow] 6169 | size_t pos_id_unitig = id_unitig << 32; | ~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘bool CompactedDBG::addUnitig(const std::string&, size_t) [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:7734:30: required from ‘typename std::enable_if::type CompactedDBG::joinUnitigs_(std::vector*, size_t) [with bool is_void = true; Unitig_data_t = void; Graph_data_t = void; typename std::enable_if::type = unsigned int; size_t = unsigned int]’ 7734 | addUnitig(joinSeq, v_unitigs_size); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:708:70: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = void; Graph_data_t = void]’ 708 | if (clip_short_tips) joined = joinUnitigs_::value>(&v_joins); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/Bifrost.cpp:642:57: required from here 642 | if (success) success = cdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:4724:38: warning: left shift count >= width of type [-Wshift-count-overflow] 4724 | size_t pos_id_unitig = id_unitig << 32; | ~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc:4864:62: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744069414584321’ to ‘1’ [-Woverflow] 4864 | else flag_v = v.push_back(MASK_CONTIG_ID + 1, flag_v); /<>/src/CompactedDBG.tcc: In instantiation of ‘std::vector > CompactedDBG::findPredecessors(const Kmer&, bool) const [with Unitig_data_t = void; Graph_data_t = void]’: /<>/src/IO.tcc:468:72: required from ‘bool CompactedDBG::writeGFA(const std::string&, size_t, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 468 | const vector> pred = findPredecessors(head, true); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/src/IO.tcc:82:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 82 | if (GFA_output) write_success = writeGFA(fn, nb_threads, compressed_output); | ^~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:1342:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1342 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘std::vector > CompactedDBG::findSuccessors(const Kmer&, size_t, bool) const [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’: /<>/src/IO.tcc:469:70: required from ‘bool CompactedDBG::writeGFA(const std::string&, size_t, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 469 | const vector> succ = findSuccessors(tail, 4, true); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/src/IO.tcc:82:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 82 | if (GFA_output) write_success = writeGFA(fn, nb_threads, compressed_output); | ^~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:1658:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1658 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_& KmerHashTable::iterator_::operator++() [with bool is_const = false; T = unsigned int]’: /<>/src/IO.tcc:667:78: required from ‘bool CompactedDBG::writeGFA(const std::string&, size_t, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 667 | for (size_t i = 0; (it != idmap.end()) && (i < chunk_size); ++i, ++it) { | ^~~~ /<>/src/IO.tcc:82:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 82 | if (GFA_output) write_success = writeGFA(fn, nb_threads, compressed_output); | ^~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:88:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 88 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_() [with bool is_const = false; T = unsigned int]’: /<>/src/IO.tcc:804:57: required from ‘bool CompactedDBG::writeGFA(const std::string&, size_t, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 804 | KmerHashTable::iterator l_it; | ^~~~ /<>/src/IO.tcc:82:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 82 | if (GFA_output) write_success = writeGFA(fn, nb_threads, compressed_output); | ^~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:35:42: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:35:70: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc: In instantiation of ‘bool CompactedDBG::writeBinaryGraph(std::ostream&, size_t) const [with Unitig_data_t = void; Graph_data_t = void; std::ostream = std::basic_ostream; size_t = unsigned int]’: /<>/src/IO.tcc:1362:28: required from ‘bool CompactedDBG::writeBinaryGraph(const std::string&, size_t) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 1362 | return writeBinaryGraph(out, nb_threads); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:84:62: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 84 | else if (BFG_output) write_success = writeBinaryGraph(fn, nb_threads); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:1373:92: warning: left shift count >= width of type [-Wshift-count-overflow] 1373 | const size_t fileformat_version = (static_cast(BFG_GRAPHBIN_FORMAT_HEADER) << 32) | static_cast(BFG_GRAPHBIN_FORMAT_VERSION); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc: In instantiation of ‘bool CompactedDBG::writeBinaryIndex(std::ostream&, uint64_t, size_t) const [with Unitig_data_t = void; Graph_data_t = void; std::ostream = std::basic_ostream; uint64_t = long long unsigned int; size_t = unsigned int]’: /<>/src/IO.tcc:1423:28: required from ‘bool CompactedDBG::writeBinaryIndex(const std::string&, uint64_t, size_t) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; size_t = unsigned int]’ 1423 | return writeBinaryIndex(out, checksum, nb_threads); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:117:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 117 | write_success = writeBinaryIndex(fn, graph_checksum, nb_threads); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:1431:57: warning: right shift count >= width of type [-Wshift-count-overflow] 1431 | const size_t nb_bmp_minz = (hmap_min_unitigs.size() >> 32) + 1; | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1442:91: warning: left shift count >= width of type [-Wshift-count-overflow] 1442 | const size_t fileformat_version = (static_cast(BFG_METABIN_FORMAT_HEADER) << 32) | static_cast(BFG_METABIN_FORMAT_VERSION); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1471:67: warning: right shift count >= width of type [-Wshift-count-overflow] 1471 | const size_t nb_bmp_unitigs = (v_block_len_unitigs.back() >> 32) + 1; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1472:77: warning: right shift count >= width of type [-Wshift-count-overflow] 1472 | const size_t nb_bmp_km_short = ((km_unitigs.size() * (k_ - g_ + 1)) >> 32) + 1; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1494:57: warning: right shift count >= width of type [-Wshift-count-overflow] 1494 | const size_t unitig_id = unitig_idx >> 32; | ~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1501:45: warning: right shift count >= width of type [-Wshift-count-overflow] 1501 | lv_bmp_minz[id_minz >> 32].add(id_minz & 0x00000000ffffffffULL); | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1512:49: warning: right shift count >= width of type [-Wshift-count-overflow] 1512 | lv_bmp_km_short[pos >> 32].add(pos & 0x00000000ffffffffULL); | ~~~~^~~~~ /<>/src/IO.tcc:1516:53: warning: right shift count >= width of type [-Wshift-count-overflow] 1516 | lv_bmp_minz[id_minz >> 32].add(id_minz & 0x00000000ffffffffULL); | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1531:48: warning: right shift count >= width of type [-Wshift-count-overflow] 1531 | lv_bmp_unitigs[pos >> 32].add(pos & 0x00000000ffffffffULL); | ~~~~^~~~~ /<>/src/IO.tcc:1535:61: warning: right shift count >= width of type [-Wshift-count-overflow] 1535 | lv_bmp_minz[id_minz >> 32].add(id_minz & 0x00000000ffffffffULL); | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1681:61: warning: right shift count >= width of type [-Wshift-count-overflow] 1681 | const size_t nb_bmp_special_minz = (nb_special_minz >> 32) + 1; | ~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1695:48: warning: right shift count >= width of type [-Wshift-count-overflow] 1695 | if (v_bmp_minz[id_minz >> 32].contains(id_minz & 0x00000000ffffffffULL)) { | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1706:73: warning: right shift count >= width of type [-Wshift-count-overflow] 1706 | const size_t unitig_id = unitig_idx >> 32; | ~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1713:70: warning: right shift count >= width of type [-Wshift-count-overflow] 1713 | const size_t id_bmp = id_special >> 32; | ~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1762:48: warning: right shift count >= width of type [-Wshift-count-overflow] 1762 | if (v_bmp_minz[id_minz >> 32].contains(id_minz & 0x00000000ffffffffULL)) { | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1773:69: warning: right shift count >= width of type [-Wshift-count-overflow] 1773 | const size_t unitig_id = unitig_idx >> 32; | ~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘bool CompactedDBG::annotateSplitUnitig(const std::string&, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string]’: /<>/src/CompactedDBG.tcc:2243:61: required from ‘bool CompactedDBG::annotateSplitUnitigs(const CompactedDBG&, size_t, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’ 2243 | for (const auto& unitig : o) annotateSplitUnitig(unitig.referenceUnitigToString(), false); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:203:82: required from ‘bool ColoredCDBG::merge(ColoredCDBG&&, size_t, bool) [with Unitig_data_t = void; size_t = unsigned int]’ 203 | ret = CompactedDBG, DataStorage>::annotateSplitUnitigs(o, nb_threads, verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:675:65: required from here 675 | if (success) success = ccdbg_a.merge(move(ccdbg_b), lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:5654:27: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 5654 | size_t nb_prev_pred = 0xFFFFFFFFFFFFFFFF; | ^~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:5655:27: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 5655 | size_t nb_prev_succ = 0xFFFFFFFFFFFFFFFF; | ^~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘bool CompactedDBG::annotateSplitUnitig(const std::string&, LockGraph&, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string]’: /<>/src/CompactedDBG.tcc:2284:52: required from ‘bool CompactedDBG::annotateSplitUnitigs(const CompactedDBG&, size_t, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’ 2284 | annotateSplitUnitig(it_unitig->referenceUnitigToString(), lck_g/*, t*/, false); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:203:82: required from ‘bool ColoredCDBG::merge(ColoredCDBG&&, size_t, bool) [with Unitig_data_t = void; size_t = unsigned int]’ 203 | ret = CompactedDBG, DataStorage>::annotateSplitUnitigs(o, nb_threads, verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:675:65: required from here 675 | if (success) success = ccdbg_a.merge(move(ccdbg_b), lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:5805:27: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 5805 | size_t nb_prev_pred = 0xFFFFFFFFFFFFFFFF; | ^~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:5806:27: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 5806 | size_t nb_prev_succ = 0xFFFFFFFFFFFFFFFF; | ^~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc: In instantiation of ‘std::pair CompactedDBG::readBinaryGraph(std::istream&) [with Unitig_data_t = void; Graph_data_t = void; std::istream = std::basic_istream]’: /<>/src/IO.tcc:1198:27: required from ‘std::pair CompactedDBG::readBinaryGraph(const std::string&) [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string]’ 1198 | return readBinaryGraph(in); | ~~~~~~~~~~~~~~~^~~~ /<>/src/IO.tcc:382:46: required from ‘bool CompactedDBG::read(const std::string&, const std::string&, size_t, bool) [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 382 | p_readSuccess_checksum = readBinaryGraph(input_graph_fn); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:687:46: required from here 687 | else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:1230:55: warning: right shift count >= width of type [-Wshift-count-overflow] 1230 | const size_t file_format_header = file_format >> 32; | ~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc: In instantiation of ‘bool CompactedDBG::readBinaryIndex(std::istream&, uint64_t) [with Unitig_data_t = void; Graph_data_t = void; std::istream = std::basic_istream; uint64_t = long long unsigned int]’: /<>/src/IO.tcc:945:27: required from ‘bool CompactedDBG::readBinaryIndex(const std::string&, uint64_t) [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 945 | return readBinaryIndex(in, checksum); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/src/IO.tcc:392:32: required from ‘bool CompactedDBG::read(const std::string&, const std::string&, size_t, bool) [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 392 | invalid = !readBinaryIndex(input_index_fn, p_readSuccess_checksum.first); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:687:46: required from here 687 | else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:993:55: warning: right shift count >= width of type [-Wshift-count-overflow] 993 | const size_t file_format_header = file_format >> 32; | ~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1037:41: warning: left shift count >= width of type [-Wshift-count-overflow] 1037 | const size_t id_bmp = i << 32; | ~~^~~~~ /<>/src/IO.tcc:1052:61: warning: left shift count >= width of type [-Wshift-count-overflow] 1052 | const size_t pos_id_unitig = (unitig_id << 32) | relative_pos; | ~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1085:41: warning: left shift count >= width of type [-Wshift-count-overflow] 1085 | const size_t id_bmp = i << 32; | ~~^~~~~ /<>/src/IO.tcc:1094:57: warning: left shift count >= width of type [-Wshift-count-overflow] 1094 | const size_t pos_id_unitig = (km_id << 32) | MASK_CONTIG_TYPE | km_pos; | ~~~~~~~^~~~~~ /<>/src/IO.tcc:1121:66: warning: right shift count >= width of type [-Wshift-count-overflow] 1121 | vector v_bmp_abundant((nb_special_minz >> 32) + 1); | ~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1122:69: warning: right shift count >= width of type [-Wshift-count-overflow] 1122 | vector v_bmp_overcrowded((nb_special_minz >> 32) + 1); | ~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1131:58: warning: right shift count >= width of type [-Wshift-count-overflow] 1131 | const bool isAbundant = v_bmp_abundant[i >> 32].contains(i & 0x00000000ffffffffULL); | ~~^~~~~ /<>/src/IO.tcc:1132:64: warning: right shift count >= width of type [-Wshift-count-overflow] 1132 | const bool isOvercrowded = v_bmp_overcrowded[i >> 32].contains(i & 0x00000000ffffffffULL); | ~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘bool CompactedDBG::annotateSplitUnitig(const std::string&, bool) [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string]’: /<>/src/CompactedDBG.tcc:2243:61: required from ‘bool CompactedDBG::annotateSplitUnitigs(const CompactedDBG&, size_t, bool) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 2243 | for (const auto& unitig : o) annotateSplitUnitig(unitig.referenceUnitigToString(), false); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:2129:13: required from ‘bool CompactedDBG::merge(const CompactedDBG&, size_t, bool) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 2129 | if (annotateSplitUnitigs(o, nb_threads, verbose)){ | ^~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:707:55: required from here 707 | success = cdbg_a.merge(cdbg_b, lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:5654:27: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 5654 | size_t nb_prev_pred = 0xFFFFFFFFFFFFFFFF; | ^~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:5655:27: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 5655 | size_t nb_prev_succ = 0xFFFFFFFFFFFFFFFF; | ^~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘bool CompactedDBG::annotateSplitUnitig(const std::string&, LockGraph&, bool) [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string]’: /<>/src/CompactedDBG.tcc:2284:52: required from ‘bool CompactedDBG::annotateSplitUnitigs(const CompactedDBG&, size_t, bool) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 2284 | annotateSplitUnitig(it_unitig->referenceUnitigToString(), lck_g/*, t*/, false); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:2129:13: required from ‘bool CompactedDBG::merge(const CompactedDBG&, size_t, bool) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 2129 | if (annotateSplitUnitigs(o, nb_threads, verbose)){ | ^~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:707:55: required from here 707 | success = cdbg_a.merge(cdbg_b, lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:5805:27: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 5805 | size_t nb_prev_pred = 0xFFFFFFFFFFFFFFFF; | ^~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:5806:27: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 5806 | size_t nb_prev_succ = 0xFFFFFFFFFFFFFFFF; | ^~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc: In instantiation of ‘bool ColoredCDBG::searchMinRatioKmer_(const std::vector >&, std::ostream&, double, size_t, bool, bool, size_t, bool) const [with Unitig_data_t = void; std::ostream = std::basic_ostream; size_t = unsigned int]’: /<>/src/ColoredCDBG.tcc:1613:12: required from ‘bool ColoredCDBG::searchMinRatioKmer(const std::vector >&, std::ostream&, double, bool, bool, size_t, bool) const [with Unitig_data_t = void; std::ostream = std::basic_ostream; size_t = unsigned int]’ 1613 | return searchMinRatioKmer_( query_filenames, out, min_ratio_kmers, 0, | ^~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:1526:46: required from ‘bool ColoredCDBG::searchMinRatioKmer(const std::vector >&, const std::string&, double, bool, bool, size_t, bool) const [with Unitig_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 1526 | const bool ret = this->searchMinRatioKmer(query_filenames, out, min_ratio_kmers, inexact_search, files_as_queries, nb_threads, verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:736:63: required from here 736 | success = ccdbg.searchMinRatioKmer( opt.filename_query_in, opt.prefixFilenameOut, opt.min_ratio_kmers_search, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 | opt.inexact_search, opt.files_as_queries, opt.nb_threads, opt.verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:1703:27: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 1703 | size_t prev_file_id = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:2169:65: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 2169 | size_t prev_file_id_local = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_(KHT_ptr_t, size_t) [with bool is_const = true; T = CompressedCoverage_t >; KHT_ptr_t = const KmerHashTable > >*; size_t = unsigned int]’: /<>/src/KmerHashTable.hpp:396:61: required from ‘KmerHashTable::const_iterator KmerHashTable::find(size_t) const [with T = CompressedCoverage_t >; const_iterator = KmerHashTable > >::iterator_; size_t = unsigned int]’ 396 | if ((h < size_) && !table_keys[h].isEmpty()) return const_iterator(this, h); | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/UnitigMap.tcc:274:51: required from ‘typename std::enable_if<(! is_void), typename std::conditional::type>::type UnitigMap::getData_() const [with bool is_void = false; Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; bool is_const = true; typename std::enable_if<(! is_void), typename std::conditional::type>::type = const DataAccessor*; typename std::conditional::type = const DataAccessor*]’ 274 | if (isAbundant) return cdbg->h_kmers_ccov.find(pos_unitig)->getData(); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/src/UnitigMap.tcc:253:39: required from ‘UnitigMap::Unitig_data_ptr_t UnitigMap::getData() const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; bool is_const = true; Unitig_data_ptr_t = const DataAccessor*]’ 253 | return getData_::value>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /<>/src/DataAccessor.tcc:243:48: required from here 243 | const UnitigColors* uc_src = um_src.getData()->getUnitigColors(um_src); // Get UnitigColors associated with reference unitig of um_src | ~~~~~~~~~~~~~~^~ /<>/src/KmerHashTable.hpp:37:72: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 37 | iterator_(KHT_ptr_t ht_, size_t h_) : ht(ht_), h(h_), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_(KHT_ptr_t) [with bool is_const = true; T = CompressedCoverage_t >; KHT_ptr_t = const KmerHashTable > >*]’: /<>/src/KmerHashTable.hpp:398:16: required from ‘KmerHashTable::const_iterator KmerHashTable::find(size_t) const [with T = CompressedCoverage_t >; const_iterator = KmerHashTable > >::iterator_; size_t = unsigned int]’ 398 | return const_iterator(this); | ^~~~~~~~~~~~~~~~~~~~ /<>/src/UnitigMap.tcc:274:51: required from ‘typename std::enable_if<(! is_void), typename std::conditional::type>::type UnitigMap::getData_() const [with bool is_void = false; Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; bool is_const = true; typename std::enable_if<(! is_void), typename std::conditional::type>::type = const DataAccessor*; typename std::conditional::type = const DataAccessor*]’ 274 | if (isAbundant) return cdbg->h_kmers_ccov.find(pos_unitig)->getData(); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/src/UnitigMap.tcc:253:39: required from ‘UnitigMap::Unitig_data_ptr_t UnitigMap::getData() const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; bool is_const = true; Unitig_data_ptr_t = const DataAccessor*]’ 253 | return getData_::value>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /<>/src/DataAccessor.tcc:243:48: required from here 243 | const UnitigColors* uc_src = um_src.getData()->getUnitigColors(um_src); // Get UnitigColors associated with reference unitig of um_src | ~~~~~~~~~~~~~~^~ /<>/src/KmerHashTable.hpp:36:51: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:36:79: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘void KmerHashTable::iterator_::get_to_first() [with bool is_const = false; T = CompressedCoverage_t >]’: /<>/src/KmerHashTable.hpp:734:24: required from ‘KmerHashTable::iterator KmerHashTable::begin() [with T = CompressedCoverage_t >; iterator = KmerHashTable > >::iterator_]’ 734 | it.get_to_first(); | ~~~~~~~~~~~~~~~^~ /<>/src/UnitigIterator.tcc:12:165: required from ‘unitigIterator::unitigIterator(CompactedDBG_ptr_t) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; bool is_const = false; CompactedDBG_ptr_t = CompactedDBG, DataStorage >*]’ 12 | it_h_kmers_ccov((cdbg_ == nullptr) || cdbg_->invalid ? typename KmerHashTable>::const_iterator() : cdbg_->h_kmers_ccov.begin()){ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /<>/src/CompactedDBG.tcc:2509:14: required from ‘CompactedDBG::iterator CompactedDBG::begin() [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; iterator = unitigIterator, DataStorage, false>]’ 2509 | iterator it(this); | ^~ /<>/src/ColoredCDBG.tcc:968:59: required from here 968 | typename ColoredCDBG::iterator g_a = this->begin(); | ~~~~~~~~~~~^~ /<>/src/KmerHashTable.hpp:109:21: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 109 | h = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:110:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 110 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘const_UnitigMap CompactedDBG::find(const Kmer&, bool) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; const_UnitigMap = UnitigMap, DataStorage, true>]’: /<>/src/CompactedDBG.tcc:7427:50: required from ‘void CompactedDBG::createJoinHT(std::vector*, KmerHashTable&, size_t) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’ 7427 | const const_UnitigMap cm = find(km, true); | ~~~~^~~~~~~~~~ /<>/src/CompactedDBG.tcc:7464:17: required from ‘typename std::enable_if<(! is_void), unsigned int>::type CompactedDBG::joinUnitigs_(std::vector*, size_t) [with bool is_void = false; Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; typename std::enable_if<(! is_void), unsigned int>::type = unsigned int; size_t = unsigned int]’ 7464 | createJoinHT(v_joins, joins, nb_threads); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:708:70: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 708 | if (clip_short_tips) joined = joinUnitigs_::value>(&v_joins); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/Bifrost.cpp:632:58: required from here 632 | if (success) success = ccdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:1016:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1016 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_(KHT_ptr_t) [with bool is_const = false; T = char; KHT_ptr_t = KmerHashTable*]’: /<>/src/KmerHashTable.hpp:732:18: required from ‘KmerHashTable::iterator KmerHashTable::begin() [with T = char; iterator = KmerHashTable::iterator_]’ 732 | iterator it(this); | ^~ /<>/src/CompactedDBG.tcc:7468:56: required from ‘typename std::enable_if<(! is_void), unsigned int>::type CompactedDBG::joinUnitigs_(std::vector*, size_t) [with bool is_void = false; Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; typename std::enable_if<(! is_void), unsigned int>::type = unsigned int; size_t = unsigned int]’ 7468 | for (KmerHashTable::iterator it = joins.begin(); it != joins.end(); ++it) { | ~~~~~~~~~~~^~ /<>/src/CompactedDBG.tcc:708:70: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 708 | if (clip_short_tips) joined = joinUnitigs_::value>(&v_joins); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/Bifrost.cpp:632:58: required from here 632 | if (success) success = ccdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:36:51: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:36:79: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘void KmerHashTable::iterator_::get_to_first() [with bool is_const = false; T = char]’: /<>/src/KmerHashTable.hpp:734:24: required from ‘KmerHashTable::iterator KmerHashTable::begin() [with T = char; iterator = KmerHashTable::iterator_]’ 734 | it.get_to_first(); | ~~~~~~~~~~~~~~~^~ /<>/src/CompactedDBG.tcc:7468:56: required from ‘typename std::enable_if<(! is_void), unsigned int>::type CompactedDBG::joinUnitigs_(std::vector*, size_t) [with bool is_void = false; Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; typename std::enable_if<(! is_void), unsigned int>::type = unsigned int; size_t = unsigned int]’ 7468 | for (KmerHashTable::iterator it = joins.begin(); it != joins.end(); ++it) { | ~~~~~~~~~~~^~ /<>/src/CompactedDBG.tcc:708:70: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 708 | if (clip_short_tips) joined = joinUnitigs_::value>(&v_joins); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/Bifrost.cpp:632:58: required from here 632 | if (success) success = ccdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:109:21: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 109 | h = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:110:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 110 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘std::vector > CompactedDBG::findPredecessors(const Kmer&, bool) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’: /<>/src/IO.tcc:468:72: required from ‘bool CompactedDBG::writeGFA(const std::string&, size_t, bool) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 468 | const vector> pred = findPredecessors(head, true); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/src/IO.tcc:82:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 82 | if (GFA_output) write_success = writeGFA(fn, nb_threads, compressed_output); | ^~~~~~~~ /<>/src/ColoredCDBG.tcc:422:62: required from ‘bool ColoredCDBG::write(const std::string&, size_t, bool, bool, bool) const [with Unitig_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 422 | if (!CompactedDBG, DataStorage>::write(prefix_output_fn, nb_threads, true, false, false, write_index_file, compress_output, verbose)) return false; // Write graph | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:634:55: required from here 634 | if (success) success = ccdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:1342:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1342 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘std::vector > CompactedDBG::findSuccessors(const Kmer&, size_t, bool) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’: /<>/src/IO.tcc:469:70: required from ‘bool CompactedDBG::writeGFA(const std::string&, size_t, bool) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 469 | const vector> succ = findSuccessors(tail, 4, true); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/src/IO.tcc:82:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 82 | if (GFA_output) write_success = writeGFA(fn, nb_threads, compressed_output); | ^~~~~~~~ /<>/src/ColoredCDBG.tcc:422:62: required from ‘bool ColoredCDBG::write(const std::string&, size_t, bool, bool, bool) const [with Unitig_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 422 | if (!CompactedDBG, DataStorage>::write(prefix_output_fn, nb_threads, true, false, false, write_index_file, compress_output, verbose)) return false; // Write graph | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:634:55: required from here 634 | if (success) success = ccdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:1658:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1658 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc: In instantiation of ‘bool CompactedDBG::writeBinaryGraph(std::ostream&, size_t) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::ostream = std::basic_ostream; size_t = unsigned int]’: /<>/src/IO.tcc:1362:28: required from ‘bool CompactedDBG::writeBinaryGraph(const std::string&, size_t) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 1362 | return writeBinaryGraph(out, nb_threads); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:84:62: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 84 | else if (BFG_output) write_success = writeBinaryGraph(fn, nb_threads); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:422:62: required from ‘bool ColoredCDBG::write(const std::string&, size_t, bool, bool, bool) const [with Unitig_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 422 | if (!CompactedDBG, DataStorage>::write(prefix_output_fn, nb_threads, true, false, false, write_index_file, compress_output, verbose)) return false; // Write graph | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:634:55: required from here 634 | if (success) success = ccdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:1373:92: warning: left shift count >= width of type [-Wshift-count-overflow] 1373 | const size_t fileformat_version = (static_cast(BFG_GRAPHBIN_FORMAT_HEADER) << 32) | static_cast(BFG_GRAPHBIN_FORMAT_VERSION); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc: In instantiation of ‘bool CompactedDBG::writeBinaryIndex(std::ostream&, uint64_t, size_t) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::ostream = std::basic_ostream; uint64_t = long long unsigned int; size_t = unsigned int]’: /<>/src/IO.tcc:1423:28: required from ‘bool CompactedDBG::writeBinaryIndex(const std::string&, uint64_t, size_t) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; size_t = unsigned int]’ 1423 | return writeBinaryIndex(out, checksum, nb_threads); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:117:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 117 | write_success = writeBinaryIndex(fn, graph_checksum, nb_threads); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:422:62: required from ‘bool ColoredCDBG::write(const std::string&, size_t, bool, bool, bool) const [with Unitig_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 422 | if (!CompactedDBG, DataStorage>::write(prefix_output_fn, nb_threads, true, false, false, write_index_file, compress_output, verbose)) return false; // Write graph | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:634:55: required from here 634 | if (success) success = ccdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:1431:57: warning: right shift count >= width of type [-Wshift-count-overflow] 1431 | const size_t nb_bmp_minz = (hmap_min_unitigs.size() >> 32) + 1; | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1442:91: warning: left shift count >= width of type [-Wshift-count-overflow] 1442 | const size_t fileformat_version = (static_cast(BFG_METABIN_FORMAT_HEADER) << 32) | static_cast(BFG_METABIN_FORMAT_VERSION); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1471:67: warning: right shift count >= width of type [-Wshift-count-overflow] 1471 | const size_t nb_bmp_unitigs = (v_block_len_unitigs.back() >> 32) + 1; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1472:77: warning: right shift count >= width of type [-Wshift-count-overflow] 1472 | const size_t nb_bmp_km_short = ((km_unitigs.size() * (k_ - g_ + 1)) >> 32) + 1; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1494:57: warning: right shift count >= width of type [-Wshift-count-overflow] 1494 | const size_t unitig_id = unitig_idx >> 32; | ~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1501:45: warning: right shift count >= width of type [-Wshift-count-overflow] 1501 | lv_bmp_minz[id_minz >> 32].add(id_minz & 0x00000000ffffffffULL); | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1512:49: warning: right shift count >= width of type [-Wshift-count-overflow] 1512 | lv_bmp_km_short[pos >> 32].add(pos & 0x00000000ffffffffULL); | ~~~~^~~~~ /<>/src/IO.tcc:1516:53: warning: right shift count >= width of type [-Wshift-count-overflow] 1516 | lv_bmp_minz[id_minz >> 32].add(id_minz & 0x00000000ffffffffULL); | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1531:48: warning: right shift count >= width of type [-Wshift-count-overflow] 1531 | lv_bmp_unitigs[pos >> 32].add(pos & 0x00000000ffffffffULL); | ~~~~^~~~~ /<>/src/IO.tcc:1535:61: warning: right shift count >= width of type [-Wshift-count-overflow] 1535 | lv_bmp_minz[id_minz >> 32].add(id_minz & 0x00000000ffffffffULL); | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1681:61: warning: right shift count >= width of type [-Wshift-count-overflow] 1681 | const size_t nb_bmp_special_minz = (nb_special_minz >> 32) + 1; | ~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1695:48: warning: right shift count >= width of type [-Wshift-count-overflow] 1695 | if (v_bmp_minz[id_minz >> 32].contains(id_minz & 0x00000000ffffffffULL)) { | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1706:73: warning: right shift count >= width of type [-Wshift-count-overflow] 1706 | const size_t unitig_id = unitig_idx >> 32; | ~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1713:70: warning: right shift count >= width of type [-Wshift-count-overflow] 1713 | const size_t id_bmp = id_special >> 32; | ~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1762:48: warning: right shift count >= width of type [-Wshift-count-overflow] 1762 | if (v_bmp_minz[id_minz >> 32].contains(id_minz & 0x00000000ffffffffULL)) { | ~~~~~~~~^~~~~ /<>/src/IO.tcc:1773:69: warning: right shift count >= width of type [-Wshift-count-overflow] 1773 | const size_t unitig_id = unitig_idx >> 32; | ~~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_(KHT_ptr_t) [with bool is_const = false; T = CompressedCoverage_t; KHT_ptr_t = KmerHashTable >*]’: /<>/src/KmerHashTable.hpp:732:18: required from ‘KmerHashTable::iterator KmerHashTable::begin() [with T = CompressedCoverage_t; iterator = KmerHashTable >::iterator_]’ 732 | iterator it(this); | ^~ /<>/src/CompactedDBG.tcc:119:90: required from ‘CompactedDBG& CompactedDBG::toDataGraph(CompactedDBG&&, size_t) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 119 | KmerHashTable>::const_iterator it_s = o.h_kmers_ccov.begin(); | ~~~~~~~~~~~~~~~~~~~~^~ /<>/src/CompactedDBG.tcc:611:45: required from ‘bool CompactedDBG::build(CDBG_Build_opt&) [with Unitig_data_t = void; Graph_data_t = void]’ 611 | if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads); | ^~~~~~~~~~~ /<>/src/Bifrost.cpp:640:41: required from here 640 | success = cdbg.build(opt); | ~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp:36:51: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:36:79: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘void KmerHashTable::iterator_::get_to_first() [with bool is_const = false; T = CompressedCoverage_t]’: /<>/src/KmerHashTable.hpp:734:24: required from ‘KmerHashTable::iterator KmerHashTable::begin() [with T = CompressedCoverage_t; iterator = KmerHashTable >::iterator_]’ 734 | it.get_to_first(); | ~~~~~~~~~~~~~~~^~ /<>/src/CompactedDBG.tcc:119:90: required from ‘CompactedDBG& CompactedDBG::toDataGraph(CompactedDBG&&, size_t) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 119 | KmerHashTable>::const_iterator it_s = o.h_kmers_ccov.begin(); | ~~~~~~~~~~~~~~~~~~~~^~ /<>/src/CompactedDBG.tcc:611:45: required from ‘bool CompactedDBG::build(CDBG_Build_opt&) [with Unitig_data_t = void; Graph_data_t = void]’ 611 | if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads); | ^~~~~~~~~~~ /<>/src/Bifrost.cpp:640:41: required from here 640 | success = cdbg.build(opt); | ~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp:109:21: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 109 | h = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:110:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 110 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_() [with bool is_const = false; T = CompressedCoverage_t]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_pair.h:746:9: required from ‘constexpr std::pair<_T1, _T2>::pair() [with _U1 = KmerHashTable >::iterator_; _U2 = bool; typename std::enable_if, std::__is_implicitly_default_constructible<_U2> >::value, bool>::type = true; _T1 = KmerHashTable >::iterator_; _T2 = bool]’ 746 | : first(), second() { } | ^~~~~~~ /<>/src/KmerHashTable.hpp:573:45: required from ‘std::pair::iterator_, bool> KmerHashTable::insert(Kmer&&, T&&) [with T = CompressedCoverage_t]’ 573 | pair it_ret; | ^~~~~~ /<>/src/CompactedDBG.tcc:128:28: required from ‘CompactedDBG& CompactedDBG::toDataGraph(CompactedDBG&&, size_t) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 128 | h_kmers_ccov.insert(move(km), move(it_s->ccov)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:611:45: required from ‘bool CompactedDBG::build(CDBG_Build_opt&) [with Unitig_data_t = void; Graph_data_t = void]’ 611 | if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads); | ^~~~~~~~~~~ /<>/src/Bifrost.cpp:640:41: required from here 640 | success = cdbg.build(opt); | ~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp:35:42: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:35:70: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_() [with bool is_const = false; T = unsigned char]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_pair.h:746:9: required from ‘constexpr std::pair<_T1, _T2>::pair() [with _U1 = KmerHashTable::iterator_; _U2 = bool; typename std::enable_if, std::__is_implicitly_default_constructible<_U2> >::value, bool>::type = true; _T1 = KmerHashTable::iterator_; _T2 = bool]’ 746 | : first(), second() { } | ^~~~~~~ /<>/src/KmerHashTable.hpp:473:45: required from ‘std::pair::iterator_, bool> KmerHashTable::insert(const Kmer&, const T&) [with T = unsigned char]’ 473 | pair it_ret; | ^~~~~~ /<>/src/CompactedDBG.tcc:3080:135: required from ‘bool CompactedDBG::construct(const CDBG_Build_opt&, DualBlockedBloomFilter&, Roaring&, size_t, size_t, size_t, size_t) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 3080 | const pair::const_iterator, bool> p_insert_kmt_fp_cand = kmt_fp_cand.insert(km_rep, 0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /<>/src/CompactedDBG.tcc:679:62: required from ‘bool CompactedDBG::build(CDBG_Build_opt&) [with Unitig_data_t = void; Graph_data_t = void]’ 679 | if (construct_finished) construct_finished = construct(opt, dbbf, r, nb_unique_minimizers, nb_non_unique_minimizers, nb_unique_kmers, nb_non_unique_kmers); // Construction step | ^~~~~~~~~ /<>/src/Bifrost.cpp:640:41: required from here 640 | success = cdbg.build(opt); | ~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp:35:42: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:35:70: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_() [with bool is_const = true; T = CompressedCoverage_t]’: /<>/src/CompactedDBG.tcc:7308:69: required from ‘void CompactedDBG::createJoinHT(std::vector*, KmerHashTable&, size_t) const [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 7308 | typename h_kmers_ccov_t::const_iterator l_it; | ^~~~ /<>/src/CompactedDBG.tcc:7633:17: required from ‘typename std::enable_if::type CompactedDBG::joinUnitigs_(std::vector*, size_t) [with bool is_void = true; Unitig_data_t = void; Graph_data_t = void; typename std::enable_if::type = unsigned int; size_t = unsigned int]’ 7633 | createJoinHT(v_joins, joins, nb_threads); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:708:70: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = void; Graph_data_t = void]’ 708 | if (clip_short_tips) joined = joinUnitigs_::value>(&v_joins); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/Bifrost.cpp:642:57: required from here 642 | if (success) success = cdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:35:42: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:35:70: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘const_UnitigMap CompactedDBG::find(const Kmer&, bool) const [with Unitig_data_t = void; Graph_data_t = void; const_UnitigMap = UnitigMap]’: /<>/src/CompactedDBG.tcc:7427:50: required from ‘void CompactedDBG::createJoinHT(std::vector*, KmerHashTable&, size_t) const [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 7427 | const const_UnitigMap cm = find(km, true); | ~~~~^~~~~~~~~~ /<>/src/CompactedDBG.tcc:7633:17: required from ‘typename std::enable_if::type CompactedDBG::joinUnitigs_(std::vector*, size_t) [with bool is_void = true; Unitig_data_t = void; Graph_data_t = void; typename std::enable_if::type = unsigned int; size_t = unsigned int]’ 7633 | createJoinHT(v_joins, joins, nb_threads); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:708:70: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = void; Graph_data_t = void]’ 708 | if (clip_short_tips) joined = joinUnitigs_::value>(&v_joins); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/Bifrost.cpp:642:57: required from here 642 | if (success) success = cdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:1016:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1016 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_(KHT_ptr_t, size_t) [with bool is_const = false; T = CompressedCoverage_t; KHT_ptr_t = KmerHashTable >*; size_t = unsigned int]’: /<>/src/KmerHashTable.hpp:389:61: required from ‘KmerHashTable::iterator KmerHashTable::find(size_t) [with T = CompressedCoverage_t; iterator = KmerHashTable >::iterator_; size_t = unsigned int]’ 389 | if ((h < size_) && !table_keys[h].isEmpty()) return iterator(this, h); | ^~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:7650:72: required from ‘typename std::enable_if::type CompactedDBG::joinUnitigs_(std::vector*, size_t) [with bool is_void = true; Unitig_data_t = void; Graph_data_t = void; typename std::enable_if::type = unsigned int; size_t = unsigned int]’ 7650 | else if (cmHead.isAbundant) cmHead_head = h_kmers_ccov.find(cmHead.pos_unitig).getKey(); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:708:70: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = void; Graph_data_t = void]’ 708 | if (clip_short_tips) joined = joinUnitigs_::value>(&v_joins); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/Bifrost.cpp:642:57: required from here 642 | if (success) success = cdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:37:72: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 37 | iterator_(KHT_ptr_t ht_, size_t h_) : ht(ht_), h(h_), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_(KHT_ptr_t) [with bool is_const = false; T = unsigned int; KHT_ptr_t = KmerHashTable*]’: /<>/src/KmerHashTable.hpp:316:16: required from ‘KmerHashTable::iterator KmerHashTable::find(const Kmer&) [with T = unsigned int; iterator = KmerHashTable::iterator_]’ 316 | return iterator(this); | ^~~~~~~~~~~~~~ /<>/src/IO.tcc:475:65: required from ‘bool CompactedDBG::writeGFA(const std::string&, size_t, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 475 | if (unitig.isAbundant) labelB = *(idmap.find(unitig.getUnitigHead().rep())); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:82:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 82 | if (GFA_output) write_success = writeGFA(fn, nb_threads, compressed_output); | ^~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:36:51: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:36:79: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘void KmerHashTable::iterator_::get_to_first() [with bool is_const = false; T = unsigned int]’: /<>/src/KmerHashTable.hpp:734:24: required from ‘KmerHashTable::iterator KmerHashTable::begin() [with T = unsigned int; iterator = KmerHashTable::iterator_]’ 734 | it.get_to_first(); | ~~~~~~~~~~~~~~~^~ /<>/src/IO.tcc:544:62: required from ‘bool CompactedDBG::writeGFA(const std::string&, size_t, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 544 | for (KmerHashTable::iterator it = idmap.begin(); it != idmap.end(); it++) { | ~~~~~~~~~~~^~ /<>/src/IO.tcc:82:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 82 | if (GFA_output) write_success = writeGFA(fn, nb_threads, compressed_output); | ^~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:109:21: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 109 | h = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:110:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 110 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_(KHT_ptr_t) [with bool is_const = true; T = CompressedCoverage_t; KHT_ptr_t = const KmerHashTable >*]’: /<>/src/KmerHashTable.hpp:741:24: required from ‘KmerHashTable::const_iterator KmerHashTable::begin() const [with T = CompressedCoverage_t; const_iterator = KmerHashTable >::iterator_]’ 741 | const_iterator it(this); | ^~ /<>/src/IO.tcc:876:74: required from ‘bool CompactedDBG::writeFASTA(const std::string&, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string]’ 876 | for (typename h_kmers_ccov_t::const_iterator it = h_kmers_ccov.begin(); !gout.fail() && (it != h_kmers_ccov.end()); ++it, ++i) { | ~~~~~~~~~~~~~~~~~~^~ /<>/src/IO.tcc:83:48: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 83 | else if (FASTA_output) write_success = writeFASTA(fn, compressed_output); | ^~~~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:36:51: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:36:79: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘void KmerHashTable::iterator_::get_to_first() [with bool is_const = true; T = CompressedCoverage_t]’: /<>/src/KmerHashTable.hpp:743:24: required from ‘KmerHashTable::const_iterator KmerHashTable::begin() const [with T = CompressedCoverage_t; const_iterator = KmerHashTable >::iterator_]’ 743 | it.get_to_first(); | ~~~~~~~~~~~~~~~^~ /<>/src/IO.tcc:876:74: required from ‘bool CompactedDBG::writeFASTA(const std::string&, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string]’ 876 | for (typename h_kmers_ccov_t::const_iterator it = h_kmers_ccov.begin(); !gout.fail() && (it != h_kmers_ccov.end()); ++it, ++i) { | ~~~~~~~~~~~~~~~~~~^~ /<>/src/IO.tcc:83:48: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 83 | else if (FASTA_output) write_success = writeFASTA(fn, compressed_output); | ^~~~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:109:21: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 109 | h = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:110:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 110 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/MinimizerIndex.hpp: In instantiation of ‘MinimizerIndex::iterator_& MinimizerIndex::iterator_::operator++() [with bool is_const = true]’: /<>/src/IO.tcc:1542:17: required from ‘bool CompactedDBG::writeBinaryIndex(std::ostream&, uint64_t, size_t) const [with Unitig_data_t = void; Graph_data_t = void; std::ostream = std::basic_ostream; uint64_t = long long unsigned int; size_t = unsigned int]’ 1542 | ++it; | ^~~~ /<>/src/IO.tcc:1423:28: required from ‘bool CompactedDBG::writeBinaryIndex(const std::string&, uint64_t, size_t) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; size_t = unsigned int]’ 1423 | return writeBinaryIndex(out, checksum, nb_threads); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:117:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 117 | write_success = writeBinaryIndex(fn, graph_checksum, nb_threads); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/MinimizerIndex.hpp:101:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 101 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/MinimizerIndex.hpp: In instantiation of ‘MinimizerIndex::iterator_::iterator_() [with bool is_const = true]’: /<>/src/IO.tcc:1621:48: required from ‘bool CompactedDBG::writeBinaryIndex(std::ostream&, uint64_t, size_t) const [with Unitig_data_t = void; Graph_data_t = void; std::ostream = std::basic_ostream; uint64_t = long long unsigned int; size_t = unsigned int]’ 1621 | MinimizerIndex::const_iterator lit; | ^~~ /<>/src/IO.tcc:1423:28: required from ‘bool CompactedDBG::writeBinaryIndex(const std::string&, uint64_t, size_t) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; size_t = unsigned int]’ 1423 | return writeBinaryIndex(out, checksum, nb_threads); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:117:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 117 | write_success = writeBinaryIndex(fn, graph_checksum, nb_threads); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/MinimizerIndex.hpp:34:42: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 34 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/MinimizerIndex.hpp:34:70: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 34 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc: In instantiation of ‘std::pair CompactedDBG::readBinaryGraph(std::istream&) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::istream = std::basic_istream]’: /<>/src/IO.tcc:1198:27: required from ‘std::pair CompactedDBG::readBinaryGraph(const std::string&) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string]’ 1198 | return readBinaryGraph(in); | ~~~~~~~~~~~~~~~^~~~ /<>/src/IO.tcc:382:46: required from ‘bool CompactedDBG::read(const std::string&, const std::string&, size_t, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 382 | p_readSuccess_checksum = readBinaryGraph(input_graph_fn); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:709:71: required from ‘bool ColoredCDBG::read(const std::string&, const std::string&, const std::string&, size_t, bool) [with Unitig_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 709 | invalid = !CompactedDBG, DataStorage>::read(input_graph_fn, input_index_fn, nb_threads, verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:655:47: required from here 655 | else success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:1230:55: warning: right shift count >= width of type [-Wshift-count-overflow] 1230 | const size_t file_format_header = file_format >> 32; | ~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc: In instantiation of ‘bool CompactedDBG::readBinaryIndex(std::istream&, uint64_t) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::istream = std::basic_istream; uint64_t = long long unsigned int]’: /<>/src/IO.tcc:945:27: required from ‘bool CompactedDBG::readBinaryIndex(const std::string&, uint64_t) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ 945 | return readBinaryIndex(in, checksum); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/src/IO.tcc:392:32: required from ‘bool CompactedDBG::read(const std::string&, const std::string&, size_t, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 392 | invalid = !readBinaryIndex(input_index_fn, p_readSuccess_checksum.first); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:709:71: required from ‘bool ColoredCDBG::read(const std::string&, const std::string&, const std::string&, size_t, bool) [with Unitig_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 709 | invalid = !CompactedDBG, DataStorage>::read(input_graph_fn, input_index_fn, nb_threads, verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:655:47: required from here 655 | else success = ccdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.filename_colors_in, lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/IO.tcc:993:55: warning: right shift count >= width of type [-Wshift-count-overflow] 993 | const size_t file_format_header = file_format >> 32; | ~~~~~~~~~~~~^~~~~ /<>/src/IO.tcc:1037:41: warning: left shift count >= width of type [-Wshift-count-overflow] 1037 | const size_t id_bmp = i << 32; | ~~^~~~~ /<>/src/IO.tcc:1052:61: warning: left shift count >= width of type [-Wshift-count-overflow] 1052 | const size_t pos_id_unitig = (unitig_id << 32) | relative_pos; | ~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1085:41: warning: left shift count >= width of type [-Wshift-count-overflow] 1085 | const size_t id_bmp = i << 32; | ~~^~~~~ /<>/src/IO.tcc:1094:57: warning: left shift count >= width of type [-Wshift-count-overflow] 1094 | const size_t pos_id_unitig = (km_id << 32) | MASK_CONTIG_TYPE | km_pos; | ~~~~~~~^~~~~~ /<>/src/IO.tcc:1121:66: warning: right shift count >= width of type [-Wshift-count-overflow] 1121 | vector v_bmp_abundant((nb_special_minz >> 32) + 1); | ~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1122:69: warning: right shift count >= width of type [-Wshift-count-overflow] 1122 | vector v_bmp_overcrowded((nb_special_minz >> 32) + 1); | ~~~~~~~~~~~~~~~~~^~~~~~ /<>/src/IO.tcc:1131:58: warning: right shift count >= width of type [-Wshift-count-overflow] 1131 | const bool isAbundant = v_bmp_abundant[i >> 32].contains(i & 0x00000000ffffffffULL); | ~~^~~~~ /<>/src/IO.tcc:1132:64: warning: right shift count >= width of type [-Wshift-count-overflow] 1132 | const bool isOvercrowded = v_bmp_overcrowded[i >> 32].contains(i & 0x00000000ffffffffULL); | ~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘std::vector > CompactedDBG::findPredecessors(const Kmer&, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’: /<>/src/CompactedDBG.tcc:5691:59: required from ‘bool CompactedDBG::annotateSplitUnitig(const std::string&, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string]’ 5691 | vector> um_bw(findPredecessors(p.first)); | ~~~~~~~~~~~~~~~~^~~~~~~~~ /<>/src/CompactedDBG.tcc:2243:61: required from ‘bool CompactedDBG::annotateSplitUnitigs(const CompactedDBG&, size_t, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’ 2243 | for (const auto& unitig : o) annotateSplitUnitig(unitig.referenceUnitigToString(), false); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:203:82: required from ‘bool ColoredCDBG::merge(ColoredCDBG&&, size_t, bool) [with Unitig_data_t = void; size_t = unsigned int]’ 203 | ret = CompactedDBG, DataStorage>::annotateSplitUnitigs(o, nb_threads, verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:675:65: required from here 675 | if (success) success = ccdbg_a.merge(move(ccdbg_b), lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:1498:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1498 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘std::vector > CompactedDBG::findSuccessors(const Kmer&, size_t, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:5692:57: required from ‘bool CompactedDBG::annotateSplitUnitig(const std::string&, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string]’ 5692 | vector> um_fw(findSuccessors(p.first)); | ~~~~~~~~~~~~~~^~~~~~~~~ /<>/src/CompactedDBG.tcc:2243:61: required from ‘bool CompactedDBG::annotateSplitUnitigs(const CompactedDBG&, size_t, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’ 2243 | for (const auto& unitig : o) annotateSplitUnitig(unitig.referenceUnitigToString(), false); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:203:82: required from ‘bool ColoredCDBG::merge(ColoredCDBG&&, size_t, bool) [with Unitig_data_t = void; size_t = unsigned int]’ 203 | ret = CompactedDBG, DataStorage>::annotateSplitUnitigs(o, nb_threads, verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:675:65: required from here 675 | if (success) success = ccdbg_a.merge(move(ccdbg_b), lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:1848:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1848 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘std::vector > CompactedDBG::findPredecessors(const Kmer&, bool) [with Unitig_data_t = void; Graph_data_t = void]’: /<>/src/CompactedDBG.tcc:5691:59: required from ‘bool CompactedDBG::annotateSplitUnitig(const std::string&, bool) [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string]’ 5691 | vector> um_bw(findPredecessors(p.first)); | ~~~~~~~~~~~~~~~~^~~~~~~~~ /<>/src/CompactedDBG.tcc:2243:61: required from ‘bool CompactedDBG::annotateSplitUnitigs(const CompactedDBG&, size_t, bool) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 2243 | for (const auto& unitig : o) annotateSplitUnitig(unitig.referenceUnitigToString(), false); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:2129:13: required from ‘bool CompactedDBG::merge(const CompactedDBG&, size_t, bool) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 2129 | if (annotateSplitUnitigs(o, nb_threads, verbose)){ | ^~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:707:55: required from here 707 | success = cdbg_a.merge(cdbg_b, lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:1498:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1498 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘std::vector > CompactedDBG::findSuccessors(const Kmer&, size_t, bool) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:5692:57: required from ‘bool CompactedDBG::annotateSplitUnitig(const std::string&, bool) [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string]’ 5692 | vector> um_fw(findSuccessors(p.first)); | ~~~~~~~~~~~~~~^~~~~~~~~ /<>/src/CompactedDBG.tcc:2243:61: required from ‘bool CompactedDBG::annotateSplitUnitigs(const CompactedDBG&, size_t, bool) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 2243 | for (const auto& unitig : o) annotateSplitUnitig(unitig.referenceUnitigToString(), false); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:2129:13: required from ‘bool CompactedDBG::merge(const CompactedDBG&, size_t, bool) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 2129 | if (annotateSplitUnitigs(o, nb_threads, verbose)){ | ^~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:707:55: required from here 707 | success = cdbg_a.merge(cdbg_b, lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:1848:43: warning: right shift count >= width of type [-Wshift-count-overflow] 1848 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘bool CompactedDBG::addUnitig(const std::string&, size_t, size_t, size_t) [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:6522:30: required from ‘typename std::enable_if::type CompactedDBG::extractUnitig_(size_t&, size_t&, size_t&, size_t&, const std::vector >&) [with bool is_void = true; Unitig_data_t = void; Graph_data_t = void; typename std::enable_if::type = bool; size_t = unsigned int]’ 6522 | if (addUnitig(split_str, v_kmers_sz, pos_v_unitigs, false)) h_kmers_ccov.find(Kmer(split_str.c_str()).rep())->ccov.setFull(); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:6767:46: required from ‘std::pair CompactedDBG::splitAllUnitigs() [with Unitig_data_t = void; Graph_data_t = void]’ 6767 | extractUnitig_::value>(i, nxt_pos_insert, v_unitigs_sz, v_kmers_sz, sp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:2132:44: required from ‘bool CompactedDBG::merge(const CompactedDBG&, size_t, bool) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 2132 | const pair p = splitAllUnitigs(); | ^~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:707:55: required from here 707 | success = cdbg_a.merge(cdbg_b, lopt.nb_threads, lopt.verbose); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:5118:49: warning: left shift count >= width of type [-Wshift-count-overflow] 5118 | const size_t pos_id_unitig_r = (id_unitig_r << 32) | ((static_cast(!is_short_r) - 1) & MASK_CONTIG_TYPE); | ~~~~~~~~~~~~~^~~~~~ /<>/src/CompactedDBG.tcc:5123:38: warning: left shift count >= width of type [-Wshift-count-overflow] 5123 | size_t pos_id_unitig = id_unitig << 32; | ~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc:5290:62: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744069414584321’ to ‘1’ [-Woverflow] 5290 | else flag_v = v.push_back(MASK_CONTIG_ID + 1, flag_v); /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_() [with bool is_const = false; T = CompressedCoverage_t >]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_pair.h:746:9: required from ‘constexpr std::pair<_T1, _T2>::pair() [with _U1 = KmerHashTable > >::iterator_; _U2 = bool; typename std::enable_if, std::__is_implicitly_default_constructible<_U2> >::value, bool>::type = true; _T1 = KmerHashTable > >::iterator_; _T2 = bool]’ 746 | : first(), second() { } | ^~~~~~~ /<>/src/KmerHashTable.hpp:573:45: required from ‘std::pair::iterator_, bool> KmerHashTable::insert(Kmer&&, T&&) [with T = CompressedCoverage_t >]’ 573 | pair it_ret; | ^~~~~~ /<>/src/CompactedDBG.tcc:128:28: required from ‘CompactedDBG& CompactedDBG::toDataGraph(CompactedDBG&&, size_t) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’ 128 | h_kmers_ccov.insert(move(km), move(it_s->ccov)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:611:45: required from ‘bool CompactedDBG::build(CDBG_Build_opt&) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 611 | if (construct_finished) toDataGraph(std::move(graph_seq), opt.nb_threads); | ^~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:399:31: required from ‘bool ColoredCDBG::buildGraph(const CCDBG_Build_opt&) [with Unitig_data_t = void]’ 399 | invalid = !this->build(opt_); | ~~~~~~~~~~~^~~~~~ /<>/src/Bifrost.cpp:630:47: required from here 630 | success = ccdbg.buildGraph(opt); | ~~~~~~~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp:35:42: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:35:70: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘void KmerHashTable::iterator_::get_to_first() [with bool is_const = true; T = CompressedCoverage_t >]’: /<>/src/KmerHashTable.hpp:743:24: required from ‘KmerHashTable::const_iterator KmerHashTable::begin() const [with T = CompressedCoverage_t >; const_iterator = KmerHashTable > >::iterator_]’ 743 | it.get_to_first(); | ~~~~~~~~~~~~~~~^~ /<>/src/CompactedDBG.tcc:7142:86: required from ‘void CompactedDBG::createJoinHT(std::vector*, KmerHashTable&, size_t) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’ 7142 | for (typename h_kmers_ccov_t::const_iterator it_ccov = h_kmers_ccov.begin(); it_ccov != h_kmers_ccov.end(); ++it_ccov) { | ~~~~~~~~~~~~~~~~~~^~ /<>/src/CompactedDBG.tcc:7464:17: required from ‘typename std::enable_if<(! is_void), unsigned int>::type CompactedDBG::joinUnitigs_(std::vector*, size_t) [with bool is_void = false; Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; typename std::enable_if<(! is_void), unsigned int>::type = unsigned int; size_t = unsigned int]’ 7464 | createJoinHT(v_joins, joins, nb_threads); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:708:70: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 708 | if (clip_short_tips) joined = joinUnitigs_::value>(&v_joins); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/Bifrost.cpp:632:58: required from here 632 | if (success) success = ccdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:109:21: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 109 | h = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:110:23: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 110 | psl = 0xffffffffffffffffULL; | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_() [with bool is_const = false; T = char]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_pair.h:746:9: required from ‘constexpr std::pair<_T1, _T2>::pair() [with _U1 = KmerHashTable::iterator_; _U2 = bool; typename std::enable_if, std::__is_implicitly_default_constructible<_U2> >::value, bool>::type = true; _T1 = KmerHashTable::iterator_; _T2 = bool]’ 746 | : first(), second() { } | ^~~~~~~ /<>/src/KmerHashTable.hpp:573:45: required from ‘std::pair::iterator_, bool> KmerHashTable::insert(Kmer&&, T&&) [with T = char]’ 573 | pair it_ret; | ^~~~~~ /<>/src/CompactedDBG.tcc:7151:95: required from ‘void CompactedDBG::createJoinHT(std::vector*, KmerHashTable&, size_t) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; size_t = unsigned int]’ 7151 | if ((joins.find(tail) == joins.end()) && checkJoin(tail, cm, fw)) joins.insert(fw.twin(), tail.getChar(0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:7464:17: required from ‘typename std::enable_if<(! is_void), unsigned int>::type CompactedDBG::joinUnitigs_(std::vector*, size_t) [with bool is_void = false; Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; typename std::enable_if<(! is_void), unsigned int>::type = unsigned int; size_t = unsigned int]’ 7464 | createJoinHT(v_joins, joins, nb_threads); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:708:70: required from ‘bool CompactedDBG::simplify(bool, bool, bool) [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage]’ 708 | if (clip_short_tips) joined = joinUnitigs_::value>(&v_joins); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/src/Bifrost.cpp:632:58: required from here 632 | if (success) success = ccdbg.simplify(opt.deleteIsolated, opt.clipTips, opt.verbose); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:35:42: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:35:70: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 35 | iterator_() : ht(nullptr), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_(KHT_ptr_t) [with bool is_const = false; T = unsigned char; KHT_ptr_t = KmerHashTable*]’: /<>/src/KmerHashTable.hpp:750:16: required from ‘KmerHashTable::iterator KmerHashTable::end() [with T = unsigned char; iterator = KmerHashTable::iterator_]’ 750 | return iterator(this); | ^~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:403:39: required from ‘size_t KmerHashTable::erase(const_iterator) [with T = unsigned char; size_t = unsigned int; const_iterator = KmerHashTable::iterator_]’ 403 | if ((size_ == 0) || (it == end())) return 0; | ~~~^~ /<>/src/CompactedDBG.tcc:3084:72: required from ‘bool CompactedDBG::construct(const CDBG_Build_opt&, DualBlockedBloomFilter&, Roaring&, size_t, size_t, size_t, size_t) [with Unitig_data_t = void; Graph_data_t = void; size_t = unsigned int]’ 3084 | if (has_full_cov) kmt_fp_cand.erase(p_insert_kmt_fp_cand.first); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:679:62: required from ‘bool CompactedDBG::build(CDBG_Build_opt&) [with Unitig_data_t = void; Graph_data_t = void]’ 679 | if (construct_finished) construct_finished = construct(opt, dbbf, r, nb_unique_minimizers, nb_non_unique_minimizers, nb_unique_kmers, nb_non_unique_kmers); // Construction step | ^~~~~~~~~ /<>/src/Bifrost.cpp:640:41: required from here 640 | success = cdbg.build(opt); | ~~~~~~~~~~^~~~~ /<>/src/KmerHashTable.hpp:36:51: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:36:79: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 36 | iterator_(KHT_ptr_t ht_) : ht(ht_), h(0xffffffffffffffffULL), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp: In instantiation of ‘KmerHashTable::iterator_::iterator_(KHT_ptr_t, size_t) [with bool is_const = true; T = CompressedCoverage_t; KHT_ptr_t = const KmerHashTable >*; size_t = unsigned int]’: /<>/src/KmerHashTable.hpp:396:61: required from ‘KmerHashTable::const_iterator KmerHashTable::find(size_t) const [with T = CompressedCoverage_t; const_iterator = KmerHashTable >::iterator_; size_t = unsigned int]’ 396 | if ((h < size_) && !table_keys[h].isEmpty()) return const_iterator(this, h); | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/UnitigMap.tcc:96:55: required from ‘Kmer UnitigMap::getUnitigHead() const [with Unitig_data_t = void; Graph_data_t = void; bool is_const = true]’ 96 | if (isAbundant) return cdbg->h_kmers_ccov.find(pos_unitig).getKey(); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/src/IO.tcc:475:86: required from ‘bool CompactedDBG::writeGFA(const std::string&, size_t, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 475 | if (unitig.isAbundant) labelB = *(idmap.find(unitig.getUnitigHead().rep())); | ~~~~~~~~~~~~~~~~~~~~^~ /<>/src/IO.tcc:82:41: required from ‘bool CompactedDBG::write(const std::string&, size_t, bool, bool, bool, bool, bool, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 82 | if (GFA_output) write_success = writeGFA(fn, nb_threads, compressed_output); | ^~~~~~~~ /<>/src/Bifrost.cpp:643:54: required from here 643 | if (success) success = cdbg.write(opt.prefixFilenameOut, opt.nb_threads, opt.outputGFA, opt.outputFASTA, opt.outputBFG, opt.writeIndexFile, opt.compressOutput, opt.verbose); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/KmerHashTable.hpp:37:72: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 37 | iterator_(KHT_ptr_t ht_, size_t h_) : ht(ht_), h(h_), psl(0xffffffffffffffffULL) {} | ^~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘const_UnitigMap CompactedDBG::find(const char*, size_t, const minHashIterator&, bool) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; const_UnitigMap = UnitigMap, DataStorage, true>; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:4690:36: required from ‘const_UnitigMap CompactedDBG::findUnitig(const char*, size_t, size_t, const minHashIterator&) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; const_UnitigMap = UnitigMap, DataStorage, true>; size_t = unsigned int]’ 4690 | const_UnitigMap um = find(s, pos, it_min); | ~~~~^~~~~~~~~~~~~~~~ /<>/src/Search.tcc:668:72: required from ‘std::vector > > CompactedDBG::searchSequence(const std::string&, bool, bool, bool, bool, bool) const [with Unitig_data_t = DataAccessor; Graph_data_t = DataStorage; std::string = std::__cxx11::basic_string]’ 668 | const const_UnitigMap um = findUnitig(s_inexact_str, pos_s, s_inexact_len, mhi); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:2549:90: required from ‘bool ColoredCDBG::search(const std::vector >&, std::ostream&, bool, bool, bool, size_t, bool) const [with Unitig_data_t = void; std::ostream = std::basic_ostream; size_t = unsigned int]’ 2549 | const vector>> v_um_e = this->searchSequence(query, true, false, false, false, false); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/ColoredCDBG.tcc:1600:34: required from ‘bool ColoredCDBG::search(const std::vector >&, const std::string&, bool, bool, bool, size_t, bool) const [with Unitig_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 1600 | const bool ret = this->search(query_filenames, out, found_km_ratio_out, inexact_search, files_as_queries, nb_threads, verbose); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:731:51: required from here 731 | success = ccdbg.search( opt.filename_query_in, opt.prefixFilenameOut, opt.get_ratio_found_km, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 | opt.inexact_search, opt.files_as_queries, opt.nb_threads, opt.verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:768:43: warning: right shift count >= width of type [-Wshift-count-overflow] 768 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ /<>/src/CompactedDBG.tcc: In instantiation of ‘const_UnitigMap CompactedDBG::find(const char*, size_t, const minHashIterator&, bool) const [with Unitig_data_t = void; Graph_data_t = void; const_UnitigMap = UnitigMap; size_t = unsigned int]’: /<>/src/CompactedDBG.tcc:4690:36: required from ‘const_UnitigMap CompactedDBG::findUnitig(const char*, size_t, size_t, const minHashIterator&) const [with Unitig_data_t = void; Graph_data_t = void; const_UnitigMap = UnitigMap; size_t = unsigned int]’ 4690 | const_UnitigMap um = find(s, pos, it_min); | ~~~~^~~~~~~~~~~~~~~~ /<>/src/Search.tcc:937:72: required from ‘std::vector > > CompactedDBG::searchSequence(const std::string&, bool, bool, bool, bool, double, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string]’ 937 | const const_UnitigMap um = findUnitig(s_inexact_str, pos_s, s_inexact_len, mhi); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Search.tcc:1722:89: required from ‘bool CompactedDBG::search(const std::vector >&, std::ostream&, bool, bool, bool, size_t, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::ostream = std::basic_ostream; size_t = unsigned int]’ 1722 | const vector>> v = dbg.searchSequence( s, true, inexact_search, inexact_search, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1723 | inexact_search, 1.0, true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Search.tcc:1119:34: required from ‘bool CompactedDBG::search(const std::vector >&, const std::string&, bool, bool, bool, size_t, bool) const [with Unitig_data_t = void; Graph_data_t = void; std::string = std::__cxx11::basic_string; size_t = unsigned int]’ 1119 | const bool ret = this->search( query_filenames, out, found_km_ratio_out, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1120 | inexact_search, files_as_queries, nb_threads, verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bifrost.cpp:758:50: required from here 758 | success = cdbg.search( opt.filename_query_in, opt.prefixFilenameOut, opt.get_ratio_found_km, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 | opt.inexact_search, opt.files_as_queries, opt.nb_threads, opt.verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/CompactedDBG.tcc:768:43: warning: right shift count >= width of type [-Wshift-count-overflow] 768 | unitig_id = unitig_id_pos >> 32; | ~~~~~~~~~~~~~~^~~~~ make[3]: *** [src/CMakeFiles/bifrost_static.dir/build.make:82: src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o] Error 1 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make[2]: *** [CMakeFiles/Makefile2:115: src/CMakeFiles/bifrost_static.dir/all] Error 2 make[2]: Leaving directory '/<>/obj-arm-linux-gnueabi' make[1]: *** [Makefile:139: all] Error 2 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabi' dh_auto_build: error: cd obj-arm-linux-gnueabi && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 returned exit code 2 make: *** [debian/rules:8: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-10-24T06:13:57Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 5 Distribution: unstable Fail-Stage: build Foreign Architectures: armel Host Architecture: armel Install-Time: 13 Job: bifrost_1.3.5-2 Machine Architecture: amd64 Package: bifrost Package-Time: 30 Source-Version: 1.3.5-2 Space: n/a Status: attempted Version: 1.3.5-2 -------------------------------------------------------------------------------- Finished at 2025-10-24T06:13:57Z Build needed 00:00:30, no disk space