sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | biobambam2 2.0.128-1 (arm64) Thu, 08 Aug 2019 00:42:13 +0000 | +==============================================================================+ Package: biobambam2 Version: 2.0.128-1 Source Version: 2.0.128-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-cc100eb3-2f1c-47ff-9bda-232cb7807a29' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-07-0816.21.pdiff [5772 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-07-1410.51.pdiff [20.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-07-2011.32.pdiff [15.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-07-0816.21.pdiff [42.3 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-07-1410.51.pdiff [41.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-07-2011.32.pdiff [15.5 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-07-2011.32.pdiff [45.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-07-2011.32.pdiff [45.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8198 kB] Fetched 8574 kB in 2s (4380 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: e2fsprogs libcom-err2 libext2fs2 libselinux1 libsepol1 libss2 logsave 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1404 kB of archives. After this operation, 27.6 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 logsave amd64 1.45.3-4 [71.2 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libext2fs2 amd64 1.45.3-4 [245 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 e2fsprogs amd64 1.45.3-4 [590 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libselinux1 amd64 2.9-2+b1 [87.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libsepol1 amd64 2.9-2+b1 [265 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libcom-err2 amd64 1.45.3-4 [70.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libss2 amd64 1.45.3-4 [74.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1404 kB in 0s (37.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11988 files and directories currently installed.) Preparing to unpack .../logsave_1.45.3-4_amd64.deb ... Unpacking logsave (1.45.3-4) over (1.45.3-3) ... Preparing to unpack .../libext2fs2_1.45.3-4_amd64.deb ... Unpacking libext2fs2:amd64 (1.45.3-4) over (1.45.3-3) ... Setting up libext2fs2:amd64 (1.45.3-4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11990 files and directories currently installed.) Preparing to unpack .../libcom-err2_1.45.3-4_amd64.deb ... Unpacking libcom-err2:amd64 (1.45.3-4) over (1.45.3-3) ... Preparing to unpack .../libss2_1.45.3-4_amd64.deb ... Unpacking libss2:amd64 (1.45.3-4) over (1.45.3-3) ... Setting up libcom-err2:amd64 (1.45.3-4) ... Setting up libss2:amd64 (1.45.3-4) ... Setting up logsave (1.45.3-4) ... Setting up e2fsprogs (1.45.3-4) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'biobambam2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biobambam2.git Please use: git clone https://salsa.debian.org/med-team/biobambam2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 854 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.128-1 (dsc) [2025 B] Get:2 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.128-1 (tar) [849 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.128-1 (diff) [2832 B] Fetched 854 kB in 0s (32.7 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/biobambam2-je1xfi/biobambam2-2.0.128' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-je1xfi' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-NddmZT/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-NddmZT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NddmZT/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-NddmZT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NddmZT/apt_archive ./ Sources [362 B] Get:5 copy:/<>/resolver-NddmZT/apt_archive ./ Packages [451 B] Fetched 1770 B in 0s (87.4 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-9-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libmpx2-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev autoconf automake libtool flex bison gdb-aarch64-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-9-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sbuild-build-depends-core-dummy:arm64 sensible-utils ucf 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 42.3 MB of archives. After this operation, 162 MB of additional disk space will be used. Get:1 copy:/<>/resolver-NddmZT/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.32.51.20190727-1 [2977 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu-base amd64 8.3.0-19cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-aarch64-linux-gnu amd64 8.3.0-19cross1 [6244 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-19cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.1.0-8cross1 [185 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.28-10cross3 [1312 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:9.1.0-8cross1 [34.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 9.1.0-8cross1 [76.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 9.1.0-8cross1 [24.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 9.1.0-8cross1 [8644 B] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.1.0-8cross1 [347 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 9.1.0-8cross1 [121 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 9.1.0-8cross1 [267 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 9.1.0-8cross1 [416 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 9.1.0-8cross1 [117 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-arm64-cross all 8.3.0-19cross1 [828 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu amd64 8.3.0-19cross1 [6687 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 4.19.37-5cross3 [1252 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.28-10cross3 [2322 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-arm64-cross all 8.3.0-19cross1 [1490 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-aarch64-linux-gnu amd64 8.3.0-19cross1 [6819 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.3 MB in 1s (62.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11990 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package binutils-aarch64-linux-gnu. Preparing to unpack .../06-binutils-aarch64-linux-gnu_2.32.51.20190727-1_amd64.deb ... Unpacking binutils-aarch64-linux-gnu (2.32.51.20190727-1) ... Selecting previously unselected package gcc-8-aarch64-linux-gnu-base:amd64. Preparing to unpack .../07-gcc-8-aarch64-linux-gnu-base_8.3.0-19cross1_amd64.deb ... Unpacking gcc-8-aarch64-linux-gnu-base:amd64 (8.3.0-19cross1) ... Selecting previously unselected package cpp-8-aarch64-linux-gnu. Preparing to unpack .../08-cpp-8-aarch64-linux-gnu_8.3.0-19cross1_amd64.deb ... Unpacking cpp-8-aarch64-linux-gnu (8.3.0-19cross1) ... Selecting previously unselected package cpp-aarch64-linux-gnu. Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking cpp-aarch64-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../10-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-8-cross-base. Preparing to unpack .../11-gcc-8-cross-base_8.3.0-19cross1_all.deb ... Unpacking gcc-8-cross-base (8.3.0-19cross1) ... Selecting previously unselected package gcc-9-cross-base. Preparing to unpack .../12-gcc-9-cross-base_9.1.0-8cross1_all.deb ... Unpacking gcc-9-cross-base (9.1.0-8cross1) ... Selecting previously unselected package libc6-arm64-cross. Preparing to unpack .../13-libc6-arm64-cross_2.28-10cross3_all.deb ... Unpacking libc6-arm64-cross (2.28-10cross3) ... Selecting previously unselected package libgcc1-arm64-cross. Preparing to unpack .../14-libgcc1-arm64-cross_1%3a9.1.0-8cross1_all.deb ... Unpacking libgcc1-arm64-cross (1:9.1.0-8cross1) ... Selecting previously unselected package libgomp1-arm64-cross. Preparing to unpack .../15-libgomp1-arm64-cross_9.1.0-8cross1_all.deb ... Unpacking libgomp1-arm64-cross (9.1.0-8cross1) ... Selecting previously unselected package libitm1-arm64-cross. 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Preparing to unpack .../21-libstdc++6-arm64-cross_9.1.0-8cross1_all.deb ... Unpacking libstdc++6-arm64-cross (9.1.0-8cross1) ... Selecting previously unselected package libubsan1-arm64-cross. Preparing to unpack .../22-libubsan1-arm64-cross_9.1.0-8cross1_all.deb ... Unpacking libubsan1-arm64-cross (9.1.0-8cross1) ... Selecting previously unselected package libgcc-8-dev-arm64-cross. Preparing to unpack .../23-libgcc-8-dev-arm64-cross_8.3.0-19cross1_all.deb ... Unpacking libgcc-8-dev-arm64-cross (8.3.0-19cross1) ... Selecting previously unselected package gcc-8-aarch64-linux-gnu. Preparing to unpack .../24-gcc-8-aarch64-linux-gnu_8.3.0-19cross1_amd64.deb ... Unpacking gcc-8-aarch64-linux-gnu (8.3.0-19cross1) ... Selecting previously unselected package gcc-aarch64-linux-gnu. Preparing to unpack .../25-gcc-aarch64-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking gcc-aarch64-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package linux-libc-dev-arm64-cross. 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Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../37-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../38-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../39-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../40-libyaml-perl_1.29-1_all.deb ... Unpacking libyaml-perl (1.29-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../41-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../42-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../43-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../44-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../45-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-arm64. Preparing to unpack .../46-crossbuild-essential-arm64_12.6_all.deb ... Unpacking crossbuild-essential-arm64 (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:arm64. Preparing to unpack .../47-sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up gcc-8-cross-base (8.3.0-19cross1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up binutils-aarch64-linux-gnu (2.32.51.20190727-1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up gcc-8-aarch64-linux-gnu-base:amd64 (8.3.0-19cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up libc6-arm64-cross (2.28-10cross3) ... Setting up cpp-8-aarch64-linux-gnu (8.3.0-19cross1) ... Setting up gcc-9-cross-base (9.1.0-8cross1) ... Setting up linux-libc-dev-arm64-cross (4.19.37-5cross3) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libatomic1-arm64-cross (9.1.0-8cross1) ... Setting up libgcc1-arm64-cross (1:9.1.0-8cross1) ... Setting up liblsan0-arm64-cross (9.1.0-8cross1) ... Setting up libgomp1-arm64-cross (9.1.0-8cross1) ... Setting up libtsan0-arm64-cross (9.1.0-8cross1) ... Setting up libc6-dev-arm64-cross (2.28-10cross3) ... Setting up libasan5-arm64-cross (9.1.0-8cross1) ... Setting up libstdc++6-arm64-cross (9.1.0-8cross1) ... Setting up cpp-aarch64-linux-gnu (4:8.3.0-1) ... Setting up libitm1-arm64-cross (9.1.0-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libubsan1-arm64-cross (9.1.0-8cross1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-8-dev-arm64-cross (8.3.0-19cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-8-aarch64-linux-gnu (8.3.0-19cross1) ... Setting up libstdc++-8-dev-arm64-cross (8.3.0-19cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-aarch64-linux-gnu (4:8.3.0-1) ... Setting up g++-8-aarch64-linux-gnu (8.3.0-19cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-aarch64-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.6) ... Setting up sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-NddmZT/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-NddmZT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NddmZT/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-NddmZT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NddmZT/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-NddmZT/apt_archive ./ Packages [569 B] Fetched 2016 B in 0s (108 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:arm64 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 836 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-NddmZT/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [836 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 836 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:arm64. (Reading database ... 15276 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper-compat (= 12), pkg-config, libmaus2-dev (>= 2.0.650) Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper-compat (= 12), pkg-config, libmaus2-dev (>= 2.0.650) dpkg-deb: building package 'sbuild-build-depends-biobambam2-dummy' in '/<>/resolver-NddmZT/apt_archive/sbuild-build-depends-biobambam2-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-biobambam2-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-NddmZT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NddmZT/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-NddmZT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NddmZT/apt_archive ./ Sources [663 B] Get:5 copy:/<>/resolver-NddmZT/apt_archive ./ Packages [744 B] Fetched 2370 B in 0s (115 kB/s) Reading package lists... Reading package lists... Install biobambam2 build dependencies (apt-based resolver) ---------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gcc-9-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libitm1:arm64 liblsan0:arm64 libmaus2-2:arm64 libmaus2-dev:arm64 libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:arm64 libstdc++6:arm64 libsub-override-perl libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 linux-libc-dev:arm64 m4 man-db pkg-config po-debconf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 libstdc++-8-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gcc-9-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libitm1:arm64 liblsan0:arm64 libmaus2-2:arm64 libmaus2-dev:arm64 libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:arm64 libstdc++6:arm64 libsub-override-perl libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 linux-libc-dev:arm64 m4 man-db pkg-config po-debconf sbuild-build-depends-biobambam2-dummy:arm64 zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 50 newly installed, 0 to remove and 0 not upgraded. Need to get 23.7 MB of archives. After this operation, 125 MB of additional disk space will be used. Get:1 copy:/<>/resolver-NddmZT/apt_archive ./ sbuild-build-depends-biobambam2-dummy 0.invalid.0 [908 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.6.1-1 [1295 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.1.0-10 [190 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.4.0-1 [21.9 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.4.0-1 [14.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12.20190723-1 [80.6 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-1 [1294 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190713-2 [102 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.3 [1029 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-8-base arm64 8.3.0-19 [192 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:9.1.0-10 [34.1 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.28-10 [2521 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.1.0-10 [354 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 9.1.0-10 [8828 B] Get:36 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.2.6-1 [1206 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.28-10 [2324 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 9.1.0-10 [78.4 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 9.1.0-10 [24.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 9.1.0-10 [122 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 9.1.0-10 [274 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 9.1.0-10 [454 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 9.1.0-10 [117 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-8-dev arm64 8.3.0-19 [835 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-1+b1 [88.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main arm64 libmaus2-2 arm64 2.0.653-1 [1000 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1+b1 [208 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main arm64 libmaus2-dev arm64 2.0.653-1 [2406 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-8-dev arm64 8.3.0-19 [1491 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.7 MB in 2s (9902 kB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15276 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.6.1-1_amd64.deb ... Unpacking man-db (2.8.6.1-1) ... Selecting previously unselected package gcc-9-base:arm64. Preparing to unpack .../06-gcc-9-base_9.1.0-10_arm64.deb ... Unpacking gcc-9-base:arm64 (9.1.0-10) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../08-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../10-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../11-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../12-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... 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Selecting previously unselected package sbuild-build-depends-biobambam2-dummy:arm64. Preparing to unpack .../49-sbuild-build-depends-biobambam2-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-biobambam2-dummy:arm64 (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.60.6-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:arm64 (5.2.6-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20190713-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:arm64 (8.3.0-19) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up gcc-9-base:arm64 (9.1.0-10) ... Setting up libfile-stripnondeterminism-perl (1.4.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190723-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.6.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:arm64 (2.28-10) ... Setting up libc6-dev:arm64 (2.28-10) ... Setting up libitm1:arm64 (9.1.0-10) ... Setting up libgcc1:arm64 (1:9.1.0-10) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-1+b1) ... Setting up libgomp1:arm64 (9.1.0-10) ... Setting up dh-autoreconf (19) ... Setting up libasan5:arm64 (9.1.0-10) ... Setting up libatomic1:arm64 (9.1.0-10) ... Setting up dh-strip-nondeterminism (1.4.0-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1+b1) ... Setting up libstdc++6:arm64 (9.1.0-10) ... Setting up liblsan0:arm64 (9.1.0-10) ... Setting up libtsan0:arm64 (9.1.0-10) ... Setting up libmaus2-2:arm64 (2.0.653-1) ... Setting up debhelper (12.3) ... Setting up libubsan1:arm64 (9.1.0-10) ... Setting up libmaus2-dev:arm64 (2.0.653-1) ... Setting up libgcc-8-dev:arm64 (8.3.0-19) ... Setting up libstdc++-8-dev:arm64 (8.3.0-19) ... Setting up sbuild-build-depends-biobambam2-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190727-1 dpkg-dev_1.19.7 g++-8_8.3.0-19 gcc-8_8.3.0-19 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-arm64-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-arm64-cross_9.1.0-8cross1 linux-libc-dev_5.2.6-1 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190727-1 binutils-aarch64-linux-gnu_2.32.51.20190727-1 binutils-common_2.32.51.20190727-1 binutils-x86-64-linux-gnu_2.32.51.20190727-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.6 bzip2_1.0.6-9.2 coreutils_8.30-3+b1 cpp_4:8.3.0-1 cpp-8_8.3.0-19 cpp-8-aarch64-linux-gnu_8.3.0-19cross1 cpp-aarch64-linux-gnu_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.6 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.3 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.4.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.12.20190723-1 e2fsprogs_1.45.3-4 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.6.0+git+20190510-2 g++_4:8.3.0-1 g++-8_8.3.0-19 g++-8-aarch64-linux-gnu_8.3.0-19cross1 g++-aarch64-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-19 gcc-8-aarch64-linux-gnu_8.3.0-19cross1 gcc-8-aarch64-linux-gnu-base_8.3.0-19cross1 gcc-8-base_8.3.0-19 gcc-8-cross-base_8.3.0-19cross1 gcc-9-base_9.1.0-10 gcc-9-cross-base_9.1.0-8cross1 gcc-aarch64-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_9.1.0-10 libasan5-arm64-cross_9.1.0-8cross1 libatomic1_9.1.0-10 libatomic1-arm64-cross_9.1.0-8cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190727-1 libblkid1_2.34-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-arm64-cross_2.28-10cross3 libc6-dev_2.28-10 libc6-dev-arm64-cross_2.28-10cross3 libcap-ng0_0.7.9-2 libcc1-0_9.1.0-10 libcom-err2_1.45.3-4 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.3-4 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.4.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-19 libgcc-8-dev-arm64-cross_8.3.0-19cross1 libgcc1_1:9.1.0-10 libgcc1-arm64-cross_1:9.1.0-8cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4+b1 libgdbm6_1.18.1-4+b1 libglib2.0-0_2.60.6-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-3 libgomp1_9.1.0-10 libgomp1-arm64-cross_9.1.0-8cross1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.1.0-10 libitm1-arm64-cross_9.1.0-8cross1 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.1.0-10 liblsan0-arm64-cross_9.1.0-8cross1 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmaus2-2_2.0.653-1 libmaus2-dev_2.0.653-1 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-19 libncurses6_6.1+20190713-2 libncursesw6_6.1+20190713-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_9.1.0-10 libseccomp2_2.4.1-2 libselinux1_2.9-2+b1 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.3-4 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-arm64-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-arm64-cross_9.1.0-8cross1 libsub-override-perl_0.09-2 libsystemd0_241-7 libtasn1-6_4.14-2 libtinfo6_6.1+20190713-2 libtool_2.4.6-10 libtsan0_9.1.0-10 libtsan0-arm64-cross_9.1.0-8cross1 libubsan1_9.1.0-10 libubsan1-arm64-cross_9.1.0-8cross1 libuchardet0_0.0.6-3 libudev1_241-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_5.2.6-1 linux-libc-dev-arm64-cross_4.19.37-5cross3 login_1:4.7-2 logsave_1.45.3-4 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6.1-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190713-2 ncurses-bin_6.1+20190713-2 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-biobambam2-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.95-4 tar_1.30+dfsg-6+b1 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Aug 7 10:04:14 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./biobambam2_2.0.128-1.dsc dpkg-source: info: extracting biobambam2 in /<> dpkg-source: info: unpacking biobambam2_2.0.128.orig.tar.bz2 dpkg-source: info: unpacking biobambam2_2.0.128-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-cc100eb3-2f1c-47ff-9bda-232cb7807a29 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package biobambam2 dpkg-buildpackage: info: source version 2.0.128-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:3: installing './compile' configure.ac:5: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking target system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by aarch64-linux-gnu-gcc... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/aarch64-linux-gnu-nm -B checking the name lister (/usr/bin/aarch64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/aarch64-linux-gnu/bin/ld option to reload object files... -r checking for aarch64-linux-gnu-objdump... aarch64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for aarch64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-linux-gnu-ar... aarch64-linux-gnu-ar checking for archiver @FILE support... @ checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/aarch64-linux-gnu-nm -B output from aarch64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for aarch64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if aarch64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for aarch64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-gcc static flag -static works... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-gcc linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... (cached) aarch64-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of aarch64-linux-gnu-gcc... none checking whether we are cross compiling... yes checking for aarch64-linux-gnu-gcc... (cached) aarch64-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether aarch64-linux-gnu-gcc accepts -g... (cached) yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... (cached) yes checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking how to run the C++ preprocessor... aarch64-linux-gnu-g++ -E checking for ld used by aarch64-linux-gnu-g++... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking for aarch64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-g++ static flag -static works... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of aarch64-linux-gnu-g++... none checking whether the C++ compiler supports the -fsanitize=address flag... yes configure: Adding optimisation options to C compiler aarch64-linux-gnu-gcc flags, full list now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security configure: Adding optimisation options to C++ compiler aarch64-linux-gnu-g++ flags, full list now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security checking for aarch64-linux-gnu-pkg-config... /usr/bin/aarch64-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for ANSI C header files... (cached) yes checking for libmaus2... yes checking for libmaus2digests... yes checking for libmaus2seqchksumsfactory... yes checking whether we can compile a program using libmaus2... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE... yes checking whether libmaus2 has support for io_lib... no checking whether libmaus2 has support for iRODS... no checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for xerces_c... no configure: Using flags -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C compiler aarch64-linux-gnu-gcc configure: Using flags -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C++ compiler aarch64-linux-gnu-g++ checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/biobambam2/BamBamConfig.hpp config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtofastq-bamtofastq.o `test -f 'programs/bamtofastq.cpp' || echo './'`programs/bamtofastq.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtofastq-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicates-bammarkduplicates.o `test -f 'programs/bammarkduplicates.cpp' || echo './'`programs/bammarkduplicates.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsort-bamsort.o `test -f 'programs/bamsort.cpp' || echo './'`programs/bamsort.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammaskflags-bammaskflags.o `test -f 'programs/bammaskflags.cpp' || echo './'`programs/bammaskflags.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammaskflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrecompress-bamrecompress.o `test -f 'programs/bamrecompress.cpp' || echo './'`programs/bamrecompress.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrecompress-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterfind-bamadapterfind.o `test -f 'programs/bamadapterfind.cpp' || echo './'`programs/bamadapterfind.cpp programs/bamadapterfind.cpp: In destructor 'LimitedLockedHeap::ScopeLimitedMutexLock::~ScopeLimitedMutexLock()': programs/bamadapterfind.cpp:189:11: warning: throw will always call terminate() [-Wterminate] throw lme; ^~~ programs/bamadapterfind.cpp:189:11: note: in C++11 destructors default to noexcept aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilteraux-bamfilteraux.o `test -f 'programs/bamfilteraux.cpp' || echo './'`programs/bamfilteraux.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilteraux-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxsort-bamauxsort.o `test -f 'programs/bamauxsort.cpp' || echo './'`programs/bamauxsort.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterclip-bamadapterclip.o `test -f 'programs/bamadapterclip.cpp' || echo './'`programs/bamadapterclip.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterclip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterclip-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamadapterclip programs/bamadapterclip-bamadapterclip.o biobambam2/bamadapterclip-Licensing.o biobambam2/bamadapterclip-ClipAdapters.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamadapterclip programs/bamadapterclip-bamadapterclip.o biobambam2/bamadapterclip-Licensing.o biobambam2/bamadapterclip-ClipAdapters.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamcollate2-bamcollate2.o `test -f 'programs/bamcollate2.cpp' || echo './'`programs/bamcollate2.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcollate2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcollate2-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcollate2-ResetAlignment.o `test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamcollate2 programs/bamcollate2-bamcollate2.o biobambam2/bamcollate2-Licensing.o biobambam2/bamcollate2-AttachRank.o biobambam2/bamcollate2-ResetAlignment.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamcollate2 programs/bamcollate2-bamcollate2.o biobambam2/bamcollate2-Licensing.o biobambam2/bamcollate2-AttachRank.o biobambam2/bamcollate2-ResetAlignment.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12auxmerge-bam12auxmerge.o `test -f 'programs/bam12auxmerge.cpp' || echo './'`programs/bam12auxmerge.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-Split12.o `test -f 'biobambam2/Split12.cpp' || echo './'`biobambam2/Split12.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-Strip12.o `test -f 'biobambam2/Strip12.cpp' || echo './'`biobambam2/Strip12.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-ClipReinsert.o `test -f 'biobambam2/ClipReinsert.cpp' || echo './'`biobambam2/ClipReinsert.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-zzToName.o `test -f 'biobambam2/zzToName.cpp' || echo './'`biobambam2/zzToName.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bam12auxmerge programs/bam12auxmerge-bam12auxmerge.o biobambam2/bam12auxmerge-Licensing.o biobambam2/bam12auxmerge-Split12.o biobambam2/bam12auxmerge-Strip12.o biobambam2/bam12auxmerge-ClipReinsert.o biobambam2/bam12auxmerge-zzToName.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bam12auxmerge programs/bam12auxmerge-bam12auxmerge.o biobambam2/bam12auxmerge-Licensing.o biobambam2/bam12auxmerge-Split12.o biobambam2/bam12auxmerge-Strip12.o biobambam2/bam12auxmerge-ClipReinsert.o biobambam2/bam12auxmerge-zzToName.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12split-bam12split.o `test -f 'programs/bam12split.cpp' || echo './'`programs/bam12split.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12split-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12split-Split12.o `test -f 'biobambam2/Split12.cpp' || echo './'`biobambam2/Split12.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bam12split programs/bam12split-bam12split.o biobambam2/bam12split-Licensing.o biobambam2/bam12split-Split12.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bam12split programs/bam12split-bam12split.o biobambam2/bam12split-Licensing.o biobambam2/bam12split-Split12.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12strip-bam12strip.o `test -f 'programs/bam12strip.cpp' || echo './'`programs/bam12strip.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12strip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12strip-Strip12.o `test -f 'biobambam2/Strip12.cpp' || echo './'`biobambam2/Strip12.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bam12strip programs/bam12strip-bam12strip.o biobambam2/bam12strip-Licensing.o biobambam2/bam12strip-Strip12.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bam12strip programs/bam12strip-bam12strip.o biobambam2/bam12strip-Licensing.o biobambam2/bam12strip-Strip12.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreset-bamreset.o `test -f 'programs/bamreset.cpp' || echo './'`programs/bamreset.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreset-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreset-ResetAlignment.o `test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamreset programs/bamreset-bamreset.o biobambam2/bamreset-Licensing.o biobambam2/bamreset-ResetAlignment.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamreset programs/bamreset-bamreset.o biobambam2/bamreset-Licensing.o biobambam2/bamreset-ResetAlignment.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrank-bamrank.o `test -f 'programs/bamrank.cpp' || echo './'`programs/bamrank.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrank-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrank-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrank programs/bamrank-bamrank.o biobambam2/bamrank-Licensing.o biobambam2/bamrank-AttachRank.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrank programs/bamrank-bamrank.o biobambam2/bamrank-Licensing.o biobambam2/bamrank-AttachRank.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time 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'./'`biobambam2/ClipReinsert.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamclipreinsert programs/bamclipreinsert-bamclipreinsert.o biobambam2/bamclipreinsert-Licensing.o biobambam2/bamclipreinsert-ClipReinsert.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamclipreinsert programs/bamclipreinsert-bamclipreinsert.o biobambam2/bamclipreinsert-Licensing.o biobambam2/bamclipreinsert-ClipReinsert.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamclipXT-bamclipXT.o `test -f 'programs/bamclipXT.cpp' || echo './'`programs/bamclipXT.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamclipXT-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamclipXT programs/bamclipXT-bamclipXT.o biobambam2/bamclipXT-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamclipXT programs/bamclipXT-bamclipXT.o biobambam2/bamclipXT-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamzztoname-bamzztoname.o `test -f 'programs/bamzztoname.cpp' || echo './'`programs/bamzztoname.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamzztoname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamzztoname-zzToName.o `test -f 'biobambam2/zzToName.cpp' || echo './'`biobambam2/zzToName.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamzztoname programs/bamzztoname-bamzztoname.o biobambam2/bamzztoname-Licensing.o biobambam2/bamzztoname-zzToName.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamzztoname programs/bamzztoname-bamzztoname.o biobambam2/bamzztoname-Licensing.o biobambam2/bamzztoname-zzToName.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamindex-bamindex.o `test -f 'programs/bamindex.cpp' || echo './'`programs/bamindex.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamindex-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterflags-bamfilterflags.o `test -f 'programs/bamfilterflags.cpp' || echo './'`programs/bamfilterflags.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterflags programs/bamfilterflags-bamfilterflags.o biobambam2/bamfilterflags-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterflags programs/bamfilterflags-bamfilterflags.o biobambam2/bamfilterflags-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterrg-bamfilterrg.o `test -f 'programs/bamfilterrg.cpp' || echo './'`programs/bamfilterrg.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterrg-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterrg programs/bamfilterrg-bamfilterrg.o biobambam2/bamfilterrg-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterrg programs/bamfilterrg-bamfilterrg.o biobambam2/bamfilterrg-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdownsamplerandom-bamdownsamplerandom.o `test -f 'programs/bamdownsamplerandom.cpp' || echo './'`programs/bamdownsamplerandom.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdownsamplerandom-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamdownsamplerandom programs/bamdownsamplerandom-bamdownsamplerandom.o biobambam2/bamdownsamplerandom-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdownsamplerandom programs/bamdownsamplerandom-bamdownsamplerandom.o biobambam2/bamdownsamplerandom-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicates2-bammarkduplicates2.o `test -f 'programs/bammarkduplicates2.cpp' || echo './'`programs/bammarkduplicates2.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicates2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammarkduplicates2 programs/bammarkduplicates2-bammarkduplicates2.o biobambam2/bammarkduplicates2-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicates2 programs/bammarkduplicates2-bammarkduplicates2.o biobambam2/bammarkduplicates2-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamcat-bamcat.o `test -f 'programs/bamcat.cpp' || echo './'`programs/bamcat.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamcat programs/bamcat-bamcat.o biobambam2/bamcat-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamcat programs/bamcat-bamcat.o biobambam2/bamcat-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammerge-bammerge.o `test -f 'programs/bammerge.cpp' || echo './'`programs/bammerge.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammerge programs/bammerge-bammerge.o biobambam2/bammerge-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammerge programs/bammerge-bammerge.o biobambam2/bammerge-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsplit-bamsplit.o `test -f 'programs/bamsplit.cpp' || echo './'`programs/bamsplit.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsplit-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsplit programs/bamsplit-bamsplit.o biobambam2/bamsplit-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsplit programs/bamsplit-bamsplit.o biobambam2/bamsplit-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastsplit-bamfastsplit.o `test -f 'programs/bamfastsplit.cpp' || echo './'`programs/bamfastsplit.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastsplit-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfastsplit programs/bamfastsplit-bamfastsplit.o biobambam2/bamfastsplit-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfastsplit programs/bamfastsplit-bamfastsplit.o biobambam2/bamfastsplit-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsplitdiv-bamsplitdiv.o `test -f 'programs/bamsplitdiv.cpp' || echo './'`programs/bamsplitdiv.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsplitdiv-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsplitdiv programs/bamsplitdiv-bamsplitdiv.o biobambam2/bamsplitdiv-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsplitdiv programs/bamsplitdiv-bamsplitdiv.o biobambam2/bamsplitdiv-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamchecksort-bamchecksort.o `test -f 'programs/bamchecksort.cpp' || echo './'`programs/bamchecksort.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamchecksort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamchecksort programs/bamchecksort-bamchecksort.o biobambam2/bamchecksort-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamchecksort programs/bamchecksort-bamchecksort.o biobambam2/bamchecksort-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastqtobam-fastqtobam.o `test -f 'programs/fastqtobam.cpp' || echo './'`programs/fastqtobam.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobam-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastqtobam programs/fastqtobam-fastqtobam.o biobambam2/fastqtobam-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastqtobam programs/fastqtobam-fastqtobam.o biobambam2/fastqtobam-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixmateinformation-bamfixmateinformation.o `test -f 'programs/bamfixmateinformation.cpp' || echo './'`programs/bamfixmateinformation.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixmateinformation-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfixmateinformation programs/bamfixmateinformation-bamfixmateinformation.o biobambam2/bamfixmateinformation-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfixmateinformation programs/bamfixmateinformation-bamfixmateinformation.o biobambam2/bamfixmateinformation-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamseqchksum-bamseqchksum.o `test -f 'programs/bamseqchksum.cpp' || echo './'`programs/bamseqchksum.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamseqchksum-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamseqchksum programs/bamseqchksum-bamseqchksum.o biobambam2/bamseqchksum-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamseqchksum programs/bamseqchksum-bamseqchksum.o biobambam2/bamseqchksum-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/normalisefasta-normalisefasta.o `test -f 'programs/normalisefasta.cpp' || echo './'`programs/normalisefasta.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/normalisefasta-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o normalisefasta programs/normalisefasta-normalisefasta.o biobambam2/normalisefasta-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o normalisefasta programs/normalisefasta-normalisefasta.o biobambam2/normalisefasta-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterheader-bamfilterheader.o `test -f 'programs/bamfilterheader.cpp' || echo './'`programs/bamfilterheader.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterheader-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterheader programs/bamfilterheader-bamfilterheader.o biobambam2/bamfilterheader-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl 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`test -f 'programs/bamfilterheader2.cpp' || echo './'`programs/bamfilterheader2.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterheader2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterheader2 programs/bamfilterheader2-bamfilterheader2.o biobambam2/bamfilterheader2-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory 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aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammdnm-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammdnm programs/bammdnm-bammdnm.o biobambam2/bammdnm-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammdnm programs/bammdnm-bammdnm.o biobambam2/bammdnm-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammapdist-bammapdist.o `test -f 'programs/bammapdist.cpp' || echo './'`programs/bammapdist.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammapdist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammapdist programs/bammapdist-bammapdist.o biobambam2/bammapdist-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammapdist programs/bammapdist-bammapdist.o biobambam2/bammapdist-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamvalidate-bamvalidate.o `test -f 'programs/bamvalidate.cpp' || echo './'`programs/bamvalidate.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamvalidate-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamvalidate programs/bamvalidate-bamvalidate.o biobambam2/bamvalidate-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamvalidate programs/bamvalidate-bamvalidate.o biobambam2/bamvalidate-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamflagsplit-bamflagsplit.o `test -f 'programs/bamflagsplit.cpp' || echo './'`programs/bamflagsplit.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamflagsplit-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamflagsplit programs/bamflagsplit-bamflagsplit.o biobambam2/bamflagsplit-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamflagsplit programs/bamflagsplit-bamflagsplit.o biobambam2/bamflagsplit-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamintervalcomment-bamintervalcomment.o `test -f 'programs/bamintervalcomment.cpp' || echo './'`programs/bamintervalcomment.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamintervalcomment-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamintervalcomment programs/bamintervalcomment-bamintervalcomment.o biobambam2/bamintervalcomment-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamintervalcomment programs/bamintervalcomment-bamintervalcomment.o biobambam2/bamintervalcomment-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamintervalcommenthist-bamintervalcommenthist.o `test -f 'programs/bamintervalcommenthist.cpp' || echo './'`programs/bamintervalcommenthist.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamintervalcommenthist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamintervalcommenthist programs/bamintervalcommenthist-bamintervalcommenthist.o biobambam2/bamintervalcommenthist-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamintervalcommenthist programs/bamintervalcommenthist-bamintervalcommenthist.o biobambam2/bamintervalcommenthist-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o `test -f 'programs/bamstreamingmarkduplicates.cpp' || echo './'`programs/bamstreamingmarkduplicates.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamstreamingmarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamstreamingmarkduplicates programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o biobambam2/bamstreamingmarkduplicates-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamstreamingmarkduplicates programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o biobambam2/bamstreamingmarkduplicates-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamheap2-bamheap2.o `test -f 'programs/bamheap2.cpp' || echo './'`programs/bamheap2.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamheap2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamheap2 programs/bamheap2-bamheap2.o biobambam2/bamheap2-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamheap2 programs/bamheap2-bamheap2.o biobambam2/bamheap2-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamalignfrac-bamalignfrac.o `test -f 'programs/bamalignfrac.cpp' || echo './'`programs/bamalignfrac.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamalignfrac-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamalignfrac programs/bamalignfrac-bamalignfrac.o biobambam2/bamalignfrac-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamalignfrac programs/bamalignfrac-bamalignfrac.o biobambam2/bamalignfrac-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilternames-bamfilternames.o `test -f 'programs/bamfilternames.cpp' || echo './'`programs/bamfilternames.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilternames-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilternames programs/bamfilternames-bamfilternames.o biobambam2/bamfilternames-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilternames programs/bamfilternames-bamfilternames.o biobambam2/bamfilternames-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsormadup-bamsormadup.o `test -f 'programs/bamsormadup.cpp' || echo './'`programs/bamsormadup.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsormadup-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsormadup programs/bamsormadup-bamsormadup.o biobambam2/bamsormadup-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsormadup programs/bamsormadup-bamsormadup.o biobambam2/bamsormadup-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamexplode-bamexplode.o `test -f 'programs/bamexplode.cpp' || echo './'`programs/bamexplode.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamexplode-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamexplode programs/bamexplode-bamexplode.o biobambam2/bamexplode-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamexplode programs/bamexplode-bamexplode.o biobambam2/bamexplode-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamexploderef-bamexploderef.o `test -f 'programs/bamexploderef.cpp' || echo './'`programs/bamexploderef.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamexploderef-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamexploderef programs/bamexploderef-bamexploderef.o biobambam2/bamexploderef-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamexploderef programs/bamexploderef-bamexploderef.o biobambam2/bamexploderef-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastexploderef-bamfastexploderef.o `test -f 'programs/bamfastexploderef.cpp' || echo './'`programs/bamfastexploderef.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastexploderef-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfastexploderef programs/bamfastexploderef-bamfastexploderef.o biobambam2/bamfastexploderef-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfastexploderef programs/bamfastexploderef-bamfastexploderef.o biobambam2/bamfastexploderef-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastnumextract-bamfastnumextract.o `test -f 'programs/bamfastnumextract.cpp' || echo './'`programs/bamfastnumextract.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastnumextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfastnumextract programs/bamfastnumextract-bamfastnumextract.o biobambam2/bamfastnumextract-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfastnumextract programs/bamfastnumextract-bamfastnumextract.o biobambam2/bamfastnumextract-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastqtobampar-fastqtobampar.o `test -f 'programs/fastqtobampar.cpp' || echo './'`programs/fastqtobampar.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobampar-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastqtobampar programs/fastqtobampar-fastqtobampar.o biobambam2/fastqtobampar-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastqtobampar programs/fastqtobampar-fastqtobampar.o biobambam2/fastqtobampar-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamranksort-bamranksort.o `test -f 'programs/bamranksort.cpp' || echo './'`programs/bamranksort.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamranksort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamranksort programs/bamranksort-bamranksort.o biobambam2/bamranksort-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamranksort programs/bamranksort-bamranksort.o biobambam2/bamranksort-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtagconversion-bamtagconversion.o `test -f 'programs/bamtagconversion.cpp' || echo './'`programs/bamtagconversion.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtagconversion-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamtagconversion programs/bamtagconversion-bamtagconversion.o biobambam2/bamtagconversion-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtagconversion programs/bamtagconversion-bamtagconversion.o biobambam2/bamtagconversion-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastaexplode-fastaexplode.o `test -f 'programs/fastaexplode.cpp' || echo './'`programs/fastaexplode.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastaexplode-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastaexplode programs/fastaexplode-fastaexplode.o biobambam2/fastaexplode-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastaexplode programs/fastaexplode-fastaexplode.o biobambam2/fastaexplode-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrecalculatecigar-bamrecalculatecigar.o `test -f 'programs/bamrecalculatecigar.cpp' || echo './'`programs/bamrecalculatecigar.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrecalculatecigar-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrecalculatecigar programs/bamrecalculatecigar-bamrecalculatecigar.o biobambam2/bamrecalculatecigar-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrecalculatecigar programs/bamrecalculatecigar-bamrecalculatecigar.o biobambam2/bamrecalculatecigar-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfiltermc-bamfiltermc.o `test -f 'programs/bamfiltermc.cpp' || echo './'`programs/bamfiltermc.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfiltermc-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfiltermc programs/bamfiltermc-bamfiltermc.o biobambam2/bamfiltermc-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfiltermc programs/bamfiltermc-bamfiltermc.o biobambam2/bamfiltermc-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamnumericalindex-bamnumericalindex.o `test -f 'programs/bamnumericalindex.cpp' || echo './'`programs/bamnumericalindex.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamnumericalindex-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamnumericalindex programs/bamnumericalindex-bamnumericalindex.o biobambam2/bamnumericalindex-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamnumericalindex programs/bamnumericalindex-bamnumericalindex.o biobambam2/bamnumericalindex-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamnumericalindexstats-bamnumericalindexstats.o `test -f 'programs/bamnumericalindexstats.cpp' || echo './'`programs/bamnumericalindexstats.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamnumericalindexstats-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamnumericalindexstats programs/bamnumericalindexstats-bamnumericalindexstats.o biobambam2/bamnumericalindexstats-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamnumericalindexstats programs/bamnumericalindexstats-bamnumericalindexstats.o biobambam2/bamnumericalindexstats-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicatesopt-bammarkduplicatesopt.o `test -f 'programs/bammarkduplicatesopt.cpp' || echo './'`programs/bammarkduplicatesopt.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicatesopt-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammarkduplicatesopt programs/bammarkduplicatesopt-bammarkduplicatesopt.o biobambam2/bammarkduplicatesopt-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicatesopt programs/bammarkduplicatesopt-bammarkduplicatesopt.o biobambam2/bammarkduplicatesopt-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterlength-bamfilterlength.o `test -f 'programs/bamfilterlength.cpp' || echo './'`programs/bamfilterlength.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterlength-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterlength programs/bamfilterlength-bamfilterlength.o biobambam2/bamfilterlength-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterlength programs/bamfilterlength-bamfilterlength.o biobambam2/bamfilterlength-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxmerge-bamauxmerge.o `test -f 'programs/bamauxmerge.cpp' || echo './'`programs/bamauxmerge.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxmerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamauxmerge programs/bamauxmerge-bamauxmerge.o biobambam2/bamauxmerge-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxmerge programs/bamauxmerge-bamauxmerge.o biobambam2/bamauxmerge-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrefinterval-bamrefinterval.o `test -f 'programs/bamrefinterval.cpp' || echo './'`programs/bamrefinterval.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrefinterval-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrefinterval programs/bamrefinterval-bamrefinterval.o biobambam2/bamrefinterval-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrefinterval programs/bamrefinterval-bamrefinterval.o biobambam2/bamrefinterval-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamscrapcount-bamscrapcount.o `test -f 'programs/bamscrapcount.cpp' || echo './'`programs/bamscrapcount.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamscrapcount-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamscrapcount programs/bamscrapcount-bamscrapcount.o biobambam2/bamscrapcount-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamscrapcount programs/bamscrapcount-bamscrapcount.o biobambam2/bamscrapcount-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterrefid-bamfilterrefid.o `test -f 'programs/bamfilterrefid.cpp' || echo './'`programs/bamfilterrefid.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterrefid-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterrefid programs/bamfilterrefid-bamfilterrefid.o biobambam2/bamfilterrefid-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterrefid programs/bamfilterrefid-bamfilterrefid.o biobambam2/bamfilterrefid-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfillquery-bamfillquery.o `test -f 'programs/bamfillquery.cpp' || echo './'`programs/bamfillquery.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfillquery-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfillquery-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfillquery programs/bamfillquery-bamfillquery.o biobambam2/bamfillquery-Licensing.o biobambam2/bamfillquery-AttachRank.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfillquery programs/bamfillquery-bamfillquery.o biobambam2/bamfillquery-Licensing.o biobambam2/bamfillquery-AttachRank.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrefextract-bamrefextract.o `test -f 'programs/bamrefextract.cpp' || echo './'`programs/bamrefextract.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrefextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrefextract programs/bamrefextract-bamrefextract.o biobambam2/bamrefextract-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrefextract programs/bamrefextract-bamrefextract.o biobambam2/bamrefextract-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastqtobam2-fastqtobam2.o `test -f 'programs/fastqtobam2.cpp' || echo './'`programs/fastqtobam2.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobam2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobam2-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastqtobam2 programs/fastqtobam2-fastqtobam2.o biobambam2/fastqtobam2-Licensing.o biobambam2/fastqtobam2-KmerPoisson.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastqtobam2 programs/fastqtobam2-fastqtobam2.o biobambam2/fastqtobam2-Licensing.o biobambam2/fastqtobam2-KmerPoisson.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxmerge2-bamauxmerge2.o `test -f 'programs/bamauxmerge2.cpp' || echo './'`programs/bamauxmerge2.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxmerge2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxmerge2-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamauxmerge2 programs/bamauxmerge2-bamauxmerge2.o biobambam2/bamauxmerge2-Licensing.o biobambam2/bamauxmerge2-KmerPoisson.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxmerge2 programs/bamauxmerge2-bamauxmerge2.o biobambam2/bamauxmerge2-Licensing.o biobambam2/bamauxmerge2-KmerPoisson.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreheader-bamreheader.o `test -f 'programs/bamreheader.cpp' || echo './'`programs/bamreheader.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamreheader programs/bamreheader-bamreheader.o biobambam2/bamreheader-Licensing.o biobambam2/bamreheader-ReadHeader.o biobambam2/bamreheader-RunEOFFilter.o biobambam2/bamreheader-UpdateNumericalIndex.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamreheader programs/bamreheader-bamreheader.o biobambam2/bamreheader-Licensing.o biobambam2/bamreheader-ReadHeader.o biobambam2/bamreheader-RunEOFFilter.o biobambam2/bamreheader-UpdateNumericalIndex.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreplacechecksums-bamreplacechecksums.o `test -f 'programs/bamreplacechecksums.cpp' || echo './'`programs/bamreplacechecksums.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamreplacechecksums programs/bamreplacechecksums-bamreplacechecksums.o biobambam2/bamreplacechecksums-Licensing.o biobambam2/bamreplacechecksums-ReadHeader.o biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamreplacechecksums programs/bamreplacechecksums-bamreplacechecksums.o biobambam2/bamreplacechecksums-Licensing.o biobambam2/bamreplacechecksums-ReadHeader.o biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastcat-bamfastcat.o `test -f 'programs/bamfastcat.cpp' || echo './'`programs/bamfastcat.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfastcat programs/bamfastcat-bamfastcat.o biobambam2/bamfastcat-Licensing.o biobambam2/bamfastcat-ReadHeader.o biobambam2/bamfastcat-RunEOFFilter.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfastcat programs/bamfastcat-bamfastcat.o biobambam2/bamfastcat-Licensing.o biobambam2/bamfastcat-ReadHeader.o biobambam2/bamfastcat-RunEOFFilter.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcffilterinfo-vcffilterinfo.o `test -f 'programs/vcffilterinfo.cpp' || echo './'`programs/vcffilterinfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcffilterinfo-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcffilterinfo programs/vcffilterinfo-vcffilterinfo.o biobambam2/vcffilterinfo-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcffilterinfo programs/vcffilterinfo-vcffilterinfo.o biobambam2/vcffilterinfo-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfpatchcontigprepend-vcfpatchcontigprepend.o `test -f 'programs/vcfpatchcontigprepend.cpp' || echo './'`programs/vcfpatchcontigprepend.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfpatchcontigprepend-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcfpatchcontigprepend programs/vcfpatchcontigprepend-vcfpatchcontigprepend.o biobambam2/vcfpatchcontigprepend-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcfpatchcontigprepend programs/vcfpatchcontigprepend-vcfpatchcontigprepend.o biobambam2/vcfpatchcontigprepend-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/populaterefcache-populaterefcache.o `test -f 'programs/populaterefcache.cpp' || echo './'`programs/populaterefcache.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/populaterefcache-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o populaterefcache programs/populaterefcache-populaterefcache.o biobambam2/populaterefcache-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o populaterefcache programs/populaterefcache-populaterefcache.o biobambam2/populaterefcache-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bambisect-bambisect.o `test -f 'programs/bambisect.cpp' || echo './'`programs/bambisect.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bambisect-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bambisect programs/bambisect-bambisect.o biobambam2/bambisect-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bambisect programs/bambisect-bambisect.o biobambam2/bambisect-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfconcat-vcfconcat.o `test -f 'programs/vcfconcat.cpp' || echo './'`programs/vcfconcat.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfconcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcfconcat programs/vcfconcat-vcfconcat.o biobambam2/vcfconcat-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcfconcat programs/vcfconcat-vcfconcat.o biobambam2/vcfconcat-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfsort-vcfsort.o `test -f 'programs/vcfsort.cpp' || echo './'`programs/vcfsort.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcfsort programs/vcfsort-vcfsort.o biobambam2/vcfsort-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcfsort programs/vcfsort-vcfsort.o biobambam2/vcfsort-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfiltereofblocks-bamfiltereofblocks.o `test -f 'programs/bamfiltereofblocks.cpp' || echo './'`programs/bamfiltereofblocks.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfiltereofblocks-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfiltereofblocks-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfiltereofblocks programs/bamfiltereofblocks-bamfiltereofblocks.o biobambam2/bamfiltereofblocks-Licensing.o biobambam2/bamfiltereofblocks-RunEOFFilter.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfiltereofblocks programs/bamfiltereofblocks-bamfiltereofblocks.o biobambam2/bamfiltereofblocks-Licensing.o biobambam2/bamfiltereofblocks-RunEOFFilter.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdepth-bamdepth.o `test -f 'programs/bamdepth.cpp' || echo './'`programs/bamdepth.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepth-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepth-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamdepth programs/bamdepth-bamdepth.o biobambam2/bamdepth-Licensing.o biobambam2/bamdepth-DepthInterval.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdepth programs/bamdepth-bamdepth.o biobambam2/bamdepth-Licensing.o biobambam2/bamdepth-DepthInterval.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdepthintersect-bamdepthintersect.o `test -f 'programs/bamdepthintersect.cpp' || echo './'`programs/bamdepthintersect.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepthintersect-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepthintersect-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamdepthintersect programs/bamdepthintersect-bamdepthintersect.o biobambam2/bamdepthintersect-Licensing.o biobambam2/bamdepthintersect-DepthInterval.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdepthintersect programs/bamdepthintersect-bamdepthintersect.o biobambam2/bamdepthintersect-Licensing.o biobambam2/bamdepthintersect-DepthInterval.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilter-bamfilter.o `test -f 'programs/bamfilter.cpp' || echo './'`programs/bamfilter.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilter-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilter programs/bamfilter-bamfilter.o biobambam2/bamfilter-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilter programs/bamfilter-bamfilter.o biobambam2/bamfilter-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixmatecoordinates-bamfixmatecoordinates.o `test -f 'programs/bamfixmatecoordinates.cpp' || echo './'`programs/bamfixmatecoordinates.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixmatecoordinates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfixmatecoordinates programs/bamfixmatecoordinates-bamfixmatecoordinates.o biobambam2/bamfixmatecoordinates-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfixmatecoordinates programs/bamfixmatecoordinates-bamfixmatecoordinates.o biobambam2/bamfixmatecoordinates-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o `test -f 'programs/bamfixmatecoordinatesnamesorted.cpp' || echo './'`programs/bamfixmatecoordinatesnamesorted.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfixmatecoordinatesnamesorted programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfixmatecoordinatesnamesorted programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtoname-bamtoname.o `test -f 'programs/bamtoname.cpp' || echo './'`programs/bamtoname.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtoname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamtoname programs/bamtoname-bamtoname.o biobambam2/bamtoname-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtoname programs/bamtoname-bamtoname.o biobambam2/bamtoname-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdisthist-bamdisthist.o `test -f 'programs/bamdisthist.cpp' || echo './'`programs/bamdisthist.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdisthist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamdisthist programs/bamdisthist-bamdisthist.o biobambam2/bamdisthist-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdisthist programs/bamdisthist-bamdisthist.o biobambam2/bamdisthist-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastabgzfextract-fastabgzfextract.o `test -f 'programs/fastabgzfextract.cpp' || echo './'`programs/fastabgzfextract.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastabgzfextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastabgzfextract programs/fastabgzfextract-fastabgzfextract.o biobambam2/fastabgzfextract-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastabgzfextract programs/fastabgzfextract-fastabgzfextract.o biobambam2/fastabgzfextract-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamheap-bamheap.o `test -f 'programs/bamheap.cpp' || echo './'`programs/bamheap.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamheap-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamheap programs/bamheap-bamheap.o biobambam2/bamheap-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamheap programs/bamheap-bamheap.o biobambam2/bamheap-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfrontback-bamfrontback.o `test -f 'programs/bamfrontback.cpp' || echo './'`programs/bamfrontback.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfrontback-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfrontback-ResetAlignment.o `test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfrontback programs/bamfrontback-bamfrontback.o biobambam2/bamfrontback-Licensing.o biobambam2/bamfrontback-ResetAlignment.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfrontback programs/bamfrontback-bamfrontback.o biobambam2/bamfrontback-Licensing.o biobambam2/bamfrontback-ResetAlignment.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamconsensus-bamconsensus.o `test -f 'programs/bamconsensus.cpp' || echo './'`programs/bamconsensus.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamconsensus-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamconsensus programs/bamconsensus-bamconsensus.o biobambam2/bamconsensus-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamconsensus programs/bamconsensus-bamconsensus.o biobambam2/bamconsensus-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrandomtag-bamrandomtag.o `test -f 'programs/bamrandomtag.cpp' || echo './'`programs/bamrandomtag.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrandomtag-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrandomtag programs/bamrandomtag-bamrandomtag.o biobambam2/bamrandomtag-Licensing.o -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/aarch64-linux-gnu -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/aarch64-linux-gnu -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrandomtag programs/bamrandomtag-bamrandomtag.o biobambam2/bamrandomtag-Licensing.o -fopenmp -L/usr/lib/aarch64-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/biobambam2 AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/biobambam2/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c bamtofastq bammarkduplicates bamsort bammaskflags bamrecompress bamadapterfind bamfilteraux bamauxsort bamadapterclip bamcollate2 bam12auxmerge bam12split bam12strip bamreset bamrank bamclipreinsert bamclipXT bamzztoname bamindex bamfilterflags bamfilterrg bamdownsamplerandom bammarkduplicates2 bamcat bammerge bamsplit bamfastsplit bamsplitdiv bamchecksort fastqtobam bamfixmateinformation bamseqchksum normalisefasta bamfilterheader bamfilterheader2 bammdnm bammapdist bamvalidate bamflagsplit bamintervalcomment bamintervalcommenthist bamstreamingmarkduplicates bamheap2 bamalignfrac bamfilternames bamsormadup bamexplode bamexploderef bamfastexploderef bamfastnumextract fastqtobampar bamranksort bamtagconversion fastaexplode bamrecalculatecigar bamfiltermc bamnumericalindex bamnumericalindexstats bammarkduplicatesopt bamfilterlength bamauxmerge bamrefinterval bamscrapcount bamfilterrefid bamfillquery bamrefextract fastqtobam2 bamauxmerge2 bamreheader bamreplacechecksums bamfastcat vcffilterinfo vcfpatchcontigprepend populaterefcache bambisect vcfconcat vcfsort bamfiltereofblocks bamdepth bamdepthintersect '/<>/debian/biobambam2/usr/bin' libtool: install: /usr/bin/install -c bamtofastq /<>/debian/biobambam2/usr/bin/bamtofastq libtool: install: /usr/bin/install -c bammarkduplicates /<>/debian/biobambam2/usr/bin/bammarkduplicates libtool: install: /usr/bin/install -c bamsort /<>/debian/biobambam2/usr/bin/bamsort libtool: install: /usr/bin/install -c bammaskflags /<>/debian/biobambam2/usr/bin/bammaskflags libtool: install: /usr/bin/install -c bamrecompress /<>/debian/biobambam2/usr/bin/bamrecompress libtool: install: /usr/bin/install -c bamadapterfind /<>/debian/biobambam2/usr/bin/bamadapterfind libtool: install: /usr/bin/install -c bamfilteraux /<>/debian/biobambam2/usr/bin/bamfilteraux libtool: install: /usr/bin/install -c bamauxsort /<>/debian/biobambam2/usr/bin/bamauxsort libtool: install: /usr/bin/install -c bamadapterclip /<>/debian/biobambam2/usr/bin/bamadapterclip libtool: install: /usr/bin/install -c bamcollate2 /<>/debian/biobambam2/usr/bin/bamcollate2 libtool: install: /usr/bin/install -c bam12auxmerge /<>/debian/biobambam2/usr/bin/bam12auxmerge libtool: install: /usr/bin/install -c bam12split /<>/debian/biobambam2/usr/bin/bam12split libtool: install: /usr/bin/install -c bam12strip /<>/debian/biobambam2/usr/bin/bam12strip libtool: install: /usr/bin/install -c bamreset /<>/debian/biobambam2/usr/bin/bamreset libtool: install: /usr/bin/install -c bamrank /<>/debian/biobambam2/usr/bin/bamrank libtool: install: /usr/bin/install -c bamclipreinsert /<>/debian/biobambam2/usr/bin/bamclipreinsert libtool: install: /usr/bin/install -c bamclipXT /<>/debian/biobambam2/usr/bin/bamclipXT libtool: install: /usr/bin/install -c bamzztoname /<>/debian/biobambam2/usr/bin/bamzztoname libtool: install: /usr/bin/install -c bamindex /<>/debian/biobambam2/usr/bin/bamindex libtool: install: /usr/bin/install -c bamfilterflags /<>/debian/biobambam2/usr/bin/bamfilterflags libtool: install: /usr/bin/install -c bamfilterrg /<>/debian/biobambam2/usr/bin/bamfilterrg libtool: install: /usr/bin/install -c bamdownsamplerandom /<>/debian/biobambam2/usr/bin/bamdownsamplerandom libtool: install: /usr/bin/install -c bammarkduplicates2 /<>/debian/biobambam2/usr/bin/bammarkduplicates2 libtool: install: /usr/bin/install -c bamcat /<>/debian/biobambam2/usr/bin/bamcat libtool: install: /usr/bin/install -c bammerge /<>/debian/biobambam2/usr/bin/bammerge libtool: install: /usr/bin/install -c bamsplit /<>/debian/biobambam2/usr/bin/bamsplit libtool: install: /usr/bin/install -c bamfastsplit /<>/debian/biobambam2/usr/bin/bamfastsplit libtool: install: /usr/bin/install -c bamsplitdiv /<>/debian/biobambam2/usr/bin/bamsplitdiv libtool: install: /usr/bin/install -c bamchecksort /<>/debian/biobambam2/usr/bin/bamchecksort libtool: install: /usr/bin/install -c fastqtobam /<>/debian/biobambam2/usr/bin/fastqtobam libtool: install: /usr/bin/install -c bamfixmateinformation /<>/debian/biobambam2/usr/bin/bamfixmateinformation libtool: install: /usr/bin/install -c bamseqchksum /<>/debian/biobambam2/usr/bin/bamseqchksum libtool: install: /usr/bin/install -c normalisefasta /<>/debian/biobambam2/usr/bin/normalisefasta libtool: install: /usr/bin/install -c bamfilterheader /<>/debian/biobambam2/usr/bin/bamfilterheader libtool: install: /usr/bin/install -c bamfilterheader2 /<>/debian/biobambam2/usr/bin/bamfilterheader2 libtool: install: /usr/bin/install -c bammdnm /<>/debian/biobambam2/usr/bin/bammdnm libtool: install: /usr/bin/install -c bammapdist /<>/debian/biobambam2/usr/bin/bammapdist libtool: install: /usr/bin/install -c bamvalidate /<>/debian/biobambam2/usr/bin/bamvalidate libtool: install: /usr/bin/install -c bamflagsplit /<>/debian/biobambam2/usr/bin/bamflagsplit libtool: install: /usr/bin/install -c bamintervalcomment /<>/debian/biobambam2/usr/bin/bamintervalcomment libtool: install: /usr/bin/install -c bamintervalcommenthist /<>/debian/biobambam2/usr/bin/bamintervalcommenthist libtool: install: /usr/bin/install -c bamstreamingmarkduplicates /<>/debian/biobambam2/usr/bin/bamstreamingmarkduplicates libtool: install: /usr/bin/install -c bamheap2 /<>/debian/biobambam2/usr/bin/bamheap2 libtool: install: /usr/bin/install -c bamalignfrac /<>/debian/biobambam2/usr/bin/bamalignfrac libtool: install: /usr/bin/install -c bamfilternames /<>/debian/biobambam2/usr/bin/bamfilternames libtool: install: /usr/bin/install -c bamsormadup /<>/debian/biobambam2/usr/bin/bamsormadup libtool: install: /usr/bin/install -c bamexplode /<>/debian/biobambam2/usr/bin/bamexplode libtool: install: /usr/bin/install -c bamexploderef /<>/debian/biobambam2/usr/bin/bamexploderef libtool: install: /usr/bin/install -c bamfastexploderef /<>/debian/biobambam2/usr/bin/bamfastexploderef libtool: install: /usr/bin/install -c bamfastnumextract /<>/debian/biobambam2/usr/bin/bamfastnumextract libtool: install: /usr/bin/install -c fastqtobampar /<>/debian/biobambam2/usr/bin/fastqtobampar libtool: install: /usr/bin/install -c bamranksort /<>/debian/biobambam2/usr/bin/bamranksort libtool: install: /usr/bin/install -c bamtagconversion /<>/debian/biobambam2/usr/bin/bamtagconversion libtool: install: /usr/bin/install -c fastaexplode /<>/debian/biobambam2/usr/bin/fastaexplode libtool: install: /usr/bin/install -c bamrecalculatecigar /<>/debian/biobambam2/usr/bin/bamrecalculatecigar libtool: install: /usr/bin/install -c bamfiltermc /<>/debian/biobambam2/usr/bin/bamfiltermc libtool: install: /usr/bin/install -c bamnumericalindex /<>/debian/biobambam2/usr/bin/bamnumericalindex libtool: install: /usr/bin/install -c bamnumericalindexstats /<>/debian/biobambam2/usr/bin/bamnumericalindexstats libtool: install: /usr/bin/install -c bammarkduplicatesopt /<>/debian/biobambam2/usr/bin/bammarkduplicatesopt libtool: install: /usr/bin/install -c bamfilterlength /<>/debian/biobambam2/usr/bin/bamfilterlength libtool: install: /usr/bin/install -c bamauxmerge /<>/debian/biobambam2/usr/bin/bamauxmerge libtool: install: /usr/bin/install -c bamrefinterval /<>/debian/biobambam2/usr/bin/bamrefinterval libtool: install: /usr/bin/install -c bamscrapcount /<>/debian/biobambam2/usr/bin/bamscrapcount libtool: install: /usr/bin/install -c bamfilterrefid /<>/debian/biobambam2/usr/bin/bamfilterrefid libtool: install: /usr/bin/install -c bamfillquery /<>/debian/biobambam2/usr/bin/bamfillquery libtool: install: /usr/bin/install -c bamrefextract /<>/debian/biobambam2/usr/bin/bamrefextract libtool: install: /usr/bin/install -c fastqtobam2 /<>/debian/biobambam2/usr/bin/fastqtobam2 libtool: install: /usr/bin/install -c bamauxmerge2 /<>/debian/biobambam2/usr/bin/bamauxmerge2 libtool: install: /usr/bin/install -c bamreheader /<>/debian/biobambam2/usr/bin/bamreheader libtool: install: /usr/bin/install -c bamreplacechecksums /<>/debian/biobambam2/usr/bin/bamreplacechecksums libtool: install: /usr/bin/install -c bamfastcat /<>/debian/biobambam2/usr/bin/bamfastcat libtool: install: /usr/bin/install -c vcffilterinfo /<>/debian/biobambam2/usr/bin/vcffilterinfo libtool: install: /usr/bin/install -c vcfpatchcontigprepend /<>/debian/biobambam2/usr/bin/vcfpatchcontigprepend libtool: install: /usr/bin/install -c populaterefcache /<>/debian/biobambam2/usr/bin/populaterefcache libtool: install: /usr/bin/install -c bambisect /<>/debian/biobambam2/usr/bin/bambisect libtool: install: /usr/bin/install -c vcfconcat /<>/debian/biobambam2/usr/bin/vcfconcat libtool: install: /usr/bin/install -c vcfsort /<>/debian/biobambam2/usr/bin/vcfsort libtool: install: /usr/bin/install -c bamfiltereofblocks /<>/debian/biobambam2/usr/bin/bamfiltereofblocks libtool: install: /usr/bin/install -c bamdepth /<>/debian/biobambam2/usr/bin/bamdepth libtool: install: /usr/bin/install -c bamdepthintersect /<>/debian/biobambam2/usr/bin/bamdepthintersect /bin/mkdir -p '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/bamtofastq.1 programs/bamsort.1 programs/bammarkduplicates.1 programs/bammarkduplicatesopt.1 programs/bammaskflags.1 programs/bamrecompress.1 programs/bamadapterfind.1 programs/bamfilteraux.1 programs/bamauxsort.1 programs/bamadapterclip.1 programs/bamcollate2.1 programs/bam12auxmerge.1 programs/bam12split.1 programs/bam12strip.1 programs/bamreset.1 programs/bamrank.1 programs/bamclipreinsert.1 programs/bamzztoname.1 programs/bamindex.1 programs/bamfilterflags.1 programs/bamfilterrg.1 programs/bamdownsamplerandom.1 programs/bammarkduplicates2.1 programs/bamcat.1 programs/bammerge.1 programs/bamsplit.1 programs/bamsplitdiv.1 programs/bamchecksort.1 programs/fastqtobam.1 programs/bamfixmateinformation.1 programs/normalisefasta.1 programs/bamfilterheader.1 programs/bamfilterheader2.1 programs/bammdnm.1 programs/bamseqchksum.1 programs/bamvalidate.1 programs/bamflagsplit.1 programs/bamintervalcomment.1 programs/bamstreamingmarkduplicates.1 programs/bamsormadup.1 '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/fastaexplode.1 programs/bamrecalculatecigar.1 programs/bamfiltermc.1 programs/bamfillquery.1 programs/bamalignfrac.1 programs/bamauxmerge.1 programs/bamauxmerge2.1 programs/bambisect.1 programs/bamclipXT.1 '/<>/debian/biobambam2/usr/share/man/man1' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/fastqtobampar debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/bamfastcat debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/vcfpatchcontigprepend debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamfastsplit debian/biobambam2/usr/bin/bamheap2 debian/biobambam2/usr/bin/bamfastnumextract debian/biobambam2/usr/bin/bamreheader debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/fastaexplode debian/biobambam2/usr/bin/bamclipXT debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/fastqtobam2 debian/biobambam2/usr/bin/populaterefcache debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/vcfconcat debian/biobambam2/usr/bin/bamtagconversion debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bambisect debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bamfiltereofblocks debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamdepthintersect debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/vcffilterinfo debian/biobambam2/usr/bin/bamfastexploderef debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamexploderef debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamauxmerge2 debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bamzztoname debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/bamnumericalindexstats debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/vcfsort debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamreplacechecksums debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamdepth debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bamauxmerge were not linked against libmaus2_simd_align_128.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/fastqtobampar debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/bamfastcat debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/vcfpatchcontigprepend debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamfastsplit debian/biobambam2/usr/bin/bamheap2 debian/biobambam2/usr/bin/bamfastnumextract debian/biobambam2/usr/bin/bamreheader debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/fastaexplode debian/biobambam2/usr/bin/bamclipXT debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/fastqtobam2 debian/biobambam2/usr/bin/populaterefcache debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/vcfconcat debian/biobambam2/usr/bin/bamtagconversion debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bambisect debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bamfiltereofblocks debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamdepthintersect debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/vcffilterinfo debian/biobambam2/usr/bin/bamfastexploderef debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamexploderef debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamauxmerge2 debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bamzztoname debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/bamnumericalindexstats debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/vcfsort debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamreplacechecksums debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamdepth debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bamauxmerge were not linked against libdl.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/fastqtobampar debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/bamfastcat debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/vcfpatchcontigprepend debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamfastsplit debian/biobambam2/usr/bin/bamheap2 debian/biobambam2/usr/bin/bamfastnumextract debian/biobambam2/usr/bin/bamreheader debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/fastaexplode debian/biobambam2/usr/bin/bamclipXT debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/fastqtobam2 debian/biobambam2/usr/bin/populaterefcache debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/vcfconcat debian/biobambam2/usr/bin/bamtagconversion debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bambisect debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bamfiltereofblocks debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamdepthintersect debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/vcffilterinfo debian/biobambam2/usr/bin/bamfastexploderef debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamexploderef debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamauxmerge2 debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bamzztoname debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/bamnumericalindexstats debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/vcfsort debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamreplacechecksums debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamdepth debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bamauxmerge were not linked against libmaus2_simd_align_256.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/fastqtobampar debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/bamfastcat debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/vcfpatchcontigprepend debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamfastsplit debian/biobambam2/usr/bin/bamheap2 debian/biobambam2/usr/bin/bamfastnumextract debian/biobambam2/usr/bin/bamreheader debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/fastaexplode debian/biobambam2/usr/bin/bamclipXT debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/fastqtobam2 debian/biobambam2/usr/bin/populaterefcache debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/vcfconcat debian/biobambam2/usr/bin/bamtagconversion debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bambisect debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bamfiltereofblocks debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamdepthintersect debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/vcffilterinfo debian/biobambam2/usr/bin/bamfastexploderef debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamexploderef debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamauxmerge2 debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bamzztoname debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/bamnumericalindexstats debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/vcfsort debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamreplacechecksums debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamdepth debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bamauxmerge were not linked against libz.so.1 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'biobambam2' in '../biobambam2_2.0.128-1_arm64.deb'. dpkg-deb: building package 'biobambam2-dbgsym' in '../biobambam2-dbgsym_2.0.128-1_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../biobambam2_2.0.128-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-08-08T01:44:51Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-NddmZT/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-biobambam2-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-NddmZT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NddmZT/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-NddmZT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NddmZT/apt_archive ./ Sources [786 B] Get:5 copy:/<>/resolver-NddmZT/apt_archive ./ Packages [860 B] Fetched 2609 B in 0s (140 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 8535 kB of archives. After this operation, 23.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-NddmZT/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-2 [72.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-2 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1+b1 [33.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-1 [645 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1 [320 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.016-1+b1 [17.0 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.79+repack-2 [34.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.17.0 [1273 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8535 kB in 0s (26.4 MB/s) Selecting previously unselected package readline-common. (Reading database ... 19689 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-2_all.deb ... Unpacking readline-common (8.0-2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-2_amd64.deb ... Unpacking libreadline8:amd64 (8.0-2) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1+b1_amd64.deb ... Unpacking diffstat (1.62-1+b1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.29.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.29.0-1) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.17-3_amd64.deb ... Unpacking gpg (2.2.17-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.36+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../10-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../11-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../12-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../13-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../14-libcgi-pm-perl_4.44-1_all.deb ... Unpacking libcgi-pm-perl (4.44-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../15-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../16-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../17-libclass-method-modifiers-perl_2.12-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.12-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../18-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../19-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../20-libdevel-callchecker-perl_0.008-1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../21-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../22-libdevel-globaldestruction-perl_0.14-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1) ... 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Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up netbase (5.6) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006003-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-2) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.88-1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libreadline8:amd64 (8.0-2) ... Setting up libtype-tiny-perl (1.004004-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ biobambam2_2.0.128-1_arm64.changes: ----------------------------------- Format: 1.8 Date: Wed, 07 Aug 2019 11:28:02 +0200 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.0.128-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: biobambam2 - tools for early stage alignment file processing Changes: biobambam2 (2.0.128-1) unstable; urgency=medium . * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 * Versioned Build-Depends: libmaus2-dev (>= 2.0.650) Checksums-Sha1: 3e7bc6d02b76a70ae3cb31fa4c98559ae8f7ece9 164308212 biobambam2-dbgsym_2.0.128-1_arm64.deb 37fa2b20f5afb839f0344e0c405ba44f7dc6e7d4 4738 biobambam2_2.0.128-1_arm64.buildinfo 47d19f3f1fb6a4d75579667a81c280d3b7e9bca3 5634452 biobambam2_2.0.128-1_arm64.deb Checksums-Sha256: e4ac880702b1d01bddd868d2374920bf3fed6efb7339f89882ca9a79b1b5c283 164308212 biobambam2-dbgsym_2.0.128-1_arm64.deb dc18ad350a9fa7fd348d78cdc45c0967935c929234aa207f56eb82e8df671232 4738 biobambam2_2.0.128-1_arm64.buildinfo d0e96446b0ccb720ca1adf79d77ecd2b96cf39fc6a2ef5dd6ec7db87d5a56a9f 5634452 biobambam2_2.0.128-1_arm64.deb Files: 8a2b4ea64d1470a95123ec6db4f21682 164308212 debug optional biobambam2-dbgsym_2.0.128-1_arm64.deb 123273bbd9bbeec9fc029c0c310c5960 4738 science optional biobambam2_2.0.128-1_arm64.buildinfo e5734e314e1c173b06c4010fb026f330 5634452 science optional biobambam2_2.0.128-1_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: biobambam2 Binary: biobambam2 Architecture: arm64 Version: 2.0.128-1 Checksums-Md5: 8a2b4ea64d1470a95123ec6db4f21682 164308212 biobambam2-dbgsym_2.0.128-1_arm64.deb e5734e314e1c173b06c4010fb026f330 5634452 biobambam2_2.0.128-1_arm64.deb Checksums-Sha1: 3e7bc6d02b76a70ae3cb31fa4c98559ae8f7ece9 164308212 biobambam2-dbgsym_2.0.128-1_arm64.deb 47d19f3f1fb6a4d75579667a81c280d3b7e9bca3 5634452 biobambam2_2.0.128-1_arm64.deb Checksums-Sha256: e4ac880702b1d01bddd868d2374920bf3fed6efb7339f89882ca9a79b1b5c283 164308212 biobambam2-dbgsym_2.0.128-1_arm64.deb d0e96446b0ccb720ca1adf79d77ecd2b96cf39fc6a2ef5dd6ec7db87d5a56a9f 5634452 biobambam2_2.0.128-1_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 08 Aug 2019 01:44:49 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190727-1), binutils-common (= 2.32.51.20190727-1), binutils-x86-64-linux-gnu (= 2.32.51.20190727-1), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9.2), coreutils (= 8.30-3+b1), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-19), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.3), debianutils (= 4.8.6.3), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.4.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.12.20190723-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.6.0+git+20190510-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-19), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-19), gcc-8-base (= 8.3.0-19), gcc-9-base (= 9.1.0-10), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 9.1.0-10), libatomic1 (= 9.1.0-10), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.32.51.20190727-1), libblkid1 (= 2.34-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9.2), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 9.1.0-10), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.4.0-1), libgcc-8-dev (= 8.3.0-19), libgcc1 (= 1:9.1.0-10), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4+b1), libgdbm6 (= 1.18.1-4+b1), libglib2.0-0 (= 2.60.6-1), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.1.0-10), libgpg-error0 (= 1.36-7), libicu63 (= 63.2-2), libisl19 (= 0.20-2), libitm1 (= 9.1.0-10), liblsan0 (= 9.1.0-10), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmaus2-2 (= 2.0.653-1), libmaus2-dev (= 2.0.653-1), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-19), libncurses6 (= 6.1+20190713-2), libncursesw6 (= 6.1+20190713-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libquadmath0 (= 9.1.0-10), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-8-dev (= 8.3.0-19), libstdc++6 (= 9.1.0-10), libsub-override-perl (= 0.09-2), libsystemd0 (= 241-7), libtinfo6 (= 6.1+20190713-2), libtool (= 2.4.6-10), libtsan0 (= 9.1.0-10), libubsan1 (= 9.1.0-10), libuchardet0 (= 0.0.6-3), libudev1 (= 241-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 5.2.6-1), login (= 1:4.7-2), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.6.1-1), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190713-2), ncurses-bin (= 6.1+20190713-2), patch (= 2.7.6-6), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), pkg-config (= 0.29-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.95-4), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1+b1), zlib1g-dev (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1565170082" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ biobambam2-dbgsym_2.0.128-1_arm64.deb ------------------------------------- new Debian package, version 2.0. size 164308212 bytes: control archive=4140 bytes. 3628 bytes, 12 lines control 8568 bytes, 81 lines md5sums Package: biobambam2-dbgsym Source: biobambam2 Version: 2.0.128-1 Auto-Built-Package: debug-symbols Architecture: arm64 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-> biobambam2 biobambam2_2.0.128-1_arm64.deb ------------------------------ new Debian package, version 2.0. size 5634452 bytes: control archive=4172 bytes. 1277 bytes, 25 lines control 8273 bytes, 133 lines md5sums Package: biobambam2 Version: 2.0.128-1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 43835 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libmaus2-2 (>= 2.0.653), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://gitlab.com/german.tischler/biobambam2 Description: tools for early stage alignment file processing This package contains some tools for processing BAM files including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name drwxr-xr-x root/root 0 2019-08-07 09:28 ./ drwxr-xr-x root/root 0 2019-08-07 09:28 ./usr/ drwxr-xr-x root/root 0 2019-08-07 09:28 ./usr/bin/ -rwxr-xr-x root/root 666152 2019-08-07 09:28 ./usr/bin/bam12auxmerge -rwxr-xr-x root/root 563752 2019-08-07 09:28 ./usr/bin/bam12split -rwxr-xr-x root/root 563752 2019-08-07 09:28 ./usr/bin/bam12strip -rwxr-xr-x root/root 592424 2019-08-07 09:28 ./usr/bin/bamadapterclip -rwxr-xr-x root/root 678440 2019-08-07 09:28 ./usr/bin/bamadapterfind -rwxr-xr-x root/root 568840 2019-08-07 09:28 ./usr/bin/bamalignfrac -rwxr-xr-x root/root 604712 2019-08-07 09:28 ./usr/bin/bamauxmerge -rwxr-xr-x root/root 1363040 2019-08-07 09:28 ./usr/bin/bamauxmerge2 -rwxr-xr-x root/root 567848 2019-08-07 09:28 ./usr/bin/bamauxsort -rwxr-xr-x root/root 203024 2019-08-07 09:28 ./usr/bin/bambisect -rwxr-xr-x root/root 555560 2019-08-07 09:28 ./usr/bin/bamcat -rwxr-xr-x root/root 477704 2019-08-07 09:28 ./usr/bin/bamchecksort -rwxr-xr-x root/root 535048 2019-08-07 09:28 ./usr/bin/bamclipXT -rwxr-xr-x root/root 596520 2019-08-07 09:28 ./usr/bin/bamclipreinsert -rwxr-xr-x root/root 735784 2019-08-07 09:28 ./usr/bin/bamcollate2 -rwxr-xr-x root/root 477704 2019-08-07 09:28 ./usr/bin/bamdepth -rwxr-xr-x root/root 514568 2019-08-07 09:28 ./usr/bin/bamdepthintersect -rwxr-xr-x root/root 678440 2019-08-07 09:28 ./usr/bin/bamdownsamplerandom -rwxr-xr-x root/root 530952 2019-08-07 09:28 ./usr/bin/bamexplode -rwxr-xr-x root/root 436504 2019-08-07 09:28 ./usr/bin/bamexploderef -rwxr-xr-x root/root 219408 2019-08-07 09:28 ./usr/bin/bamfastcat -rwxr-xr-x root/root 494088 2019-08-07 09:28 ./usr/bin/bamfastexploderef -rwxr-xr-x root/root 223512 2019-08-07 09:28 ./usr/bin/bamfastnumextract -rwxr-xr-x root/root 198928 2019-08-07 09:28 ./usr/bin/bamfastsplit -rwxr-xr-x root/root 621096 2019-08-07 09:28 ./usr/bin/bamfillquery -rwxr-xr-x root/root 563752 2019-08-07 09:28 ./usr/bin/bamfilteraux -rwxr-xr-x root/root 39104 2019-08-07 09:28 ./usr/bin/bamfiltereofblocks -rwxr-xr-x root/root 612904 2019-08-07 09:28 ./usr/bin/bamfilterflags -rwxr-xr-x root/root 604712 2019-08-07 09:28 ./usr/bin/bamfilterheader -rwxr-xr-x root/root 178448 2019-08-07 09:28 ./usr/bin/bamfilterheader2 -rwxr-xr-x root/root 596520 2019-08-07 09:28 ./usr/bin/bamfilterlength -rwxr-xr-x root/root 600616 2019-08-07 09:28 ./usr/bin/bamfiltermc -rwxr-xr-x root/root 563752 2019-08-07 09:28 ./usr/bin/bamfilternames -rwxr-xr-x root/root 563752 2019-08-07 09:28 ./usr/bin/bamfilterrefid -rwxr-xr-x root/root 567848 2019-08-07 09:28 ./usr/bin/bamfilterrg -rwxr-xr-x root/root 547336 2019-08-07 09:28 ./usr/bin/bamfixmateinformation -rwxr-xr-x root/root 539144 2019-08-07 09:28 ./usr/bin/bamflagsplit -rwxr-xr-x root/root 514568 2019-08-07 09:28 ./usr/bin/bamheap2 -rwxr-xr-x root/root 194832 2019-08-07 09:28 ./usr/bin/bamindex -rwxr-xr-x root/root 753192 2019-08-07 09:28 ./usr/bin/bamintervalcomment -rwxr-xr-x root/root 485896 2019-08-07 09:28 ./usr/bin/bamintervalcommenthist -rwxr-xr-x root/root 489992 2019-08-07 09:28 ./usr/bin/bammapdist -rwxr-xr-x root/root 817672 2019-08-07 09:28 ./usr/bin/bammarkduplicates -rwxr-xr-x root/root 850440 2019-08-07 09:28 ./usr/bin/bammarkduplicates2 -rwxr-xr-x root/root 891400 2019-08-07 09:28 ./usr/bin/bammarkduplicatesopt -rwxr-xr-x root/root 563752 2019-08-07 09:28 ./usr/bin/bammaskflags -rwxr-xr-x root/root 346416 2019-08-07 09:28 ./usr/bin/bammdnm -rwxr-xr-x root/root 604712 2019-08-07 09:28 ./usr/bin/bammerge -rwxr-xr-x root/root 141584 2019-08-07 09:28 ./usr/bin/bamnumericalindex -rwxr-xr-x root/root 178456 2019-08-07 09:28 ./usr/bin/bamnumericalindexstats -rwxr-xr-x root/root 571944 2019-08-07 09:28 ./usr/bin/bamrank -rwxr-xr-x root/root 543240 2019-08-07 09:28 ./usr/bin/bamranksort -rwxr-xr-x root/root 608808 2019-08-07 09:28 ./usr/bin/bamrecalculatecigar -rwxr-xr-x root/root 260408 2019-08-07 09:28 ./usr/bin/bamrecompress -rwxr-xr-x root/root 522760 2019-08-07 09:28 ./usr/bin/bamrefextract -rwxr-xr-x root/root 588328 2019-08-07 09:28 ./usr/bin/bamrefinterval -rwxr-xr-x root/root 190736 2019-08-07 09:28 ./usr/bin/bamreheader -rwxr-xr-x root/root 194832 2019-08-07 09:28 ./usr/bin/bamreplacechecksums -rwxr-xr-x root/root 571944 2019-08-07 09:28 ./usr/bin/bamreset -rwxr-xr-x root/root 473608 2019-08-07 09:28 ./usr/bin/bamscrapcount -rwxr-xr-x root/root 1469776 2019-08-07 09:28 ./usr/bin/bamseqchksum -rwxr-xr-x root/root 2395232 2019-08-07 09:28 ./usr/bin/bamsormadup -rwxr-xr-x root/root 1932656 2019-08-07 09:28 ./usr/bin/bamsort -rwxr-xr-x root/root 526856 2019-08-07 09:28 ./usr/bin/bamsplit -rwxr-xr-x root/root 498184 2019-08-07 09:28 ./usr/bin/bamsplitdiv -rwxr-xr-x root/root 748072 2019-08-07 09:28 ./usr/bin/bamstreamingmarkduplicates -rwxr-xr-x root/root 543240 2019-08-07 09:28 ./usr/bin/bamtagconversion 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09:28 ./usr/share/man/man1/bamsplit.1.gz -rw-r--r-- root/root 982 2019-08-07 09:28 ./usr/share/man/man1/bamsplitdiv.1.gz -rw-r--r-- root/root 2097 2019-08-07 09:28 ./usr/share/man/man1/bamstreamingmarkduplicates.1.gz -rw-r--r-- root/root 3211 2019-08-07 09:28 ./usr/share/man/man1/bamtofastq.1.gz -rw-r--r-- root/root 2033 2019-08-07 09:28 ./usr/share/man/man1/bamvalidate.1.gz -rw-r--r-- root/root 1088 2019-08-07 09:28 ./usr/share/man/man1/bamzztoname.1.gz -rw-r--r-- root/root 969 2019-08-07 09:28 ./usr/share/man/man1/fastaexplode.1.gz -rw-r--r-- root/root 2594 2019-08-07 09:28 ./usr/share/man/man1/fastqtobam.1.gz -rw-r--r-- root/root 1076 2019-08-07 09:28 ./usr/share/man/man1/normalisefasta.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 3797496 Build-Time: 3717 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 28 Job: biobambam2_2.0.128-1 Lintian: pass Machine Architecture: amd64 Package: biobambam2 Package-Time: 3758 Source-Version: 2.0.128-1 Space: 3797496 Status: successful Version: 2.0.128-1 -------------------------------------------------------------------------------- Finished at 2019-08-08T01:44:51Z Build needed 01:02:38, 3797496k disk space