sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | biobambam2 2.0.137+dfsg-1 (mips64el) Sun, 01 Sep 2019 19:40:19 +0000 | +==============================================================================+ Package: biobambam2 Version: 2.0.137+dfsg-1 Source Version: 2.0.137+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-efaf82cc-071b-42ec-8f83-9d86f170449b' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-01-0817.14.pdiff [9725 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-01-1422.25.pdiff [13.2 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-01-1422.25.pdiff [13.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-01-0817.14.pdiff [16.8 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-01-1422.25.pdiff [9949 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-01-1422.25.pdiff [9949 B] Get:8 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [7973 kB] Fetched 8217 kB in 2s (4304 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: findutils 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 685 kB of archives. After this operation, 9216 B disk space will be freed. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 findutils amd64 4.7.0-1 [685 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 685 kB in 0s (36.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13053 files and directories currently installed.) Preparing to unpack .../findutils_4.7.0-1_amd64.deb ... Unpacking findutils (4.7.0-1) over (4.6.0+git+20190510-2) ... Setting up findutils (4.7.0-1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'biobambam2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biobambam2.git Please use: git clone https://salsa.debian.org/med-team/biobambam2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 301 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.137+dfsg-1 (dsc) [2064 B] Get:2 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.137+dfsg-1 (tar) [296 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.137+dfsg-1 (diff) [3084 B] Fetched 301 kB in 0s (6543 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/biobambam2-pUl3yp/biobambam2-2.0.137+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-pUl3yp' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-bN5MnU/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-bN5MnU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bN5MnU/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-bN5MnU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bN5MnU/apt_archive ./ Sources [364 B] Get:5 copy:/<>/resolver-bN5MnU/apt_archive ./ Packages [453 B] Fetched 1774 B in 0s (88.0 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-mips64el-linux-gnuabi64 cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el dpkg-cross file g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-9-cross-base gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 libatomic1-mips64el-cross libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-9-dev-mips64el-cross libgcc1-mips64el-cross libgomp1-mips64el-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-9-dev-mips64el-cross libstdc++6-mips64el-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mips64el-cross sensible-utils ucf Suggested packages: binutils-doc gcc-9-locales cpp-doc binutils-multiarch g++-9-multilib-mips64el-linux-gnuabi64 gcc-9-doc libstdc++6-9-dbg-mips64el-cross gcc-9-multilib-mips64el-linux-gnuabi64 libgcc1-dbg-mips64el-cross libgomp1-dbg-mips64el-cross libitm1-dbg-mips64el-cross libatomic1-dbg-mips64el-cross libasan5-dbg-mips64el-cross liblsan0-dbg-mips64el-cross libtsan0-dbg-mips64el-cross libubsan1-dbg-mips64el-cross libquadmath0-dbg-mips64el-cross manpages-dev autoconf automake libtool flex bison gdb-mips64el-linux-gnuabi64 gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-mips64el-linux-gnuabi64 cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el dpkg-cross file g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-9-cross-base gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 libatomic1-mips64el-cross libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-9-dev-mips64el-cross libgcc1-mips64el-cross libgomp1-mips64el-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-9-dev-mips64el-cross libstdc++6-mips64el-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mips64el-cross sbuild-build-depends-core-dummy:mips64el sensible-utils ucf 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 41.1 MB of archives. After this operation, 153 MB of additional disk space will be used. Get:1 copy:/<>/resolver-bN5MnU/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.32.51.20190821-2 [2286 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64-base amd64 9.2.1-4cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mips64el-linux-gnuabi64 amd64 9.2.1-4cross1 [6460 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:9.2.1-3 [16.6 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-4cross1 [188 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.28-10cross6 [1392 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mips64el-cross all 1:9.2.1-4cross1 [69.3 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 9.2.1-4cross1 [76.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 9.2.1-4cross1 [7472 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mips64el-cross all 9.2.1-4cross1 [247 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64 amd64 9.2.1-4cross1 [6790 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:9.2.1-3 [1472 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 9.2.1-4cross1 [396 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.2.9-2cross6 [1323 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.28-10cross6 [2513 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mips64el-cross all 9.2.1-4cross1 [1720 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mips64el-linux-gnuabi64 amd64 9.2.1-4cross1 [7037 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:9.2.1-3 [1184 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.7 [6612 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.1 MB in 1s (62.6 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 13053 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Selecting previously unselected package libfile-which-perl. Preparing to unpack .../36-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../37-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../38-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../39-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-mips64el. Preparing to unpack .../40-crossbuild-essential-mips64el_12.7_all.deb ... Unpacking crossbuild-essential-mips64el (12.7) ... Selecting previously unselected package sbuild-build-depends-core-dummy:mips64el. Preparing to unpack .../41-sbuild-build-depends-core-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-core-dummy:mips64el (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up gcc-9-mips64el-linux-gnuabi64-base:amd64 (9.2.1-4cross1) ... Setting up libc6-mips64el-cross (2.28-10cross6) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.32.51.20190821-2) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up gcc-9-cross-base (9.2.1-4cross1) ... Setting up sensible-utils (0.0.12) ... Setting up linux-libc-dev-mips64el-cross (5.2.9-2cross6) ... Setting up cpp-9-mips64el-linux-gnuabi64 (9.2.1-4cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:9.2.1-3) ... Setting up libgomp1-mips64el-cross (9.2.1-4cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libatomic1-mips64el-cross (9.2.1-4cross1) ... Setting up libgcc1-mips64el-cross (1:9.2.1-4cross1) ... Setting up libc6-dev-mips64el-cross (2.28-10cross6) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++6-mips64el-cross (9.2.1-4cross1) ... Setting up libgcc-9-dev-mips64el-cross (9.2.1-4cross1) ... Setting up libstdc++-9-dev-mips64el-cross (9.2.1-4cross1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-9-mips64el-linux-gnuabi64 (9.2.1-4cross1) ... Setting up gcc-mips64el-linux-gnuabi64 (4:9.2.1-3) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-9-mips64el-linux-gnuabi64 (9.2.1-4cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:9.2.1-3) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mips64el (12.7) ... Setting up sbuild-build-depends-core-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-bN5MnU/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-bN5MnU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bN5MnU/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-bN5MnU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bN5MnU/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-bN5MnU/apt_archive ./ Packages [573 B] Fetched 2020 B in 0s (104 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:mips64el 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-bN5MnU/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:mips64el. (Reading database ... 16293 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-essential-dummy:mips64el (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:mips64el (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper-compat (= 12), pkg-config, libmaus2-dev (>= 2.0.663) Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper-compat (= 12), pkg-config, libmaus2-dev (>= 2.0.663) dpkg-deb: building package 'sbuild-build-depends-biobambam2-dummy' in '/<>/resolver-bN5MnU/apt_archive/sbuild-build-depends-biobambam2-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-biobambam2-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-bN5MnU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bN5MnU/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-bN5MnU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bN5MnU/apt_archive ./ Sources [666 B] Get:5 copy:/<>/resolver-bN5MnU/apt_archive ./ Packages [745 B] Fetched 2374 B in 0s (108 kB/s) Reading package lists... Reading package lists... Install biobambam2 build dependencies (apt-based resolver) ---------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-9-base:mips64el gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libbsd0 libc6:mips64el libc6-dev:mips64el libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-9-dev:mips64el libgcc1:mips64el libglib2.0-0 libgomp1:mips64el libmaus2-2:mips64el libmaus2-dev:mips64el libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:mips64el libstdc++6:mips64el libsub-override-perl libtool libuchardet0 linux-libc-dev:mips64el m4 man-db pkg-config po-debconf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el manpages-dev:mips64el libstdc++-9-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:mips64el libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-9-base:mips64el gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libbsd0 libc6:mips64el libc6-dev:mips64el libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-9-dev:mips64el libgcc1:mips64el libglib2.0-0 libgomp1:mips64el libmaus2-2:mips64el libmaus2-dev:mips64el libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:mips64el libstdc++6:mips64el libsub-override-perl libtool libuchardet0 linux-libc-dev:mips64el m4 man-db pkg-config po-debconf sbuild-build-depends-biobambam2-dummy:mips64el zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After this operation, 129 MB of additional disk space will be used. Get:1 copy:/<>/resolver-bN5MnU/apt_archive ./ sbuild-build-depends-biobambam2-dummy 0.invalid.0 [908 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-9-base mips64el 9.2.1-6 [192 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.5.0-1 [22.8 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.5.0-1 [14.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-2 [1295 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.5.4 [1035 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc1 mips64el 1:9.2.1-6 [69.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.28-10 [2562 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 9.2.1-6 [7492 B] Get:34 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.2.9-2 [1228 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.28-10 [2513 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 9.2.1-6 [78.4 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-9-dev mips64el 9.2.1-6 [246 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 9.2.1-6 [435 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main mips64el libmaus2-2 mips64el 2.0.663-1 [914 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-1+b1 [88.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-1+b1 [211 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main mips64el libmaus2-dev mips64el 2.0.663-1 [2673 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-9-dev mips64el 9.2.1-6 [1725 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.7 MB in 2s (12.9 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 16293 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... Selecting previously unselected package gcc-9-base:mips64el. Preparing to unpack .../06-gcc-9-base_9.2.1-6_mips64el.deb ... Unpacking gcc-9-base:mips64el (9.2.1-6) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../08-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../10-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../11-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../12-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../13-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../14-libtool_2.4.6-11_all.deb ... Unpacking libtool (2.4.6-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../15-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../16-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.5.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.5.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../19-dh-strip-nondeterminism_1.5.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.5.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../20-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../21-dwz_0.13-1_amd64.deb ... Unpacking dwz (0.13-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../22-libglib2.0-0_2.60.6-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.60.6-2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../23-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../24-libncurses6_6.1+20190803-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190803-1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_12.5.4_all.deb ... Unpacking debhelper (12.5.4) ... Selecting previously unselected package libgcc1:mips64el. Preparing to unpack .../29-libgcc1_1%3a9.2.1-6_mips64el.deb ... Unpacking libgcc1:mips64el (1:9.2.1-6) ... Selecting previously unselected package libc6:mips64el. Preparing to unpack .../30-libc6_2.28-10_mips64el.deb ... Unpacking libc6:mips64el (2.28-10) ... Selecting previously unselected package libatomic1:mips64el. Preparing to unpack .../31-libatomic1_9.2.1-6_mips64el.deb ... Unpacking libatomic1:mips64el (9.2.1-6) ... Selecting previously unselected package linux-libc-dev:mips64el. Preparing to unpack .../32-linux-libc-dev_5.2.9-2_mips64el.deb ... Unpacking linux-libc-dev:mips64el (5.2.9-2) ... Selecting previously unselected package libc6-dev:mips64el. Preparing to unpack .../33-libc6-dev_2.28-10_mips64el.deb ... Unpacking libc6-dev:mips64el (2.28-10) ... Selecting previously unselected package libgomp1:mips64el. Preparing to unpack .../34-libgomp1_9.2.1-6_mips64el.deb ... Unpacking libgomp1:mips64el (9.2.1-6) ... Selecting previously unselected package libgcc-9-dev:mips64el. Preparing to unpack .../35-libgcc-9-dev_9.2.1-6_mips64el.deb ... Unpacking libgcc-9-dev:mips64el (9.2.1-6) ... Selecting previously unselected package libstdc++6:mips64el. Preparing to unpack .../36-libstdc++6_9.2.1-6_mips64el.deb ... Unpacking libstdc++6:mips64el (9.2.1-6) ... Selecting previously unselected package libmaus2-2:mips64el. Preparing to unpack .../37-libmaus2-2_2.0.663-1_mips64el.deb ... Unpacking libmaus2-2:mips64el (2.0.663-1) ... Selecting previously unselected package zlib1g:mips64el. Preparing to unpack .../38-zlib1g_1%3a1.2.11.dfsg-1+b1_mips64el.deb ... Unpacking zlib1g:mips64el (1:1.2.11.dfsg-1+b1) ... Selecting previously unselected package zlib1g-dev:mips64el. Preparing to unpack .../39-zlib1g-dev_1%3a1.2.11.dfsg-1+b1_mips64el.deb ... Unpacking zlib1g-dev:mips64el (1:1.2.11.dfsg-1+b1) ... Selecting previously unselected package libmaus2-dev:mips64el. Preparing to unpack .../40-libmaus2-dev_2.0.663-1_mips64el.deb ... Unpacking libmaus2-dev:mips64el (2.0.663-1) ... Selecting previously unselected package libstdc++-9-dev:mips64el. Preparing to unpack .../41-libstdc++-9-dev_9.2.1-6_mips64el.deb ... Unpacking libstdc++-9-dev:mips64el (9.2.1-6) ... Selecting previously unselected package pkg-config. Preparing to unpack .../42-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package sbuild-build-depends-biobambam2-dummy:mips64el. Preparing to unpack .../43-sbuild-build-depends-biobambam2-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-biobambam2-dummy:mips64el (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.60.6-2) ... No schema files found: doing nothing. Setting up linux-libc-dev:mips64el (5.2.9-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up pkg-config (0.29-6) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up gcc-9-base:mips64el (9.2.1-6) ... Setting up libfile-stripnondeterminism-perl (1.5.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-11) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:mips64el (2.28-10) ... Setting up libc6-dev:mips64el (2.28-10) ... Setting up libgcc1:mips64el (1:9.2.1-6) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-1+b1) ... Setting up libgomp1:mips64el (9.2.1-6) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:mips64el (9.2.1-6) ... Setting up dh-strip-nondeterminism (1.5.0-1) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-1+b1) ... Setting up libstdc++6:mips64el (9.2.1-6) ... Setting up libmaus2-2:mips64el (2.0.663-1) ... Setting up debhelper (12.5.4) ... Setting up libgcc-9-dev:mips64el (9.2.1-6) ... Setting up libmaus2-dev:mips64el (2.0.663-1) ... Setting up libstdc++-9-dev:mips64el (9.2.1-6) ... Setting up sbuild-build-depends-biobambam2-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190821-2 dpkg-dev_1.19.7 g++-8_8.3.0-21 g++-9_9.2.1-6 gcc-8_8.3.0-21 gcc-9_9.2.1-6 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-21 libstdc++-9-dev_9.2.1-6 libstdc++-9-dev-mips64el-cross_9.2.1-4cross1 libstdc++6_9.2.1-6 libstdc++6-mips64el-cross_9.2.1-4cross1 linux-libc-dev_5.2.9-2 Package versions: adduser_3.118 apt_1.8.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190821-2 binutils-common_2.32.51.20190821-2 binutils-mips64el-linux-gnuabi64_2.32.51.20190821-2 binutils-x86-64-linux-gnu_2.32.51.20190821-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.7 bzip2_1.0.6-9.2 coreutils_8.30-3+b1 cpp_4:9.2.1-3 cpp-8_8.3.0-21 cpp-9_9.2.1-6 cpp-9-mips64el-linux-gnuabi64_9.2.1-4cross1 cpp-mips64el-linux-gnuabi64_4:9.2.1-3 cross-config_2.6.15-3 crossbuild-essential-mips64el_12.7 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.5.4 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.5.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.3-4 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 g++_4:9.2.1-3 g++-8_8.3.0-21 g++-9_9.2.1-6 g++-9-mips64el-linux-gnuabi64_9.2.1-4cross1 g++-mips64el-linux-gnuabi64_4:9.2.1-3 gcc_4:9.2.1-3 gcc-8_8.3.0-21 gcc-8-base_8.3.0-21 gcc-9_9.2.1-6 gcc-9-base_9.2.1-6 gcc-9-cross-base_9.2.1-4cross1 gcc-9-mips64el-linux-gnuabi64_9.2.1-4cross1 gcc-9-mips64el-linux-gnuabi64-base_9.2.1-4cross1 gcc-mips64el-linux-gnuabi64_4:9.2.1-3 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.3 libarchive-zip-perl_1.64-1 libasan5_9.2.1-6 libatomic1_9.2.1-6 libatomic1-mips64el-cross_9.2.1-4cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190821-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-dev_2.28-10 libc6-dev-mips64el-cross_2.28-10cross6 libc6-mips64el-cross_2.28-10cross6 libcap-ng0_0.7.9-2+b1 libcc1-0_9.2.1-6 libcom-err2_1.45.3-4 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.3-4 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.5.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-21 libgcc-9-dev_9.2.1-6 libgcc-9-dev-mips64el-cross_9.2.1-4cross1 libgcc1_1:9.2.1-6 libgcc1-mips64el-cross_1:9.2.1-4cross1 libgcrypt20_1.8.5-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-4 libgomp1_9.2.1-6 libgomp1-mips64el-cross_9.2.1-4cross1 libgpg-error0_1.36-7 libhogweed4_3.5.1+really3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.2.1-6 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.2.1-6 liblz4-1_1.8.3-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmaus2-2_2.0.663-1 libmaus2-dev_2.0.663-1 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-21 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.5.1+really3.4.1-1 libp11-kit0_0.23.16.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_9.2.1-6 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.3-4 libstdc++-8-dev_8.3.0-21 libstdc++-9-dev_9.2.1-6 libstdc++-9-dev-mips64el-cross_9.2.1-4cross1 libstdc++6_9.2.1-6 libstdc++6-mips64el-cross_9.2.1-4cross1 libsub-override-perl_0.09-2 libsystemd0_242-5 libtasn1-6_4.14-2 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libtsan0_9.2.1-6 libubsan1_9.2.1-6 libuchardet0_0.0.6-3 libudev1_242-5 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.2.9-2 linux-libc-dev-mips64el-cross_5.2.9-2cross6 login_1:4.7-2 logsave_1.45.3-4 lsb-base_11.1.0 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-biobambam2-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-1 tar_1.30+dfsg-6+b1 tzdata_2019b-2 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Aug 28 16:10:06 2019 UTC gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./biobambam2_2.0.137+dfsg-1.dsc dpkg-source: info: extracting biobambam2 in /<>/biobambam2-2.0.137+dfsg dpkg-source: info: unpacking biobambam2_2.0.137+dfsg.orig.tar.bz2 dpkg-source: info: unpacking biobambam2_2.0.137+dfsg-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-efaf82cc-071b-42ec-8f83-9d86f170449b SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package biobambam2 dpkg-buildpackage: info: source version 2.0.137+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/biobambam2-2.0.137+dfsg' dh_auto_clean rm -f config.log make[1]: Leaving directory '/<>/biobambam2-2.0.137+dfsg' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:3: installing './compile' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.mips64el checking build system type... x86_64-pc-linux-gnu checking host system type... mips64el-unknown-linux-gnuabi64 checking target system type... mips64el-unknown-linux-gnuabi64 checking how to print strings... printf checking for mips64el-linux-gnuabi64-gcc... mips64el-linux-gnuabi64-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... yes checking for mips64el-linux-gnuabi64-gcc option to accept ISO C89... none needed checking whether mips64el-linux-gnuabi64-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mips64el-linux-gnuabi64-gcc... /usr/mips64el-linux-gnuabi64/bin/ld checking if the linker (/usr/mips64el-linux-gnuabi64/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/mips64el-linux-gnuabi64-nm -B checking the name lister (/usr/bin/mips64el-linux-gnuabi64-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to mips64el-unknown-linux-gnuabi64 format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/mips64el-linux-gnuabi64/bin/ld option to reload object files... -r checking for mips64el-linux-gnuabi64-objdump... mips64el-linux-gnuabi64-objdump checking how to recognize dependent libraries... pass_all checking for mips64el-linux-gnuabi64-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for mips64el-linux-gnuabi64-ar... mips64el-linux-gnuabi64-ar checking for archiver @FILE support... @ checking for mips64el-linux-gnuabi64-strip... mips64el-linux-gnuabi64-strip checking for mips64el-linux-gnuabi64-ranlib... mips64el-linux-gnuabi64-ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/mips64el-linux-gnuabi64-nm -B output from mips64el-linux-gnuabi64-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mips64el-linux-gnuabi64-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... mips64el-linux-gnuabi64-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mips64el-linux-gnuabi64-gcc supports -fno-rtti -fno-exceptions... no checking for mips64el-linux-gnuabi64-gcc option to produce PIC... -fPIC -DPIC checking if mips64el-linux-gnuabi64-gcc PIC flag -fPIC -DPIC works... yes checking if mips64el-linux-gnuabi64-gcc static flag -static works... yes checking if mips64el-linux-gnuabi64-gcc supports -c -o file.o... yes checking if mips64el-linux-gnuabi64-gcc supports -c -o file.o... (cached) yes checking whether the mips64el-linux-gnuabi64-gcc linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mips64el-linux-gnuabi64-strip... (cached) mips64el-linux-gnuabi64-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of mips64el-linux-gnuabi64-gcc... none checking whether we are cross compiling... yes checking for mips64el-linux-gnuabi64-gcc... (cached) mips64el-linux-gnuabi64-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... (cached) yes checking for mips64el-linux-gnuabi64-gcc option to accept ISO C89... (cached) none needed checking whether mips64el-linux-gnuabi64-gcc understands -c and -o together... (cached) yes checking for mips64el-linux-gnuabi64-g++... mips64el-linux-gnuabi64-g++ checking whether we are using the GNU C++ compiler... yes checking whether mips64el-linux-gnuabi64-g++ accepts -g... yes checking how to run the C++ preprocessor... mips64el-linux-gnuabi64-g++ -E checking for ld used by mips64el-linux-gnuabi64-g++... /usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip checking if the linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) is GNU ld... yes checking whether the mips64el-linux-gnuabi64-g++ linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking for mips64el-linux-gnuabi64-g++ option to produce PIC... -fPIC -DPIC checking if mips64el-linux-gnuabi64-g++ PIC flag -fPIC -DPIC works... yes checking if mips64el-linux-gnuabi64-g++ static flag -static works... yes checking if mips64el-linux-gnuabi64-g++ supports -c -o file.o... yes checking if mips64el-linux-gnuabi64-g++ supports -c -o file.o... (cached) yes checking whether the mips64el-linux-gnuabi64-g++ linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of mips64el-linux-gnuabi64-g++... none checking whether the C++ compiler supports the -fsanitize=address flag... yes configure: Adding optimisation options to C compiler mips64el-linux-gnuabi64-gcc flags, full list now -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security configure: Adding optimisation options to C++ compiler mips64el-linux-gnuabi64-g++ flags, full list now -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security checking for mips64el-linux-gnuabi64-pkg-config... /usr/bin/mips64el-linux-gnuabi64-pkg-config checking pkg-config is at least version 0.9.0... yes checking for ANSI C header files... (cached) yes checking for libmaus2... yes checking for libmaus2digests... yes checking for libmaus2seqchksumsfactory... yes checking whether we can compile a program using libmaus2... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE... yes checking whether libmaus2 has support for io_lib... no checking whether libmaus2 has support for iRODS... no checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for xerces_c... no configure: Using flags -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security for C compiler mips64el-linux-gnuabi64-gcc configure: Using flags -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security for C++ compiler mips64el-linux-gnuabi64-g++ checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/biobambam2/BamBamConfig.hpp config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/<>/biobambam2-2.0.137+dfsg' make all-recursive make[2]: Entering directory '/<>/biobambam2-2.0.137+dfsg' Making all in src make[3]: Entering directory '/<>/biobambam2-2.0.137+dfsg/src' mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtofastq-bamtofastq.o `test -f 'programs/bamtofastq.cpp' || echo './'`programs/bamtofastq.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtofastq-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicates-bammarkduplicates.o `test -f 'programs/bammarkduplicates.cpp' || echo './'`programs/bammarkduplicates.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsort-bamsort.o `test -f 'programs/bamsort.cpp' || echo './'`programs/bamsort.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammaskflags-bammaskflags.o `test -f 'programs/bammaskflags.cpp' || echo './'`programs/bammaskflags.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammaskflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrecompress-bamrecompress.o `test -f 'programs/bamrecompress.cpp' || echo './'`programs/bamrecompress.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrecompress-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterfind-bamadapterfind.o `test -f 'programs/bamadapterfind.cpp' || echo './'`programs/bamadapterfind.cpp programs/bamadapterfind.cpp: In destructor 'LimitedLockedHeap::ScopeLimitedMutexLock::~ScopeLimitedMutexLock()': programs/bamadapterfind.cpp:189:11: warning: throw will always call terminate() [-Wterminate] 189 | throw lme; | ^~~ programs/bamadapterfind.cpp:189:11: note: in C++11 destructors default to noexcept mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilteraux-bamfilteraux.o `test -f 'programs/bamfilteraux.cpp' || echo './'`programs/bamfilteraux.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilteraux-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxsort-bamauxsort.o `test -f 'programs/bamauxsort.cpp' || echo './'`programs/bamauxsort.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterclip-bamadapterclip.o `test -f 'programs/bamadapterclip.cpp' || echo './'`programs/bamadapterclip.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterclip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterclip-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamadapterclip programs/bamadapterclip-bamadapterclip.o biobambam2/bamadapterclip-Licensing.o biobambam2/bamadapterclip-ClipAdapters.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 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-fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamcollate2-bamcollate2.o `test -f 'programs/bamcollate2.cpp' || echo './'`programs/bamcollate2.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcollate2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcollate2-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo 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-fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12auxmerge-bam12auxmerge.o `test -f 'programs/bam12auxmerge.cpp' || echo './'`programs/bam12auxmerge.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-Split12.o `test -f 'biobambam2/Split12.cpp' || echo './'`biobambam2/Split12.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-Strip12.o `test -f 'biobambam2/Strip12.cpp' || echo './'`biobambam2/Strip12.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-ClipReinsert.o `test -f 'biobambam2/ClipReinsert.cpp' || echo './'`biobambam2/ClipReinsert.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-zzToName.o `test -f 'biobambam2/zzToName.cpp' || echo './'`biobambam2/zzToName.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bam12auxmerge programs/bam12auxmerge-bam12auxmerge.o biobambam2/bam12auxmerge-Licensing.o biobambam2/bam12auxmerge-Split12.o biobambam2/bam12auxmerge-Strip12.o biobambam2/bam12auxmerge-ClipReinsert.o biobambam2/bam12auxmerge-zzToName.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bam12auxmerge programs/bam12auxmerge-bam12auxmerge.o biobambam2/bam12auxmerge-Licensing.o biobambam2/bam12auxmerge-Split12.o biobambam2/bam12auxmerge-Strip12.o biobambam2/bam12auxmerge-ClipReinsert.o biobambam2/bam12auxmerge-zzToName.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12split-bam12split.o `test -f 'programs/bam12split.cpp' || echo './'`programs/bam12split.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12split-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12split-Split12.o `test -f 'biobambam2/Split12.cpp' || echo './'`biobambam2/Split12.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bam12split programs/bam12split-bam12split.o biobambam2/bam12split-Licensing.o biobambam2/bam12split-Split12.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bam12split programs/bam12split-bam12split.o biobambam2/bam12split-Licensing.o biobambam2/bam12split-Split12.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12strip-bam12strip.o `test -f 'programs/bam12strip.cpp' || echo './'`programs/bam12strip.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12strip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12strip-Strip12.o `test -f 'biobambam2/Strip12.cpp' || echo './'`biobambam2/Strip12.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bam12strip programs/bam12strip-bam12strip.o biobambam2/bam12strip-Licensing.o biobambam2/bam12strip-Strip12.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bam12strip programs/bam12strip-bam12strip.o biobambam2/bam12strip-Licensing.o biobambam2/bam12strip-Strip12.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreset-bamreset.o `test -f 'programs/bamreset.cpp' || echo './'`programs/bamreset.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreset-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreset-ResetAlignment.o `test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamreset programs/bamreset-bamreset.o biobambam2/bamreset-Licensing.o biobambam2/bamreset-ResetAlignment.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamreset programs/bamreset-bamreset.o biobambam2/bamreset-Licensing.o biobambam2/bamreset-ResetAlignment.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrank-bamrank.o `test -f 'programs/bamrank.cpp' || echo './'`programs/bamrank.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrank-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrank-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrank programs/bamrank-bamrank.o biobambam2/bamrank-Licensing.o biobambam2/bamrank-AttachRank.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrank programs/bamrank-bamrank.o biobambam2/bamrank-Licensing.o biobambam2/bamrank-AttachRank.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamclipreinsert-bamclipreinsert.o `test -f 'programs/bamclipreinsert.cpp' || echo './'`programs/bamclipreinsert.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamclipreinsert-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamclipreinsert-ClipReinsert.o `test -f 'biobambam2/ClipReinsert.cpp' || echo './'`biobambam2/ClipReinsert.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamclipreinsert programs/bamclipreinsert-bamclipreinsert.o biobambam2/bamclipreinsert-Licensing.o biobambam2/bamclipreinsert-ClipReinsert.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamclipreinsert programs/bamclipreinsert-bamclipreinsert.o biobambam2/bamclipreinsert-Licensing.o biobambam2/bamclipreinsert-ClipReinsert.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamclipXT-bamclipXT.o `test -f 'programs/bamclipXT.cpp' || echo './'`programs/bamclipXT.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamclipXT-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamclipXT programs/bamclipXT-bamclipXT.o biobambam2/bamclipXT-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamclipXT programs/bamclipXT-bamclipXT.o biobambam2/bamclipXT-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamzztoname-bamzztoname.o `test -f 'programs/bamzztoname.cpp' || echo './'`programs/bamzztoname.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamzztoname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamzztoname-zzToName.o `test -f 'biobambam2/zzToName.cpp' || echo './'`biobambam2/zzToName.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamzztoname programs/bamzztoname-bamzztoname.o biobambam2/bamzztoname-Licensing.o biobambam2/bamzztoname-zzToName.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamzztoname programs/bamzztoname-bamzztoname.o biobambam2/bamzztoname-Licensing.o biobambam2/bamzztoname-zzToName.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamindex-bamindex.o `test -f 'programs/bamindex.cpp' || echo './'`programs/bamindex.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamindex-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterflags-bamfilterflags.o `test -f 'programs/bamfilterflags.cpp' || echo './'`programs/bamfilterflags.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterflags programs/bamfilterflags-bamfilterflags.o biobambam2/bamfilterflags-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterflags programs/bamfilterflags-bamfilterflags.o biobambam2/bamfilterflags-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterrg-bamfilterrg.o `test -f 'programs/bamfilterrg.cpp' || echo './'`programs/bamfilterrg.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterrg-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterrg programs/bamfilterrg-bamfilterrg.o biobambam2/bamfilterrg-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterrg programs/bamfilterrg-bamfilterrg.o biobambam2/bamfilterrg-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdownsamplerandom-bamdownsamplerandom.o `test -f 'programs/bamdownsamplerandom.cpp' || echo './'`programs/bamdownsamplerandom.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdownsamplerandom-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamdownsamplerandom programs/bamdownsamplerandom-bamdownsamplerandom.o biobambam2/bamdownsamplerandom-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdownsamplerandom programs/bamdownsamplerandom-bamdownsamplerandom.o biobambam2/bamdownsamplerandom-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicates2-bammarkduplicates2.o `test -f 'programs/bammarkduplicates2.cpp' || echo './'`programs/bammarkduplicates2.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicates2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammarkduplicates2 programs/bammarkduplicates2-bammarkduplicates2.o biobambam2/bammarkduplicates2-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicates2 programs/bammarkduplicates2-bammarkduplicates2.o biobambam2/bammarkduplicates2-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamcat-bamcat.o `test -f 'programs/bamcat.cpp' || echo './'`programs/bamcat.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamcat programs/bamcat-bamcat.o biobambam2/bamcat-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamcat programs/bamcat-bamcat.o biobambam2/bamcat-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammerge-bammerge.o `test -f 'programs/bammerge.cpp' || echo './'`programs/bammerge.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammerge programs/bammerge-bammerge.o biobambam2/bammerge-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammerge programs/bammerge-bammerge.o biobambam2/bammerge-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsplit-bamsplit.o `test -f 'programs/bamsplit.cpp' || echo './'`programs/bamsplit.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsplit-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsplit programs/bamsplit-bamsplit.o biobambam2/bamsplit-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsplit programs/bamsplit-bamsplit.o biobambam2/bamsplit-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastsplit-bamfastsplit.o `test -f 'programs/bamfastsplit.cpp' || echo './'`programs/bamfastsplit.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastsplit-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfastsplit programs/bamfastsplit-bamfastsplit.o biobambam2/bamfastsplit-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfastsplit programs/bamfastsplit-bamfastsplit.o biobambam2/bamfastsplit-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsplitdiv-bamsplitdiv.o `test -f 'programs/bamsplitdiv.cpp' || echo './'`programs/bamsplitdiv.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsplitdiv-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsplitdiv programs/bamsplitdiv-bamsplitdiv.o biobambam2/bamsplitdiv-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsplitdiv programs/bamsplitdiv-bamsplitdiv.o biobambam2/bamsplitdiv-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamchecksort-bamchecksort.o `test -f 'programs/bamchecksort.cpp' || echo './'`programs/bamchecksort.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamchecksort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamchecksort programs/bamchecksort-bamchecksort.o biobambam2/bamchecksort-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamchecksort programs/bamchecksort-bamchecksort.o biobambam2/bamchecksort-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastqtobam-fastqtobam.o `test -f 'programs/fastqtobam.cpp' || echo './'`programs/fastqtobam.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobam-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastqtobam programs/fastqtobam-fastqtobam.o biobambam2/fastqtobam-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastqtobam programs/fastqtobam-fastqtobam.o biobambam2/fastqtobam-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixmateinformation-bamfixmateinformation.o `test -f 'programs/bamfixmateinformation.cpp' || echo './'`programs/bamfixmateinformation.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixmateinformation-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfixmateinformation programs/bamfixmateinformation-bamfixmateinformation.o biobambam2/bamfixmateinformation-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfixmateinformation programs/bamfixmateinformation-bamfixmateinformation.o biobambam2/bamfixmateinformation-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamseqchksum-bamseqchksum.o `test -f 'programs/bamseqchksum.cpp' || echo './'`programs/bamseqchksum.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamseqchksum-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamseqchksum programs/bamseqchksum-bamseqchksum.o biobambam2/bamseqchksum-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamseqchksum programs/bamseqchksum-bamseqchksum.o biobambam2/bamseqchksum-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/normalisefasta-normalisefasta.o `test -f 'programs/normalisefasta.cpp' || echo './'`programs/normalisefasta.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/normalisefasta-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o normalisefasta programs/normalisefasta-normalisefasta.o biobambam2/normalisefasta-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o normalisefasta programs/normalisefasta-normalisefasta.o biobambam2/normalisefasta-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterheader-bamfilterheader.o `test -f 'programs/bamfilterheader.cpp' || echo './'`programs/bamfilterheader.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterheader-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterheader programs/bamfilterheader-bamfilterheader.o biobambam2/bamfilterheader-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterheader programs/bamfilterheader-bamfilterheader.o biobambam2/bamfilterheader-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterheader2-bamfilterheader2.o `test -f 'programs/bamfilterheader2.cpp' || echo './'`programs/bamfilterheader2.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterheader2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterheader2 programs/bamfilterheader2-bamfilterheader2.o biobambam2/bamfilterheader2-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterheader2 programs/bamfilterheader2-bamfilterheader2.o biobambam2/bamfilterheader2-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammdnm-bammdnm.o `test -f 'programs/bammdnm.cpp' || echo './'`programs/bammdnm.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammdnm-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammdnm programs/bammdnm-bammdnm.o biobambam2/bammdnm-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammdnm programs/bammdnm-bammdnm.o biobambam2/bammdnm-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammapdist-bammapdist.o `test -f 'programs/bammapdist.cpp' || echo './'`programs/bammapdist.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammapdist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammapdist programs/bammapdist-bammapdist.o biobambam2/bammapdist-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammapdist programs/bammapdist-bammapdist.o biobambam2/bammapdist-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamvalidate-bamvalidate.o `test -f 'programs/bamvalidate.cpp' || echo './'`programs/bamvalidate.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamvalidate-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamvalidate programs/bamvalidate-bamvalidate.o biobambam2/bamvalidate-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamvalidate programs/bamvalidate-bamvalidate.o biobambam2/bamvalidate-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamflagsplit-bamflagsplit.o `test -f 'programs/bamflagsplit.cpp' || echo './'`programs/bamflagsplit.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamflagsplit-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamflagsplit programs/bamflagsplit-bamflagsplit.o biobambam2/bamflagsplit-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamflagsplit programs/bamflagsplit-bamflagsplit.o biobambam2/bamflagsplit-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamintervalcomment-bamintervalcomment.o `test -f 'programs/bamintervalcomment.cpp' || echo './'`programs/bamintervalcomment.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamintervalcomment-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamintervalcomment programs/bamintervalcomment-bamintervalcomment.o biobambam2/bamintervalcomment-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamintervalcomment programs/bamintervalcomment-bamintervalcomment.o biobambam2/bamintervalcomment-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamintervalcommenthist-bamintervalcommenthist.o `test -f 'programs/bamintervalcommenthist.cpp' || echo './'`programs/bamintervalcommenthist.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamintervalcommenthist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamintervalcommenthist programs/bamintervalcommenthist-bamintervalcommenthist.o biobambam2/bamintervalcommenthist-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamintervalcommenthist programs/bamintervalcommenthist-bamintervalcommenthist.o biobambam2/bamintervalcommenthist-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o `test -f 'programs/bamstreamingmarkduplicates.cpp' || echo './'`programs/bamstreamingmarkduplicates.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamstreamingmarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamstreamingmarkduplicates programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o biobambam2/bamstreamingmarkduplicates-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamstreamingmarkduplicates programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o biobambam2/bamstreamingmarkduplicates-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamheap2-bamheap2.o `test -f 'programs/bamheap2.cpp' || echo './'`programs/bamheap2.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamheap2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamheap2 programs/bamheap2-bamheap2.o biobambam2/bamheap2-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamheap2 programs/bamheap2-bamheap2.o biobambam2/bamheap2-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamalignfrac-bamalignfrac.o `test -f 'programs/bamalignfrac.cpp' || echo './'`programs/bamalignfrac.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamalignfrac-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamalignfrac programs/bamalignfrac-bamalignfrac.o biobambam2/bamalignfrac-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamalignfrac programs/bamalignfrac-bamalignfrac.o biobambam2/bamalignfrac-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilternames-bamfilternames.o `test -f 'programs/bamfilternames.cpp' || echo './'`programs/bamfilternames.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilternames-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilternames programs/bamfilternames-bamfilternames.o biobambam2/bamfilternames-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilternames programs/bamfilternames-bamfilternames.o biobambam2/bamfilternames-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsormadup-bamsormadup.o `test -f 'programs/bamsormadup.cpp' || echo './'`programs/bamsormadup.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsormadup-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsormadup programs/bamsormadup-bamsormadup.o biobambam2/bamsormadup-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsormadup programs/bamsormadup-bamsormadup.o biobambam2/bamsormadup-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamexplode-bamexplode.o `test -f 'programs/bamexplode.cpp' || echo './'`programs/bamexplode.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamexplode-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamexplode programs/bamexplode-bamexplode.o biobambam2/bamexplode-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamexplode programs/bamexplode-bamexplode.o biobambam2/bamexplode-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamexploderef-bamexploderef.o `test -f 'programs/bamexploderef.cpp' || echo './'`programs/bamexploderef.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamexploderef-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamexploderef programs/bamexploderef-bamexploderef.o biobambam2/bamexploderef-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamexploderef programs/bamexploderef-bamexploderef.o biobambam2/bamexploderef-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastexploderef-bamfastexploderef.o `test -f 'programs/bamfastexploderef.cpp' || echo './'`programs/bamfastexploderef.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastexploderef-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfastexploderef programs/bamfastexploderef-bamfastexploderef.o biobambam2/bamfastexploderef-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfastexploderef programs/bamfastexploderef-bamfastexploderef.o biobambam2/bamfastexploderef-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastnumextract-bamfastnumextract.o `test -f 'programs/bamfastnumextract.cpp' || echo './'`programs/bamfastnumextract.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastnumextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfastnumextract programs/bamfastnumextract-bamfastnumextract.o biobambam2/bamfastnumextract-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfastnumextract programs/bamfastnumextract-bamfastnumextract.o biobambam2/bamfastnumextract-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastqtobampar-fastqtobampar.o `test -f 'programs/fastqtobampar.cpp' || echo './'`programs/fastqtobampar.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobampar-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastqtobampar programs/fastqtobampar-fastqtobampar.o biobambam2/fastqtobampar-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastqtobampar programs/fastqtobampar-fastqtobampar.o biobambam2/fastqtobampar-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamranksort-bamranksort.o `test -f 'programs/bamranksort.cpp' || echo './'`programs/bamranksort.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamranksort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamranksort programs/bamranksort-bamranksort.o biobambam2/bamranksort-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamranksort programs/bamranksort-bamranksort.o biobambam2/bamranksort-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtagconversion-bamtagconversion.o `test -f 'programs/bamtagconversion.cpp' || echo './'`programs/bamtagconversion.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtagconversion-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamtagconversion programs/bamtagconversion-bamtagconversion.o biobambam2/bamtagconversion-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtagconversion programs/bamtagconversion-bamtagconversion.o biobambam2/bamtagconversion-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastaexplod-fastaexplod.o `test -f 'programs/fastaexplod.cpp' || echo './'`programs/fastaexplod.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastaexplod-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastaexplod programs/fastaexplod-fastaexplod.o biobambam2/fastaexplod-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastaexplod programs/fastaexplod-fastaexplod.o biobambam2/fastaexplod-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrecalculatecigar-bamrecalculatecigar.o `test -f 'programs/bamrecalculatecigar.cpp' || echo './'`programs/bamrecalculatecigar.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrecalculatecigar-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrecalculatecigar programs/bamrecalculatecigar-bamrecalculatecigar.o biobambam2/bamrecalculatecigar-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 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-fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfiltermc-bamfiltermc.o `test -f 'programs/bamfiltermc.cpp' || echo './'`programs/bamfiltermc.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfiltermc-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfiltermc programs/bamfiltermc-bamfiltermc.o biobambam2/bamfiltermc-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfiltermc programs/bamfiltermc-bamfiltermc.o biobambam2/bamfiltermc-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x 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bamnumericalindex programs/bamnumericalindex-bamnumericalindex.o biobambam2/bamnumericalindex-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamnumericalindex programs/bamnumericalindex-bamnumericalindex.o biobambam2/bamnumericalindex-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamnumericalindexstats-bamnumericalindexstats.o `test -f 'programs/bamnumericalindexstats.cpp' || echo './'`programs/bamnumericalindexstats.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamnumericalindexstats-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamnumericalindexstats programs/bamnumericalindexstats-bamnumericalindexstats.o biobambam2/bamnumericalindexstats-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamnumericalindexstats programs/bamnumericalindexstats-bamnumericalindexstats.o biobambam2/bamnumericalindexstats-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicatesopt-bammarkduplicatesopt.o `test -f 'programs/bammarkduplicatesopt.cpp' || echo './'`programs/bammarkduplicatesopt.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicatesopt-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammarkduplicatesopt programs/bammarkduplicatesopt-bammarkduplicatesopt.o biobambam2/bammarkduplicatesopt-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicatesopt programs/bammarkduplicatesopt-bammarkduplicatesopt.o biobambam2/bammarkduplicatesopt-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterlength-bamfilterlength.o `test -f 'programs/bamfilterlength.cpp' || echo './'`programs/bamfilterlength.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterlength-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterlength programs/bamfilterlength-bamfilterlength.o biobambam2/bamfilterlength-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterlength programs/bamfilterlength-bamfilterlength.o biobambam2/bamfilterlength-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxmerge-bamauxmerge.o `test -f 'programs/bamauxmerge.cpp' || echo './'`programs/bamauxmerge.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxmerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamauxmerge programs/bamauxmerge-bamauxmerge.o biobambam2/bamauxmerge-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxmerge programs/bamauxmerge-bamauxmerge.o biobambam2/bamauxmerge-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrefinterval-bamrefinterval.o `test -f 'programs/bamrefinterval.cpp' || echo './'`programs/bamrefinterval.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrefinterval-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrefinterval programs/bamrefinterval-bamrefinterval.o biobambam2/bamrefinterval-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrefinterval programs/bamrefinterval-bamrefinterval.o biobambam2/bamrefinterval-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamscrapcount-bamscrapcount.o `test -f 'programs/bamscrapcount.cpp' || echo './'`programs/bamscrapcount.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamscrapcount-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamscrapcount programs/bamscrapcount-bamscrapcount.o biobambam2/bamscrapcount-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamscrapcount programs/bamscrapcount-bamscrapcount.o biobambam2/bamscrapcount-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterrefid-bamfilterrefid.o `test -f 'programs/bamfilterrefid.cpp' || echo './'`programs/bamfilterrefid.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterrefid-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterrefid programs/bamfilterrefid-bamfilterrefid.o biobambam2/bamfilterrefid-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterrefid programs/bamfilterrefid-bamfilterrefid.o biobambam2/bamfilterrefid-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfillquery-bamfillquery.o `test -f 'programs/bamfillquery.cpp' || echo './'`programs/bamfillquery.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfillquery-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfillquery-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfillquery programs/bamfillquery-bamfillquery.o biobambam2/bamfillquery-Licensing.o biobambam2/bamfillquery-AttachRank.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfillquery programs/bamfillquery-bamfillquery.o biobambam2/bamfillquery-Licensing.o biobambam2/bamfillquery-AttachRank.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrefextract-bamrefextract.o `test -f 'programs/bamrefextract.cpp' || echo './'`programs/bamrefextract.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrefextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrefextract programs/bamrefextract-bamrefextract.o biobambam2/bamrefextract-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrefextract programs/bamrefextract-bamrefextract.o biobambam2/bamrefextract-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastqtobam2-fastqtobam2.o `test -f 'programs/fastqtobam2.cpp' || echo './'`programs/fastqtobam2.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobam2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobam2-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobam2-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastqtobam2 programs/fastqtobam2-fastqtobam2.o biobambam2/fastqtobam2-Licensing.o biobambam2/fastqtobam2-KmerPoisson.o biobambam2/fastqtobam2-RunEOFFilter.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastqtobam2 programs/fastqtobam2-fastqtobam2.o biobambam2/fastqtobam2-Licensing.o biobambam2/fastqtobam2-KmerPoisson.o biobambam2/fastqtobam2-RunEOFFilter.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxmerge2-bamauxmerge2.o `test -f 'programs/bamauxmerge2.cpp' || echo './'`programs/bamauxmerge2.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxmerge2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxmerge2-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamauxmerge2 programs/bamauxmerge2-bamauxmerge2.o biobambam2/bamauxmerge2-Licensing.o biobambam2/bamauxmerge2-KmerPoisson.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxmerge2 programs/bamauxmerge2-bamauxmerge2.o biobambam2/bamauxmerge2-Licensing.o biobambam2/bamauxmerge2-KmerPoisson.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreheader-bamreheader.o `test -f 'programs/bamreheader.cpp' || echo './'`programs/bamreheader.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamreheader programs/bamreheader-bamreheader.o biobambam2/bamreheader-Licensing.o biobambam2/bamreheader-ReadHeader.o biobambam2/bamreheader-RunEOFFilter.o biobambam2/bamreheader-UpdateNumericalIndex.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamreheader programs/bamreheader-bamreheader.o biobambam2/bamreheader-Licensing.o biobambam2/bamreheader-ReadHeader.o biobambam2/bamreheader-RunEOFFilter.o biobambam2/bamreheader-UpdateNumericalIndex.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreplacechecksums-bamreplacechecksums.o `test -f 'programs/bamreplacechecksums.cpp' || echo './'`programs/bamreplacechecksums.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamreplacechecksums programs/bamreplacechecksums-bamreplacechecksums.o biobambam2/bamreplacechecksums-Licensing.o biobambam2/bamreplacechecksums-ReadHeader.o biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamreplacechecksums programs/bamreplacechecksums-bamreplacechecksums.o biobambam2/bamreplacechecksums-Licensing.o biobambam2/bamreplacechecksums-ReadHeader.o biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastcat-bamfastcat.o `test -f 'programs/bamfastcat.cpp' || echo './'`programs/bamfastcat.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfastcat programs/bamfastcat-bamfastcat.o biobambam2/bamfastcat-Licensing.o biobambam2/bamfastcat-ReadHeader.o biobambam2/bamfastcat-RunEOFFilter.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfastcat programs/bamfastcat-bamfastcat.o biobambam2/bamfastcat-Licensing.o biobambam2/bamfastcat-ReadHeader.o biobambam2/bamfastcat-RunEOFFilter.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcffilterinfo-vcffilterinfo.o `test -f 'programs/vcffilterinfo.cpp' || echo './'`programs/vcffilterinfo.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcffilterinfo-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcffilterinfo programs/vcffilterinfo-vcffilterinfo.o biobambam2/vcffilterinfo-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcffilterinfo programs/vcffilterinfo-vcffilterinfo.o biobambam2/vcffilterinfo-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfpatchcontigprepend-vcfpatchcontigprepend.o `test -f 'programs/vcfpatchcontigprepend.cpp' || echo './'`programs/vcfpatchcontigprepend.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfpatchcontigprepend-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcfpatchcontigprepend programs/vcfpatchcontigprepend-vcfpatchcontigprepend.o biobambam2/vcfpatchcontigprepend-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcfpatchcontigprepend programs/vcfpatchcontigprepend-vcfpatchcontigprepend.o biobambam2/vcfpatchcontigprepend-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/populaterefcache-populaterefcache.o `test -f 'programs/populaterefcache.cpp' || echo './'`programs/populaterefcache.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/populaterefcache-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o populaterefcache programs/populaterefcache-populaterefcache.o biobambam2/populaterefcache-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o populaterefcache programs/populaterefcache-populaterefcache.o biobambam2/populaterefcache-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bambisect-bambisect.o `test -f 'programs/bambisect.cpp' || echo './'`programs/bambisect.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bambisect-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bambisect programs/bambisect-bambisect.o biobambam2/bambisect-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bambisect programs/bambisect-bambisect.o biobambam2/bambisect-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfconcat-vcfconcat.o `test -f 'programs/vcfconcat.cpp' || echo './'`programs/vcfconcat.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfconcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcfconcat programs/vcfconcat-vcfconcat.o biobambam2/vcfconcat-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcfconcat programs/vcfconcat-vcfconcat.o biobambam2/vcfconcat-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfsort-vcfsort.o `test -f 'programs/vcfsort.cpp' || echo './'`programs/vcfsort.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcfsort programs/vcfsort-vcfsort.o biobambam2/vcfsort-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcfsort programs/vcfsort-vcfsort.o biobambam2/vcfsort-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfiltereofblocks-bamfiltereofblocks.o `test -f 'programs/bamfiltereofblocks.cpp' || echo './'`programs/bamfiltereofblocks.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfiltereofblocks-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfiltereofblocks-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfiltereofblocks programs/bamfiltereofblocks-bamfiltereofblocks.o biobambam2/bamfiltereofblocks-Licensing.o biobambam2/bamfiltereofblocks-RunEOFFilter.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfiltereofblocks programs/bamfiltereofblocks-bamfiltereofblocks.o biobambam2/bamfiltereofblocks-Licensing.o biobambam2/bamfiltereofblocks-RunEOFFilter.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdepth-bamdepth.o `test -f 'programs/bamdepth.cpp' || echo './'`programs/bamdepth.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepth-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepth-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamdepth programs/bamdepth-bamdepth.o biobambam2/bamdepth-Licensing.o biobambam2/bamdepth-DepthInterval.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdepth programs/bamdepth-bamdepth.o biobambam2/bamdepth-Licensing.o biobambam2/bamdepth-DepthInterval.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdepthintersect-bamdepthintersect.o `test -f 'programs/bamdepthintersect.cpp' || echo './'`programs/bamdepthintersect.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepthintersect-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepthintersect-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamdepthintersect programs/bamdepthintersect-bamdepthintersect.o biobambam2/bamdepthintersect-Licensing.o biobambam2/bamdepthintersect-DepthInterval.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdepthintersect programs/bamdepthintersect-bamdepthintersect.o biobambam2/bamdepthintersect-Licensing.o biobambam2/bamdepthintersect-DepthInterval.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterk-bamfilterk.o `test -f 'programs/bamfilterk.cpp' || echo './'`programs/bamfilterk.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterk-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterk-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterk-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterk programs/bamfilterk-bamfilterk.o biobambam2/bamfilterk-Licensing.o biobambam2/bamfilterk-DepthInterval.o biobambam2/bamfilterk-RunEOFFilter.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterk programs/bamfilterk-bamfilterk.o biobambam2/bamfilterk-Licensing.o biobambam2/bamfilterk-DepthInterval.o biobambam2/bamfilterk-RunEOFFilter.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamconsensus-bamconsensus.o `test -f 'programs/bamconsensus.cpp' || echo './'`programs/bamconsensus.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamconsensus-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamconsensus programs/bamconsensus-bamconsensus.o biobambam2/bamconsensus-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamconsensus programs/bamconsensus-bamconsensus.o biobambam2/bamconsensus-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixpairinfo-bamfixpairinfo.o `test -f 'programs/bamfixpairinfo.cpp' || echo './'`programs/bamfixpairinfo.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixpairinfo-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixpairinfo-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixpairinfo-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfixpairinfo programs/bamfixpairinfo-bamfixpairinfo.o biobambam2/bamfixpairinfo-Licensing.o biobambam2/bamfixpairinfo-DepthInterval.o biobambam2/bamfixpairinfo-RunEOFFilter.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfixpairinfo programs/bamfixpairinfo-bamfixpairinfo.o biobambam2/bamfixpairinfo-Licensing.o biobambam2/bamfixpairinfo-DepthInterval.o biobambam2/bamfixpairinfo-RunEOFFilter.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/filtergtf-filtergtf.o `test -f 'programs/filtergtf.cpp' || echo './'`programs/filtergtf.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/filtergtf-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o filtergtf programs/filtergtf-filtergtf.o biobambam2/filtergtf-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o filtergtf programs/filtergtf-filtergtf.o biobambam2/filtergtf-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfeaturecount-bamfeaturecount.o `test -f 'programs/bamfeaturecount.cpp' || echo './'`programs/bamfeaturecount.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfeaturecount-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfeaturecount programs/bamfeaturecount-bamfeaturecount.o biobambam2/bamfeaturecount-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfeaturecount programs/bamfeaturecount-bamfeaturecount.o biobambam2/bamfeaturecount-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilter-bamfilter.o `test -f 'programs/bamfilter.cpp' || echo './'`programs/bamfilter.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilter-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilter programs/bamfilter-bamfilter.o biobambam2/bamfilter-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilter programs/bamfilter-bamfilter.o biobambam2/bamfilter-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixmatecoordinates-bamfixmatecoordinates.o `test -f 'programs/bamfixmatecoordinates.cpp' || echo './'`programs/bamfixmatecoordinates.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixmatecoordinates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfixmatecoordinates programs/bamfixmatecoordinates-bamfixmatecoordinates.o biobambam2/bamfixmatecoordinates-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfixmatecoordinates programs/bamfixmatecoordinates-bamfixmatecoordinates.o biobambam2/bamfixmatecoordinates-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o `test -f 'programs/bamfixmatecoordinatesnamesorted.cpp' || echo './'`programs/bamfixmatecoordinatesnamesorted.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfixmatecoordinatesnamesorted programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfixmatecoordinatesnamesorted programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtoname-bamtoname.o `test -f 'programs/bamtoname.cpp' || echo './'`programs/bamtoname.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtoname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamtoname programs/bamtoname-bamtoname.o biobambam2/bamtoname-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtoname programs/bamtoname-bamtoname.o biobambam2/bamtoname-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdisthist-bamdisthist.o `test -f 'programs/bamdisthist.cpp' || echo './'`programs/bamdisthist.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdisthist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamdisthist programs/bamdisthist-bamdisthist.o biobambam2/bamdisthist-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdisthist programs/bamdisthist-bamdisthist.o biobambam2/bamdisthist-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastabgzfextract-fastabgzfextract.o `test -f 'programs/fastabgzfextract.cpp' || echo './'`programs/fastabgzfextract.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastabgzfextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastabgzfextract programs/fastabgzfextract-fastabgzfextract.o biobambam2/fastabgzfextract-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastabgzfextract programs/fastabgzfextract-fastabgzfextract.o biobambam2/fastabgzfextract-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamheap-bamheap.o `test -f 'programs/bamheap.cpp' || echo './'`programs/bamheap.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamheap-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamheap programs/bamheap-bamheap.o biobambam2/bamheap-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamheap programs/bamheap-bamheap.o biobambam2/bamheap-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfrontback-bamfrontback.o `test -f 'programs/bamfrontback.cpp' || echo './'`programs/bamfrontback.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfrontback-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfrontback-ResetAlignment.o `test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfrontback programs/bamfrontback-bamfrontback.o biobambam2/bamfrontback-Licensing.o biobambam2/bamfrontback-ResetAlignment.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfrontback programs/bamfrontback-bamfrontback.o biobambam2/bamfrontback-Licensing.o biobambam2/bamfrontback-ResetAlignment.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrandomtag-bamrandomtag.o `test -f 'programs/bamrandomtag.cpp' || echo './'`programs/bamrandomtag.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrandomtag-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrandomtag programs/bamrandomtag-bamrandomtag.o biobambam2/bamrandomtag-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/biobambam2-2.0.137+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrandomtag programs/bamrandomtag-bamrandomtag.o biobambam2/bamrandomtag-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp make[3]: Leaving directory '/<>/biobambam2-2.0.137+dfsg/src' make[3]: Entering directory '/<>/biobambam2-2.0.137+dfsg' make[3]: Leaving directory '/<>/biobambam2-2.0.137+dfsg' make[2]: Leaving directory '/<>/biobambam2-2.0.137+dfsg' make[1]: Leaving directory '/<>/biobambam2-2.0.137+dfsg' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/biobambam2-2.0.137\+dfsg/debian/biobambam2 AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/biobambam2-2.0.137+dfsg' Making install in src make[2]: Entering directory '/<>/biobambam2-2.0.137+dfsg/src' make[3]: Entering directory '/<>/biobambam2-2.0.137+dfsg/src' /bin/mkdir -p '/<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c bamtofastq bammarkduplicates bamsort bammaskflags bamrecompress bamadapterfind bamfilteraux bamauxsort bamadapterclip bamcollate2 bam12auxmerge bam12split bam12strip bamreset bamrank bamclipreinsert bamclipXT bamzztoname bamindex bamfilterflags bamfilterrg bamdownsamplerandom bammarkduplicates2 bamcat bammerge bamsplit bamfastsplit bamsplitdiv bamchecksort fastqtobam bamfixmateinformation bamseqchksum normalisefasta bamfilterheader bamfilterheader2 bammdnm bammapdist bamvalidate bamflagsplit bamintervalcomment bamintervalcommenthist bamstreamingmarkduplicates bamheap2 bamalignfrac bamfilternames bamsormadup bamexplode bamexploderef bamfastexploderef bamfastnumextract fastqtobampar bamranksort bamtagconversion fastaexplod bamrecalculatecigar bamfiltermc bamnumericalindex bamnumericalindexstats bammarkduplicatesopt bamfilterlength bamauxmerge bamrefinterval bamscrapcount bamfilterrefid bamfillquery bamrefextract fastqtobam2 bamauxmerge2 bamreheader bamreplacechecksums bamfastcat vcffilterinfo vcfpatchcontigprepend populaterefcache bambisect vcfconcat vcfsort bamfiltereofblocks bamdepth bamdepthintersect bamfilterk bamconsensus bamfixpairinfo filtergtf bamfeaturecount '/<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin' libtool: install: /usr/bin/install -c bamtofastq /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamtofastq libtool: install: /usr/bin/install -c bammarkduplicates /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bammarkduplicates libtool: install: /usr/bin/install -c bamsort /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamsort libtool: install: /usr/bin/install -c bammaskflags /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bammaskflags libtool: install: /usr/bin/install -c bamrecompress /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamrecompress libtool: install: /usr/bin/install -c bamadapterfind /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamadapterfind libtool: install: /usr/bin/install -c bamfilteraux /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfilteraux libtool: install: /usr/bin/install -c bamauxsort /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamauxsort libtool: install: /usr/bin/install -c bamadapterclip /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamadapterclip libtool: install: /usr/bin/install -c bamcollate2 /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamcollate2 libtool: install: /usr/bin/install -c bam12auxmerge /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bam12auxmerge libtool: install: /usr/bin/install -c bam12split /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bam12split libtool: install: /usr/bin/install -c bam12strip /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bam12strip libtool: install: /usr/bin/install -c bamreset /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamreset libtool: install: /usr/bin/install -c bamrank /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamrank libtool: install: /usr/bin/install -c bamclipreinsert /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamclipreinsert libtool: install: /usr/bin/install -c bamclipXT /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamclipXT libtool: install: /usr/bin/install -c bamzztoname /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamzztoname libtool: install: /usr/bin/install -c bamindex /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamindex libtool: install: /usr/bin/install -c bamfilterflags /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfilterflags libtool: install: /usr/bin/install -c bamfilterrg /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfilterrg libtool: install: /usr/bin/install -c bamdownsamplerandom /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamdownsamplerandom libtool: install: /usr/bin/install -c bammarkduplicates2 /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bammarkduplicates2 libtool: install: /usr/bin/install -c bamcat /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamcat libtool: install: /usr/bin/install -c bammerge /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bammerge libtool: install: /usr/bin/install -c bamsplit /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamsplit libtool: install: /usr/bin/install -c bamfastsplit /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfastsplit libtool: install: /usr/bin/install -c bamsplitdiv /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamsplitdiv libtool: install: /usr/bin/install -c bamchecksort /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamchecksort libtool: install: /usr/bin/install -c fastqtobam /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/fastqtobam libtool: install: /usr/bin/install -c bamfixmateinformation /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfixmateinformation libtool: install: /usr/bin/install -c bamseqchksum /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamseqchksum libtool: install: /usr/bin/install -c normalisefasta /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/normalisefasta libtool: install: /usr/bin/install -c bamfilterheader /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfilterheader libtool: install: /usr/bin/install -c bamfilterheader2 /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfilterheader2 libtool: install: /usr/bin/install -c bammdnm /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bammdnm libtool: install: /usr/bin/install -c bammapdist /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bammapdist libtool: install: /usr/bin/install -c bamvalidate /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamvalidate libtool: install: /usr/bin/install -c bamflagsplit /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamflagsplit libtool: install: /usr/bin/install -c bamintervalcomment /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamintervalcomment libtool: install: /usr/bin/install -c bamintervalcommenthist /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamintervalcommenthist libtool: install: /usr/bin/install -c bamstreamingmarkduplicates /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamstreamingmarkduplicates libtool: install: /usr/bin/install -c bamheap2 /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamheap2 libtool: install: /usr/bin/install -c bamalignfrac /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamalignfrac libtool: install: /usr/bin/install -c bamfilternames /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfilternames libtool: install: /usr/bin/install -c bamsormadup /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamsormadup libtool: install: /usr/bin/install -c bamexplode /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamexplode libtool: install: /usr/bin/install -c bamexploderef /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamexploderef libtool: install: /usr/bin/install -c bamfastexploderef /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfastexploderef libtool: install: /usr/bin/install -c bamfastnumextract /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfastnumextract libtool: install: /usr/bin/install -c fastqtobampar /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/fastqtobampar libtool: install: /usr/bin/install -c bamranksort /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamranksort libtool: install: /usr/bin/install -c bamtagconversion /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamtagconversion libtool: install: /usr/bin/install -c fastaexplod /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/fastaexplod libtool: install: /usr/bin/install -c bamrecalculatecigar /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamrecalculatecigar libtool: install: /usr/bin/install -c bamfiltermc /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfiltermc libtool: install: /usr/bin/install -c bamnumericalindex /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamnumericalindex libtool: install: /usr/bin/install -c bamnumericalindexstats /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamnumericalindexstats libtool: install: /usr/bin/install -c bammarkduplicatesopt /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bammarkduplicatesopt libtool: install: /usr/bin/install -c bamfilterlength /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfilterlength libtool: install: /usr/bin/install -c bamauxmerge /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamauxmerge libtool: install: /usr/bin/install -c bamrefinterval /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamrefinterval libtool: install: /usr/bin/install -c bamscrapcount /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamscrapcount libtool: install: /usr/bin/install -c bamfilterrefid /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfilterrefid libtool: install: /usr/bin/install -c bamfillquery /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfillquery libtool: install: /usr/bin/install -c bamrefextract /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamrefextract libtool: install: /usr/bin/install -c fastqtobam2 /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/fastqtobam2 libtool: install: /usr/bin/install -c bamauxmerge2 /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamauxmerge2 libtool: install: /usr/bin/install -c bamreheader /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamreheader libtool: install: /usr/bin/install -c bamreplacechecksums /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamreplacechecksums libtool: install: /usr/bin/install -c bamfastcat /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfastcat libtool: install: /usr/bin/install -c vcffilterinfo /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/vcffilterinfo libtool: install: /usr/bin/install -c vcfpatchcontigprepend /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/vcfpatchcontigprepend libtool: install: /usr/bin/install -c populaterefcache /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/populaterefcache libtool: install: /usr/bin/install -c bambisect /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bambisect libtool: install: /usr/bin/install -c vcfconcat /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/vcfconcat libtool: install: /usr/bin/install -c vcfsort /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/vcfsort libtool: install: /usr/bin/install -c bamfiltereofblocks /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfiltereofblocks libtool: install: /usr/bin/install -c bamdepth /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamdepth libtool: install: /usr/bin/install -c bamdepthintersect /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamdepthintersect libtool: install: /usr/bin/install -c bamfilterk /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfilterk libtool: install: /usr/bin/install -c bamconsensus /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamconsensus libtool: install: /usr/bin/install -c bamfixpairinfo /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfixpairinfo libtool: install: /usr/bin/install -c filtergtf /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/filtergtf libtool: install: /usr/bin/install -c bamfeaturecount /<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/bin/bamfeaturecount /bin/mkdir -p '/<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/bamtofastq.1 programs/bamsort.1 programs/bammarkduplicates.1 programs/bammarkduplicatesopt.1 programs/bammaskflags.1 programs/bamrecompress.1 programs/bamadapterfind.1 programs/bamfilteraux.1 programs/bamauxsort.1 programs/bamadapterclip.1 programs/bamcollate2.1 programs/bam12auxmerge.1 programs/bam12split.1 programs/bam12strip.1 programs/bamreset.1 programs/bamrank.1 programs/bamclipreinsert.1 programs/bamzztoname.1 programs/bamindex.1 programs/bamfilterflags.1 programs/bamfilterrg.1 programs/bamdownsamplerandom.1 programs/bammarkduplicates2.1 programs/bamcat.1 programs/bammerge.1 programs/bamsplit.1 programs/bamsplitdiv.1 programs/bamchecksort.1 programs/fastqtobam.1 programs/bamfixmateinformation.1 programs/normalisefasta.1 programs/bamfilterheader.1 programs/bamfilterheader2.1 programs/bammdnm.1 programs/bamseqchksum.1 programs/bamvalidate.1 programs/bamflagsplit.1 programs/bamintervalcomment.1 programs/bamstreamingmarkduplicates.1 programs/bamsormadup.1 '/<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/fastaexplod.1 programs/bamrecalculatecigar.1 programs/bamfiltermc.1 programs/bamfillquery.1 programs/bamalignfrac.1 programs/bamauxmerge.1 programs/bamauxmerge2.1 programs/bambisect.1 programs/bamclipXT.1 programs/bamconsensus.1 programs/filtergtf.1 programs/bamfeaturecount.1 '/<>/biobambam2-2.0.137+dfsg/debian/biobambam2/usr/share/man/man1' make[3]: Leaving directory '/<>/biobambam2-2.0.137+dfsg/src' make[2]: Leaving directory '/<>/biobambam2-2.0.137+dfsg/src' make[2]: Entering directory '/<>/biobambam2-2.0.137+dfsg' make[3]: Entering directory '/<>/biobambam2-2.0.137+dfsg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/biobambam2-2.0.137+dfsg' make[2]: Leaving directory '/<>/biobambam2-2.0.137+dfsg' make[1]: Leaving directory '/<>/biobambam2-2.0.137+dfsg' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'biobambam2' in '../biobambam2_2.0.137+dfsg-1_mips64el.deb'. dpkg-deb: building package 'biobambam2-dbgsym' in '../biobambam2-dbgsym_2.0.137+dfsg-1_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../biobambam2_2.0.137+dfsg-1_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-09-01T21:03:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-bN5MnU/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-biobambam2-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-bN5MnU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bN5MnU/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-bN5MnU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bN5MnU/apt_archive ./ Sources [786 B] Get:5 copy:/<>/resolver-bN5MnU/apt_archive ./ Packages [862 B] Fetched 2611 B in 0s (135 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 8520 kB of archives. After this operation, 23.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-bN5MnU/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1+b1 [33.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-2 [646 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1 [320 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.016-1+b1 [17.0 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.80+repack-1 [34.5 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.19.0 [1256 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8520 kB in 0s (28.7 MB/s) Selecting previously unselected package readline-common. (Reading database ... 20702 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1+b1_amd64.deb ... Unpacking diffstat (1.62-1+b1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.29.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.29.0-2) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.17-3_amd64.deb ... Unpacking gpg (2.2.17-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.36+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../10-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../11-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. 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Setting up diffstat (1.62-1+b1) ... Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up netbase (5.6) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006003-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-3) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.88-1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up libtype-tiny-perl (1.004004-1) ... Setting up libnet-dns-perl (1.20-1) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up libio-async-loop-epoll-perl (0.20-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.17-3) ... Setting up libio-socket-ssl-perl (2.066-1) ... Setting up gpg (2.2.17-3) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up libcgi-pm-perl (4.44-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up lintian (2.19.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-10) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ biobambam2_2.0.137+dfsg-1_mips64el.changes: ------------------------------------------- Format: 1.8 Date: Wed, 28 Aug 2019 14:49:00 +0200 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 2.0.137+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steffen Moeller Description: biobambam2 - tools for early stage alignment file processing Changes: biobambam2 (2.0.137+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Removed autogenerated files from source tree Checksums-Sha1: 4c4077291ddd5a251ae8c3aac8673b7adb6cf056 209573924 biobambam2-dbgsym_2.0.137+dfsg-1_mips64el.deb a2875e156bfd216c59f52280751251d38684b5c6 4870 biobambam2_2.0.137+dfsg-1_mips64el.buildinfo 612fbfe02c1bdc08054efc2a7819c1ccb9b243fe 6352156 biobambam2_2.0.137+dfsg-1_mips64el.deb Checksums-Sha256: 7ebc093b4b7d662ca0cd5d89cacb312a244f189b0b0ee7020ce5e456a85b72a2 209573924 biobambam2-dbgsym_2.0.137+dfsg-1_mips64el.deb cdbfada25638f533643e51ff01512f9c2a3605b08ea2cb86bbbd5020a1540c7a 4870 biobambam2_2.0.137+dfsg-1_mips64el.buildinfo dae3455333ae6c1b7aadeef3f15861f989f0b0ac88c5676169defe7eed6c8faa 6352156 biobambam2_2.0.137+dfsg-1_mips64el.deb Files: 6cabf21e9e536938d7f118ee8e06b0fc 209573924 debug optional biobambam2-dbgsym_2.0.137+dfsg-1_mips64el.deb 1566d8ec8565f44ed5befcc701428ca0 4870 science optional biobambam2_2.0.137+dfsg-1_mips64el.buildinfo bfdd7adf094914ccbb065ef41c247fe6 6352156 science optional biobambam2_2.0.137+dfsg-1_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: biobambam2 Binary: biobambam2 Architecture: mips64el Version: 2.0.137+dfsg-1 Checksums-Md5: 6cabf21e9e536938d7f118ee8e06b0fc 209573924 biobambam2-dbgsym_2.0.137+dfsg-1_mips64el.deb bfdd7adf094914ccbb065ef41c247fe6 6352156 biobambam2_2.0.137+dfsg-1_mips64el.deb Checksums-Sha1: 4c4077291ddd5a251ae8c3aac8673b7adb6cf056 209573924 biobambam2-dbgsym_2.0.137+dfsg-1_mips64el.deb 612fbfe02c1bdc08054efc2a7819c1ccb9b243fe 6352156 biobambam2_2.0.137+dfsg-1_mips64el.deb Checksums-Sha256: 7ebc093b4b7d662ca0cd5d89cacb312a244f189b0b0ee7020ce5e456a85b72a2 209573924 biobambam2-dbgsym_2.0.137+dfsg-1_mips64el.deb dae3455333ae6c1b7aadeef3f15861f989f0b0ac88c5676169defe7eed6c8faa 6352156 biobambam2_2.0.137+dfsg-1_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 01 Sep 2019 21:03:02 +0000 Build-Path: /<>/biobambam2-2.0.137+dfsg Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190821-2), binutils-common (= 2.32.51.20190821-2), binutils-x86-64-linux-gnu (= 2.32.51.20190821-2), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.7), bzip2 (= 1.0.6-9.2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3), cpp-8 (= 8.3.0-21), cpp-9 (= 9.2.1-6), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.5.4), debianutils (= 4.8.6.3), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.5.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3), g++-9 (= 9.2.1-6), gcc (= 4:9.2.1-3), gcc-8 (= 8.3.0-21), gcc-8-base (= 8.3.0-21), gcc-9 (= 9.2.1-6), gcc-9-base (= 9.2.1-6), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3+b1), hostname (= 3.22+b1), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 9.2.1-6), libatomic1 (= 9.2.1-6), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.32.51.20190821-2), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.6-9.2), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2+b1), libcc1-0 (= 9.2.1-6), libcroco3 (= 0.6.13-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.5.0-1), libgcc-8-dev (= 8.3.0-21), libgcc-9-dev (= 9.2.1-6), libgcc1 (= 1:9.2.1-6), libgcrypt20 (= 1.8.5-2), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.60.6-2), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.2.1-6), libgpg-error0 (= 1.36-7), libicu63 (= 63.2-2), libisl19 (= 0.20-2), libitm1 (= 9.2.1-6), liblsan0 (= 9.2.1-6), liblz4-1 (= 1.8.3-1+b1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmaus2-2 (= 2.0.663-1), libmaus2-dev (= 2.0.663-1), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-21), libncurses6 (= 6.1+20190803-1), libncursesw6 (= 6.1+20190803-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libquadmath0 (= 9.2.1-6), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.2.1-6), libstdc++6 (= 9.2.1-6), libsub-override-perl (= 0.09-2), libsystemd0 (= 242-5), libtinfo6 (= 6.1+20190803-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-6), libubsan1 (= 9.2.1-6), libuchardet0 (= 0.0.6-3), libudev1 (= 242-5), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 5.2.9-2), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.7-3), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190803-1), ncurses-bin (= 6.1+20190803-1), patch (= 2.7.6-6), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), pkg-config (= 0.29-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.96~beta-1), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1), zlib1g-dev (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1566996540" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ biobambam2-dbgsym_2.0.137+dfsg-1_mips64el.deb --------------------------------------------- new Debian package, version 2.0. size 209573924 bytes: control archive=4364 bytes. 3846 bytes, 12 lines control 9104 bytes, 86 lines md5sums Package: biobambam2-dbgsym Source: biobambam2 Version: 2.0.137+dfsg-1 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 220294 Depends: biobambam2 (= 2.0.137+dfsg-1) Section: debug Priority: optional Description: debug symbols for biobambam2 Build-Ids: 014f41da2bbe963941106c9b123ec068bb2816f2 0538d7b15b3e3942d28d3e0fdb38bfefd048c730 05a15411cfbb92f2225d5f07995f4c6d8274393c 0c68730a804c3037480162b7c19178d0f75b13bc 0cc183a7c6f91ef96d03cb4c683a797acd243aff 0f5b329db2768b79fe075286c9337fb671d40efc 1063e8408a2234346927f48a57f8b59b9fdd00ec 121efbaabf16c05d8529a836cc25c52ac684defb 15875acb2e7b131d042050a482fbacf6c16304f9 17531cd5ccd50a82b6ea79dc0a6f2aedc1813eca 1d4af72d3196899ae3362e19d2ed5b88167089c6 1e4924daf1b5728fb395a08f47081bcbe6ea5a5c 1fd60e23d26ab173a724da50a72c84bd90f445ec 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./usr/lib/debug/.build-id/fe/33614a747703999448ccc947e30534256194f6.debug drwxr-xr-x root/root 0 2019-08-28 12:49 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2019-08-28 12:49 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 4362096 2019-08-28 12:49 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/biobambam2.debug drwxr-xr-x root/root 0 2019-08-28 12:49 ./usr/share/ drwxr-xr-x root/root 0 2019-08-28 12:49 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-08-28 12:49 ./usr/share/doc/biobambam2-dbgsym -> biobambam2 biobambam2_2.0.137+dfsg-1_mips64el.deb -------------------------------------- new Debian package, version 2.0. size 6352156 bytes: control archive=4304 bytes. 1261 bytes, 25 lines control 8686 bytes, 140 lines md5sums Package: biobambam2 Version: 2.0.137+dfsg-1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 70716 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.4), libgomp1 (>= 6), libmaus2-2 (>= 2.0.663), libstdc++6 (>= 9) Section: science Priority: optional Homepage: https://gitlab.com/german.tischler/biobambam2 Description: tools for early stage alignment file processing This package contains some tools for processing BAM files including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name drwxr-xr-x root/root 0 2019-08-28 12:49 ./ drwxr-xr-x root/root 0 2019-08-28 12:49 ./usr/ drwxr-xr-x root/root 0 2019-08-28 12:49 ./usr/bin/ -rwxr-xr-x root/root 980944 2019-08-28 12:49 ./usr/bin/bam12auxmerge -rwxr-xr-x root/root 846200 2019-08-28 12:49 ./usr/bin/bam12split -rwxr-xr-x root/root 846168 2019-08-28 12:49 ./usr/bin/bam12strip -rwxr-xr-x root/root 870928 2019-08-28 12:49 ./usr/bin/bamadapterclip -rwxr-xr-x root/root 1010360 2019-08-28 12:49 ./usr/bin/bamadapterfind -rwxr-xr-x root/root 878224 2019-08-28 12:49 ./usr/bin/bamalignfrac -rwxr-xr-x root/root 934536 2019-08-28 12:49 ./usr/bin/bamauxmerge -rwxr-xr-x root/root 2183392 2019-08-28 12:49 ./usr/bin/bamauxmerge2 -rwxr-xr-x root/root 850256 2019-08-28 12:49 ./usr/bin/bamauxsort -rwxr-xr-x root/root 300680 2019-08-28 12:49 ./usr/bin/bambisect -rwxr-xr-x root/root 841408 2019-08-28 12:49 ./usr/bin/bamcat -rwxr-xr-x root/root 723096 2019-08-28 12:49 ./usr/bin/bamchecksort -rwxr-xr-x root/root 816800 2019-08-28 12:49 ./usr/bin/bamclipXT -rwxr-xr-x root/root 883632 2019-08-28 12:49 ./usr/bin/bamclipreinsert -rwxr-xr-x root/root 1090928 2019-08-28 12:49 ./usr/bin/bamcollate2 -rwxr-xr-x root/root 1180224 2019-08-28 12:49 ./usr/bin/bamconsensus -rwxr-xr-x root/root 719104 2019-08-28 12:49 ./usr/bin/bamdepth -rwxr-xr-x root/root 770248 2019-08-28 12:49 ./usr/bin/bamdepthintersect -rwxr-xr-x root/root 1006912 2019-08-28 12:49 ./usr/bin/bamdownsamplerandom -rwxr-xr-x root/root 803848 2019-08-28 12:49 ./usr/bin/bamexplode -rwxr-xr-x root/root 651680 2019-08-28 12:49 ./usr/bin/bamexploderef -rwxr-xr-x root/root 316888 2019-08-28 12:49 ./usr/bin/bamfastcat -rwxr-xr-x root/root 748872 2019-08-28 12:49 ./usr/bin/bamfastexploderef -rwxr-xr-x root/root 330208 2019-08-28 12:49 ./usr/bin/bamfastnumextract -rwxr-xr-x 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./usr/share/man/man1/filtergtf.1.gz -rw-r--r-- root/root 1076 2019-08-28 12:49 ./usr/share/man/man1/normalisefasta.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 4827396 Build-Time: 4928 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 26 Job: biobambam2_2.0.137+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: biobambam2 Package-Time: 4967 Source-Version: 2.0.137+dfsg-1 Space: 4827396 Status: successful Version: 2.0.137+dfsg-1 -------------------------------------------------------------------------------- Finished at 2019-09-01T21:03:06Z Build needed 01:22:47, 4827396k disk space