sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | biobambam2 2.0.153+ds-1 (mips64el) Thu, 05 Mar 2020 14:19:05 +0000 | +==============================================================================+ Package: biobambam2 Version: 2.0.153+ds-1 Source Version: 2.0.153+ds-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-2fef3c86-35a7-4055-9adc-d59e1a4a26d3' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-GkJ2v5/resolver-g2LX5L' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-03-05-0818.28.pdiff [3599 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-03-05-0818.28.pdiff [14.5 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-03-05-0818.28.pdiff [3599 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-03-05-0818.28.pdiff [14.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [7944 kB] Fetched 8161 kB in 2s (4871 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'biobambam2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biobambam2.git Please use: git clone https://salsa.debian.org/med-team/biobambam2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 236 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.153+ds-1 (dsc) [2043 B] Get:2 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.153+ds-1 (tar) [231 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.153+ds-1 (diff) [3376 B] Fetched 236 kB in 1s (379 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/biobambam2-GkJ2v5/biobambam2-2.0.153+ds' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-GkJ2v5' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), pkg-config, libmaus2-dev (>= 2.0.695), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 12), pkg-config, libmaus2-dev (>= 2.0.695), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [431 B] Get:5 copy:/<>/apt_archive ./ Packages [522 B] Fetched 1910 B in 0s (99.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdmainutils build-essential cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-9-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbsd0 libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc1-mips64el-cross libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libmaus2-2:mips64el libmaus2-dev:mips64el libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:mips64el libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db pkg-config po-debconf sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-mips64el-linux-gnuabi64 gcc-9-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el glibc-doc manpages-dev:mips64el libstdc++-9-doc libstdc++-9-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:mips64el libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdmainutils build-essential cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-9-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbsd0 libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc1-mips64el-cross libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libmaus2-2:mips64el libmaus2-dev:mips64el libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:mips64el libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db pkg-config po-debconf sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 79.2 MB of archives. After this operation, 354 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-10-base mips64el 10-20200222-1 [195 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-9-base mips64el 9.2.1-30 [196 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.34-2cross5 [2313 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.15-1 [104 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.29-10 [2638 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.2.1-30 [1697 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.2.1-30 [10.7 MB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64-base amd64 9.2.1-24cross1 [195 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mips64el-linux-gnuabi64 amd64 9.2.1-24cross1 [6464 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [16.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.2.1-24cross1 [191 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.29-8cross1 [1324 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mips64el-cross all 1:9.2.1-24cross1 [69.2 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 9.2.1-24cross1 [76.6 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 9.2.1-24cross1 [7436 B] Get:39 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http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1192 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-4 [709 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.8 [6704 B] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-2 [104 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.5-1 [1320 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.9 [994 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 10-20200222-1 [69.6 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.15-1 [95.5 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.29-10 [2538 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 10-20200222-1 [7460 B] Get:83 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.4.19-1 [1068 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.15-1 [118 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.29-10 [2455 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 10-20200222-1 [89.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-9-dev mips64el 9.2.1-30 [247 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 10-20200222-1 [434 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mips64el libmaus2-2 mips64el 2.0.698+ds-1 [1045 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-2 [88.2 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-2 [191 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mips64el libmaus2-dev mips64el 2.0.698+ds-1 [2760 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-9-dev mips64el 9.2.1-30 [1730 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.2 MB in 2s (51.1 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12785 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... 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Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-2) ... Setting up libglib2.0-0:amd64 (2.62.5-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.9) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up gcc-9-mips64el-linux-gnuabi64-base:amd64 (9.2.1-24cross1) ... Setting up linux-libc-dev:mips64el (5.4.19-1) ... Setting up libc6-mips64el-cross (2.29-8cross1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up gcc-9-cross-base-mipsen (9.2.1-24cross1) ... Setting up libyaml-perl (1.30-1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.34-2cross5) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:mips64el (10-20200222-1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up pkg-config (0.29-6) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.15-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.29-10) ... Setting up linux-libc-dev-mips64el-cross (5.4.8-1cross1) ... Setting up cpp-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libgomp1-mips64el-cross (9.2.1-24cross1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-4) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:mips64el (9.2.1-30) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libatomic1-mips64el-cross (9.2.1-24cross1) ... Setting up libgcc1-mips64el-cross (1:9.2.1-24cross1) ... Setting up libstdc++-9-dev:amd64 (9.2.1-30) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up libc6-dev-mips64el-cross (2.29-8cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.2.1-30) ... Setting up autoconf (2.69-11.1) ... Setting up libstdc++6-mips64el-cross (9.2.1-24cross1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libgcc-9-dev-mips64el-cross (9.2.1-24cross1) ... Setting up build-essential (12.8) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libstdc++-9-dev-mips64el-cross (9.2.1-24cross1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mips64el (12.8) ... Setting up libcrypt1:mips64el (1:4.4.15-1) ... Setting up libgcc-s1:mips64el (10-20200222-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:mips64el (2.29-10) ... Setting up libcrypt-dev:mips64el (1:4.4.15-1) ... Setting up libc6-dev:mips64el (2.29-10) ... Setting up libstdc++6:mips64el (10-20200222-1) ... Setting up debhelper (12.9) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-2) ... Setting up libgomp1:mips64el (10-20200222-1) ... Setting up libatomic1:mips64el (10-20200222-1) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-2) ... Setting up libmaus2-2:mips64el (2.0.698+ds-1) ... Setting up libgcc-9-dev:mips64el (9.2.1-30) ... Setting up libmaus2-dev:mips64el (2.0.698+ds-1) ... Setting up libstdc++-9-dev:mips64el (9.2.1-30) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-4 dpkg-dev_1.19.7 g++-9_9.2.1-30 gcc-8_8.4.0-1 gcc-9_9.2.1-30 libc6-dev_2.29-10 libstdc++-9-dev_9.2.1-30 libstdc++-9-dev-mips64el-cross_9.2.1-24cross1 libstdc++6_10-20200222-1 libstdc++6-mips64el-cross_9.2.1-24cross1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-4 binutils-common_2.34-4 binutils-mips64el-linux-gnuabi64_2.34-2cross5 binutils-x86-64-linux-gnu_2.34-4 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-1 cpp-9_9.2.1-30 cpp-9-mips64el-linux-gnuabi64_9.2.1-24cross1 cpp-mips64el-linux-gnuabi64_4:9.2.1-4.1 cross-config_2.6.15-3 crossbuild-essential-mips64el_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-30 g++-9-mips64el-linux-gnuabi64_9.2.1-24cross1 g++-mips64el-linux-gnuabi64_4:9.2.1-4.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200222-1 gcc-8_8.4.0-1 gcc-8-base_8.4.0-1 gcc-9_9.2.1-30 gcc-9-base_9.2.1-30 gcc-9-cross-base-mipsen_9.2.1-24cross1 gcc-9-mips64el-linux-gnuabi64_9.2.1-24cross1 gcc-9-mips64el-linux-gnuabi64-base_9.2.1-24cross1 gcc-mips64el-linux-gnuabi64_4:9.2.1-4.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-2 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-2 libasan5_9.2.1-30 libatomic1_10-20200222-1 libatomic1-mips64el-cross_9.2.1-24cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-4 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-dev_2.29-10 libc6-dev-mips64el-cross_2.29-8cross1 libc6-mips64el-cross_2.29-8cross1 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10-20200222-1 libcom-err2_1.45.5-2 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1 libcrypt1_1:4.4.15-1 libctf-nobfd0_2.34-4 libctf0_2.34-4 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-3 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libgcc-8-dev_8.4.0-1 libgcc-9-dev_9.2.1-30 libgcc-9-dev-mips64el-cross_9.2.1-24cross1 libgcc-s1_10-20200222-1 libgcc1_1:10-20200222-1 libgcc1-mips64el-cross_1:9.2.1-24cross1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.5-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200222-1 libgomp1-mips64el-cross_9.2.1-24cross1 libgpg-error0_1.37-1 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10-20200222-1 liblocale-gettext-perl_1.07-4 liblsan0_10-20200222-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmaus2-2_2.0.698+ds-1 libmaus2-dev_2.0.698+ds-1 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.4.0-1 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libquadmath0_10-20200222-1 libseccomp2_2.4.2-2 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.5-2 libstdc++-9-dev_9.2.1-30 libstdc++-9-dev-mips64el-cross_9.2.1-24cross1 libstdc++6_10-20200222-1 libstdc++6-mips64el-cross_9.2.1-24cross1 libsub-override-perl_0.09-2 libsystemd0_244.3-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10-20200222-1 libubsan1_10-20200222-1 libuchardet0_0.0.6-3 libudev1_244.3-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-4 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.19-1 linux-libc-dev-mips64el-cross_5.4.8-1cross1 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: biobambam2 Binary: biobambam2 Architecture: any Version: 2.0.153+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://gitlab.com/german.tischler/biobambam2 Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/biobambam2 Vcs-Git: https://salsa.debian.org/med-team/biobambam2.git Build-Depends: debhelper-compat (= 12), pkg-config, libmaus2-dev (>= 2.0.695) Package-List: biobambam2 deb science optional arch=any Checksums-Sha1: 66f85d58e33a1b100b23284b3b2006d6e99345fc 231080 biobambam2_2.0.153+ds.orig.tar.xz e2010cb81a90c5d28b89dd3fd79152b3c8a22e21 3376 biobambam2_2.0.153+ds-1.debian.tar.xz Checksums-Sha256: ff57cb9ff71c7bf1b7f7a6c6df36561283d4d177fd3a8779e2475d06741198c9 231080 biobambam2_2.0.153+ds.orig.tar.xz 1daa8578328fd12b62cb897f2016d1e2c2aed33a91e0a57e4cd47d6f2cdf1f3d 3376 biobambam2_2.0.153+ds-1.debian.tar.xz Files: f390d3ff6c2446736eb33f9773b88904 231080 biobambam2_2.0.153+ds.orig.tar.xz 77716108edd1380e924fcff0299e5731 3376 biobambam2_2.0.153+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl46urARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFmmA/8DfSaXP2M9P6DHgktpfnjyY8Z1msjeh+W skKyJLs5CwC8QmE5W802CB0RF+xsdT5WNziQO8T/JA03K48examWNzeQOX6u9HQ4 y0CrUX1XbfVItOTgSSYRBpLa55oUQhtz89cEBNJfLelxcP9mh5MZQnDFBcBe4sqt RiJKJyNC6xRKTWqoRLI/x5ZYxCKY/iD6FP4kezvlFQ0jC7nws0d9nxp2NiQzpAPh dfE0dvB2DPoXZvPMhoa9TVpyJ9jcbN75ljZ6c5rZmNt7jsIPMizyzOURf5ujHzJQ Y/Byx4rbWCl6gQitvtKsCb9yjHKW3qtw9nfd1xGFVhBYd5BAF8jxpbS+r/pX3Wip 8vRkskFRFTL2p2gnc3yrOH0BOsM8qsJtYpdAbcYT9wzj9BbH2+JtN9f35cDI8O4A MZuFmEPcm2G1d09pGzbSZ3vdPD83XYQEhq9h0YIrekcxDvlQJJm56/WSU8fAI06j T2nBLmVceUODr5cqhtNKMhScHQ2NcZLBbuK1zyN1d0Zx3OWB/D8mP7ACfoCBIGhP 3BoBErKG0R5gubtStLYcP8eOeIgLkRJF4oL+MfmKzLw23oFaKe4VgvrAgZHHwI0C UvHJ25NI2ivuT42N/eim3ZVvEshq1xkpB6BFy+xVYBVIhJ/xAenqeaPOI7xAypFC T4Isl16hBus= =6WFh -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Feb 5 12:53:04 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./biobambam2_2.0.153+ds-1.dsc dpkg-source: info: extracting biobambam2 in /<> dpkg-source: info: unpacking biobambam2_2.0.153+ds.orig.tar.xz dpkg-source: info: unpacking biobambam2_2.0.153+ds-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-2fef3c86-35a7-4055-9adc-d59e1a4a26d3 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package biobambam2 dpkg-buildpackage: info: source version 2.0.153+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f config.log make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:3: installing './compile' configure.ac:2: installing './config.guess' configure.ac:2: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.mips64el checking build system type... x86_64-pc-linux-gnu checking host system type... mips64el-unknown-linux-gnuabi64 checking target system type... mips64el-unknown-linux-gnuabi64 checking how to print strings... printf checking for mips64el-linux-gnuabi64-gcc... mips64el-linux-gnuabi64-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... yes checking for mips64el-linux-gnuabi64-gcc option to accept ISO C89... none needed checking whether mips64el-linux-gnuabi64-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mips64el-linux-gnuabi64-gcc... /usr/mips64el-linux-gnuabi64/bin/ld checking if the linker (/usr/mips64el-linux-gnuabi64/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/mips64el-linux-gnuabi64-nm -B checking the name lister (/usr/bin/mips64el-linux-gnuabi64-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to mips64el-unknown-linux-gnuabi64 format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/mips64el-linux-gnuabi64/bin/ld option to reload object files... -r checking for mips64el-linux-gnuabi64-objdump... mips64el-linux-gnuabi64-objdump checking how to recognize dependent libraries... pass_all checking for mips64el-linux-gnuabi64-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for mips64el-linux-gnuabi64-ar... mips64el-linux-gnuabi64-ar checking for archiver @FILE support... @ checking for mips64el-linux-gnuabi64-strip... mips64el-linux-gnuabi64-strip checking for mips64el-linux-gnuabi64-ranlib... mips64el-linux-gnuabi64-ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/mips64el-linux-gnuabi64-nm -B output from mips64el-linux-gnuabi64-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mips64el-linux-gnuabi64-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... mips64el-linux-gnuabi64-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mips64el-linux-gnuabi64-gcc supports -fno-rtti -fno-exceptions... no checking for mips64el-linux-gnuabi64-gcc option to produce PIC... -fPIC -DPIC checking if mips64el-linux-gnuabi64-gcc PIC flag -fPIC -DPIC works... yes checking if mips64el-linux-gnuabi64-gcc static flag -static works... yes checking if mips64el-linux-gnuabi64-gcc supports -c -o file.o... yes checking if mips64el-linux-gnuabi64-gcc supports -c -o file.o... (cached) yes checking whether the mips64el-linux-gnuabi64-gcc linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mips64el-linux-gnuabi64-strip... (cached) mips64el-linux-gnuabi64-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of mips64el-linux-gnuabi64-gcc... none checking whether we are cross compiling... yes checking for mips64el-linux-gnuabi64-gcc... (cached) mips64el-linux-gnuabi64-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... (cached) yes checking for mips64el-linux-gnuabi64-gcc option to accept ISO C89... (cached) none needed checking whether mips64el-linux-gnuabi64-gcc understands -c and -o together... (cached) yes checking for mips64el-linux-gnuabi64-g++... mips64el-linux-gnuabi64-g++ checking whether we are using the GNU C++ compiler... yes checking whether mips64el-linux-gnuabi64-g++ accepts -g... yes checking how to run the C++ preprocessor... mips64el-linux-gnuabi64-g++ -E checking for ld used by mips64el-linux-gnuabi64-g++... /usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip checking if the linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) is GNU ld... yes checking whether the mips64el-linux-gnuabi64-g++ linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking for mips64el-linux-gnuabi64-g++ option to produce PIC... -fPIC -DPIC checking if mips64el-linux-gnuabi64-g++ PIC flag -fPIC -DPIC works... yes checking if mips64el-linux-gnuabi64-g++ static flag -static works... yes checking if mips64el-linux-gnuabi64-g++ supports -c -o file.o... yes checking if mips64el-linux-gnuabi64-g++ supports -c -o file.o... (cached) yes checking whether the mips64el-linux-gnuabi64-g++ linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of mips64el-linux-gnuabi64-g++... none checking whether the C++ compiler supports the -fsanitize=address flag... yes configure: Adding optimisation options to C compiler mips64el-linux-gnuabi64-gcc flags, full list now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security configure: Adding optimisation options to C++ compiler mips64el-linux-gnuabi64-g++ flags, full list now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security checking for mips64el-linux-gnuabi64-pkg-config... /usr/bin/mips64el-linux-gnuabi64-pkg-config checking pkg-config is at least version 0.9.0... yes checking for ANSI C header files... (cached) yes checking for libmaus2... yes checking whether we can compile a program using libmaus2... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE... yes checking whether libmaus2 has support for io_lib... no checking whether libmaus2 has support for iRODS... no checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for xerces_c... no configure: Using flags -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C compiler mips64el-linux-gnuabi64-gcc configure: Using flags -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C++ compiler mips64el-linux-gnuabi64-g++ checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/biobambam2/BamBamConfig.hpp config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtofastq-bamtofastq.o `test -f 'programs/bamtofastq.cpp' || echo './'`programs/bamtofastq.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtofastq-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicates-bammarkduplicates.o `test -f 'programs/bammarkduplicates.cpp' || echo './'`programs/bammarkduplicates.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsort-bamsort.o `test -f 'programs/bamsort.cpp' || echo './'`programs/bamsort.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammaskflags-bammaskflags.o `test -f 'programs/bammaskflags.cpp' || echo './'`programs/bammaskflags.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammaskflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrecompress-bamrecompress.o `test -f 'programs/bamrecompress.cpp' || echo './'`programs/bamrecompress.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrecompress-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterfind-bamadapterfind.o `test -f 'programs/bamadapterfind.cpp' || echo './'`programs/bamadapterfind.cpp programs/bamadapterfind.cpp: In destructor ‘LimitedLockedHeap::ScopeLimitedMutexLock::~ScopeLimitedMutexLock()’: programs/bamadapterfind.cpp:189:11: warning: throw will always call terminate() [-Wterminate] 189 | throw lme; | ^~~ programs/bamadapterfind.cpp:189:11: note: in C++11 destructors default to noexcept mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilteraux-bamfilteraux.o `test -f 'programs/bamfilteraux.cpp' || echo './'`programs/bamfilteraux.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilteraux-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxsort-bamauxsort.o `test -f 'programs/bamauxsort.cpp' || echo './'`programs/bamauxsort.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterclip-bamadapterclip.o `test -f 'programs/bamadapterclip.cpp' || echo './'`programs/bamadapterclip.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterclip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterclip-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamadapterclip programs/bamadapterclip-bamadapterclip.o biobambam2/bamadapterclip-Licensing.o biobambam2/bamadapterclip-ClipAdapters.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamadapterclip programs/bamadapterclip-bamadapterclip.o biobambam2/bamadapterclip-Licensing.o biobambam2/bamadapterclip-ClipAdapters.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamcollate2-bamcollate2.o `test -f 'programs/bamcollate2.cpp' || echo './'`programs/bamcollate2.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcollate2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcollate2-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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biobambam2/bamfixmateinformation-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamseqchksum-bamseqchksum.o `test -f 'programs/bamseqchksum.cpp' || echo './'`programs/bamseqchksum.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamseqchksum-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o 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biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastcat-bamfastcat.o `test -f 'programs/bamfastcat.cpp' || echo './'`programs/bamfastcat.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcffilterinfo programs/vcffilterinfo-vcffilterinfo.o biobambam2/vcffilterinfo-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcffilterinfo programs/vcffilterinfo-vcffilterinfo.o biobambam2/vcffilterinfo-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfpatchcontigprepend-vcfpatchcontigprepend.o `test -f 'programs/vcfpatchcontigprepend.cpp' || echo './'`programs/vcfpatchcontigprepend.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfpatchcontigprepend-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcfpatchcontigprepend programs/vcfpatchcontigprepend-vcfpatchcontigprepend.o biobambam2/vcfpatchcontigprepend-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcfpatchcontigprepend programs/vcfpatchcontigprepend-vcfpatchcontigprepend.o biobambam2/vcfpatchcontigprepend-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfconcat-vcfconcat.o `test -f 'programs/vcfconcat.cpp' || echo './'`programs/vcfconcat.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfconcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcfconcat programs/vcfconcat-vcfconcat.o biobambam2/vcfconcat-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcfconcat programs/vcfconcat-vcfconcat.o biobambam2/vcfconcat-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfsort-vcfsort.o `test -f 'programs/vcfsort.cpp' || echo './'`programs/vcfsort.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcfsort programs/vcfsort-vcfsort.o biobambam2/vcfsort-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcfsort programs/vcfsort-vcfsort.o biobambam2/vcfsort-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/filtergtf-filtergtf.o `test -f 'programs/filtergtf.cpp' || echo './'`programs/filtergtf.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/filtergtf-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o filtergtf programs/filtergtf-filtergtf.o biobambam2/filtergtf-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o filtergtf programs/filtergtf-filtergtf.o biobambam2/filtergtf-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamconsensus-bamconsensus.o `test -f 'programs/bamconsensus.cpp' || echo './'`programs/bamconsensus.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamconsensus-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamconsensus programs/bamconsensus-bamconsensus.o biobambam2/bamconsensus-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamconsensus programs/bamconsensus-bamconsensus.o biobambam2/bamconsensus-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfreplacecontigs-vcfreplacecontigs.o `test -f 'programs/vcfreplacecontigs.cpp' || echo './'`programs/vcfreplacecontigs.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfreplacecontigs-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcfreplacecontigs programs/vcfreplacecontigs-vcfreplacecontigs.o biobambam2/vcfreplacecontigs-Licensing.o -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcfreplacecontigs programs/vcfreplacecontigs-vcfreplacecontigs.o biobambam2/vcfreplacecontigs-Licensing.o -fopenmp -L/usr/lib/mips64el-linux-gnuabi64 -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/biobambam2-2.0.153\+ds/debian/biobambam2 AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/biobambam2/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c bamtofastq bammarkduplicates bamsort bammaskflags bamrecompress bamadapterfind bamfilteraux bamauxsort bamadapterclip bamcollate2 bam12auxmerge bam12split bam12strip bamreset bamrank bamclipreinsert bamclipXT bamzztoname bamindex bamfilterflags bamfilterrg bamdownsamplerandom bammarkduplicates2 bamcat bammerge bamsplit bamfastsplit bamsplitdiv bamchecksort fastqtobam bamfixmateinformation bamseqchksum normalisefasta bamfilterheader bamfilterheader2 bammdnm bammapdist bamvalidate bamflagsplit bamintervalcomment bamintervalcommenthist bamstreamingmarkduplicates bamalignfrac bamfilternames bamsormadup bamexplode bamexploderef bamfastexploderef bamfastnumextract bamranksort fastaexplod bamrecalculatecigar bamfiltermc bamnumericalindex bamnumericalindexstats bammarkduplicatesopt bamfilterlength bamauxmerge bamrefinterval bamscrapcount bamfilterrefid bamfillquery bamrefextract fastqtobam2 bamauxmerge2 bamreheader bamreplacechecksums bamfastcat populaterefcache bamfiltereofblocks bamdepth bamdepthintersect bamfilterk bamfixpairinfo bamfeaturecount '/<>/debian/biobambam2/usr/bin' libtool: install: /usr/bin/install -c bamtofastq /<>/debian/biobambam2/usr/bin/bamtofastq libtool: install: /usr/bin/install -c bammarkduplicates /<>/debian/biobambam2/usr/bin/bammarkduplicates libtool: install: /usr/bin/install -c bamsort /<>/debian/biobambam2/usr/bin/bamsort libtool: install: /usr/bin/install -c bammaskflags /<>/debian/biobambam2/usr/bin/bammaskflags libtool: install: /usr/bin/install -c bamrecompress /<>/debian/biobambam2/usr/bin/bamrecompress libtool: install: /usr/bin/install -c bamadapterfind /<>/debian/biobambam2/usr/bin/bamadapterfind libtool: install: /usr/bin/install -c bamfilteraux /<>/debian/biobambam2/usr/bin/bamfilteraux libtool: install: /usr/bin/install -c bamauxsort /<>/debian/biobambam2/usr/bin/bamauxsort libtool: install: /usr/bin/install -c bamadapterclip /<>/debian/biobambam2/usr/bin/bamadapterclip libtool: install: /usr/bin/install -c bamcollate2 /<>/debian/biobambam2/usr/bin/bamcollate2 libtool: install: /usr/bin/install -c bam12auxmerge /<>/debian/biobambam2/usr/bin/bam12auxmerge libtool: install: /usr/bin/install -c bam12split /<>/debian/biobambam2/usr/bin/bam12split libtool: install: /usr/bin/install -c bam12strip /<>/debian/biobambam2/usr/bin/bam12strip libtool: install: /usr/bin/install -c bamreset /<>/debian/biobambam2/usr/bin/bamreset libtool: install: /usr/bin/install -c bamrank /<>/debian/biobambam2/usr/bin/bamrank libtool: install: /usr/bin/install -c bamclipreinsert /<>/debian/biobambam2/usr/bin/bamclipreinsert libtool: install: /usr/bin/install -c bamclipXT /<>/debian/biobambam2/usr/bin/bamclipXT libtool: install: /usr/bin/install -c bamzztoname /<>/debian/biobambam2/usr/bin/bamzztoname libtool: install: /usr/bin/install -c bamindex /<>/debian/biobambam2/usr/bin/bamindex libtool: install: /usr/bin/install -c bamfilterflags /<>/debian/biobambam2/usr/bin/bamfilterflags libtool: install: /usr/bin/install -c bamfilterrg /<>/debian/biobambam2/usr/bin/bamfilterrg libtool: install: /usr/bin/install -c bamdownsamplerandom /<>/debian/biobambam2/usr/bin/bamdownsamplerandom libtool: install: /usr/bin/install -c bammarkduplicates2 /<>/debian/biobambam2/usr/bin/bammarkduplicates2 libtool: install: /usr/bin/install -c bamcat /<>/debian/biobambam2/usr/bin/bamcat libtool: install: /usr/bin/install -c bammerge /<>/debian/biobambam2/usr/bin/bammerge libtool: install: /usr/bin/install -c bamsplit /<>/debian/biobambam2/usr/bin/bamsplit libtool: install: /usr/bin/install -c bamfastsplit /<>/debian/biobambam2/usr/bin/bamfastsplit libtool: install: /usr/bin/install -c bamsplitdiv /<>/debian/biobambam2/usr/bin/bamsplitdiv libtool: install: /usr/bin/install -c bamchecksort /<>/debian/biobambam2/usr/bin/bamchecksort libtool: install: /usr/bin/install -c fastqtobam /<>/debian/biobambam2/usr/bin/fastqtobam libtool: install: /usr/bin/install -c bamfixmateinformation /<>/debian/biobambam2/usr/bin/bamfixmateinformation libtool: install: /usr/bin/install -c bamseqchksum /<>/debian/biobambam2/usr/bin/bamseqchksum libtool: install: /usr/bin/install -c normalisefasta /<>/debian/biobambam2/usr/bin/normalisefasta libtool: install: /usr/bin/install -c bamfilterheader /<>/debian/biobambam2/usr/bin/bamfilterheader libtool: install: /usr/bin/install -c bamfilterheader2 /<>/debian/biobambam2/usr/bin/bamfilterheader2 libtool: install: /usr/bin/install -c bammdnm /<>/debian/biobambam2/usr/bin/bammdnm libtool: install: /usr/bin/install -c bammapdist /<>/debian/biobambam2/usr/bin/bammapdist libtool: install: /usr/bin/install -c bamvalidate /<>/debian/biobambam2/usr/bin/bamvalidate libtool: install: /usr/bin/install -c bamflagsplit /<>/debian/biobambam2/usr/bin/bamflagsplit libtool: install: /usr/bin/install -c bamintervalcomment /<>/debian/biobambam2/usr/bin/bamintervalcomment libtool: install: /usr/bin/install -c bamintervalcommenthist /<>/debian/biobambam2/usr/bin/bamintervalcommenthist libtool: install: /usr/bin/install -c bamstreamingmarkduplicates /<>/debian/biobambam2/usr/bin/bamstreamingmarkduplicates libtool: install: /usr/bin/install -c bamalignfrac /<>/debian/biobambam2/usr/bin/bamalignfrac libtool: install: /usr/bin/install -c bamfilternames /<>/debian/biobambam2/usr/bin/bamfilternames libtool: install: /usr/bin/install -c bamsormadup /<>/debian/biobambam2/usr/bin/bamsormadup libtool: install: /usr/bin/install -c bamexplode /<>/debian/biobambam2/usr/bin/bamexplode libtool: install: /usr/bin/install -c bamexploderef /<>/debian/biobambam2/usr/bin/bamexploderef libtool: install: /usr/bin/install -c bamfastexploderef /<>/debian/biobambam2/usr/bin/bamfastexploderef libtool: install: /usr/bin/install -c bamfastnumextract /<>/debian/biobambam2/usr/bin/bamfastnumextract libtool: install: /usr/bin/install -c bamranksort /<>/debian/biobambam2/usr/bin/bamranksort libtool: install: /usr/bin/install -c fastaexplod /<>/debian/biobambam2/usr/bin/fastaexplod libtool: install: /usr/bin/install -c bamrecalculatecigar /<>/debian/biobambam2/usr/bin/bamrecalculatecigar libtool: install: /usr/bin/install -c bamfiltermc /<>/debian/biobambam2/usr/bin/bamfiltermc libtool: install: /usr/bin/install -c bamnumericalindex /<>/debian/biobambam2/usr/bin/bamnumericalindex libtool: install: /usr/bin/install -c bamnumericalindexstats /<>/debian/biobambam2/usr/bin/bamnumericalindexstats libtool: install: /usr/bin/install -c bammarkduplicatesopt /<>/debian/biobambam2/usr/bin/bammarkduplicatesopt libtool: install: /usr/bin/install -c bamfilterlength /<>/debian/biobambam2/usr/bin/bamfilterlength libtool: install: /usr/bin/install -c bamauxmerge /<>/debian/biobambam2/usr/bin/bamauxmerge libtool: install: /usr/bin/install -c bamrefinterval /<>/debian/biobambam2/usr/bin/bamrefinterval libtool: install: /usr/bin/install -c bamscrapcount /<>/debian/biobambam2/usr/bin/bamscrapcount libtool: install: /usr/bin/install -c bamfilterrefid /<>/debian/biobambam2/usr/bin/bamfilterrefid libtool: install: /usr/bin/install -c bamfillquery /<>/debian/biobambam2/usr/bin/bamfillquery libtool: install: /usr/bin/install -c bamrefextract /<>/debian/biobambam2/usr/bin/bamrefextract libtool: install: /usr/bin/install -c fastqtobam2 /<>/debian/biobambam2/usr/bin/fastqtobam2 libtool: install: /usr/bin/install -c bamauxmerge2 /<>/debian/biobambam2/usr/bin/bamauxmerge2 libtool: install: /usr/bin/install -c bamreheader /<>/debian/biobambam2/usr/bin/bamreheader libtool: install: /usr/bin/install -c bamreplacechecksums /<>/debian/biobambam2/usr/bin/bamreplacechecksums libtool: install: /usr/bin/install -c bamfastcat /<>/debian/biobambam2/usr/bin/bamfastcat libtool: install: /usr/bin/install -c populaterefcache /<>/debian/biobambam2/usr/bin/populaterefcache libtool: install: /usr/bin/install -c bamfiltereofblocks /<>/debian/biobambam2/usr/bin/bamfiltereofblocks libtool: install: /usr/bin/install -c bamdepth /<>/debian/biobambam2/usr/bin/bamdepth libtool: install: /usr/bin/install -c bamdepthintersect /<>/debian/biobambam2/usr/bin/bamdepthintersect libtool: install: /usr/bin/install -c bamfilterk /<>/debian/biobambam2/usr/bin/bamfilterk libtool: install: /usr/bin/install -c bamfixpairinfo /<>/debian/biobambam2/usr/bin/bamfixpairinfo libtool: install: /usr/bin/install -c bamfeaturecount /<>/debian/biobambam2/usr/bin/bamfeaturecount /bin/mkdir -p '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/bamtofastq.1 programs/bamsort.1 programs/bammarkduplicates.1 programs/bammarkduplicatesopt.1 programs/bammaskflags.1 programs/bamrecompress.1 programs/bamadapterfind.1 programs/bamfilteraux.1 programs/bamauxsort.1 programs/bamadapterclip.1 programs/bamcollate2.1 programs/bam12auxmerge.1 programs/bam12split.1 programs/bam12strip.1 programs/bamreset.1 programs/bamrank.1 programs/bamclipreinsert.1 programs/bamzztoname.1 programs/bamindex.1 programs/bamfilterflags.1 programs/bamfilterrg.1 programs/bamdownsamplerandom.1 programs/bammarkduplicates2.1 programs/bamcat.1 programs/bammerge.1 programs/bamsplit.1 programs/bamsplitdiv.1 programs/bamchecksort.1 programs/fastqtobam.1 programs/bamfixmateinformation.1 programs/normalisefasta.1 programs/bamfilterheader.1 programs/bamfilterheader2.1 programs/bammdnm.1 programs/bamseqchksum.1 programs/bamvalidate.1 programs/bamflagsplit.1 programs/bamintervalcomment.1 programs/bamstreamingmarkduplicates.1 programs/bamsormadup.1 '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/fastaexplod.1 programs/bamrecalculatecigar.1 programs/bamfiltermc.1 programs/bamfillquery.1 programs/bamalignfrac.1 programs/bamauxmerge.1 programs/bamauxmerge2.1 programs/bambisect.1 programs/bamclipXT.1 programs/bamconsensus.1 programs/filtergtf.1 programs/bamfeaturecount.1 '/<>/debian/biobambam2/usr/share/man/man1' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'biobambam2' in '../biobambam2_2.0.153+ds-1_mips64el.deb'. dpkg-deb: building package 'biobambam2-dbgsym' in '../biobambam2-dbgsym_2.0.153+ds-1_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../biobambam2_2.0.153+ds-1_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-03-05T15:41:13Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ biobambam2_2.0.153+ds-1_mips64el.changes: ----------------------------------------- Format: 1.8 Date: Wed, 05 Feb 2020 10:51:35 +0100 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 2.0.153+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: biobambam2 - tools for early stage alignment file processing Closes: 950643 Changes: biobambam2 (2.0.153+ds-1) unstable; urgency=medium . [ Steffen Moeller ] * d/control: Updated policy to 4.5.0 * d/changelog: Also excluding config.guess and config.sub * d/watch: - Changed version suffix dfsg to ds - Changed compression from .bz2 to .xz . [ Andreas Tille ] * Versioned Build-Depends: libmaus2-dev (>= 2.0.695) Closes: #950643 * New upstream version * Standards-Version: 4.5.0 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit. Checksums-Sha1: 7a9debb1ed17421989e5a5846d038769e717c3bd 198987192 biobambam2-dbgsym_2.0.153+ds-1_mips64el.deb de3cd00b92e1c88caaa181a48897b774d1930c9d 5005 biobambam2_2.0.153+ds-1_mips64el.buildinfo 1bda29145a29afaec86c8d94662804ca1d84bd74 5523428 biobambam2_2.0.153+ds-1_mips64el.deb Checksums-Sha256: 58e86f822b95645dacd53f2b182ed2de42e8fc6751424b9f924f74e1ce876909 198987192 biobambam2-dbgsym_2.0.153+ds-1_mips64el.deb c8573ad96da2b60238d9623544b9bca97d11dcb405e8eb64df61d76bc920abb1 5005 biobambam2_2.0.153+ds-1_mips64el.buildinfo bc3fe15ba544d430792473a196432e2319e95c1d35b2076829efa23178bcd0e7 5523428 biobambam2_2.0.153+ds-1_mips64el.deb Files: cd65095cb399e9fcc79236bdc87b164d 198987192 debug optional biobambam2-dbgsym_2.0.153+ds-1_mips64el.deb e7f910d99976cf4023c24ce89ade8299 5005 science optional biobambam2_2.0.153+ds-1_mips64el.buildinfo 8f0b54037a349e8cf67b576e64bc6ea5 5523428 science optional biobambam2_2.0.153+ds-1_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: biobambam2 Binary: biobambam2 Architecture: mips64el Version: 2.0.153+ds-1 Checksums-Md5: cd65095cb399e9fcc79236bdc87b164d 198987192 biobambam2-dbgsym_2.0.153+ds-1_mips64el.deb 8f0b54037a349e8cf67b576e64bc6ea5 5523428 biobambam2_2.0.153+ds-1_mips64el.deb Checksums-Sha1: 7a9debb1ed17421989e5a5846d038769e717c3bd 198987192 biobambam2-dbgsym_2.0.153+ds-1_mips64el.deb 1bda29145a29afaec86c8d94662804ca1d84bd74 5523428 biobambam2_2.0.153+ds-1_mips64el.deb Checksums-Sha256: 58e86f822b95645dacd53f2b182ed2de42e8fc6751424b9f924f74e1ce876909 198987192 biobambam2-dbgsym_2.0.153+ds-1_mips64el.deb bc3fe15ba544d430792473a196432e2319e95c1d35b2076829efa23178bcd0e7 5523428 biobambam2_2.0.153+ds-1_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 05 Mar 2020 15:41:10 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-4), binutils-common (= 2.34-4), binutils-x86-64-linux-gnu (= 2.34-4), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.4.0-1), cpp-9 (= 9.2.1-30), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.9), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-2), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.38-4), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-30), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10-20200222-1), gcc-8 (= 8.4.0-1), gcc-8-base (= 8.4.0-1), gcc-9 (= 9.2.1-30), gcc-9-base (= 9.2.1-30), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-4), gzip (= 1.10-1), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-6), libarchive-zip-perl (= 1.67-2), libasan5 (= 9.2.1-30), libatomic1 (= 10-20200222-1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2+b1), libbinutils (= 2.34-4), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-10), libc-dev-bin (= 2.29-10), libc6 (= 2.29-10), libc6-dev (= 2.29-10), libcap-ng0 (= 0.7.9-2.1+b2), libcc1-0 (= 10-20200222-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.15-1), libcrypt1 (= 1:4.4.15-1), libctf-nobfd0 (= 2.34-4), libctf0 (= 2.34-4), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.251), libdebhelper-perl (= 12.9), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi7 (= 3.3-3), libfile-stripnondeterminism-perl (= 1.6.3-2), libgcc-8-dev (= 8.4.0-1), libgcc-9-dev (= 9.2.1-30), libgcc-s1 (= 10-20200222-1), libgcc1 (= 1:10-20200222-1), libgcrypt20 (= 1.8.5-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.62.5-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10-20200222-1), libgpg-error0 (= 1.37-1), libicu63 (= 63.2-2), libisl22 (= 0.22.1-1), libitm1 (= 10-20200222-1), liblsan0 (= 10-20200222-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmaus2-2 (= 2.0.698+ds-1), libmaus2-dev (= 2.0.698+ds-1), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.4.0-1), libncursesw6 (= 6.2-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10-20200222-1), libseccomp2 (= 2.4.2-2), libselinux1 (= 3.0-1+b1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.2.1-30), libstdc++6 (= 10-20200222-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 244.3-1), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10-20200222-1), libubsan1 (= 10-20200222-1), libuchardet0 (= 0.0.6-3), libudev1 (= 244.3-1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.10+dfsg-4), linux-libc-dev (= 5.4.19-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), pkg-config (= 0.29-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1580896295" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ biobambam2-dbgsym_2.0.153+ds-1_mips64el.deb ------------------------------------------- new Debian package, version 2.0. size 198987192 bytes: control archive=3936 bytes. 3432 bytes, 12 lines control 8044 bytes, 76 lines md5sums Package: biobambam2-dbgsym Source: biobambam2 Version: 2.0.153+ds-1 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 208039 Depends: biobambam2 (= 2.0.153+ds-1) Section: debug Priority: optional Description: debug symbols for biobambam2 Build-Ids: 02bf7510e010bebf9f4ea19017834a0a8e9b0ea7 03fc4d936e89cec6543f9d0ddf5a35c56324f7be 12298f4d5101587214db9dbc1f681ec523abd376 12620f48d74e0b0a90e9bb691137d2e3eb891cba 3599e167056b5528b5ba62bd6eff692dc4230d60 37a9b60d84f6778b13f07ae5e0c9c079278628d0 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./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/biobambam2.debug drwxr-xr-x root/root 0 2020-02-05 09:51 ./usr/share/ drwxr-xr-x root/root 0 2020-02-05 09:51 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-02-05 09:51 ./usr/share/doc/biobambam2-dbgsym -> biobambam2 biobambam2_2.0.153+ds-1_mips64el.deb ------------------------------------ new Debian package, version 2.0. size 5523428 bytes: control archive=4068 bytes. 1263 bytes, 25 lines control 8139 bytes, 130 lines md5sums Package: biobambam2 Version: 2.0.153+ds-1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 59689 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libmaus2-2 (>= 2.0.698+ds), libstdc++6 (>= 9) Section: science Priority: optional Homepage: https://gitlab.com/german.tischler/biobambam2 Description: tools for early stage alignment file processing This package contains some tools for processing BAM files including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name drwxr-xr-x root/root 0 2020-02-05 09:51 ./ drwxr-xr-x root/root 0 2020-02-05 09:51 ./usr/ drwxr-xr-x root/root 0 2020-02-05 09:51 ./usr/bin/ -rwxr-xr-x root/root 1018928 2020-02-05 09:51 ./usr/bin/bam12auxmerge -rwxr-xr-x root/root 880112 2020-02-05 09:51 ./usr/bin/bam12split -rwxr-xr-x root/root 880080 2020-02-05 09:51 ./usr/bin/bam12strip -rwxr-xr-x root/root 904928 2020-02-05 09:51 ./usr/bin/bamadapterclip -rwxr-xr-x root/root 1044304 2020-02-05 09:51 ./usr/bin/bamadapterfind -rwxr-xr-x root/root 907936 2020-02-05 09:51 ./usr/bin/bamalignfrac -rwxr-xr-x root/root 964608 2020-02-05 09:51 ./usr/bin/bamauxmerge -rwxr-xr-x root/root 722872 2020-02-05 09:51 ./usr/bin/bamauxmerge2 -rwxr-xr-x root/root 884168 2020-02-05 09:51 ./usr/bin/bamauxsort -rwxr-xr-x root/root 875608 2020-02-05 09:51 ./usr/bin/bamcat -rwxr-xr-x root/root 753072 2020-02-05 09:51 ./usr/bin/bamchecksort -rwxr-xr-x root/root 846688 2020-02-05 09:51 ./usr/bin/bamclipXT -rwxr-xr-x root/root 917584 2020-02-05 09:51 ./usr/bin/bamclipreinsert -rwxr-xr-x root/root 1124816 2020-02-05 09:51 ./usr/bin/bamcollate2 -rwxr-xr-x root/root 749016 2020-02-05 09:51 ./usr/bin/bamdepth -rwxr-xr-x root/root 825920 2020-02-05 09:51 ./usr/bin/bamdepthintersect -rwxr-xr-x root/root 1036744 2020-02-05 09:51 ./usr/bin/bamdownsamplerandom -rwxr-xr-x root/root 829512 2020-02-05 09:51 ./usr/bin/bamexplode -rwxr-xr-x root/root 681448 2020-02-05 09:51 ./usr/bin/bamexploderef -rwxr-xr-x root/root 312888 2020-02-05 09:51 ./usr/bin/bamfastcat -rwxr-xr-x root/root 778664 2020-02-05 09:51 ./usr/bin/bamfastexploderef -rwxr-xr-x root/root 326056 2020-02-05 09:51 ./usr/bin/bamfastnumextract -rwxr-xr-x root/root 292488 2020-02-05 09:51 ./usr/bin/bamfastsplit -rwxr-xr-x root/root 1205576 2020-02-05 09:51 ./usr/bin/bamfeaturecount -rwxr-xr-x root/root 968720 2020-02-05 09:51 ./usr/bin/bamfillquery -rwxr-xr-x root/root 879992 2020-02-05 09:51 ./usr/bin/bamfilteraux -rwxr-xr-x root/root 45792 2020-02-05 09:51 ./usr/bin/bamfiltereofblocks -rwxr-xr-x root/root 956560 2020-02-05 09:51 ./usr/bin/bamfilterflags -rwxr-xr-x root/root 947632 2020-02-05 09:51 ./usr/bin/bamfilterheader -rwxr-xr-x root/root 244952 2020-02-05 09:51 ./usr/bin/bamfilterheader2 -rwxr-xr-x root/root 884728 2020-02-05 09:51 ./usr/bin/bamfilterk -rwxr-xr-x root/root 926800 2020-02-05 09:51 ./usr/bin/bamfilterlength -rwxr-xr-x root/root 939408 2020-02-05 09:51 ./usr/bin/bamfiltermc -rwxr-xr-x root/root 875904 2020-02-05 09:51 ./usr/bin/bamfilternames -rwxr-xr-x root/root 879936 2020-02-05 09:51 ./usr/bin/bamfilterrefid -rwxr-xr-x root/root 875856 2020-02-05 09:51 ./usr/bin/bamfilterrg -rwxr-xr-x root/root 859792 2020-02-05 09:51 ./usr/bin/bamfixmateinformation -rwxr-xr-x root/root 935264 2020-02-05 09:51 ./usr/bin/bamfixpairinfo -rwxr-xr-x root/root 837904 2020-02-05 09:51 ./usr/bin/bamflagsplit -rwxr-xr-x root/root 294936 2020-02-05 09:51 ./usr/bin/bamindex -rwxr-xr-x root/root 1179120 2020-02-05 09:51 ./usr/bin/bamintervalcomment -rwxr-xr-x root/root 766464 2020-02-05 09:51 ./usr/bin/bamintervalcommenthist -rwxr-xr-x root/root 769488 2020-02-05 09:51 ./usr/bin/bammapdist -rwxr-xr-x root/root 1278096 2020-02-05 09:51 ./usr/bin/bammarkduplicates -rwxr-xr-x root/root 1332920 2020-02-05 09:51 ./usr/bin/bammarkduplicates2 -rwxr-xr-x root/root 1422104 2020-02-05 09:51 ./usr/bin/bammarkduplicatesopt -rwxr-xr-x root/root 879784 2020-02-05 09:51 ./usr/bin/bammaskflags -rwxr-xr-x root/root 511544 2020-02-05 09:51 ./usr/bin/bammdnm -rwxr-xr-x root/root 943456 2020-02-05 09:51 ./usr/bin/bammerge -rwxr-xr-x root/root 211104 2020-02-05 09:51 ./usr/bin/bamnumericalindex -rwxr-xr-x root/root 253768 2020-02-05 09:51 ./usr/bin/bamnumericalindexstats -rwxr-xr-x root/root 884048 2020-02-05 09:51 ./usr/bin/bamrank -rwxr-xr-x root/root 851216 2020-02-05 09:51 ./usr/bin/bamranksort -rwxr-xr-x root/root 960568 2020-02-05 09:51 ./usr/bin/bamrecalculatecigar -rwxr-xr-x root/root 388160 2020-02-05 09:51 ./usr/bin/bamrecompress -rwxr-xr-x root/root 829952 2020-02-05 09:51 ./usr/bin/bamrefextract -rwxr-xr-x root/root 917992 2020-02-05 09:51 ./usr/bin/bamrefinterval -rwxr-xr-x root/root 274544 2020-02-05 09:51 ./usr/bin/bamreheader -rwxr-xr-x root/root 274624 2020-02-05 09:51 ./usr/bin/bamreplacechecksums -rwxr-xr-x root/root 888304 2020-02-05 09:51 ./usr/bin/bamreset -rwxr-xr-x root/root 744896 2020-02-05 09:51 ./usr/bin/bamscrapcount -rwxr-xr-x root/root 821304 2020-02-05 09:51 ./usr/bin/bamseqchksum -rwxr-xr-x root/root 2384240 2020-02-05 09:51 ./usr/bin/bamsormadup -rwxr-xr-x root/root 1607344 2020-02-05 09:51 ./usr/bin/bamsort -rwxr-xr-x root/root 825384 2020-02-05 09:51 ./usr/bin/bamsplit -rwxr-xr-x root/root 778680 2020-02-05 09:51 ./usr/bin/bamsplitdiv -rwxr-xr-x root/root 1162744 2020-02-05 09:51 ./usr/bin/bamstreamingmarkduplicates -rwxr-xr-x root/root 1182480 2020-02-05 09:51 ./usr/bin/bamtofastq -rwxr-xr-x root/root 939208 2020-02-05 09:51 ./usr/bin/bamvalidate -rwxr-xr-x root/root 884096 2020-02-05 09:51 ./usr/bin/bamzztoname -rwxr-xr-x root/root 96352 2020-02-05 09:51 ./usr/bin/fastaexplod -rwxr-xr-x root/root 367104 2020-02-05 09:51 ./usr/bin/fastqtobam -rwxr-xr-x root/root 824992 2020-02-05 09:51 ./usr/bin/fastqtobam2 -rwxr-xr-x root/root 251912 2020-02-05 09:51 ./usr/bin/normalisefasta -rwxr-xr-x root/root 139096 2020-02-05 09:51 ./usr/bin/populaterefcache drwxr-xr-x root/root 0 2020-02-05 09:51 ./usr/share/ drwxr-xr-x root/root 0 2020-02-05 09:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-05 09:51 ./usr/share/doc/biobambam2/ -rw-r--r-- root/root 708 2020-02-05 09:51 ./usr/share/doc/biobambam2/changelog.Debian.gz -rw-r--r-- root/root 3107 2020-01-24 11:37 ./usr/share/doc/biobambam2/changelog.gz -rw-r--r-- root/root 3190 2020-02-05 09:51 ./usr/share/doc/biobambam2/copyright drwxr-xr-x root/root 0 2020-02-05 09:51 ./usr/share/man/ drwxr-xr-x root/root 0 2020-02-05 09:51 ./usr/share/man/man1/ -rw-r--r-- root/root 1777 2020-02-05 09:51 ./usr/share/man/man1/bam12auxmerge.1.gz -rw-r--r-- root/root 1110 2020-02-05 09:51 ./usr/share/man/man1/bam12split.1.gz -rw-r--r-- root/root 1090 2020-02-05 09:51 ./usr/share/man/man1/bam12strip.1.gz -rw-r--r-- root/root 1220 2020-02-05 09:51 ./usr/share/man/man1/bamadapterclip.1.gz -rw-r--r-- root/root 2072 2020-02-05 09:51 ./usr/share/man/man1/bamadapterfind.1.gz -rw-r--r-- root/root 893 2020-02-05 09:51 ./usr/share/man/man1/bamalignfrac.1.gz -rw-r--r-- root/root 1579 2020-02-05 09:51 ./usr/share/man/man1/bamauxmerge.1.gz -rw-r--r-- root/root 1629 2020-02-05 09:51 ./usr/share/man/man1/bamauxmerge2.1.gz -rw-r--r-- root/root 1037 2020-02-05 09:51 ./usr/share/man/man1/bamauxsort.1.gz -rw-r--r-- root/root 823 2020-02-05 09:51 ./usr/share/man/man1/bambisect.1.gz -rw-r--r-- root/root 1296 2020-02-05 09:51 ./usr/share/man/man1/bamcat.1.gz -rw-r--r-- root/root 629 2020-02-05 09:51 ./usr/share/man/man1/bamchecksort.1.gz -rw-r--r-- root/root 942 2020-02-05 09:51 ./usr/share/man/man1/bamclipXT.1.gz -rw-r--r-- root/root 1089 2020-02-05 09:51 ./usr/share/man/man1/bamclipreinsert.1.gz -rw-r--r-- root/root 3442 2020-02-05 09:51 ./usr/share/man/man1/bamcollate2.1.gz -rw-r--r-- root/root 1099 2020-02-05 09:51 ./usr/share/man/man1/bamconsensus.1.gz -rw-r--r-- root/root 2755 2020-02-05 09:51 ./usr/share/man/man1/bamdownsamplerandom.1.gz -rw-r--r-- root/root 2278 2020-02-05 09:51 ./usr/share/man/man1/bamfeaturecount.1.gz -rw-r--r-- root/root 1477 2020-02-05 09:51 ./usr/share/man/man1/bamfillquery.1.gz -rw-r--r-- root/root 1151 2020-02-05 09:51 ./usr/share/man/man1/bamfilteraux.1.gz -rw-r--r-- root/root 1430 2020-02-05 09:51 ./usr/share/man/man1/bamfilterflags.1.gz -rw-r--r-- root/root 1196 2020-02-05 09:51 ./usr/share/man/man1/bamfilterheader.1.gz -rw-r--r-- root/root 1199 2020-02-05 09:51 ./usr/share/man/man1/bamfilterheader2.1.gz -rw-r--r-- root/root 1317 2020-02-05 09:51 ./usr/share/man/man1/bamfiltermc.1.gz -rw-r--r-- root/root 1093 2020-02-05 09:51 ./usr/share/man/man1/bamfilterrg.1.gz -rw-r--r-- root/root 1506 2020-02-05 09:51 ./usr/share/man/man1/bamfixmateinformation.1.gz -rw-r--r-- root/root 1625 2020-02-05 09:51 ./usr/share/man/man1/bamflagsplit.1.gz -rw-r--r-- root/root 568 2020-02-05 09:51 ./usr/share/man/man1/bamindex.1.gz -rw-r--r-- root/root 1955 2020-02-05 09:51 ./usr/share/man/man1/bamintervalcomment.1.gz -rw-r--r-- root/root 2558 2020-02-05 09:51 ./usr/share/man/man1/bammarkduplicates.1.gz -rw-r--r-- root/root 2679 2020-02-05 09:51 ./usr/share/man/man1/bammarkduplicates2.1.gz -rw-r--r-- root/root 2738 2020-02-05 09:51 ./usr/share/man/man1/bammarkduplicatesopt.1.gz -rw-r--r-- root/root 1492 2020-02-05 09:51 ./usr/share/man/man1/bammaskflags.1.gz -rw-r--r-- root/root 1625 2020-02-05 09:51 ./usr/share/man/man1/bammdnm.1.gz -rw-r--r-- root/root 1458 2020-02-05 09:51 ./usr/share/man/man1/bammerge.1.gz -rw-r--r-- root/root 1147 2020-02-05 09:51 ./usr/share/man/man1/bamrank.1.gz -rw-r--r-- root/root 1507 2020-02-05 09:51 ./usr/share/man/man1/bamrecalculatecigar.1.gz -rw-r--r-- root/root 1065 2020-02-05 09:51 ./usr/share/man/man1/bamrecompress.1.gz -rw-r--r-- root/root 1733 2020-02-05 09:51 ./usr/share/man/man1/bamreset.1.gz -rw-r--r-- root/root 2194 2020-02-05 09:51 ./usr/share/man/man1/bamseqchksum.1.gz -rw-r--r-- root/root 1955 2020-02-05 09:51 ./usr/share/man/man1/bamsormadup.1.gz -rw-r--r-- root/root 3787 2020-02-05 09:51 ./usr/share/man/man1/bamsort.1.gz -rw-r--r-- root/root 951 2020-02-05 09:51 ./usr/share/man/man1/bamsplit.1.gz -rw-r--r-- root/root 982 2020-02-05 09:51 ./usr/share/man/man1/bamsplitdiv.1.gz -rw-r--r-- root/root 2097 2020-02-05 09:51 ./usr/share/man/man1/bamstreamingmarkduplicates.1.gz -rw-r--r-- root/root 3269 2020-02-05 09:51 ./usr/share/man/man1/bamtofastq.1.gz -rw-r--r-- root/root 2033 2020-02-05 09:51 ./usr/share/man/man1/bamvalidate.1.gz -rw-r--r-- root/root 1088 2020-02-05 09:51 ./usr/share/man/man1/bamzztoname.1.gz -rw-r--r-- root/root 967 2020-02-05 09:51 ./usr/share/man/man1/fastaexplod.1.gz -rw-r--r-- root/root 2594 2020-02-05 09:51 ./usr/share/man/man1/fastqtobam.1.gz -rw-r--r-- root/root 671 2020-02-05 09:51 ./usr/share/man/man1/filtergtf.1.gz -rw-r--r-- root/root 1076 2020-02-05 09:51 ./usr/share/man/man1/normalisefasta.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [562 B] Get:5 copy:/<>/apt_archive ./ Packages [651 B] Fetched 2176 B in 0s (116 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libjson-xs-perl libfreezethaw-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 9436 kB of archives. After this operation, 27.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [856 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.1 [19.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.19-2 [529 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.1-3 [661 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.19-2 [889 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b2 [71.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libberkeleydb-perl amd64 0.62-1+b1 [124 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-5 [105 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.46-1 [223 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b3 [38.4 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.43-2 [15.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b1 [26.0 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 4 [7148 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-2 [321 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.067-1 [212 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3100-1 [39.0 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.22-1 [369 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.26-1 [27.1 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.43-1 [83.2 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.12-1 [36.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-perl all 4.02000-2 [88.8 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003006-1 [58.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.008001-2 [331 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [35.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.55.0 [1312 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9436 kB in 0s (33.7 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21960 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.1_all.deb ... Unpacking netbase (6.1) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.19-2_amd64.deb ... Unpacking gpgconf (2.2.19-2) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up libapt-pkg-perl (0.1.36+b2) ... Setting up libberkeleydb-perl:amd64 (0.62-1+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.10-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libio-pty-perl (1:1.12-1) ... Setting up libclone-perl (0.43-2) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b2) ... Setting up libssl1.1:amd64 (1.1.1d-2) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdevel-size-perl (0.83-1+b1) ... Setting up libsqlite3-0:amd64 (3.31.1-3) ... Setting up libfuture-perl (0.43-1) ... Setting up libyaml-libyaml-perl (0.81+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (4) ... Setting up libmldbm-perl (2.05-2) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.3-7) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libio-async-perl (0.75-1) ... Setting up patchutils (0.3.4-2+b1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.26-1) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up liblinux-epoll-perl (0.017-1) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b2) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libipc-run-perl (20180523.0-2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3100-1) ... Setting up libsub-name-perl (0.26-1) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up libjson-perl (4.02000-2) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up netbase (6.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b3) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-4) ... Setting up liburi-perl (1.76-2) ... Setting up libnet-ssleay-perl (1.88-2) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libtype-tiny-perl (1.008001-2) ... Setting up libnet-dns-perl (1.22-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libio-async-loop-epoll-perl (0.20-1) ... Setting up libhtml-parser-perl (3.72-5) ... Setting up gpgconf (2.2.19-2) ... Setting up libio-socket-ssl-perl (2.067-1) ... Setting up gpg (2.2.19-2) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libcgi-pm-perl (4.46-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003006-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.55.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.29-10) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 4918360 Build-Time: 4898 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 19 Job: biobambam2_2.0.153+ds-1 Lintian: pass Machine Architecture: amd64 Package: biobambam2 Package-Time: 4928 Source-Version: 2.0.153+ds-1 Space: 4918360 Status: successful Version: 2.0.153+ds-1 -------------------------------------------------------------------------------- Finished at 2020-03-05T15:41:13Z Build needed 01:22:08, 4918360k disk space