sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | biobambam2 2.0.164+ds-1 (ppc64el) Sat, 30 May 2020 13:50:10 +0000 | +==============================================================================+ Package: biobambam2 Version: 2.0.164+ds-1 Source Version: 2.0.164+ds-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-15e788ba-36af-4888-a1af-89996784ecf6' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-92dQMD/resolver-1xiifm' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-05-30-0801.37.pdiff [3890 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-05-30-0801.37.pdiff [3890 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-05-30-0801.37.pdiff [1853 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-05-30-0801.37.pdiff [1853 B] Get:6 http://debian.oregonstate.edu/debian unstable/main ppc64el Packages [8032 kB] Fetched 8240 kB in 2s (5364 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'biobambam2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biobambam2.git Please use: git clone https://salsa.debian.org/med-team/biobambam2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1277 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.164+ds-1 (dsc) [2075 B] Get:2 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.164+ds-1 (tar) [244 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.164+ds-1 (diff) [1032 kB] Fetched 1277 kB in 1s (1496 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/biobambam2-92dQMD/biobambam2-2.0.164+ds' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-92dQMD' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkg-config, libmaus2-dev (>= 2.0.719), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 13), pkg-config, libmaus2-dev (>= 2.0.719), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [430 B] Get:5 copy:/<>/apt_archive ./ Packages [521 B] Fetched 1908 B in 0s (86.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdmainutils build-essential cpp-9-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-10-base:ppc64el gcc-10-cross-base gcc-9-base:ppc64el gcc-9-cross-base gcc-9-powerpc64le-linux-gnu gcc-9-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan5-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libbsd0 libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:ppc64el libgcc-9-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libglib2.0-0 libgomp1:ppc64el libgomp1-ppc64el-cross libicu63 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libmaus2-2:ppc64el libmaus2-dev:ppc64el libpipeline1 libquadmath0:ppc64el libquadmath0-ppc64el-cross libsigsegv2 libstdc++-9-dev libstdc++-9-dev:ppc64el libstdc++-9-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db pkg-config po-debconf sensible-utils ucf zlib1g:ppc64el zlib1g-dev:ppc64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el glibc-doc manpages-dev:ppc64el libstdc++-9-doc libstdc++-9-doc:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:ppc64el libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdmainutils build-essential cpp-9-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-10-base:ppc64el gcc-10-cross-base gcc-9-base:ppc64el gcc-9-cross-base gcc-9-powerpc64le-linux-gnu gcc-9-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan5-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libbsd0 libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:ppc64el libgcc-9-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libglib2.0-0 libgomp1:ppc64el libgomp1-ppc64el-cross libicu63 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libmaus2-2:ppc64el libmaus2-dev:ppc64el libpipeline1 libquadmath0:ppc64el libquadmath0-ppc64el-cross libsigsegv2 libstdc++-9-dev libstdc++-9-dev:ppc64el libstdc++-9-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db pkg-config po-debconf sbuild-build-depends-main-dummy:ppc64el sensible-utils ucf zlib1g:ppc64el zlib1g-dev:ppc64el 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 86.1 MB of archives. After this operation, 396 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-10-base ppc64el 10.1.0-3 [197 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-9-base ppc64el 9.3.0-13 [197 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0042 [73.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-powerpc64le-linux-gnu amd64 2.34-8 [2254 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-8 [2631 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-13 [1701 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-13 [10.7 MB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-powerpc64le-linux-gnu-base amd64 9.3.0-13cross1 [197 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-powerpc64le-linux-gnu amd64 9.3.0-13cross1 [6746 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-powerpc64le-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.3.0-13cross1 [193 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.1.0-3cross1 [194 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-ppc64el-cross all 2.30-2cross1 [1524 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-ppc64el-cross all 10.1.0-3cross1 [30.8 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-ppc64el-cross all 10.1.0-3cross1 [106 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-ppc64el-cross all 10.1.0-3cross1 [28.4 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-ppc64el-cross all 10.1.0-3cross1 [9716 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-ppc64el-cross all 9.3.0-13cross1 [401 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-ppc64el-cross all 10.1.0-3cross1 [155 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-ppc64el-cross all 10.1.0-3cross1 [317 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-ppc64el-cross all 10.1.0-3cross1 [504 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-ppc64el-cross all 10.1.0-3cross1 [147 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0-ppc64el-cross all 10.1.0-3cross1 [152 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-ppc64el-cross all 9.3.0-13cross1 [1266 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-powerpc64le-linux-gnu amd64 9.3.0-13cross1 [7135 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-powerpc64le-linux-gnu amd64 4:9.2.1-3.1 [1480 B] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-ppc64el-cross all 5.4.19-1cross1 [1167 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-ppc64el-cross all 2.30-2cross1 [2651 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-ppc64el-cross all 9.3.0-13cross1 [1731 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-powerpc64le-linux-gnu amd64 9.3.0-13cross1 [7342 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-powerpc64le-linux-gnu amd64 4:9.2.1-3.1 [1188 B] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5 [709 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-ppc64el all 12.8 [6652 B] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.1 [187 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.1-1 [14.9 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.2-1 [1343 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.1 [1012 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-s1 ppc64el 10.1.0-3 [30.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt1 ppc64el 1:4.4.16-1 [97.9 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6 ppc64el 2.30-8 [2817 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main ppc64el libasan5 ppc64el 9.3.0-13 [408 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main ppc64el libatomic1 ppc64el 10.1.0-3 [9876 B] Get:91 http://debian.oregonstate.edu/debian unstable/main ppc64el linux-libc-dev ppc64el 5.6.14-1 [1108 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt-dev ppc64el 1:4.4.16-1 [121 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6-dev ppc64el 2.30-8 [2658 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main ppc64el libgomp1 ppc64el 10.1.0-3 [108 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main ppc64el libitm1 ppc64el 10.1.0-3 [28.8 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main ppc64el liblsan0 ppc64el 10.1.0-3 [155 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main ppc64el libtsan0 ppc64el 10.1.0-3 [325 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++6 ppc64el 10.1.0-3 [546 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main ppc64el libubsan1 ppc64el 10.1.0-3 [147 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main ppc64el libquadmath0 ppc64el 10.1.0-3 [153 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-9-dev ppc64el 9.3.0-13 [1257 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main ppc64el libmaus2-2 ppc64el 2.0.719+dfsg-1 [1313 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-2 [94.7 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2 [195 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main ppc64el libmaus2-dev ppc64el 2.0.719+dfsg-1 [2614 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++-9-dev ppc64el 9.3.0-13 [1751 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 86.1 MB in 4s (20.7 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12643 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... 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Preparing to unpack .../106-sbuild-build-depends-main-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.64.2-1) ... No schema files found: doing nothing. Setting up libc6-ppc64el-cross (2.30-2cross1) ... Setting up libdebhelper-perl (13.1) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:ppc64el (5.6.14-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up gcc-9-powerpc64le-linux-gnu-base:amd64 (9.3.0-13cross1) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-3) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cpp-9-powerpc64le-linux-gnu (9.3.0-13cross1) ... Setting up gcc-10-base:ppc64el (10.1.0-3) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up pkg-config (0.29.2-1) ... Setting up gcc-9-cross-base (9.3.0-13cross1) ... Setting up gcc-10-cross-base (10.1.0-3cross1) ... Setting up libitm1-ppc64el-cross (10.1.0-3cross1) ... Setting up libatomic1-ppc64el-cross (10.1.0-3cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up linux-libc-dev-ppc64el-cross (5.4.19-1cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.30-8) ... Setting up libgcc-s1-ppc64el-cross (10.1.0-3cross1) ... Setting up binutils-powerpc64le-linux-gnu (2.34-8) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up cpp-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Setting up gcc-9-base:ppc64el (9.3.0-13) ... Setting up libfile-stripnondeterminism-perl (1.8.1-1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-13) ... Setting up libc6-dev-ppc64el-cross (2.30-2cross1) ... Setting up libtool (2.4.6-14) ... Setting up libquadmath0-ppc64el-cross (10.1.0-3cross1) ... Setting up libasan5-ppc64el-cross (9.3.0-13cross1) ... Setting up m4 (1.4.18-4) ... Setting up libgomp1-ppc64el-cross (10.1.0-3cross1) ... Setting up liblsan0-ppc64el-cross (10.1.0-3cross1) ... Setting up libtsan0-ppc64el-cross (10.1.0-3cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0042) ... Setting up g++-9 (9.3.0-13) ... Setting up libstdc++6-ppc64el-cross (10.1.0-3cross1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.1-1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up build-essential (12.8) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libubsan1-ppc64el-cross (10.1.0-3cross1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-9-dev-ppc64el-cross (9.3.0-13cross1) ... Setting up gcc-9-powerpc64le-linux-gnu (9.3.0-13cross1) ... Setting up po-debconf (1.0.21) ... Setting up libstdc++-9-dev-ppc64el-cross (9.3.0-13cross1) ... Setting up gcc-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-9-powerpc64le-linux-gnu (9.3.0-13cross1) ... Setting up g++-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-ppc64el (12.8) ... Setting up libcrypt1:ppc64el (1:4.4.16-1) ... Setting up libgcc-s1:ppc64el (10.1.0-3) ... Setting up dh-autoreconf (19) ... Setting up libc6:ppc64el (2.30-8) ... Setting up libcrypt-dev:ppc64el (1:4.4.16-1) ... Setting up libc6-dev:ppc64el (2.30-8) ... Setting up libstdc++6:ppc64el (10.1.0-3) ... Setting up liblsan0:ppc64el (10.1.0-3) ... Setting up libitm1:ppc64el (10.1.0-3) ... Setting up libtsan0:ppc64el (10.1.0-3) ... Setting up debhelper (13.1) ... Setting up zlib1g:ppc64el (1:1.2.11.dfsg-2) ... Setting up libgomp1:ppc64el (10.1.0-3) ... Setting up libasan5:ppc64el (9.3.0-13) ... Setting up libquadmath0:ppc64el (10.1.0-3) ... Setting up libatomic1:ppc64el (10.1.0-3) ... Setting up libubsan1:ppc64el (10.1.0-3) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-2) ... Setting up libmaus2-2:ppc64el (2.0.719+dfsg-1) ... Setting up libgcc-9-dev:ppc64el (9.3.0-13) ... Setting up libmaus2-dev:ppc64el (2.0.719+dfsg-1) ... Setting up libstdc++-9-dev:ppc64el (9.3.0-13) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2 (2020-04-29) amd64 (x86_64) Toolchain package versions: binutils_2.34-8 dpkg-dev_1.19.7 g++-9_9.3.0-13 gcc-9_9.3.0-13 libc6-dev_2.30-8 libstdc++-9-dev_9.3.0-13 libstdc++-9-dev-ppc64el-cross_9.3.0-13cross1 libstdc++6_10.1.0-3 libstdc++6-ppc64el-cross_10.1.0-3cross1 linux-libc-dev_5.6.14-1 Package versions: adduser_3.118 apt_2.1.5 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8 binutils-common_2.34-8 binutils-powerpc64le-linux-gnu_2.34-8 binutils-x86-64-linux-gnu_2.34-8 bsdmainutils_11.1.2+b1 bsdutils_1:2.35.2-2 build-essential_12.8 bzip2_1.0.8-3 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-4 cpp-9_9.3.0-13 cpp-9-powerpc64le-linux-gnu_9.3.0-13cross1 cpp-powerpc64le-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-ppc64el_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debian-archive-keyring_2019.1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.2-2 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-13 g++-9-powerpc64le-linux-gnu_9.3.0-13cross1 g++-powerpc64le-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10.1.0-3 gcc-10-cross-base_10.1.0-3cross1 gcc-8-base_8.4.0-4 gcc-9_9.3.0-13 gcc-9-base_9.3.0-13 gcc-9-cross-base_9.3.0-13cross1 gcc-9-powerpc64le-linux-gnu_9.3.0-13cross1 gcc-9-powerpc64le-linux-gnu-base_9.3.0-13cross1 gcc-powerpc64le-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.5 libarchive-zip-perl_1.68-1 libasan5_9.3.0-13 libasan5-ppc64el-cross_9.3.0-13cross1 libatomic1_10.1.0-3 libatomic1-ppc64el-cross_10.1.0-3cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.34-8 libblkid1_2.35.2-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-3 libc-bin_2.30-8 libc-dev-bin_2.30-8 libc6_2.30-8 libc6-dev_2.30-8 libc6-dev-ppc64el-cross_2.30-2cross1 libc6-ppc64el-cross_2.30-2cross1 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10.1.0-3 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-8 libctf0_2.34-8 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.2-2 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.8.1-1 libfile-which-perl_1.23-1 libgcc-9-dev_9.3.0-13 libgcc-9-dev-ppc64el-cross_9.3.0-13cross1 libgcc-s1_10.1.0-3 libgcc-s1-ppc64el-cross_10.1.0-3cross1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10.1.0-3 libgomp1-ppc64el-cross_10.1.0-3cross1 libgpg-error0_1.37-1 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.1.0-3 libitm1-ppc64el-cross_10.1.0-3cross1 liblocale-gettext-perl_1.07-4 liblsan0_10.1.0-3 liblsan0-ppc64el-cross_10.1.0-3cross1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmaus2-2_2.0.719+dfsg-1 libmaus2-dev_2.0.719+dfsg-1 libmount1_2.35.2-2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.4.0-4 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.2-1 libpipeline1_1.5.2-2 libquadmath0_10.1.0-3 libquadmath0-ppc64el-cross_10.1.0-3cross1 libseccomp2_2.4.3-1+b1 libselinux1_3.0-1+b3 libsemanage-common_3.0-1 libsemanage1_3.0-1+b3 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.2-2 libss2_1.45.6-1 libstdc++-9-dev_9.3.0-13 libstdc++-9-dev-ppc64el-cross_9.3.0-13cross1 libstdc++6_10.1.0-3 libstdc++6-ppc64el-cross_10.1.0-3cross1 libsub-override-perl_0.09-2 libsystemd0_245.5-3 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.1.0-3 libtsan0-ppc64el-cross_10.1.0-3cross1 libubsan1_10.1.0-3 libubsan1-ppc64el-cross_10.1.0-3cross1 libuchardet0_0.0.6-3 libudev1_245.5-3 libunistring2_0.9.10-2 libuuid1_2.35.2-2 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.6.14-1 linux-libc-dev-ppc64el-cross_5.4.19-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-1 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.35.2-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.2-1 perl-base_5.30.2-1 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.2-1 pkg-config_0.29.2-1 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0042 util-linux_2.35.2-2 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: biobambam2 Binary: biobambam2 Architecture: any Version: 2.0.164+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://gitlab.com/german.tischler/biobambam2 Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/biobambam2 Vcs-Git: https://salsa.debian.org/med-team/biobambam2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), pkg-config, libmaus2-dev (>= 2.0.719) Package-List: biobambam2 deb science optional arch=any Checksums-Sha1: 9ea7a629ca60ed2bb0ab6f83a7410f7f0e9c00d1 243692 biobambam2_2.0.164+ds.orig.tar.xz 3ee5723a67075f669ef7ea4b7ef6a8626be08e43 1031704 biobambam2_2.0.164+ds-1.debian.tar.xz Checksums-Sha256: fb76551be85abee9e676d7f77cbc904331c74c58e905712a91fb95b05b7f00bf 243692 biobambam2_2.0.164+ds.orig.tar.xz efaa9eb4e9be4ae6064b72b7a636676ccc9efe5b2a4de9340a0ab41f7700438c 1031704 biobambam2_2.0.164+ds-1.debian.tar.xz Files: 48ef797bc7060ca48b016e0494fe3716 243692 biobambam2_2.0.164+ds.orig.tar.xz 9fca2b3a5e96db3c76b936b1ac34819f 1031704 biobambam2_2.0.164+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl7PcM4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFAhRAAmJwsplo1GjU4yDYLTQbxwp+y8aHDHXIC P/446JaREOvlrRq4K2M1w7FRek5PjIYGROGxVsEud6ssHGwnc0ZZdn7VX7/LYB3U KnLTt+pKNplLEdkFgu8sX9rVCaLIvO3GDZxJGw9/ceGSFF9yYxuG1lGQ3J05YAkj yH45gSYziz1JgCoeNbQbeCCgpipYc9dEHq2F0zvxCAXHiXjJVP/lggwqRNoJMJDO pQBQoSoEwRr+bHlZnMPcPXDYPa6Rj8PJDHWSKjnW+cFfjFsQPJhb08hS/Lp5ryg+ owhSAYxFsssSwLJLSIIe93muWPE9KfLpcyMxYE/dI7dZ2Nt+oJT/BjjPZdCLnp+8 oWWWpYmdO8ebuRgiJDtGUM7tkIuFpaKqyrowQ7DMjWIVipL75LysArFUkJ+5202H SRMy8yY7pM+P490dwiIdU2dWRZk8uBlElqVMmJp1jrNa2llO4n9KUACKN8tljhF9 sqlzY3U7nie/AS7BlzhRtu9kyZEmQh/FnKZdkknSJwBdYOSMC6LwKLSGbqBM4d5e QeOuOL30wW267X+ROZ/sUKYr4Ii2c+Eeci4v6ceWGNgmFWx7w0rfzBE5VyeRtMCw kIvDaQ6otUvFjDfCB/+Wh5wwV2oX0CgX7pkY7Wynx094P0rRanmu1fGU9Zp3IgR6 zKfYPLsXQpc= =Naj5 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu May 28 08:05:34 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./biobambam2_2.0.164+ds-1.dsc dpkg-source: info: extracting biobambam2 in /<> dpkg-source: info: unpacking biobambam2_2.0.164+ds.orig.tar.xz dpkg-source: info: unpacking biobambam2_2.0.164+ds-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-15e788ba-36af-4888-a1af-89996784ecf6 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package biobambam2 dpkg-buildpackage: info: source version 2.0.164+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pranav Ballaney dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f config.log make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:3: installing './compile' configure.ac:2: installing './config.guess' configure.ac:2: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=powerpc64le-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.ppc64el checking build system type... x86_64-pc-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking target system type... powerpc64le-unknown-linux-gnu checking how to print strings... printf checking for powerpc64le-linux-gnu-gcc... powerpc64le-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether powerpc64le-linux-gnu-gcc accepts -g... yes checking for powerpc64le-linux-gnu-gcc option to accept ISO C89... none needed checking whether powerpc64le-linux-gnu-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by powerpc64le-linux-gnu-gcc... /usr/powerpc64le-linux-gnu/bin/ld checking if the linker (/usr/powerpc64le-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/powerpc64le-linux-gnu-nm -B checking the name lister (/usr/bin/powerpc64le-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to powerpc64le-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/powerpc64le-linux-gnu/bin/ld option to reload object files... -r checking for powerpc64le-linux-gnu-objdump... powerpc64le-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for powerpc64le-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for powerpc64le-linux-gnu-ar... powerpc64le-linux-gnu-ar checking for archiver @FILE support... @ checking for powerpc64le-linux-gnu-strip... powerpc64le-linux-gnu-strip checking for powerpc64le-linux-gnu-ranlib... powerpc64le-linux-gnu-ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/powerpc64le-linux-gnu-nm -B output from powerpc64le-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for powerpc64le-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... powerpc64le-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if powerpc64le-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for powerpc64le-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if powerpc64le-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if powerpc64le-linux-gnu-gcc static flag -static works... yes checking if powerpc64le-linux-gnu-gcc supports -c -o file.o... yes checking if powerpc64le-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the powerpc64le-linux-gnu-gcc linker (/usr/powerpc64le-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for powerpc64le-linux-gnu-strip... (cached) powerpc64le-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of powerpc64le-linux-gnu-gcc... none checking whether we are cross compiling... yes checking for powerpc64le-linux-gnu-gcc... (cached) powerpc64le-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether powerpc64le-linux-gnu-gcc accepts -g... (cached) yes checking for powerpc64le-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether powerpc64le-linux-gnu-gcc understands -c and -o together... (cached) yes checking for powerpc64le-linux-gnu-g++... powerpc64le-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether powerpc64le-linux-gnu-g++ accepts -g... yes checking how to run the C++ preprocessor... powerpc64le-linux-gnu-g++ -E checking for ld used by powerpc64le-linux-gnu-g++... /usr/powerpc64le-linux-gnu/bin/ld checking if the linker (/usr/powerpc64le-linux-gnu/bin/ld) is GNU ld... yes checking whether the powerpc64le-linux-gnu-g++ linker (/usr/powerpc64le-linux-gnu/bin/ld) supports shared libraries... yes checking for powerpc64le-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if powerpc64le-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if powerpc64le-linux-gnu-g++ static flag -static works... yes checking if powerpc64le-linux-gnu-g++ supports -c -o file.o... yes checking if powerpc64le-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the powerpc64le-linux-gnu-g++ linker (/usr/powerpc64le-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of powerpc64le-linux-gnu-g++... none checking whether the C++ compiler supports the -fsanitize=address flag... yes configure: Adding optimisation options to C compiler powerpc64le-linux-gnu-gcc flags, full list now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security configure: Adding optimisation options to C++ compiler powerpc64le-linux-gnu-g++ flags, full list now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security checking for powerpc64le-linux-gnu-pkg-config... /usr/bin/powerpc64le-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for ANSI C header files... (cached) yes checking for libmaus2 >= 2.0.713... yes checking whether we can compile a program using libmaus2... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE... yes checking whether libmaus2 has support for io_lib... no checking whether libmaus2 has support for iRODS... no checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for xerces-c >= 3.1.1... no configure: Using flags -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C compiler powerpc64le-linux-gnu-gcc configure: Using flags -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C++ compiler powerpc64le-linux-gnu-g++ checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/biobambam2/BamBamConfig.hpp config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtofastq-bamtofastq.o `test -f 'programs/bamtofastq.cpp' || echo './'`programs/bamtofastq.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtofastq-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicates-bammarkduplicates.o `test -f 'programs/bammarkduplicates.cpp' || echo './'`programs/bammarkduplicates.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsort-bamsort.o `test -f 'programs/bamsort.cpp' || echo './'`programs/bamsort.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammaskflags-bammaskflags.o `test -f 'programs/bammaskflags.cpp' || echo './'`programs/bammaskflags.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammaskflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrecompress-bamrecompress.o `test -f 'programs/bamrecompress.cpp' || echo './'`programs/bamrecompress.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrecompress-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterfind-bamadapterfind.o `test -f 'programs/bamadapterfind.cpp' || echo './'`programs/bamadapterfind.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilteraux-bamfilteraux.o `test -f 'programs/bamfilteraux.cpp' || echo './'`programs/bamfilteraux.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilteraux-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxsort-bamauxsort.o `test -f 'programs/bamauxsort.cpp' || echo './'`programs/bamauxsort.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterclip-bamadapterclip.o `test -f 'programs/bamadapterclip.cpp' || echo './'`programs/bamadapterclip.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time 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biobambam2/bamcollate2-AttachRank.o biobambam2/bamcollate2-ResetAlignment.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamcollate2 programs/bamcollate2-bamcollate2.o biobambam2/bamcollate2-Licensing.o biobambam2/bamcollate2-AttachRank.o biobambam2/bamcollate2-ResetAlignment.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12auxmerge-bam12auxmerge.o `test -f 'programs/bam12auxmerge.cpp' || echo './'`programs/bam12auxmerge.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H 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biobambam2/bam12strip-Strip12.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreset-bamreset.o `test -f 'programs/bamreset.cpp' || echo './'`programs/bamreset.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreset-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreset-ResetAlignment.o `test -f 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powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamindex-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 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powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamintervalcomment-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamintervalcomment programs/bamintervalcomment-bamintervalcomment.o biobambam2/bamintervalcomment-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamintervalcomment programs/bamintervalcomment-bamintervalcomment.o biobambam2/bamintervalcomment-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamintervalcommenthist-bamintervalcommenthist.o `test -f 'programs/bamintervalcommenthist.cpp' || echo './'`programs/bamintervalcommenthist.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamintervalcommenthist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp 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`test -f 'programs/bamfilternames.cpp' || echo './'`programs/bamfilternames.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilternames-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilternames programs/bamfilternames-bamfilternames.o biobambam2/bamfilternames-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilternames programs/bamfilternames-bamfilternames.o biobambam2/bamfilternames-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsormadup-bamsormadup.o `test -f 'programs/bamsormadup.cpp' || echo './'`programs/bamsormadup.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsormadup-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp 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biobambam2/bamfilterk-DepthInterval.o biobambam2/bamfilterk-RunEOFFilter.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixpairinfo-bamfixpairinfo.o `test -f 'programs/bamfixpairinfo.cpp' || echo './'`programs/bamfixpairinfo.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixpairinfo-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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biobambam2/bamconsensus-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamconsensus programs/bamconsensus-bamconsensus.o biobambam2/bamconsensus-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfreplacecontigs-vcfreplacecontigs.o `test -f 'programs/vcfreplacecontigs.cpp' || echo './'`programs/vcfreplacecontigs.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. 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-Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammarkduplicatesoptdist programs/bammarkduplicatesoptdist-bammarkduplicatesoptdist.o biobambam2/bammarkduplicatesoptdist-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicatesoptdist programs/bammarkduplicatesoptdist-bammarkduplicatesoptdist.o biobambam2/bammarkduplicatesoptdist-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfdiff-vcfdiff.o `test -f 'programs/vcfdiff.cpp' || echo './'`programs/vcfdiff.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfdiff-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcfdiff programs/vcfdiff-vcfdiff.o biobambam2/vcfdiff-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcfdiff programs/vcfdiff-vcfdiff.o biobambam2/vcfdiff-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsimpledepth-bamsimpledepth.o `test -f 'programs/bamsimpledepth.cpp' || echo './'`programs/bamsimpledepth.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsimpledepth-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsimpledepth-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsimpledepth programs/bamsimpledepth-bamsimpledepth.o biobambam2/bamsimpledepth-Licensing.o biobambam2/bamsimpledepth-DepthInterval.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsimpledepth programs/bamsimpledepth-bamsimpledepth.o biobambam2/bamsimpledepth-Licensing.o biobambam2/bamsimpledepth-DepthInterval.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdepthmerge-bamdepthmerge.o `test -f 'programs/bamdepthmerge.cpp' || echo './'`programs/bamdepthmerge.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepthmerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamdepthmerge programs/bamdepthmerge-bamdepthmerge.o biobambam2/bamdepthmerge-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdepthmerge programs/bamdepthmerge-bamdepthmerge.o biobambam2/bamdepthmerge-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamcountflags-bamcountflags.o `test -f 'programs/bamcountflags.cpp' || echo './'`programs/bamcountflags.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcountflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamcountflags programs/bamcountflags-bamcountflags.o biobambam2/bamcountflags-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamcountflags programs/bamcountflags-bamcountflags.o biobambam2/bamcountflags-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcffilterfilterflags-vcffilterfilterflags.o `test -f 'programs/vcffilterfilterflags.cpp' || echo './'`programs/vcffilterfilterflags.cpp powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcffilterfilterflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o vcffilterfilterflags programs/vcffilterfilterflags-vcffilterfilterflags.o biobambam2/vcffilterfilterflags-Licensing.o -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz libtool: link: powerpc64le-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcffilterfilterflags programs/vcffilterfilterflags-vcffilterfilterflags.o biobambam2/vcffilterfilterflags-Licensing.o -fopenmp -L/usr/lib/powerpc64le-linux-gnu -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lz -fopenmp make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/biobambam2-2.0.164\+ds/debian/biobambam2 AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/biobambam2/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c bamtofastq bammarkduplicates bamsort bammaskflags bamrecompress bamadapterfind bamfilteraux bamauxsort bamadapterclip bamcollate2 bam12auxmerge bam12split bam12strip bamreset bamrank bamclipreinsert bamclipXT bamzztoname bamindex bamfilterflags bamfilterrg bamdownsamplerandom bammarkduplicates2 bamcat bammerge bamsplit bamfastsplit bamsplitdiv bamchecksort fastqtobam bamfixmateinformation bamseqchksum normalisefasta bamfilterheader bamfilterheader2 bammdnm bammapdist bamvalidate bamflagsplit bamintervalcomment bamintervalcommenthist bamstreamingmarkduplicates bamalignfrac bamfilternames bamsormadup bamexplode bamexploderef bamfastexploderef bamfastnumextract bamranksort fastaexplod bamrecalculatecigar bamfiltermc bamnumericalindex bamnumericalindexstats bammarkduplicatesopt bamfilterlength bamauxmerge bamrefinterval bamscrapcount bamfilterrefid bamfillquery bamrefextract fastqtobam2 bamauxmerge2 bamreheader bamreplacechecksums bamfastcat populaterefcache bamfiltereofblocks bamdepth bamdepthintersect bamfilterk bamfixpairinfo bamfeaturecount '/<>/debian/biobambam2/usr/bin' libtool: install: /usr/bin/install -c bamtofastq /<>/debian/biobambam2/usr/bin/bamtofastq libtool: install: /usr/bin/install -c bammarkduplicates /<>/debian/biobambam2/usr/bin/bammarkduplicates libtool: install: /usr/bin/install -c bamsort /<>/debian/biobambam2/usr/bin/bamsort libtool: install: /usr/bin/install -c bammaskflags /<>/debian/biobambam2/usr/bin/bammaskflags libtool: install: /usr/bin/install -c bamrecompress /<>/debian/biobambam2/usr/bin/bamrecompress libtool: install: /usr/bin/install -c bamadapterfind /<>/debian/biobambam2/usr/bin/bamadapterfind libtool: install: /usr/bin/install -c bamfilteraux /<>/debian/biobambam2/usr/bin/bamfilteraux libtool: install: /usr/bin/install -c bamauxsort /<>/debian/biobambam2/usr/bin/bamauxsort libtool: install: /usr/bin/install -c bamadapterclip /<>/debian/biobambam2/usr/bin/bamadapterclip libtool: install: /usr/bin/install -c bamcollate2 /<>/debian/biobambam2/usr/bin/bamcollate2 libtool: install: /usr/bin/install -c bam12auxmerge /<>/debian/biobambam2/usr/bin/bam12auxmerge libtool: install: /usr/bin/install -c bam12split /<>/debian/biobambam2/usr/bin/bam12split libtool: install: /usr/bin/install -c bam12strip /<>/debian/biobambam2/usr/bin/bam12strip libtool: install: /usr/bin/install -c bamreset /<>/debian/biobambam2/usr/bin/bamreset libtool: install: /usr/bin/install -c bamrank /<>/debian/biobambam2/usr/bin/bamrank libtool: install: /usr/bin/install -c bamclipreinsert /<>/debian/biobambam2/usr/bin/bamclipreinsert libtool: install: /usr/bin/install -c bamclipXT /<>/debian/biobambam2/usr/bin/bamclipXT libtool: install: /usr/bin/install -c bamzztoname /<>/debian/biobambam2/usr/bin/bamzztoname libtool: install: /usr/bin/install -c bamindex /<>/debian/biobambam2/usr/bin/bamindex libtool: install: /usr/bin/install -c bamfilterflags /<>/debian/biobambam2/usr/bin/bamfilterflags libtool: install: /usr/bin/install -c bamfilterrg /<>/debian/biobambam2/usr/bin/bamfilterrg libtool: install: /usr/bin/install -c bamdownsamplerandom /<>/debian/biobambam2/usr/bin/bamdownsamplerandom libtool: install: /usr/bin/install -c bammarkduplicates2 /<>/debian/biobambam2/usr/bin/bammarkduplicates2 libtool: install: /usr/bin/install -c bamcat /<>/debian/biobambam2/usr/bin/bamcat libtool: install: /usr/bin/install -c bammerge /<>/debian/biobambam2/usr/bin/bammerge libtool: install: /usr/bin/install -c bamsplit /<>/debian/biobambam2/usr/bin/bamsplit libtool: install: /usr/bin/install -c bamfastsplit /<>/debian/biobambam2/usr/bin/bamfastsplit libtool: install: /usr/bin/install -c bamsplitdiv /<>/debian/biobambam2/usr/bin/bamsplitdiv libtool: install: /usr/bin/install -c bamchecksort /<>/debian/biobambam2/usr/bin/bamchecksort libtool: install: /usr/bin/install -c fastqtobam /<>/debian/biobambam2/usr/bin/fastqtobam libtool: install: /usr/bin/install -c bamfixmateinformation /<>/debian/biobambam2/usr/bin/bamfixmateinformation libtool: install: /usr/bin/install -c bamseqchksum /<>/debian/biobambam2/usr/bin/bamseqchksum libtool: install: /usr/bin/install -c normalisefasta /<>/debian/biobambam2/usr/bin/normalisefasta libtool: install: /usr/bin/install -c bamfilterheader /<>/debian/biobambam2/usr/bin/bamfilterheader libtool: install: /usr/bin/install -c bamfilterheader2 /<>/debian/biobambam2/usr/bin/bamfilterheader2 libtool: install: /usr/bin/install -c bammdnm /<>/debian/biobambam2/usr/bin/bammdnm libtool: install: /usr/bin/install -c bammapdist /<>/debian/biobambam2/usr/bin/bammapdist libtool: install: /usr/bin/install -c bamvalidate /<>/debian/biobambam2/usr/bin/bamvalidate libtool: install: /usr/bin/install -c bamflagsplit /<>/debian/biobambam2/usr/bin/bamflagsplit libtool: install: /usr/bin/install -c bamintervalcomment /<>/debian/biobambam2/usr/bin/bamintervalcomment libtool: install: /usr/bin/install -c bamintervalcommenthist /<>/debian/biobambam2/usr/bin/bamintervalcommenthist libtool: install: /usr/bin/install -c bamstreamingmarkduplicates /<>/debian/biobambam2/usr/bin/bamstreamingmarkduplicates libtool: install: /usr/bin/install -c bamalignfrac /<>/debian/biobambam2/usr/bin/bamalignfrac libtool: install: /usr/bin/install -c bamfilternames /<>/debian/biobambam2/usr/bin/bamfilternames libtool: install: /usr/bin/install -c bamsormadup /<>/debian/biobambam2/usr/bin/bamsormadup libtool: install: /usr/bin/install -c bamexplode /<>/debian/biobambam2/usr/bin/bamexplode libtool: install: /usr/bin/install -c bamexploderef /<>/debian/biobambam2/usr/bin/bamexploderef libtool: install: /usr/bin/install -c bamfastexploderef /<>/debian/biobambam2/usr/bin/bamfastexploderef libtool: install: /usr/bin/install -c bamfastnumextract /<>/debian/biobambam2/usr/bin/bamfastnumextract libtool: install: /usr/bin/install -c bamranksort /<>/debian/biobambam2/usr/bin/bamranksort libtool: install: /usr/bin/install -c fastaexplod /<>/debian/biobambam2/usr/bin/fastaexplod libtool: install: /usr/bin/install -c bamrecalculatecigar /<>/debian/biobambam2/usr/bin/bamrecalculatecigar libtool: install: /usr/bin/install -c bamfiltermc /<>/debian/biobambam2/usr/bin/bamfiltermc libtool: install: /usr/bin/install -c bamnumericalindex /<>/debian/biobambam2/usr/bin/bamnumericalindex libtool: install: /usr/bin/install -c bamnumericalindexstats /<>/debian/biobambam2/usr/bin/bamnumericalindexstats libtool: install: /usr/bin/install -c bammarkduplicatesopt /<>/debian/biobambam2/usr/bin/bammarkduplicatesopt libtool: install: /usr/bin/install -c bamfilterlength /<>/debian/biobambam2/usr/bin/bamfilterlength libtool: install: /usr/bin/install -c bamauxmerge /<>/debian/biobambam2/usr/bin/bamauxmerge libtool: install: /usr/bin/install -c bamrefinterval /<>/debian/biobambam2/usr/bin/bamrefinterval libtool: install: /usr/bin/install -c bamscrapcount /<>/debian/biobambam2/usr/bin/bamscrapcount libtool: install: /usr/bin/install -c bamfilterrefid /<>/debian/biobambam2/usr/bin/bamfilterrefid libtool: install: /usr/bin/install -c bamfillquery /<>/debian/biobambam2/usr/bin/bamfillquery libtool: install: /usr/bin/install -c bamrefextract /<>/debian/biobambam2/usr/bin/bamrefextract libtool: install: /usr/bin/install -c fastqtobam2 /<>/debian/biobambam2/usr/bin/fastqtobam2 libtool: install: /usr/bin/install -c bamauxmerge2 /<>/debian/biobambam2/usr/bin/bamauxmerge2 libtool: install: /usr/bin/install -c bamreheader /<>/debian/biobambam2/usr/bin/bamreheader libtool: install: /usr/bin/install -c bamreplacechecksums /<>/debian/biobambam2/usr/bin/bamreplacechecksums libtool: install: /usr/bin/install -c bamfastcat /<>/debian/biobambam2/usr/bin/bamfastcat libtool: install: /usr/bin/install -c populaterefcache /<>/debian/biobambam2/usr/bin/populaterefcache libtool: install: /usr/bin/install -c bamfiltereofblocks /<>/debian/biobambam2/usr/bin/bamfiltereofblocks libtool: install: /usr/bin/install -c bamdepth /<>/debian/biobambam2/usr/bin/bamdepth libtool: install: /usr/bin/install -c bamdepthintersect /<>/debian/biobambam2/usr/bin/bamdepthintersect libtool: install: /usr/bin/install -c bamfilterk /<>/debian/biobambam2/usr/bin/bamfilterk libtool: install: /usr/bin/install -c bamfixpairinfo /<>/debian/biobambam2/usr/bin/bamfixpairinfo libtool: install: /usr/bin/install -c bamfeaturecount /<>/debian/biobambam2/usr/bin/bamfeaturecount /bin/mkdir -p '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/bamtofastq.1 programs/bamsort.1 programs/bammarkduplicates.1 programs/bammarkduplicatesopt.1 programs/bammaskflags.1 programs/bamrecompress.1 programs/bamadapterfind.1 programs/bamfilteraux.1 programs/bamauxsort.1 programs/bamadapterclip.1 programs/bamcollate2.1 programs/bam12auxmerge.1 programs/bam12split.1 programs/bam12strip.1 programs/bamreset.1 programs/bamrank.1 programs/bamclipreinsert.1 programs/bamzztoname.1 programs/bamindex.1 programs/bamfilterflags.1 programs/bamfilterrg.1 programs/bamdownsamplerandom.1 programs/bammarkduplicates2.1 programs/bamcat.1 programs/bammerge.1 programs/bamsplit.1 programs/bamsplitdiv.1 programs/bamchecksort.1 programs/fastqtobam.1 programs/bamfixmateinformation.1 programs/normalisefasta.1 programs/bamfilterheader.1 programs/bamfilterheader2.1 programs/bammdnm.1 programs/bamseqchksum.1 programs/bamvalidate.1 programs/bamflagsplit.1 programs/bamintervalcomment.1 programs/bamstreamingmarkduplicates.1 programs/bamsormadup.1 '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/fastaexplod.1 programs/bamrecalculatecigar.1 programs/bamfiltermc.1 programs/bamfillquery.1 programs/bamalignfrac.1 programs/bamauxmerge.1 programs/bamauxmerge2.1 programs/bambisect.1 programs/bamclipXT.1 programs/bamconsensus.1 programs/filtergtf.1 programs/bamfeaturecount.1 '/<>/debian/biobambam2/usr/share/man/man1' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'biobambam2' in '../biobambam2_2.0.164+ds-1_ppc64el.deb'. dpkg-deb: building package 'biobambam2-dbgsym' in '../biobambam2-dbgsym_2.0.164+ds-1_ppc64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../biobambam2_2.0.164+ds-1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-05-30T15:12:07Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ biobambam2_2.0.164+ds-1_ppc64el.changes: ---------------------------------------- Format: 1.8 Date: Thu, 28 May 2020 08:15:02 +0200 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Built-For-Profiles: cross nocheck Architecture: ppc64el Version: 2.0.164+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pranav Ballaney Description: biobambam2 - tools for early stage alignment file processing Changes: biobambam2 (2.0.164+ds-1) unstable; urgency=medium . * Team upload. . [ Pranav Ballaney ] * Add autopkgtest data * Add autopkgtests * Install manpages and docs . [ Andreas Tille ] * New upstream version * debhelper-compat 13 (routine-update) * Bump versioned Build-Depends: libmaus2-dev (>= 2.0.719) Checksums-Sha1: bb1c6db24cfa870f985061ff901fb4319e3ca8fc 196409440 biobambam2-dbgsym_2.0.164+ds-1_ppc64el.deb 20b5537d82791d446500980b4bb6f0869539de24 4723 biobambam2_2.0.164+ds-1_ppc64el.buildinfo 0b442dd905d7dae01a312f98a6decfd28324208f 7381708 biobambam2_2.0.164+ds-1_ppc64el.deb Checksums-Sha256: 2480c795c2f893ad5b01b983109cc830efdf1376a8c72ed3fcf261c50d532d3e 196409440 biobambam2-dbgsym_2.0.164+ds-1_ppc64el.deb 8269f85e3538aeb049b4325ca7cd5f7c67e4b0275b50ad7744d80a0680c83197 4723 biobambam2_2.0.164+ds-1_ppc64el.buildinfo 2785ac4d5a7903bcad51f4bde3df387d1f15edbbed33396190b31ca44f598a5c 7381708 biobambam2_2.0.164+ds-1_ppc64el.deb Files: e5b5dc597dedbdfe894060268e37d66e 196409440 debug optional biobambam2-dbgsym_2.0.164+ds-1_ppc64el.deb dbb27cac22dc50b569337b5693189790 4723 science optional biobambam2_2.0.164+ds-1_ppc64el.buildinfo cb171e91d796de7a17c9351daa0b4a41 7381708 science optional biobambam2_2.0.164+ds-1_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: biobambam2 Binary: biobambam2 Architecture: ppc64el Version: 2.0.164+ds-1 Checksums-Md5: e5b5dc597dedbdfe894060268e37d66e 196409440 biobambam2-dbgsym_2.0.164+ds-1_ppc64el.deb cb171e91d796de7a17c9351daa0b4a41 7381708 biobambam2_2.0.164+ds-1_ppc64el.deb Checksums-Sha1: bb1c6db24cfa870f985061ff901fb4319e3ca8fc 196409440 biobambam2-dbgsym_2.0.164+ds-1_ppc64el.deb 0b442dd905d7dae01a312f98a6decfd28324208f 7381708 biobambam2_2.0.164+ds-1_ppc64el.deb Checksums-Sha256: 2480c795c2f893ad5b01b983109cc830efdf1376a8c72ed3fcf261c50d532d3e 196409440 biobambam2-dbgsym_2.0.164+ds-1_ppc64el.deb 2785ac4d5a7903bcad51f4bde3df387d1f15edbbed33396190b31ca44f598a5c 7381708 biobambam2_2.0.164+ds-1_ppc64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 30 May 2020 15:12:04 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-8), binutils-common (= 2.34-8), binutils-x86-64-linux-gnu (= 2.34-8), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.35.2-2), build-essential (= 12.8), bzip2 (= 1.0.8-3), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-9 (= 9.3.0-13), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.1), debianutils (= 4.11), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.8.1-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.3.0-13), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10.1.0-3), gcc-9 (= 9.3.0-13), gcc-9-base (= 9.3.0-13), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-13), libatomic1 (= 10.1.0-3), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.34-8), libblkid1 (= 2.35.2-2), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-3), libc-bin (= 2.30-8), libc-dev-bin (= 2.30-8), libc6 (= 2.30-8), libc6-dev (= 2.30-8), libcap-ng0 (= 0.7.9-2.1+b2), libcc1-0 (= 10.1.0-3), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.34-8), libctf0 (= 2.34-8), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.252), libdebhelper-perl (= 13.1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.1-1), libgcc-9-dev (= 9.3.0-13), libgcc-s1 (= 10.1.0-3), libgcrypt20 (= 1.8.5-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.2-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10.1.0-3), libgpg-error0 (= 1.37-1), libicu63 (= 63.2-3), libisl22 (= 0.22.1-1), libitm1 (= 10.1.0-3), liblsan0 (= 10.1.0-3), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmaus2-2 (= 2.0.719+dfsg-1), libmaus2-dev (= 2.0.719+dfsg-1), libmount1 (= 2.35.2-2), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.2-1), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10.1.0-3), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.0-1+b3), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.35.2-2), libstdc++-9-dev (= 9.3.0-13), libstdc++6 (= 10.1.0-3), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.5-3), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10.1.0-3), libubsan1 (= 10.1.0-3), libuchardet0 (= 0.0.6-3), libudev1 (= 245.5-3), libunistring2 (= 0.9.10-2), libuuid1 (= 2.35.2-2), libxml2 (= 2.9.10+dfsg-5), linux-libc-dev (= 5.6.14-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-1), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.2-1), perl-base (= 5.30.2-1), perl-modules-5.30 (= 5.30.2-1), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.35.2-2), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1590646502" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ 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4356072 2020-05-28 06:15 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/biobambam2.debug drwxr-xr-x root/root 0 2020-05-28 06:15 ./usr/share/ drwxr-xr-x root/root 0 2020-05-28 06:15 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-05-28 06:15 ./usr/share/doc/biobambam2-dbgsym -> biobambam2 biobambam2_2.0.164+ds-1_ppc64el.deb ----------------------------------- new Debian package, version 2.0. size 7381708 bytes: control archive=4308 bytes. 1286 bytes, 25 lines control 8829 bytes, 139 lines md5sums Package: biobambam2 Version: 2.0.164+ds-1 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 58075 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libmaus2-2 (>= 2.0.719+dfsg), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://gitlab.com/german.tischler/biobambam2 Description: tools for early stage alignment file processing This package contains some tools for processing BAM files, including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name drwxr-xr-x root/root 0 2020-05-28 06:15 ./ drwxr-xr-x root/root 0 2020-05-28 06:15 ./usr/ drwxr-xr-x root/root 0 2020-05-28 06:15 ./usr/bin/ -rwxr-xr-x root/root 985800 2020-05-28 06:15 ./usr/bin/bam12auxmerge -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bam12split -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bam12strip -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bamadapterclip -rwxr-xr-x root/root 985800 2020-05-28 06:15 ./usr/bin/bamadapterfind -rwxr-xr-x root/root 855720 2020-05-28 06:15 ./usr/bin/bamalignfrac -rwxr-xr-x root/root 920264 2020-05-28 06:15 ./usr/bin/bamauxmerge -rwxr-xr-x root/root 657848 2020-05-28 06:15 ./usr/bin/bamauxmerge2 -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bamauxsort -rwxr-xr-x root/root 854728 2020-05-28 06:15 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root/root 920264 2020-05-28 06:15 ./usr/bin/bamfillquery -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bamfilteraux -rwxr-xr-x root/root 68016 2020-05-28 06:15 ./usr/bin/bamfiltereofblocks -rwxr-xr-x root/root 920264 2020-05-28 06:15 ./usr/bin/bamfilterflags -rwxr-xr-x root/root 920264 2020-05-28 06:15 ./usr/bin/bamfilterheader -rwxr-xr-x root/root 264624 2020-05-28 06:15 ./usr/bin/bamfilterheader2 -rwxr-xr-x root/root 854696 2020-05-28 06:15 ./usr/bin/bamfilterk -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bamfilterlength -rwxr-xr-x root/root 920264 2020-05-28 06:15 ./usr/bin/bamfiltermc -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bamfilternames -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bamfilterrefid -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bamfilterrg -rwxr-xr-x root/root 789160 2020-05-28 06:15 ./usr/bin/bamfixmateinformation -rwxr-xr-x root/root 920264 2020-05-28 06:15 ./usr/bin/bamfixpairinfo -rwxr-xr-x root/root 789160 2020-05-28 06:15 ./usr/bin/bamflagsplit -rwxr-xr-x root/root 330160 2020-05-28 06:15 ./usr/bin/bamindex -rwxr-xr-x root/root 1117896 2020-05-28 06:15 ./usr/bin/bamintervalcomment -rwxr-xr-x root/root 723624 2020-05-28 06:15 ./usr/bin/bamintervalcommenthist -rwxr-xr-x root/root 723624 2020-05-28 06:15 ./usr/bin/bammapdist -rwxr-xr-x root/root 1182376 2020-05-28 06:15 ./usr/bin/bammarkduplicates -rwxr-xr-x root/root 1247912 2020-05-28 06:15 ./usr/bin/bammarkduplicates2 -rwxr-xr-x root/root 1313448 2020-05-28 06:15 ./usr/bin/bammarkduplicatesopt -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bammaskflags -rwxr-xr-x root/root 526800 2020-05-28 06:15 ./usr/bin/bammdnm -rwxr-xr-x root/root 920264 2020-05-28 06:15 ./usr/bin/bammerge -rwxr-xr-x root/root 199088 2020-05-28 06:15 ./usr/bin/bamnumericalindex -rwxr-xr-x root/root 264632 2020-05-28 06:15 ./usr/bin/bamnumericalindexstats -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bamrank -rwxr-xr-x root/root 789160 2020-05-28 06:15 ./usr/bin/bamranksort -rwxr-xr-x root/root 920264 2020-05-28 06:15 ./usr/bin/bamrecalculatecigar -rwxr-xr-x root/root 395736 2020-05-28 06:15 ./usr/bin/bamrecompress -rwxr-xr-x root/root 789160 2020-05-28 06:15 ./usr/bin/bamrefextract -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bamrefinterval -rwxr-xr-x root/root 264624 2020-05-28 06:15 ./usr/bin/bamreheader -rwxr-xr-x root/root 264624 2020-05-28 06:15 ./usr/bin/bamreplacechecksums -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bamreset -rwxr-xr-x root/root 723624 2020-05-28 06:15 ./usr/bin/bamscrapcount -rwxr-xr-x root/root 789160 2020-05-28 06:15 ./usr/bin/bamseqchksum -rwxr-xr-x root/root 2165176 2020-05-28 06:15 ./usr/bin/bamsormadup -rwxr-xr-x root/root 1444552 2020-05-28 06:15 ./usr/bin/bamsort -rwxr-xr-x root/root 789160 2020-05-28 06:15 ./usr/bin/bamsplit -rwxr-xr-x root/root 723624 2020-05-28 06:15 ./usr/bin/bamsplitdiv -rwxr-xr-x root/root 1051336 2020-05-28 06:15 ./usr/bin/bamstreamingmarkduplicates -rwxr-xr-x root/root 1116888 2020-05-28 06:15 ./usr/bin/bamtofastq -rwxr-xr-x root/root 920264 2020-05-28 06:15 ./usr/bin/bamvalidate -rwxr-xr-x root/root 854728 2020-05-28 06:15 ./usr/bin/bamzztoname -rwxr-xr-x root/root 133552 2020-05-28 06:15 ./usr/bin/fastaexplod -rwxr-xr-x root/root 395704 2020-05-28 06:15 ./usr/bin/fastqtobam -rwxr-xr-x root/root 788920 2020-05-28 06:15 ./usr/bin/fastqtobam2 -rwxr-xr-x root/root 265648 2020-05-28 06:15 ./usr/bin/normalisefasta -rwxr-xr-x root/root 199088 2020-05-28 06:15 ./usr/bin/populaterefcache drwxr-xr-x root/root 0 2020-05-28 06:15 ./usr/share/ drwxr-xr-x root/root 0 2020-05-28 06:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-05-28 06:15 ./usr/share/doc/biobambam2/ lrwxrwxrwx root/root 0 2020-05-28 06:15 ./usr/share/doc/biobambam2/README.gz -> README.md.gz -rw-r--r-- root/root 2465 2020-05-07 11:50 ./usr/share/doc/biobambam2/README.md.gz -rw-r--r-- root/root 278 2020-05-28 06:15 ./usr/share/doc/biobambam2/README.test -rw-r--r-- root/root 623 2020-05-28 06:15 ./usr/share/doc/biobambam2/README.test-data -rw-r--r-- root/root 875 2020-05-28 06:15 ./usr/share/doc/biobambam2/changelog.Debian.gz -rw-r--r-- root/root 3781 2020-05-07 11:50 ./usr/share/doc/biobambam2/changelog.gz -rw-r--r-- root/root 3190 2020-05-28 06:15 ./usr/share/doc/biobambam2/copyright drwxr-xr-x root/root 0 2020-05-28 06:15 ./usr/share/doc/biobambam2/examples/ -rw-r--r-- root/root 623 2020-05-28 06:15 ./usr/share/doc/biobambam2/examples/README.test-data -rw-r--r-- root/root 659193 2020-05-28 06:15 ./usr/share/doc/biobambam2/examples/SRR11728627.bam -rw-r--r-- root/root 365817 2020-05-28 06:15 ./usr/share/doc/biobambam2/examples/SRR11728641.bam -rw-r--r-- root/root 1631 2020-05-28 06:15 ./usr/share/doc/biobambam2/run-unit-test drwxr-xr-x root/root 0 2020-05-28 06:15 ./usr/share/man/ drwxr-xr-x root/root 0 2020-05-28 06:15 ./usr/share/man/man1/ -rw-r--r-- root/root 1777 2020-05-28 06:15 ./usr/share/man/man1/bam12auxmerge.1.gz -rw-r--r-- root/root 1110 2020-05-28 06:15 ./usr/share/man/man1/bam12split.1.gz -rw-r--r-- root/root 1090 2020-05-28 06:15 ./usr/share/man/man1/bam12strip.1.gz -rw-r--r-- root/root 1220 2020-05-28 06:15 ./usr/share/man/man1/bamadapterclip.1.gz -rw-r--r-- root/root 2072 2020-05-28 06:15 ./usr/share/man/man1/bamadapterfind.1.gz -rw-r--r-- root/root 893 2020-05-28 06:15 ./usr/share/man/man1/bamalignfrac.1.gz -rw-r--r-- root/root 1579 2020-05-28 06:15 ./usr/share/man/man1/bamauxmerge.1.gz -rw-r--r-- root/root 1629 2020-05-28 06:15 ./usr/share/man/man1/bamauxmerge2.1.gz -rw-r--r-- root/root 1037 2020-05-28 06:15 ./usr/share/man/man1/bamauxsort.1.gz -rw-r--r-- root/root 823 2020-05-28 06:15 ./usr/share/man/man1/bambisect.1.gz -rw-r--r-- root/root 1296 2020-05-28 06:15 ./usr/share/man/man1/bamcat.1.gz -rw-r--r-- root/root 629 2020-05-28 06:15 ./usr/share/man/man1/bamchecksort.1.gz -rw-r--r-- root/root 942 2020-05-28 06:15 ./usr/share/man/man1/bamclipXT.1.gz -rw-r--r-- root/root 1089 2020-05-28 06:15 ./usr/share/man/man1/bamclipreinsert.1.gz -rw-r--r-- root/root 3442 2020-05-28 06:15 ./usr/share/man/man1/bamcollate2.1.gz -rw-r--r-- root/root 1099 2020-05-28 06:15 ./usr/share/man/man1/bamconsensus.1.gz -rw-r--r-- root/root 2755 2020-05-28 06:15 ./usr/share/man/man1/bamdownsamplerandom.1.gz -rw-r--r-- root/root 2278 2020-05-28 06:15 ./usr/share/man/man1/bamfeaturecount.1.gz -rw-r--r-- root/root 1477 2020-05-28 06:15 ./usr/share/man/man1/bamfillquery.1.gz -rw-r--r-- root/root 1151 2020-05-28 06:15 ./usr/share/man/man1/bamfilteraux.1.gz -rw-r--r-- root/root 1430 2020-05-28 06:15 ./usr/share/man/man1/bamfilterflags.1.gz -rw-r--r-- root/root 1196 2020-05-28 06:15 ./usr/share/man/man1/bamfilterheader.1.gz -rw-r--r-- root/root 1199 2020-05-28 06:15 ./usr/share/man/man1/bamfilterheader2.1.gz -rw-r--r-- root/root 1317 2020-05-28 06:15 ./usr/share/man/man1/bamfiltermc.1.gz -rw-r--r-- root/root 1093 2020-05-28 06:15 ./usr/share/man/man1/bamfilterrg.1.gz -rw-r--r-- root/root 1506 2020-05-28 06:15 ./usr/share/man/man1/bamfixmateinformation.1.gz -rw-r--r-- root/root 1625 2020-05-28 06:15 ./usr/share/man/man1/bamflagsplit.1.gz -rw-r--r-- root/root 568 2020-05-28 06:15 ./usr/share/man/man1/bamindex.1.gz -rw-r--r-- root/root 1955 2020-05-28 06:15 ./usr/share/man/man1/bamintervalcomment.1.gz -rw-r--r-- root/root 2558 2020-05-28 06:15 ./usr/share/man/man1/bammarkduplicates.1.gz -rw-r--r-- root/root 2679 2020-05-28 06:15 ./usr/share/man/man1/bammarkduplicates2.1.gz -rw-r--r-- root/root 2738 2020-05-28 06:15 ./usr/share/man/man1/bammarkduplicatesopt.1.gz -rw-r--r-- root/root 1492 2020-05-28 06:15 ./usr/share/man/man1/bammaskflags.1.gz -rw-r--r-- root/root 1625 2020-05-28 06:15 ./usr/share/man/man1/bammdnm.1.gz -rw-r--r-- root/root 1458 2020-05-28 06:15 ./usr/share/man/man1/bammerge.1.gz -rw-r--r-- root/root 1147 2020-05-28 06:15 ./usr/share/man/man1/bamrank.1.gz -rw-r--r-- root/root 1204 2020-05-28 06:15 ./usr/share/man/man1/bamranksort.1.gz -rw-r--r-- root/root 1507 2020-05-28 06:15 ./usr/share/man/man1/bamrecalculatecigar.1.gz -rw-r--r-- root/root 1065 2020-05-28 06:15 ./usr/share/man/man1/bamrecompress.1.gz -rw-r--r-- root/root 1733 2020-05-28 06:15 ./usr/share/man/man1/bamreset.1.gz -rw-r--r-- root/root 2194 2020-05-28 06:15 ./usr/share/man/man1/bamseqchksum.1.gz -rw-r--r-- root/root 1955 2020-05-28 06:15 ./usr/share/man/man1/bamsormadup.1.gz -rw-r--r-- root/root 3787 2020-05-28 06:15 ./usr/share/man/man1/bamsort.1.gz -rw-r--r-- root/root 951 2020-05-28 06:15 ./usr/share/man/man1/bamsplit.1.gz -rw-r--r-- root/root 982 2020-05-28 06:15 ./usr/share/man/man1/bamsplitdiv.1.gz -rw-r--r-- root/root 2097 2020-05-28 06:15 ./usr/share/man/man1/bamstreamingmarkduplicates.1.gz -rw-r--r-- root/root 1011 2020-05-28 06:15 ./usr/share/man/man1/bamtagconversion.1.gz -rw-r--r-- root/root 3269 2020-05-28 06:15 ./usr/share/man/man1/bamtofastq.1.gz -rw-r--r-- root/root 2033 2020-05-28 06:15 ./usr/share/man/man1/bamvalidate.1.gz -rw-r--r-- root/root 1088 2020-05-28 06:15 ./usr/share/man/man1/bamzztoname.1.gz -rw-r--r-- root/root 967 2020-05-28 06:15 ./usr/share/man/man1/fastaexplod.1.gz -rw-r--r-- root/root 2594 2020-05-28 06:15 ./usr/share/man/man1/fastqtobam.1.gz -rw-r--r-- root/root 671 2020-05-28 06:15 ./usr/share/man/man1/filtergtf.1.gz -rw-r--r-- root/root 1076 2020-05-28 06:15 ./usr/share/man/man1/normalisefasta.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [560 B] Get:5 copy:/<>/apt_archive ./ Packages [649 B] Fetched 2172 B in 0s (87.0 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-socket-ssl-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-socket-ssl-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:ppc64el t1utils 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 9339 kB of archives. After this operation, 26.5 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.1 [19.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.32.1-1 [755 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b4 [38.4 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1 [15.1 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.24-1 [16.2 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.19-1 [126 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b1 [26.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 5 [7360 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-3 [320 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.067-1 [212 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.23-1 [369 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.45-1 [84.4 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-5 [105 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.12-1 [12.9 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004002-1 [13.1 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004000-1 [59.4 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.112-1 [53.5 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.011+ds-1 [106 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.011+ds-1 [108 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010001-1 [338 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1 [35.6 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.77.1 [1291 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9339 kB in 0s (47.5 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21983 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.1_all.deb ... Unpacking netbase (6.1) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. 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Unpacking sbuild-build-depends-lintian-dummy:ppc64el (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36+b3) ... Setting up libunicode-utf8-perl (0.62-1+b1) ... Setting up libstruct-dumb-perl (0.12-1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libclone-perl (0.45-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b2) ... Setting up libcpanel-json-xs-perl (4.19-1) ... Setting up libssl1.1:amd64 (1.1.1g-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdevel-size-perl (0.83-1+b1) ... Setting up libsqlite3-0:amd64 (3.32.1-1) ... Setting up libfuture-perl (0.45-1) ... Setting up libyaml-libyaml-perl (0.82+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (5) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.3-7) ... Setting up libconfig-tiny-perl (2.24-1) ... Setting up libsereal-encoder-perl (4.011+ds-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libio-async-perl (0.75-1) ... Setting up patchutils (0.3.4-2+b1) ... Setting up libjson-maybexs-perl (1.004002-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up t1utils (1.41-4) ... Setting up liblinux-epoll-perl (0.017-1) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b2) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-1) ... Setting up libsub-name-perl (0.26-1) ... Setting up libpath-tiny-perl (0.112-1) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up netbase (6.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b4) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-4) ... Setting up libsereal-decoder-perl (4.011+ds-1) ... Setting up liburi-perl (1.76-2) ... Setting up libnet-ssleay-perl (1.88-3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libtype-tiny-perl (1.010001-1) ... Setting up libnet-dns-perl (1.23-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libio-async-loop-epoll-perl (0.20-1) ... Setting up libhtml-parser-perl (3.72-5) ... Setting up gpgconf (2.2.20-1) ... Setting up libio-socket-ssl-perl (2.067-1) ... Setting up gpg (2.2.20-1) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004000-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.77.1) ... Setting up sbuild-build-depends-lintian-dummy:ppc64el (0.invalid.0) ... Processing triggers for man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.30-8) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 5222484 Build-Time: 4885 Distribution: unstable Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 22 Job: biobambam2_2.0.164+ds-1 Lintian: pass Machine Architecture: amd64 Package: biobambam2 Package-Time: 4917 Source-Version: 2.0.164+ds-1 Space: 5222484 Status: successful Version: 2.0.164+ds-1 -------------------------------------------------------------------------------- Finished at 2020-05-30T15:12:07Z Build needed 01:21:57, 5222484k disk space