sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +==============================================================================+ | biobambam2 2.0.179+ds-1 (i386) Wed, 16 Jun 2021 04:53:21 +0000 | +==============================================================================+ Package: biobambam2 Version: 2.0.179+ds-1 Source Version: 2.0.179+ds-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-bfda1758-be58-41b5-9990-3dbdddfbd588' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-istlpv/resolver-MQ70ps' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [161 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main i386 Packages [8565 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9174 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8513 kB] Fetched 26.4 MB in 7s (3775 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'biobambam2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biobambam2.git Please use: git clone https://salsa.debian.org/med-team/biobambam2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1285 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main biobambam2 2.0.179+ds-1 (dsc) [2084 B] Get:2 http://mirror.einval.org/debian sid/main biobambam2 2.0.179+ds-1 (tar) [247 kB] Get:3 http://mirror.einval.org/debian sid/main biobambam2 2.0.179+ds-1 (diff) [1036 kB] Fetched 1285 kB in 0s (15.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/biobambam2-istlpv/biobambam2-2.0.179+ds' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-istlpv' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkg-config, libmaus2-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), pkg-config, libmaus2-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [417 B] Get:5 copy:/<>/apt_archive ./ Packages [505 B] Fetched 1879 B in 0s (44.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-10-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dpkg-cross dwz file g++-10-i686-linux-gnu g++-i686-linux-gnu gcc-10-base:i386 gcc-10-cross-base gcc-10-i686-linux-gnu gcc-10-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libasan6:i386 libasan6-i386-cross libassuan0 libassuan0:i386 libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev:i386 libgcc-10-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libglib2.0-0 libgmp10:i386 libgomp1:i386 libgomp1-i386-cross libgpg-error0:i386 libgpgme11:i386 libgssapi-krb5-2:i386 libicu67 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 libksba8 libldap-2.4-2 liblocale-gettext-perl libmagic-mgc libmagic1 libmaus2-2:i386 libmaus2-dev:i386 libncursesw6 libnettle8:i386 libnpth0 libnsl-dev:i386 libnsl2:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libreadline8 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssl1.1:i386 libstdc++-10-dev:i386 libstdc++-10-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db pinentry-curses pkg-config po-debconf readline-common sensible-utils ucf zlib1g:i386 zlib1g-dev:i386 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make dbus-user-session libpam-systemd pinentry-gnome3 tor binutils-multiarch g++-10-multilib-i686-linux-gnu gcc-10-doc gcc-10-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev parcimonie xloadimage scdaemon groff glibc-doc:i386 libc-l10n:i386 locales:i386 manpages-dev:i386 krb5-doc:i386 krb5-user:i386 libstdc++-10-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser pinentry-doc libmail-box-perl readline-doc Recommended packages: curl | wget | lynx libidn2-0:i386 libnss-nis:i386 libnss-nisplus:i386 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:i386 krb5-locales:i386 libldap-common libgpm2 libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-10-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dpkg-cross dwz file g++-10-i686-linux-gnu g++-i686-linux-gnu gcc-10-base:i386 gcc-10-cross-base gcc-10-i686-linux-gnu gcc-10-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libasan6:i386 libasan6-i386-cross libassuan0 libassuan0:i386 libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev:i386 libgcc-10-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libglib2.0-0 libgmp10:i386 libgomp1:i386 libgomp1-i386-cross libgpg-error0:i386 libgpgme11:i386 libgssapi-krb5-2:i386 libicu67 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 libksba8 libldap-2.4-2 liblocale-gettext-perl libmagic-mgc libmagic1 libmaus2-2:i386 libmaus2-dev:i386 libncursesw6 libnettle8:i386 libnpth0 libnsl-dev:i386 libnsl2:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libreadline8 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssl1.1:i386 libstdc++-10-dev:i386 libstdc++-10-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db pinentry-curses pkg-config po-debconf readline-common sbuild-build-depends-main-dummy:i386 sensible-utils ucf zlib1g:i386 zlib1g-dev:i386 0 upgraded, 130 newly installed, 0 to remove and 0 not upgraded. Need to get 217 MB of archives. After this operation, 966 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get:8 http://mirror.einval.org/debian sid/main i386 gcc-10-base i386 10.2.1-6 [201 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 readline-common all 8.1-2 [73.8 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libreadline8 arm64 8.1-2 [160 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.39-3 [69.1 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-4 [173 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.69-14 [313 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.3-2 [814 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-4 [510 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 gcc-10-i686-linux-gnu-base arm64 10.2.1-6cross1 [202 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 cpp-10-i686-linux-gnu arm64 10.2.1-6cross1 [46.1 MB] Get:25 http://mirror.einval.org/debian sid/main arm64 cpp-i686-linux-gnu arm64 4:10.2.1-1 [16.8 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu1 [31.5 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 binutils-i686-linux-gnu arm64 2.35.2-2 [1967 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 gcc-10-cross-base all 10.2.1-6cross1 [197 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libc6-i386-cross all 2.31-9cross4 [1502 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-i386-cross all 10.2.1-6cross1 [49.7 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libgomp1-i386-cross all 10.2.1-6cross1 [104 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libitm1-i386-cross all 10.2.1-6cross1 [28.3 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libatomic1-i386-cross all 10.2.1-6cross1 [9376 B] Get:34 http://mirror.einval.org/debian sid/main arm64 libasan6-i386-cross all 10.2.1-6cross1 [1923 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libstdc++6-i386-cross all 10.2.1-6cross1 [487 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libubsan1-i386-cross all 10.2.1-6cross1 [751 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libquadmath0-i386-cross all 10.2.1-6cross1 [228 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libgcc-10-dev-i386-cross all 10.2.1-6cross1 [2323 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 gcc-10-i686-linux-gnu arm64 10.2.1-6cross1 [52.2 MB] Get:40 http://mirror.einval.org/debian sid/main arm64 gcc-i686-linux-gnu arm64 4:10.2.1-1 [1452 B] Get:41 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-i386-cross all 5.10.13-1cross4 [1396 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libc6-dev-i386-cross all 2.31-9cross4 [2224 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libstdc++-10-dev-i386-cross all 10.2.1-6cross1 [1775 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 g++-10-i686-linux-gnu arm64 10.2.1-6cross1 [49.2 MB] Get:45 http://mirror.einval.org/debian sid/main arm64 g++-i686-linux-gnu arm64 4:10.2.1-1 [1176 B] Get:46 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-6 [8468 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0134+dfsg-2+b1 [326 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu1 [30.5 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu1 [41.6 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-i386 all 12.9 [6704 B] Get:62 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.6-15 [513 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.183-3 [164 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-4 [1261 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.3.4 [1049 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libassuan0 arm64 2.5.4-1 [48.7 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 gpgconf arm64 2.2.27-2 [540 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libksba8 arm64 1.5.0-3 [114 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libnpth0 arm64 1.6-3 [18.6 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 dirmngr arm64 2.2.27-2 [744 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 gnupg-l10n all 2.2.27-2 [1084 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 gnupg-utils arm64 2.2.27-2 [863 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libsqlite3-0 arm64 3.34.1-3 [750 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 gpg arm64 2.2.27-2 [883 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libncursesw6 arm64 6.2+20201114-2 [121 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 pinentry-curses arm64 1.1.0-4 [63.0 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 gpg-agent arm64 2.2.27-2 [651 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 gpg-wks-client arm64 2.2.27-2 [517 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 gpg-wks-server arm64 2.2.27-2 [510 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 gpgsm arm64 2.2.27-2 [627 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 gnupg all 2.2.27-2 [825 kB] Get:94 http://mirror.einval.org/debian sid/main i386 libgcc-s1 i386 10.2.1-6 [49.6 kB] Get:95 http://mirror.einval.org/debian sid/main i386 libcrypt1 i386 1:4.4.18-4 [97.2 kB] Get:96 http://mirror.einval.org/debian sid/main i386 libc6 i386 2.31-12 [2756 kB] Get:97 http://mirror.einval.org/debian sid/main i386 libasan6 i386 10.2.1-6 [1930 kB] Get:98 http://mirror.einval.org/debian sid/main i386 libgpg-error0 i386 1.38-2 [82.8 kB] Get:99 http://mirror.einval.org/debian sid/main i386 libassuan0 i386 2.5.4-1 [53.2 kB] Get:100 http://mirror.einval.org/debian sid/main i386 libatomic1 i386 10.2.1-6 [9508 B] Get:101 http://mirror.einval.org/debian sid/main i386 linux-libc-dev i386 5.10.40-1 [1348 kB] Get:102 http://mirror.einval.org/debian sid/main i386 libcrypt-dev i386 1:4.4.18-4 [116 kB] Get:103 http://mirror.einval.org/debian sid/main i386 libcom-err2 i386 1.46.2-2 [74.6 kB] Get:104 http://mirror.einval.org/debian sid/main i386 libkrb5support0 i386 1.18.3-5 [68.4 kB] Get:105 http://mirror.einval.org/debian sid/main i386 libk5crypto3 i386 1.18.3-5 [117 kB] Get:106 http://mirror.einval.org/debian sid/main i386 libkeyutils1 i386 1.6.1-2 [15.9 kB] Get:107 http://mirror.einval.org/debian sid/main i386 libssl1.1 i386 1.1.1k-1 [1550 kB] Get:108 http://mirror.einval.org/debian sid/main i386 libkrb5-3 i386 1.18.3-5 [390 kB] Get:109 http://mirror.einval.org/debian sid/main i386 libgssapi-krb5-2 i386 1.18.3-5 [176 kB] Get:110 http://mirror.einval.org/debian sid/main i386 libtirpc3 i386 1.3.1-1 [90.8 kB] Get:111 http://mirror.einval.org/debian sid/main i386 libnsl2 i386 1.3.0-2 [42.2 kB] Get:112 http://mirror.einval.org/debian sid/main i386 libtirpc-dev i386 1.3.1-1 [201 kB] Get:113 http://mirror.einval.org/debian sid/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB] Get:114 http://mirror.einval.org/debian sid/main i386 libc6-dev i386 2.31-12 [3776 kB] Get:115 http://mirror.einval.org/debian sid/main i386 libgomp1 i386 10.2.1-6 [106 kB] Get:116 http://mirror.einval.org/debian sid/main i386 libitm1 i386 10.2.1-6 [28.6 kB] Get:117 http://mirror.einval.org/debian sid/main i386 libstdc++6 i386 10.2.1-6 [527 kB] Get:118 http://mirror.einval.org/debian sid/main i386 libubsan1 i386 10.2.1-6 [752 kB] Get:119 http://mirror.einval.org/debian sid/main i386 libquadmath0 i386 10.2.1-6 [228 kB] Get:120 http://mirror.einval.org/debian sid/main i386 libgcc-10-dev i386 10.2.1-6 [2324 kB] Get:121 http://mirror.einval.org/debian sid/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get:122 http://mirror.einval.org/debian sid/main i386 libgmp10 i386 2:6.2.1+dfsg-1 [574 kB] Get:123 http://mirror.einval.org/debian sid/main i386 libgpgme11 i386 1.14.0-1+b2 [288 kB] Get:124 http://mirror.einval.org/debian sid/main i386 libnettle8 i386 3.7.3-1 [286 kB] Get:125 http://mirror.einval.org/debian sid/main i386 zlib1g i386 1:1.2.11.dfsg-2 [93.1 kB] Get:126 http://mirror.einval.org/debian sid/main i386 libmaus2-2 i386 2.0.768+dfsg-2 [1816 kB] Get:127 http://mirror.einval.org/debian sid/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get:128 http://mirror.einval.org/debian sid/main i386 libmaus2-dev i386 2.0.768+dfsg-2 [3193 kB] Get:129 http://mirror.einval.org/debian sid/main i386 libstdc++-10-dev i386 10.2.1-6 [1786 kB] Get:130 http://mirror.einval.org/debian sid/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 217 MB in 3s (83.6 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12271 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../001-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../003-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../005-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... 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Preparing to unpack .../128-pkg-config_0.29.2-1_arm64.deb ... Unpacking pkg-config (0.29.2-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:i386. Preparing to unpack .../129-sbuild-build-depends-main-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libksba8:arm64 (1.5.0-3) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.66.8-1) ... No schema files found: doing nothing. Setting up binutils-i686-linux-gnu (2.35.2-2) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libsqlite3-0:arm64 (3.34.1-3) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up linux-libc-dev:i386 (5.10.40-1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4) ... Setting up libnpth0:arm64 (1.6-3) ... Setting up file (1:5.39-3) ... Setting up libassuan0:arm64 (2.5.4-1) ... Setting up libyaml-perl (1.30-1) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up gcc-10-base:i386 (10.2.1-6) ... Setting up linux-libc-dev-i386-cross (5.10.13-1cross4) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu1) ... Setting up gnupg-l10n (2.2.27-2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up pkg-config (0.29.2-1) ... Setting up libncursesw6:arm64 (6.2+20201114-2) ... Setting up gcc-10-cross-base (10.2.1-6cross1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libc6-i386-cross (2.31-9cross4) ... Setting up libsub-override-perl (0.09-2) ... Setting up gcc-10-i686-linux-gnu-base:arm64 (10.2.1-6cross1) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libquadmath0-i386-cross (10.2.1-6cross1) ... Setting up libelf1:arm64 (0.183-3) ... Setting up readline-common (8.1-2) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up pinentry-curses (1.1.0-4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libatomic1-i386-cross (10.2.1-6cross1) ... Setting up libreadline8:arm64 (8.1-2) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libgomp1-i386-cross (10.2.1-6cross1) ... Setting up libc6-dev-i386-cross (2.31-9cross4) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgcc-s1-i386-cross (10.2.1-6cross1) ... Setting up libasan6-i386-cross (10.2.1-6cross1) ... Setting up cpp-10-i686-linux-gnu (10.2.1-6cross1) ... Setting up libitm1-i386-cross (10.2.1-6cross1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up gpgconf (2.2.27-2) ... Setting up cpp-i686-linux-gnu (4:10.2.1-1) ... Setting up gpg (2.2.27-2) ... Setting up gnupg-utils (2.2.27-2) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gpg-agent (2.2.27-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up gpgsm (2.2.27-2) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++6-i386-cross (10.2.1-6cross1) ... Setting up dh-autoreconf (20) ... Setting up dirmngr (2.2.27-2) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gpg-wks-server (2.2.27-2) ... Setting up gpg-wks-client (2.2.27-2) ... Setting up debhelper (13.3.4) ... Setting up libubsan1-i386-cross (10.2.1-6cross1) ... Setting up libgcc-10-dev-i386-cross (10.2.1-6cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gnupg (2.2.27-2) ... Setting up libstdc++-10-dev-i386-cross (10.2.1-6cross1) ... Setting up gcc-10-i686-linux-gnu (10.2.1-6cross1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up gcc-i686-linux-gnu (4:10.2.1-1) ... Setting up g++-10-i686-linux-gnu (10.2.1-6cross1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu1) ... Setting up g++-i686-linux-gnu (4:10.2.1-1) ... Setting up dpkg-cross (2.6.18+nmu1) ... Setting up crossbuild-essential-i386 (12.9) ... Setting up libgcc-s1:i386 (10.2.1-6) ... Setting up libcrypt1:i386 (1:4.4.18-4) ... Setting up libc6:i386 (2.31-12) ... Setting up libcrypt-dev:i386 (1:4.4.18-4) ... Setting up libstdc++6:i386 (10.2.1-6) ... Setting up libitm1:i386 (10.2.1-6) ... Setting up libkeyutils1:i386 (1.6.1-2) ... Setting up libgpg-error0:i386 (1.38-2) ... Setting up libssl1.1:i386 (1.1.1k-1) ... Setting up zlib1g:i386 (1:1.2.11.dfsg-2) ... Setting up libcom-err2:i386 (1.46.2-2) ... Setting up libassuan0:i386 (2.5.4-1) ... Setting up libgomp1:i386 (10.2.1-6) ... Setting up libgpgme11:i386 (1.14.0-1+b2) ... Setting up libasan6:i386 (10.2.1-6) ... Setting up libkrb5support0:i386 (1.18.3-5) ... Setting up libnettle8:i386 (3.7.3-1) ... Setting up libgmp10:i386 (2:6.2.1+dfsg-1) ... Setting up libquadmath0:i386 (10.2.1-6) ... Setting up libatomic1:i386 (10.2.1-6) ... Setting up libk5crypto3:i386 (1.18.3-5) ... Setting up libubsan1:i386 (10.2.1-6) ... Setting up libkrb5-3:i386 (1.18.3-5) ... Setting up libmaus2-2:i386 (2.0.768+dfsg-2) ... Setting up libgcc-10-dev:i386 (10.2.1-6) ... Setting up libgssapi-krb5-2:i386 (1.18.3-5) ... Setting up libtirpc3:i386 (1.3.1-1) ... Setting up libtirpc-dev:i386 (1.3.1-1) ... Setting up libnsl2:i386 (1.3.0-2) ... Setting up libnsl-dev:i386 (1.3.0-2) ... Setting up libc6-dev:i386 (2.31-12) ... Setting up libstdc++-10-dev:i386 (10.2.1-6) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up libmaus2-dev:i386 (2.0.768+dfsg-2) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.31-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.35.2-2 dpkg-dev_1.20.9 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-12 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-i386-cross_10.2.1-6cross1 libstdc++6_10.2.1-6 libstdc++6-i386-cross_10.2.1-6cross1 linux-libc-dev_5.10.40-1 Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1 base-passwd_3.5.50 bash_5.1-3 binutils_2.35.2-2 binutils-aarch64-linux-gnu_2.35.2-2 binutils-common_2.35.2-2 binutils-i686-linux-gnu_2.35.2-2 bsdextrautils_2.36.1-7 bsdutils_1:2.36.1-7 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1 cpp-10_10.2.1-6 cpp-10-i686-linux-gnu_10.2.1-6cross1 cpp-i686-linux-gnu_4:10.2.1-1 cross-config_2.6.18+nmu1 crossbuild-essential-i386_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.3.4 debian-archive-keyring_2021.1.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9 dpkg-cross_2.6.18+nmu1 dpkg-dev_1.20.9 dwz_0.14-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.2.1-6 g++-10-i686-linux-gnu_10.2.1-6cross1 g++-i686-linux-gnu_4:10.2.1-1 gcc_4:10.2.1-1 gcc-10_10.2.1-6 gcc-10-base_10.2.1-6 gcc-10-cross-base_10.2.1-6cross1 gcc-10-i686-linux-gnu_10.2.1-6cross1 gcc-10-i686-linux-gnu-base_10.2.1-6cross1 gcc-i686-linux-gnu_4:10.2.1-1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6 libasan6-i386-cross_10.2.1-6cross1 libassuan0_2.5.4-1 libatomic1_10.2.1-6 libatomic1-i386-cross_10.2.1-6cross1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2 libblkid1_2.36.1-7 libbz2-1.0_1.0.8-4 libc-bin_2.31-12 libc-dev-bin_2.31-12 libc6_2.31-12 libc6-dev_2.31-12 libc6-dev-i386-cross_2.31-9cross4 libc6-i386-cross_2.31-9cross4 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6 libcom-err2_1.46.2-2 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2 libctf0_2.35.2-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.259 libdebhelper-perl_13.3.4 libdebian-dpkgcross-perl_2.6.18+nmu1 libdpkg-perl_1.20.9 libelf1_0.183-3 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.1-6 libgcc-10-dev-i386-cross_10.2.1-6cross1 libgcc-s1_10.2.1-6 libgcc-s1-i386-cross_10.2.1-6cross1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libglib2.0-0_2.66.8-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6 libgomp1-i386-cross_10.2.1-6cross1 libgpg-error0_1.38-2 libgpgme11_1.14.0-1+b2 libgssapi-krb5-2_1.18.3-5 libhogweed6_3.7.3-1 libicu67_67.1-6 libidn2-0_2.3.0-5 libio-string-perl_1.08-3.1 libisl23_0.23-1 libitm1_10.2.1-6 libitm1-i386-cross_10.2.1-6cross1 libk5crypto3_1.18.3-5 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-5 libkrb5support0_1.18.3-5 libksba8_1.5.0-3 libldap-2.4-2_2.4.57+dfsg-3 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.1-6 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmaus2-2_2.0.768+dfsg-2 libmaus2-dev_2.0.768+dfsg-2 libmount1_2.36.1-7 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-7 libpam-modules-bin_1.4.0-7 libpam-runtime_1.4.0-7 libpam0g_1.4.0-7 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4 libpipeline1_1.5.3-1 libquadmath0_10.2.1-6 libquadmath0-i386-cross_10.2.1-6cross1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-7 libsqlite3-0_3.34.1-3 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-i386-cross_10.2.1-6cross1 libstdc++6_10.2.1-6 libstdc++6-i386-cross_10.2.1-6cross1 libsub-override-perl_0.09-2 libsystemd0_247.3-5 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libtsan0_10.2.1-6 libubsan1_10.2.1-6 libubsan1-i386-cross_10.2.1-6cross1 libuchardet0_0.0.7-1 libudev1_247.3-5 libunistring2_0.9.10-4 libuuid1_2.36.1-7 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6.7 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.40-1 linux-libc-dev-i386-cross_5.10.13-1cross4 login_1:4.8.1-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-7 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4 perl-base_5.32.1-4 perl-modules-5.32_5.32.1-4 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 readline-common_8.1-2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 util-linux_2.36.1-7 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biobambam2 Binary: biobambam2 Architecture: any Version: 2.0.179+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://gitlab.com/german.tischler/biobambam2 Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/biobambam2 Vcs-Git: https://salsa.debian.org/med-team/biobambam2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), pkg-config, libmaus2-dev Package-List: biobambam2 deb science optional arch=any Checksums-Sha1: 1def85c3a76e771f8f23f3da55828ed03e460827 246820 biobambam2_2.0.179+ds.orig.tar.xz 309d312d64f56177e02d039992a2ea576c12ec48 1035672 biobambam2_2.0.179+ds-1.debian.tar.xz Checksums-Sha256: b549a6f8b8638f4be2d3f08c53502d64f514a9246e47c28da416c456e4523a9a 246820 biobambam2_2.0.179+ds.orig.tar.xz 23507be883fa2a47b75ebbaba3469cad0f8872826e61aa50a0f459f553237ba3 1035672 biobambam2_2.0.179+ds-1.debian.tar.xz Files: f7a378fab3a79228233e51c58b912663 246820 biobambam2_2.0.179+ds.orig.tar.xz fa2c01935227cb4865d7063440428776 1035672 biobambam2_2.0.179+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAl/xmj4ACgkQeTz2fo8N Edp0rA/7BrdrX8kFdQYwx9geFGz6VwJsST75KZWjEjQIDzX7FCtISDUS+txq8Bix cq3zZz24yCn8bBQU6EMtpnqqGO2KaeDmSg4bUBE4SSWO/QUkQBNTob9x0CKA63OE 2QJc/kFJjYD1GSDC5jy1nWrYwFJ03Bax8mP29k948BBOPbuGDyoHCk6/hOtQ1q/z 9fgZxnI8BfZaC/dxSTN9p3CUVGQcdYzCihFCvX2dKK9n+PwF8kv9lQaiM6ioZysH I9YSS8VCtZ18WNJRnWFgnbl2Io1EdHlNYHepO37mGZ8+M/qRqTbAn7aJyY+xNpqg MsaeDPRlUfKEFbeeDvpjs8j/uvuJJOvgqYJiit3RsDHOaY30CXwJl8FpecQI0hAj 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manuals.patch dpkg-source: info: applying spelling-error-in-binary.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-bfda1758-be58-41b5-9990-3dbdddfbd588 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package biobambam2 dpkg-buildpackage: info: source version 2.0.179+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f config.log make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:3: installing './compile' configure.ac:2: installing './config.guess' configure.ac:2: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.i386 checking build system type... aarch64-unknown-linux-gnu checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking how to print strings... printf checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to accept ISO C89... none needed checking whether i686-linux-gnu-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by i686-linux-gnu-gcc... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/i686-linux-gnu-nm -B checking the name lister (/usr/bin/i686-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/i686-linux-gnu/bin/ld option to reload object files... -r checking for i686-linux-gnu-objdump... i686-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for i686-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i686-linux-gnu-ar... i686-linux-gnu-ar checking for archiver @FILE support... @ checking for i686-linux-gnu-strip... i686-linux-gnu-strip checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/i686-linux-gnu-nm -B output from i686-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for i686-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... i686-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if i686-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-gcc static flag -static works... yes checking if i686-linux-gnu-gcc supports -c -o file.o... yes checking if i686-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-gcc linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for i686-linux-gnu-strip... (cached) i686-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of i686-linux-gnu-gcc... none checking whether we are cross compiling... yes checking for i686-linux-gnu-gcc... (cached) i686-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether i686-linux-gnu-gcc accepts -g... (cached) yes checking for i686-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether i686-linux-gnu-gcc understands -c and -o together... (cached) yes checking for i686-linux-gnu-g++... i686-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether i686-linux-gnu-g++ accepts -g... yes checking how to run the C++ preprocessor... i686-linux-gnu-g++ -E checking for ld used by i686-linux-gnu-g++... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-g++ static flag -static works... yes checking if i686-linux-gnu-g++ supports -c -o file.o... yes checking if i686-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of i686-linux-gnu-g++... none checking whether the C++ compiler supports the -fsanitize=address flag... yes configure: Adding optimisation options to C compiler i686-linux-gnu-gcc flags, full list now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security configure: Adding optimisation options to C++ compiler i686-linux-gnu-g++ flags, full list now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security checking for i686-linux-gnu-pkg-config... /usr/bin/i686-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for ANSI C header files... (cached) yes checking for libmaus2 >= 2.0.767... yes checking whether we can compile a program using libmaus2... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE... yes checking whether libmaus2 has support for io_lib... no checking whether libmaus2 has support for iRODS... no checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for xerces-c >= 3.1.1... no configure: Using flags -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C compiler i686-linux-gnu-gcc configure: Using flags -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C++ compiler i686-linux-gnu-g++ checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/biobambam2/BamBamConfig.hpp config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtofastq-bamtofastq.o `test -f 'programs/bamtofastq.cpp' || echo './'`programs/bamtofastq.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtofastq-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -fopenmp -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicates-bammarkduplicates.o `test -f 'programs/bammarkduplicates.cpp' || echo './'`programs/bammarkduplicates.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -fopenmp -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsort-bamsort.o `test -f 'programs/bamsort.cpp' || echo './'`programs/bamsort.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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biobambam2/bamclipreinsert-Licensing.o biobambam2/bamclipreinsert-ClipReinsert.o -fopenmp -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamclipXT-bamclipXT.o `test -f 'programs/bamclipXT.cpp' || echo './'`programs/bamclipXT.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamclipXT-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. 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biobambam2/bamscrapcount-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamscrapcount programs/bamscrapcount-bamscrapcount.o biobambam2/bamscrapcount-Licensing.o -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamscrapcount programs/bamscrapcount-bamscrapcount.o biobambam2/bamscrapcount-Licensing.o -fopenmp -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace 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biobambam2/bamfilterrefid-Licensing.o -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterrefid programs/bamfilterrefid-bamfilterrefid.o biobambam2/bamfilterrefid-Licensing.o -fopenmp -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfillquery-bamfillquery.o `test -f 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-fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamreheader programs/bamreheader-bamreheader.o biobambam2/bamreheader-Licensing.o biobambam2/bamreheader-ReadHeader.o biobambam2/bamreheader-RunEOFFilter.o biobambam2/bamreheader-UpdateNumericalIndex.o -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong 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-Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamreplacechecksums programs/bamreplacechecksums-bamreplacechecksums.o biobambam2/bamreplacechecksums-Licensing.o biobambam2/bamreplacechecksums-ReadHeader.o biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamreplacechecksums programs/bamreplacechecksums-bamreplacechecksums.o biobambam2/bamreplacechecksums-Licensing.o biobambam2/bamreplacechecksums-ReadHeader.o biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -fopenmp -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastcat-bamfastcat.o `test -f 'programs/bamfastcat.cpp' || echo './'`programs/bamfastcat.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamfastcat programs/bamfastcat-bamfastcat.o biobambam2/bamfastcat-Licensing.o 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-Wl,-z -Wl,now -o bamfixmatecoordinatesnamesorted programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o -fopenmp -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtoname-bamtoname.o `test -f 'programs/bamtoname.cpp' || echo './'`programs/bamtoname.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtoname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp 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-Werror=format-security -c -o biobambam2/bamcountflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamcountflags programs/bamcountflags-bamcountflags.o biobambam2/bamcountflags-Licensing.o -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamcountflags programs/bamcountflags-bamcountflags.o biobambam2/bamcountflags-Licensing.o -fopenmp -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcffilterfilterflags-vcffilterfilterflags.o `test -f 'programs/vcffilterfilterflags.cpp' || echo './'`programs/vcffilterfilterflags.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcffilterfilterflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o vcffilterfilterflags programs/vcffilterfilterflags-vcffilterfilterflags.o biobambam2/vcffilterfilterflags-Licensing.o -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcffilterfilterflags programs/vcffilterfilterflags-vcffilterfilterflags.o biobambam2/vcffilterfilterflags-Licensing.o -fopenmp -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfreplacecontigsmap-vcfreplacecontigsmap.o `test -f 'programs/vcfreplacecontigsmap.cpp' || echo './'`programs/vcfreplacecontigsmap.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfreplacecontigsmap-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o vcfreplacecontigsmap programs/vcfreplacecontigsmap-vcfreplacecontigsmap.o biobambam2/vcfreplacecontigsmap-Licensing.o -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcfreplacecontigsmap programs/vcfreplacecontigsmap-vcfreplacecontigsmap.o biobambam2/vcfreplacecontigsmap-Licensing.o -fopenmp -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastaselectreg-fastaselectreg.o `test -f 'programs/fastaselectreg.cpp' || echo './'`programs/fastaselectreg.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastaselectreg-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o fastaselectreg programs/fastaselectreg-fastaselectreg.o biobambam2/fastaselectreg-Licensing.o -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastaselectreg programs/fastaselectreg-fastaselectreg.o biobambam2/fastaselectreg-Licensing.o -fopenmp -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamaddne-bamaddne.o `test -f 'programs/bamaddne.cpp' || echo './'`programs/bamaddne.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamaddne-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamaddne programs/bamaddne-bamaddne.o biobambam2/bamaddne-Licensing.o -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamaddne programs/bamaddne-bamaddne.o biobambam2/bamaddne-Licensing.o -fopenmp -L/usr/lib/i386-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/biobambam2-2.0.179\+ds/debian/biobambam2 AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/biobambam2/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c bamtofastq bammarkduplicates bamsort bammaskflags bamrecompress bamadapterfind bamfilteraux bamauxsort bamadapterclip bamcollate2 bam12auxmerge bam12split bam12strip bamreset bamrank bamclipreinsert bamclipXT bamzztoname bamindex bamfilterflags bamfilterrg bamdownsamplerandom bammarkduplicates2 bamcat bammerge bamsplit bamfastsplit bamsplitdiv bamchecksort fastqtobam bamfixmateinformation bamseqchksum normalisefasta bamfilterheader bamfilterheader2 bammdnm bammapdist bamvalidate bamflagsplit bamintervalcomment bamintervalcommenthist bamstreamingmarkduplicates bamalignfrac bamfilternames bamsormadup bamexplode bamexploderef bamfastexploderef bamfastnumextract bamranksort fastaexplod bamrecalculatecigar bamfiltermc bamnumericalindex bamnumericalindexstats bammarkduplicatesopt bamfilterlength bamauxmerge bamrefinterval bamscrapcount bamfilterrefid bamfillquery bamrefextract fastqtobam2 bamauxmerge2 bamreheader bamreplacechecksums bamfastcat populaterefcache bamfiltereofblocks bamdepth bamdepthintersect bamfilterk bamfixpairinfo bamdifference bamfeaturecount '/<>/debian/biobambam2/usr/bin' libtool: install: /usr/bin/install -c bamtofastq /<>/debian/biobambam2/usr/bin/bamtofastq libtool: install: /usr/bin/install -c bammarkduplicates /<>/debian/biobambam2/usr/bin/bammarkduplicates libtool: install: /usr/bin/install -c bamsort /<>/debian/biobambam2/usr/bin/bamsort libtool: install: /usr/bin/install -c bammaskflags /<>/debian/biobambam2/usr/bin/bammaskflags libtool: install: /usr/bin/install -c bamrecompress /<>/debian/biobambam2/usr/bin/bamrecompress libtool: install: /usr/bin/install -c bamadapterfind /<>/debian/biobambam2/usr/bin/bamadapterfind libtool: install: /usr/bin/install -c bamfilteraux /<>/debian/biobambam2/usr/bin/bamfilteraux libtool: install: /usr/bin/install -c bamauxsort /<>/debian/biobambam2/usr/bin/bamauxsort libtool: install: /usr/bin/install -c bamadapterclip /<>/debian/biobambam2/usr/bin/bamadapterclip libtool: install: /usr/bin/install -c bamcollate2 /<>/debian/biobambam2/usr/bin/bamcollate2 libtool: install: /usr/bin/install -c bam12auxmerge /<>/debian/biobambam2/usr/bin/bam12auxmerge libtool: install: /usr/bin/install -c bam12split /<>/debian/biobambam2/usr/bin/bam12split libtool: install: /usr/bin/install -c bam12strip /<>/debian/biobambam2/usr/bin/bam12strip libtool: install: /usr/bin/install -c bamreset /<>/debian/biobambam2/usr/bin/bamreset libtool: install: /usr/bin/install -c bamrank /<>/debian/biobambam2/usr/bin/bamrank libtool: install: /usr/bin/install -c bamclipreinsert /<>/debian/biobambam2/usr/bin/bamclipreinsert libtool: install: /usr/bin/install -c bamclipXT /<>/debian/biobambam2/usr/bin/bamclipXT libtool: install: /usr/bin/install -c bamzztoname /<>/debian/biobambam2/usr/bin/bamzztoname libtool: install: /usr/bin/install -c bamindex /<>/debian/biobambam2/usr/bin/bamindex libtool: install: /usr/bin/install -c bamfilterflags /<>/debian/biobambam2/usr/bin/bamfilterflags libtool: install: /usr/bin/install -c bamfilterrg /<>/debian/biobambam2/usr/bin/bamfilterrg libtool: install: /usr/bin/install -c bamdownsamplerandom /<>/debian/biobambam2/usr/bin/bamdownsamplerandom libtool: install: /usr/bin/install -c bammarkduplicates2 /<>/debian/biobambam2/usr/bin/bammarkduplicates2 libtool: install: /usr/bin/install -c bamcat /<>/debian/biobambam2/usr/bin/bamcat libtool: install: /usr/bin/install -c bammerge /<>/debian/biobambam2/usr/bin/bammerge libtool: install: /usr/bin/install -c bamsplit /<>/debian/biobambam2/usr/bin/bamsplit libtool: install: /usr/bin/install -c bamfastsplit /<>/debian/biobambam2/usr/bin/bamfastsplit libtool: install: /usr/bin/install -c bamsplitdiv /<>/debian/biobambam2/usr/bin/bamsplitdiv libtool: install: /usr/bin/install -c bamchecksort /<>/debian/biobambam2/usr/bin/bamchecksort libtool: install: /usr/bin/install -c fastqtobam /<>/debian/biobambam2/usr/bin/fastqtobam libtool: install: /usr/bin/install -c bamfixmateinformation /<>/debian/biobambam2/usr/bin/bamfixmateinformation libtool: install: /usr/bin/install -c bamseqchksum /<>/debian/biobambam2/usr/bin/bamseqchksum libtool: install: /usr/bin/install -c normalisefasta /<>/debian/biobambam2/usr/bin/normalisefasta libtool: install: /usr/bin/install -c bamfilterheader /<>/debian/biobambam2/usr/bin/bamfilterheader libtool: install: /usr/bin/install -c bamfilterheader2 /<>/debian/biobambam2/usr/bin/bamfilterheader2 libtool: install: /usr/bin/install -c bammdnm /<>/debian/biobambam2/usr/bin/bammdnm libtool: install: /usr/bin/install -c bammapdist /<>/debian/biobambam2/usr/bin/bammapdist libtool: install: /usr/bin/install -c bamvalidate /<>/debian/biobambam2/usr/bin/bamvalidate libtool: install: /usr/bin/install -c bamflagsplit /<>/debian/biobambam2/usr/bin/bamflagsplit libtool: install: /usr/bin/install -c bamintervalcomment /<>/debian/biobambam2/usr/bin/bamintervalcomment libtool: install: /usr/bin/install -c bamintervalcommenthist /<>/debian/biobambam2/usr/bin/bamintervalcommenthist libtool: install: /usr/bin/install -c bamstreamingmarkduplicates /<>/debian/biobambam2/usr/bin/bamstreamingmarkduplicates libtool: install: /usr/bin/install -c bamalignfrac /<>/debian/biobambam2/usr/bin/bamalignfrac libtool: install: /usr/bin/install -c bamfilternames /<>/debian/biobambam2/usr/bin/bamfilternames libtool: install: /usr/bin/install -c bamsormadup /<>/debian/biobambam2/usr/bin/bamsormadup libtool: install: /usr/bin/install -c bamexplode /<>/debian/biobambam2/usr/bin/bamexplode libtool: install: /usr/bin/install -c bamexploderef /<>/debian/biobambam2/usr/bin/bamexploderef libtool: install: /usr/bin/install -c bamfastexploderef /<>/debian/biobambam2/usr/bin/bamfastexploderef libtool: install: /usr/bin/install -c bamfastnumextract /<>/debian/biobambam2/usr/bin/bamfastnumextract libtool: install: /usr/bin/install -c bamranksort /<>/debian/biobambam2/usr/bin/bamranksort libtool: install: /usr/bin/install -c fastaexplod /<>/debian/biobambam2/usr/bin/fastaexplod libtool: install: /usr/bin/install -c bamrecalculatecigar /<>/debian/biobambam2/usr/bin/bamrecalculatecigar libtool: install: /usr/bin/install -c bamfiltermc /<>/debian/biobambam2/usr/bin/bamfiltermc libtool: install: /usr/bin/install -c bamnumericalindex /<>/debian/biobambam2/usr/bin/bamnumericalindex libtool: install: /usr/bin/install -c bamnumericalindexstats /<>/debian/biobambam2/usr/bin/bamnumericalindexstats libtool: install: /usr/bin/install -c bammarkduplicatesopt /<>/debian/biobambam2/usr/bin/bammarkduplicatesopt libtool: install: /usr/bin/install -c bamfilterlength /<>/debian/biobambam2/usr/bin/bamfilterlength libtool: install: /usr/bin/install -c bamauxmerge /<>/debian/biobambam2/usr/bin/bamauxmerge libtool: install: /usr/bin/install -c bamrefinterval /<>/debian/biobambam2/usr/bin/bamrefinterval libtool: install: /usr/bin/install -c bamscrapcount /<>/debian/biobambam2/usr/bin/bamscrapcount libtool: install: /usr/bin/install -c bamfilterrefid /<>/debian/biobambam2/usr/bin/bamfilterrefid libtool: install: /usr/bin/install -c bamfillquery /<>/debian/biobambam2/usr/bin/bamfillquery libtool: install: /usr/bin/install -c bamrefextract /<>/debian/biobambam2/usr/bin/bamrefextract libtool: install: /usr/bin/install -c fastqtobam2 /<>/debian/biobambam2/usr/bin/fastqtobam2 libtool: install: /usr/bin/install -c bamauxmerge2 /<>/debian/biobambam2/usr/bin/bamauxmerge2 libtool: install: /usr/bin/install -c bamreheader /<>/debian/biobambam2/usr/bin/bamreheader libtool: install: /usr/bin/install -c bamreplacechecksums /<>/debian/biobambam2/usr/bin/bamreplacechecksums libtool: install: /usr/bin/install -c bamfastcat /<>/debian/biobambam2/usr/bin/bamfastcat libtool: install: /usr/bin/install -c populaterefcache /<>/debian/biobambam2/usr/bin/populaterefcache libtool: install: /usr/bin/install -c bamfiltereofblocks /<>/debian/biobambam2/usr/bin/bamfiltereofblocks libtool: install: /usr/bin/install -c bamdepth /<>/debian/biobambam2/usr/bin/bamdepth libtool: install: /usr/bin/install -c bamdepthintersect /<>/debian/biobambam2/usr/bin/bamdepthintersect libtool: install: /usr/bin/install -c bamfilterk /<>/debian/biobambam2/usr/bin/bamfilterk libtool: install: /usr/bin/install -c bamfixpairinfo /<>/debian/biobambam2/usr/bin/bamfixpairinfo libtool: install: /usr/bin/install -c bamdifference /<>/debian/biobambam2/usr/bin/bamdifference libtool: install: /usr/bin/install -c bamfeaturecount /<>/debian/biobambam2/usr/bin/bamfeaturecount /bin/mkdir -p '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/bamtofastq.1 programs/bamsort.1 programs/bammarkduplicates.1 programs/bammarkduplicatesopt.1 programs/bammaskflags.1 programs/bamrecompress.1 programs/bamadapterfind.1 programs/bamfilteraux.1 programs/bamauxsort.1 programs/bamadapterclip.1 programs/bamcollate2.1 programs/bam12auxmerge.1 programs/bam12split.1 programs/bam12strip.1 programs/bamreset.1 programs/bamrank.1 programs/bamclipreinsert.1 programs/bamzztoname.1 programs/bamindex.1 programs/bamfilterflags.1 programs/bamfilterrg.1 programs/bamdownsamplerandom.1 programs/bammarkduplicates2.1 programs/bamcat.1 programs/bammerge.1 programs/bamsplit.1 programs/bamsplitdiv.1 programs/bamchecksort.1 programs/fastqtobam.1 programs/bamfixmateinformation.1 programs/normalisefasta.1 programs/bamfilterheader.1 programs/bamfilterheader2.1 programs/bammdnm.1 programs/bamseqchksum.1 programs/bamvalidate.1 programs/bamflagsplit.1 programs/bamintervalcomment.1 programs/bamstreamingmarkduplicates.1 programs/bamsormadup.1 '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/fastaexplod.1 programs/bamrecalculatecigar.1 programs/bamfiltermc.1 programs/bamfillquery.1 programs/bamalignfrac.1 programs/bamauxmerge.1 programs/bamauxmerge2.1 programs/bambisect.1 programs/bamclipXT.1 programs/bamconsensus.1 programs/filtergtf.1 programs/bamfeaturecount.1 '/<>/debian/biobambam2/usr/share/man/man1' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bamauxmerge debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamreplacechecksums debian/biobambam2/usr/bin/bamfastnumextract debian/biobambam2/usr/bin/bamnumericalindexstats debian/biobambam2/usr/bin/bamfilterk debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamzztoname debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/populaterefcache debian/biobambam2/usr/bin/bamexploderef debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/fastqtobam2 debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamdepth debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/bamfiltereofblocks debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamfixpairinfo debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/fastaexplod debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamdepthintersect debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bamfeaturecount debian/biobambam2/usr/bin/bamfastexploderef debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamreheader debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bamfastcat debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamfastsplit debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bamauxmerge2 debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/bamdifference debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bamclipXT debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/normalisefasta were not linked against libmaus2_simd_align_128.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bamauxmerge debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamreplacechecksums debian/biobambam2/usr/bin/bamfastnumextract debian/biobambam2/usr/bin/bamnumericalindexstats debian/biobambam2/usr/bin/bamfilterk debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamzztoname debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/populaterefcache debian/biobambam2/usr/bin/bamexploderef debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/fastqtobam2 debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamdepth debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/bamfiltereofblocks debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamfixpairinfo debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/fastaexplod debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamdepthintersect debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bamfeaturecount debian/biobambam2/usr/bin/bamfastexploderef debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamreheader debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bamfastcat debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamfastsplit debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bamauxmerge2 debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/bamdifference debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bamclipXT debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/normalisefasta were not linked against libmaus2_simd_align_256.so.2 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'biobambam2' in '../biobambam2_2.0.179+ds-1_i386.deb'. dpkg-deb: building package 'biobambam2-dbgsym' in '../biobambam2-dbgsym_2.0.179+ds-1_i386.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../biobambam2_2.0.179+ds-1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-06-16T09:35:17Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ biobambam2_2.0.179+ds-1_i386.changes: ------------------------------------- Format: 1.8 Date: Sun, 03 Jan 2021 11:06:34 +0100 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 2.0.179+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: biobambam2 - tools for early stage alignment file processing Changes: biobambam2 (2.0.179+ds-1) unstable; urgency=medium . * Switch d/watch to dversionmangle=auto to fix uscan constantly finding newer upstream version. * New upstream version * Standards-Version: 4.5.1 (routine-update) Checksums-Sha1: 58b8f7dfdb272c61ee6414d1a0803a949a5b6c14 204634796 biobambam2-dbgsym_2.0.179+ds-1_i386.deb fe4058e9f292ff14e1600c2012681bfdda17db99 5902 biobambam2_2.0.179+ds-1_i386.buildinfo e5f147df08a7aae988e09a4c52c77478a55e04e2 8572372 biobambam2_2.0.179+ds-1_i386.deb Checksums-Sha256: b70c1f9fba864c20349d540586d43a981ae6e6aabbead8fb5fd0ae4bcd03a9ee 204634796 biobambam2-dbgsym_2.0.179+ds-1_i386.deb 7bdb222112337c5c8c9112062a71e82e5b6181a1432ca90adfcec4483ef2229b 5902 biobambam2_2.0.179+ds-1_i386.buildinfo 34800777d82e8f8adc1de6e17a204c412ea3e3ff75ee8b180d637b03ed6d8184 8572372 biobambam2_2.0.179+ds-1_i386.deb Files: 2c99256b682110637db2d1b5893f8dd5 204634796 debug optional biobambam2-dbgsym_2.0.179+ds-1_i386.deb f4266bf7bd6c041bbc95e4ea79579d97 5902 science optional biobambam2_2.0.179+ds-1_i386.buildinfo c7cae6d6b33aa0dfcb302d6fc20f8385 8572372 science optional biobambam2_2.0.179+ds-1_i386.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Architecture: i386 Version: 2.0.179+ds-1 Checksums-Md5: 2c99256b682110637db2d1b5893f8dd5 204634796 biobambam2-dbgsym_2.0.179+ds-1_i386.deb c7cae6d6b33aa0dfcb302d6fc20f8385 8572372 biobambam2_2.0.179+ds-1_i386.deb Checksums-Sha1: 58b8f7dfdb272c61ee6414d1a0803a949a5b6c14 204634796 biobambam2-dbgsym_2.0.179+ds-1_i386.deb e5f147df08a7aae988e09a4c52c77478a55e04e2 8572372 biobambam2_2.0.179+ds-1_i386.deb Checksums-Sha256: b70c1f9fba864c20349d540586d43a981ae6e6aabbead8fb5fd0ae4bcd03a9ee 204634796 biobambam2-dbgsym_2.0.179+ds-1_i386.deb 34800777d82e8f8adc1de6e17a204c412ea3e3ff75ee8b180d637b03ed6d8184 8572372 biobambam2_2.0.179+ds-1_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Wed, 16 Jun 2021 09:35:11 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), autoconf (= 2.69-14), automake (= 1:1.16.3-2), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1), base-passwd (= 3.5.50), bash (= 5.1-3), binutils (= 2.35.2-2), binutils-aarch64-linux-gnu (= 2.35.2-2), binutils-common (= 2.35.2-2), bsdextrautils (= 2.36.1-7), bsdutils (= 1:2.36.1-7), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4), cpp (= 4:10.2.1-1), cpp-10 (= 10.2.1-6), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.3.4), debianutils (= 4.11.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dirmngr (= 2.2.27-2), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:10.2.1-1), g++-10 (= 10.2.1-6), gcc (= 4:10.2.1-1), gcc-10 (= 10.2.1-6), gcc-10-base (= 10.2.1-6), gettext (= 0.21-4), gettext-base (= 0.21-4), gnupg (= 2.2.27-2), gnupg-l10n (= 2.2.27-2), gnupg-utils (= 2.2.27-2), gpg (= 2.2.27-2), gpg-agent (= 2.2.27-2), gpg-wks-client (= 2.2.27-2), gpg-wks-server (= 2.2.27-2), gpgconf (= 2.2.27-2), gpgsm (= 2.2.27-2), gpgv (= 2.2.27-2), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-6), libassuan0 (= 2.5.4-1), libatomic1 (= 10.2.1-6), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:3.0-2), libaudit1 (= 1:3.0-2), libbinutils (= 2.35.2-2), libblkid1 (= 2.36.1-7), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-12), libc-dev-bin (= 2.31-12), libc6 (= 2.31-12), libc6-dev (= 2.31-12), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 10.2.1-6), libcom-err2 (= 1.46.2-2), libcrypt-dev (= 1:4.4.18-4), libcrypt1 (= 1:4.4.18-4), libctf-nobfd0 (= 2.35.2-2), libctf0 (= 2.35.2-2), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.259), libdebhelper-perl (= 13.3.4), libdpkg-perl (= 1.20.9), libelf1 (= 0.183-3), libffi7 (= 3.3-6), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-10-dev (= 10.2.1-6), libgcc-s1 (= 10.2.1-6), libgcrypt20 (= 1.8.7-6), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libglib2.0-0 (= 2.66.8-1), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.7.1-5), libgomp1 (= 10.2.1-6), libgpg-error0 (= 1.38-2), libgpgme11 (= 1.14.0-1+b2), libgssapi-krb5-2 (= 1.18.3-5), libhogweed6 (= 3.7.3-1), libicu67 (= 67.1-6), libidn2-0 (= 2.3.0-5), libisl23 (= 0.23-1), libitm1 (= 10.2.1-6), libk5crypto3 (= 1.18.3-5), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-5), libkrb5support0 (= 1.18.3-5), libksba8 (= 1.5.0-3), libldap-2.4-2 (= 2.4.57+dfsg-3), liblsan0 (= 10.2.1-6), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmaus2-2 (= 2.0.768+dfsg-2), libmaus2-dev (= 2.0.768+dfsg-2), libmount1 (= 2.36.1-7), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncursesw6 (= 6.2+20201114-2), libnettle8 (= 3.7.3-1), libnpth0 (= 1.6-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.4.0-7), libpam-modules-bin (= 1.4.0-7), libpam-runtime (= 1.4.0-7), libpam0g (= 1.4.0-7), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-4), libpipeline1 (= 1.5.3-1), libreadline8 (= 8.1-2), libsasl2-2 (= 2.1.27+dfsg-2.1), libsasl2-modules-db (= 2.1.27+dfsg-2.1), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-3), libsemanage-common (= 3.1-1), libsemanage1 (= 3.1-1+b2), libsepol1 (= 3.1-1), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.36.1-7), libsqlite3-0 (= 3.34.1-3), libssl1.1 (= 1.1.1k-1), libstdc++-10-dev (= 10.2.1-6), libstdc++6 (= 10.2.1-6), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.3-5), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtool (= 2.4.6-15), libtsan0 (= 10.2.1-6), libubsan1 (= 10.2.1-6), libuchardet0 (= 0.0.7-1), libudev1 (= 247.3-5), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-7), libxml2 (= 2.9.10+dfsg-6.7), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.10.40-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), passwd (= 1:4.8.1-1), patch (= 2.7.6-7), perl (= 5.32.1-4), perl-base (= 5.32.1-4), perl-modules-5.32 (= 5.32.1-4), pinentry-curses (= 1.1.0-4), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21+nmu1), readline-common (= 8.1-2), sed (= 4.7-1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7), tar (= 1.34+dfsg-1), util-linux (= 2.36.1-7), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609668394" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ biobambam2-dbgsym_2.0.179+ds-1_i386.deb --------------------------------------- new Debian package, version 2.0. size 204634796 bytes: control archive=3984 bytes. 3469 bytes, 12 lines control 8141 bytes, 77 lines md5sums Package: biobambam2-dbgsym Source: biobambam2 Version: 2.0.179+ds-1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 213431 Depends: biobambam2 (= 2.0.179+ds-1) Section: debug Priority: optional Description: debug symbols for biobambam2 Build-Ids: 03d328b7def9060ec116898e33b4186649f9e911 0df0b96b4750df7cbdc5b5311e02307f2ab7e665 146a259c6085373e749cda614351e8ad392d5d3b 161503359fdaa980e4da8dd8d7f250e996fae0e7 19488bddd8b6608e5b12a6bf90a39c59ce377171 1e7cc9f8feee4befc568ab5c393551f974c767ea 1f61a528eea003c6fb811c5a1fb78bd0dd5a4395 217d353e30744f625eeb41afeeeda836b61aef89 22ffa6429bd2e8fb55ddb816e60eb833c4f9f2b9 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2021-01-03 10:06 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-01-03 10:06 ./usr/lib/debug/.dwz/i386-linux-gnu/ -rw-r--r-- root/root 5259104 2021-01-03 10:06 ./usr/lib/debug/.dwz/i386-linux-gnu/biobambam2.debug drwxr-xr-x root/root 0 2021-01-03 10:06 ./usr/share/ drwxr-xr-x root/root 0 2021-01-03 10:06 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-01-03 10:06 ./usr/share/doc/biobambam2-dbgsym -> biobambam2 biobambam2_2.0.179+ds-1_i386.deb -------------------------------- new Debian package, version 2.0. size 8572372 bytes: control archive=4328 bytes. 1281 bytes, 25 lines control 8885 bytes, 140 lines md5sums Package: biobambam2 Version: 2.0.179+ds-1 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 60423 Depends: libc6 (>= 2.29), libgcc-s1 (>= 7), libgomp1 (>= 6), libmaus2-2 (>= 2.0.768+dfsg), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://gitlab.com/german.tischler/biobambam2 Description: tools for early stage alignment file processing This package contains some tools for processing BAM files, including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name drwxr-xr-x root/root 0 2021-01-03 10:06 ./ drwxr-xr-x root/root 0 2021-01-03 10:06 ./usr/ drwxr-xr-x root/root 0 2021-01-03 10:06 ./usr/bin/ -rwxr-xr-x root/root 993452 2021-01-03 10:06 ./usr/bin/bam12auxmerge -rwxr-xr-x root/root 882860 2021-01-03 10:06 ./usr/bin/bam12split -rwxr-xr-x root/root 886956 2021-01-03 10:06 ./usr/bin/bam12strip -rwxr-xr-x root/root 899244 2021-01-03 10:06 ./usr/bin/bamadapterclip -rwxr-xr-x root/root 1038508 2021-01-03 10:06 ./usr/bin/bamadapterfind -rwxr-xr-x root/root 780460 2021-01-03 10:06 ./usr/bin/bamalignfrac -rwxr-xr-x root/root 940204 2021-01-03 10:06 ./usr/bin/bamauxmerge -rwxr-xr-x root/root 583316 2021-01-03 10:06 ./usr/bin/bamauxmerge2 -rwxr-xr-x root/root 886956 2021-01-03 10:06 ./usr/bin/bamauxsort -rwxr-xr-x root/root 870572 2021-01-03 10:06 ./usr/bin/bamcat -rwxr-xr-x root/root 755884 2021-01-03 10:06 ./usr/bin/bamchecksort -rwxr-xr-x root/root 829612 2021-01-03 10:06 ./usr/bin/bamclipXT -rwxr-xr-x root/root 915628 2021-01-03 10:06 ./usr/bin/bamclipreinsert -rwxr-xr-x root/root 1079468 2021-01-03 10:06 ./usr/bin/bamcollate2 -rwxr-xr-x root/root 768172 2021-01-03 10:06 ./usr/bin/bamdepth -rwxr-xr-x root/root 821420 2021-01-03 10:06 ./usr/bin/bamdepthintersect -rwxr-xr-x root/root 850092 2021-01-03 10:06 ./usr/bin/bamdifference -rwxr-xr-x root/root 1022124 2021-01-03 10:06 ./usr/bin/bamdownsamplerandom -rwxr-xr-x root/root 817324 2021-01-03 10:06 ./usr/bin/bamexplode -rwxr-xr-x root/root 641196 2021-01-03 10:06 ./usr/bin/bamexploderef -rwxr-xr-x root/root 411816 2021-01-03 10:06 ./usr/bin/bamfastcat -rwxr-xr-x root/root 776364 2021-01-03 10:06 ./usr/bin/bamfastexploderef -rwxr-xr-x root/root 415916 2021-01-03 10:06 ./usr/bin/bamfastnumextract -rwxr-xr-x root/root 420012 2021-01-03 10:06 ./usr/bin/bamfastsplit -rwxr-xr-x root/root 1186008 2021-01-03 10:06 ./usr/bin/bamfeaturecount -rwxr-xr-x root/root 940204 2021-01-03 10:06 ./usr/bin/bamfillquery -rwxr-xr-x root/root 882860 2021-01-03 10:06 ./usr/bin/bamfilteraux -rwxr-xr-x root/root 42584 2021-01-03 10:06 ./usr/bin/bamfiltereofblocks -rwxr-xr-x root/root 944300 2021-01-03 10:06 ./usr/bin/bamfilterflags -rwxr-xr-x root/root 927916 2021-01-03 10:06 ./usr/bin/bamfilterheader -rwxr-xr-x root/root 222864 2021-01-03 10:06 ./usr/bin/bamfilterheader2 -rwxr-xr-x root/root 891052 2021-01-03 10:06 ./usr/bin/bamfilterk -rwxr-xr-x root/root 923820 2021-01-03 10:06 ./usr/bin/bamfilterlength -rwxr-xr-x root/root 927916 2021-01-03 10:06 ./usr/bin/bamfiltermc -rwxr-xr-x root/root 882860 2021-01-03 10:06 ./usr/bin/bamfilternames -rwxr-xr-x root/root 882860 2021-01-03 10:06 ./usr/bin/bamfilterrefid -rwxr-xr-x root/root 882860 2021-01-03 10:06 ./usr/bin/bamfilterrg -rwxr-xr-x root/root 841900 2021-01-03 10:06 ./usr/bin/bamfixmateinformation -rwxr-xr-x root/root 927916 2021-01-03 10:06 ./usr/bin/bamfixpairinfo -rwxr-xr-x root/root 833708 2021-01-03 10:06 ./usr/bin/bamflagsplit -rwxr-xr-x root/root 276112 2021-01-03 10:06 ./usr/bin/bamindex -rwxr-xr-x root/root 1005740 2021-01-03 10:06 ./usr/bin/bamintervalcomment -rwxr-xr-x root/root 772268 2021-01-03 10:06 ./usr/bin/bamintervalcommenthist -rwxr-xr-x root/root 776364 2021-01-03 10:06 ./usr/bin/bammapdist -rwxr-xr-x root/root 1214636 2021-01-03 10:06 ./usr/bin/bammarkduplicates -rwxr-xr-x root/root 1263788 2021-01-03 10:06 ./usr/bin/bammarkduplicates2 -rwxr-xr-x root/root 1337516 2021-01-03 10:06 ./usr/bin/bammarkduplicatesopt -rwxr-xr-x root/root 886956 2021-01-03 10:06 ./usr/bin/bammaskflags -rwxr-xr-x root/root 456336 2021-01-03 10:06 ./usr/bin/bammdnm -rwxr-xr-x root/root 927916 2021-01-03 10:06 ./usr/bin/bammerge -rwxr-xr-x root/root 186000 2021-01-03 10:06 ./usr/bin/bamnumericalindex -rwxr-xr-x root/root 354476 2021-01-03 10:06 ./usr/bin/bamnumericalindexstats -rwxr-xr-x root/root 882860 2021-01-03 10:06 ./usr/bin/bamrank -rwxr-xr-x root/root 833708 2021-01-03 10:06 ./usr/bin/bamranksort -rwxr-xr-x root/root 948396 2021-01-03 10:06 ./usr/bin/bamrecalculatecigar -rwxr-xr-x root/root 362132 2021-01-03 10:06 ./usr/bin/bamrecompress -rwxr-xr-x root/root 821420 2021-01-03 10:06 ./usr/bin/bamrefextract -rwxr-xr-x root/root 919724 2021-01-03 10:06 ./usr/bin/bamrefinterval -rwxr-xr-x root/root 370844 2021-01-03 10:06 ./usr/bin/bamreheader -rwxr-xr-x root/root 374940 2021-01-03 10:06 ./usr/bin/bamreplacechecksums -rwxr-xr-x root/root 886956 2021-01-03 10:06 ./usr/bin/bamreset -rwxr-xr-x root/root 747692 2021-01-03 10:06 ./usr/bin/bamscrapcount -rwxr-xr-x root/root 817324 2021-01-03 10:06 ./usr/bin/bamseqchksum -rwxr-xr-x root/root 2103468 2021-01-03 10:06 ./usr/bin/bamsormadup -rwxr-xr-x root/root 1493164 2021-01-03 10:06 ./usr/bin/bamsort -rwxr-xr-x root/root 817324 2021-01-03 10:06 ./usr/bin/bamsplit -rwxr-xr-x root/root 776364 2021-01-03 10:06 ./usr/bin/bamsplitdiv 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./usr/share/man/man1/bamvalidate.1.gz -rw-r--r-- root/root 1088 2021-01-03 10:06 ./usr/share/man/man1/bamzztoname.1.gz -rw-r--r-- root/root 967 2021-01-03 10:06 ./usr/share/man/man1/fastaexplod.1.gz -rw-r--r-- root/root 2592 2021-01-03 10:06 ./usr/share/man/man1/fastqtobam.1.gz -rw-r--r-- root/root 671 2021-01-03 10:06 ./usr/share/man/man1/filtergtf.1.gz -rw-r--r-- root/root 1076 2021-01-03 10:06 ./usr/share/man/man1/normalisefasta.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [545 B] Get:5 copy:/<>/apt_archive ./ Packages [635 B] Fetched 2143 B in 0s (51.3 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat libaliased-perl libapt-pkg-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat libaliased-perl libapt-pkg-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:i386 t1utils unzip 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded. Need to get 4997 kB of archives. After this operation, 16.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian sid/main arm64 diffstat arm64 1.64-1 [34.6 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 libapt-pkg-perl arm64 0.1.40 [69.4 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libb-hooks-op-check-perl arm64 0.22-1+b3 [11.2 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 libdevel-callchecker-perl arm64 0.008-1+b2 [15.8 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libparams-classify-perl arm64 0.015-1+b3 [25.5 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:13 http://mirror.einval.org/debian sid/main arm64 libvariable-magic-perl arm64 0.62-1+b3 [44.2 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:17 http://mirror.einval.org/debian sid/main arm64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 libclass-xsaccessor-perl arm64 1.19-3+b7 [36.9 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 libclone-perl arm64 0.45-1+b1 [15.3 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 libconfig-tiny-perl all 2.26-1 [16.5 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 libcpanel-json-xs-perl arm64 4.25-1+b1 [127 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 libexception-class-perl all 1.44-1 [32.3 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-xs-perl arm64 0.430-2 [36.8 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libparams-util-perl arm64 1.102-1+b1 [25.3 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libdata-optlist-perl all 0.110-1.1 [10.8 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libdata-messagepack-perl arm64 1.00-4+b1 [37.6 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libdevel-size-perl arm64 0.83-1+b2 [25.8 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libemail-address-xs-perl arm64 1.04-1+b3 [26.7 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:42 http://mirror.einval.org/debian sid/main arm64 libtext-glob-perl all 0.11-1 [8888 B] Get:43 http://mirror.einval.org/debian sid/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.6-1 [34.3 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.004004-1 [59.9 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b1 [170 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-1+b3 [11.9 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b1 [13.5 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.19-1+b7 [17.0 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.59-2+b1 [45.7 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.018+ds-1+b1 [95.3 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.018+ds-1+b1 [98.3 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-4+b8 [8680 B] Get:69 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.12-1+b1 [12.9 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.8-1+b1 [195 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b3 [75.1 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libtype-tiny-perl all 1.012002-1 [351 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b2 [19.8 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.08-1 [90.6 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.82+repack-1+b1 [34.5 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.22-3 [84.7 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4997 kB in 2s (2020 kB/s) Selecting previously unselected package diffstat. (Reading database ... 20547 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../01-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../02-libapt-pkg-perl_0.1.40_arm64.deb ... Unpacking libapt-pkg-perl (0.1.40) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../03-libb-hooks-op-check-perl_0.22-1+b3_arm64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b3) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../04-libdynaloader-functions-perl_0.003-1.1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1.1) ... Selecting previously unselected package libdevel-callchecker-perl. 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Preparing to unpack .../15-libclass-method-modifiers-perl_2.13-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../16-libclass-xsaccessor-perl_1.19-3+b7_arm64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b7) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../17-libclone-perl_0.45-1+b1_arm64.deb ... Unpacking libclone-perl (0.45-1+b1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../18-libconfig-tiny-perl_2.26-1_all.deb ... Unpacking libconfig-tiny-perl (2.26-1) ... Selecting previously unselected package libcpanel-json-xs-perl. Preparing to unpack .../19-libcpanel-json-xs-perl_4.25-1+b1_arm64.deb ... Unpacking libcpanel-json-xs-perl (4.25-1+b1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../20-libdevel-stacktrace-perl_2.0400-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../21-libexception-class-perl_1.44-1_all.deb ... Unpacking libexception-class-perl (1.44-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../22-libiterator-perl_0.03+ds1-1.1_all.deb ... Unpacking libiterator-perl (0.03+ds1-1.1) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../23-libiterator-util-perl_0.02+ds1-1.1_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-1.1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../24-libexporter-tiny-perl_1.002002-1_all.deb ... Unpacking libexporter-tiny-perl (1.002002-1) ... Selecting previously unselected package liblist-moreutils-xs-perl. Preparing to unpack .../25-liblist-moreutils-xs-perl_0.430-2_arm64.deb ... Unpacking liblist-moreutils-xs-perl (0.430-2) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 3751908 Build-Time: 16822 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 65 Job: biobambam2_2.0.179+ds-1 Lintian: pass Machine Architecture: arm64 Package: biobambam2 Package-Time: 16916 Source-Version: 2.0.179+ds-1 Space: 3751908 Status: successful Version: 2.0.179+ds-1 -------------------------------------------------------------------------------- Finished at 2021-06-16T09:35:17Z Build needed 04:41:56, 3751908k disk space