sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +==============================================================================+ | biobambam2 2.0.183+ds-1 (amd64) Thu, 30 Sep 2021 23:37:08 +0000 | +==============================================================================+ Package: biobambam2 Version: 2.0.183+ds-1 Source Version: 2.0.183+ds-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-3febd5bb-e286-41ad-95aa-bbc49fccb0e3' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-XcH32V/resolver-QbdQHN' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [165 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main amd64 Packages [8780 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9248 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8643 kB] Fetched 26.8 MB in 7s (3822 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'biobambam2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biobambam2.git Please use: git clone https://salsa.debian.org/med-team/biobambam2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1283 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main biobambam2 2.0.183+ds-1 (dsc) [2119 B] Get:2 http://mirror.einval.org/debian sid/main biobambam2 2.0.183+ds-1 (tar) [249 kB] Get:3 http://mirror.einval.org/debian sid/main biobambam2 2.0.183+ds-1 (diff) [1032 kB] Fetched 1283 kB in 0s (15.0 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/biobambam2-XcH32V/biobambam2-2.0.183+ds' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-XcH32V' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkg-config, libmaus2-dev (>= 2.0.800), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), pkg-config, libmaus2-dev (>= 2.0.800), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [429 B] Get:5 copy:/<>/apt_archive ./ Packages [519 B] Fetched 1905 B in 0s (45.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-10-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dpkg-cross dwz file g++-10-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-10-base:amd64 gcc-10-cross-base gcc-10-x86-64-linux-gnu gcc-10-x86-64-linux-gnu-base gcc-11-base:amd64 gcc-11-cross-base gcc-x86-64-linux-gnu gettext gettext-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libasan6:amd64 libasan6-amd64-cross libassuan0 libassuan0:amd64 libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev:amd64 libgcc-10-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libglib2.0-0 libgmp10:amd64 libgomp1:amd64 libgomp1-amd64-cross libgpg-error0:amd64 libgpgme11:amd64 libgssapi-krb5-2:amd64 libicu67 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 libksba8 libldap-2.4-2 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libmaus2-2:amd64 libmaus2-dev:amd64 libncursesw6 libnettle8:amd64 libnpth0 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssl1.1:amd64 libstdc++-10-dev:amd64 libstdc++-10-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db pinentry-curses pkg-config po-debconf readline-common sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make dbus-user-session libpam-systemd pinentry-gnome3 tor binutils-multiarch g++-10-multilib-x86-64-linux-gnu gcc-10-doc gcc-10-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev parcimonie xloadimage scdaemon groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc:amd64 krb5-user:amd64 secrecy:amd64 libstdc++-10-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser pinentry-doc libmail-box-perl readline-doc Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:amd64 krb5-locales:amd64 libldap-common libgpm2 libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-10-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dpkg-cross dwz file g++-10-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-10-base:amd64 gcc-10-cross-base gcc-10-x86-64-linux-gnu gcc-10-x86-64-linux-gnu-base gcc-11-base:amd64 gcc-11-cross-base gcc-x86-64-linux-gnu gettext gettext-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libasan6:amd64 libasan6-amd64-cross libassuan0 libassuan0:amd64 libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev:amd64 libgcc-10-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libglib2.0-0 libgmp10:amd64 libgomp1:amd64 libgomp1-amd64-cross libgpg-error0:amd64 libgpgme11:amd64 libgssapi-krb5-2:amd64 libicu67 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 libksba8 libldap-2.4-2 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libmaus2-2:amd64 libmaus2-dev:amd64 libncursesw6 libnettle8:amd64 libnpth0 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssl1.1:amd64 libstdc++-10-dev:amd64 libstdc++-10-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db pinentry-curses pkg-config po-debconf readline-common sbuild-build-depends-main-dummy:amd64 sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 222 MB of archives. After this operation, 994 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.37.2-3 [143 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-7 [883 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get:8 http://mirror.einval.org/debian sid/main amd64 gcc-10-base amd64 10.3.0-11 [206 kB] Get:9 http://mirror.einval.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-8 [205 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 readline-common all 8.1-2 [73.8 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libreadline8 arm64 8.1-2 [160 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.39-3 [69.1 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-4 [173 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.4-2 [819 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-4 [510 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 gcc-10-x86-64-linux-gnu-base arm64 10.3.0-8cross1 [205 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 cpp-10-x86-64-linux-gnu arm64 10.3.0-8cross1 [46.3 MB] Get:26 http://mirror.einval.org/debian sid/main arm64 cpp-x86-64-linux-gnu arm64 4:10.2.1-1 [16.8 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 binutils-x86-64-linux-gnu arm64 2.37-7 [2046 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 gcc-10-cross-base all 10.3.0-8cross1 [200 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 gcc-11-cross-base all 11.2.0-5cross1 [201 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-amd64-cross all 11.2.0-5cross1 [42.0 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libgomp1-amd64-cross all 11.2.0-5cross1 [104 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libitm1-amd64-cross all 11.2.0-5cross1 [25.5 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libatomic1-amd64-cross all 11.2.0-5cross1 [8776 B] Get:35 http://mirror.einval.org/debian sid/main arm64 libasan6-amd64-cross all 11.2.0-5cross1 [2041 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 liblsan0-amd64-cross all 11.2.0-5cross1 [884 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libtsan0-amd64-cross all 11.2.0-5cross1 [2007 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libc6-amd64-cross all 2.32-1cross4 [1570 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libstdc++6-amd64-cross all 11.2.0-5cross1 [535 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libubsan1-amd64-cross all 11.2.0-5cross1 [832 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libquadmath0-amd64-cross all 11.2.0-5cross1 [144 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libgcc-10-dev-amd64-cross all 10.3.0-8cross1 [2323 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 gcc-10-x86-64-linux-gnu arm64 10.3.0-8cross1 [52.3 MB] Get:44 http://mirror.einval.org/debian sid/main arm64 gcc-x86-64-linux-gnu arm64 4:10.2.1-1 [1460 B] Get:45 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-amd64-cross all 5.10.46-4cross4 [1468 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libc6-dev-amd64-cross all 2.32-1cross4 [2248 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libstdc++-10-dev-amd64-cross all 10.3.0-8cross1 [1733 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 g++-10-x86-64-linux-gnu arm64 10.3.0-8cross1 [49.3 MB] Get:49 http://mirror.einval.org/debian sid/main arm64 g++-x86-64-linux-gnu arm64 4:10.2.1-1 [1180 B] Get:50 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.12+dfsg-5 [632 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0134+dfsg-2+b1 [326 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B] Get:66 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.5.2 [192 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.6-15 [513 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.185-2 [171 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-4 [1261 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.5.2 [1056 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libassuan0 arm64 2.5.5-1 [49.3 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 gpgconf arm64 2.2.27-2 [540 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libksba8 arm64 1.6.0-2 [119 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libldap-2.4-2 arm64 2.4.59+dfsg-1 [222 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libnpth0 arm64 1.6-3 [18.6 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 dirmngr arm64 2.2.27-2 [744 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 gnupg-l10n all 2.2.27-2 [1084 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 gnupg-utils arm64 2.2.27-2 [863 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 libsqlite3-0 arm64 3.36.0-2 [768 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 gpg arm64 2.2.27-2 [883 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 libncursesw6 arm64 6.2+20210905-1 [122 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 pinentry-curses arm64 1.1.0-4 [63.0 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 gpg-agent arm64 2.2.27-2 [651 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 gpg-wks-client arm64 2.2.27-2 [517 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 gpg-wks-server arm64 2.2.27-2 [510 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 gpgsm arm64 2.2.27-2 [627 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 gnupg all 2.2.27-2 [825 kB] Get:98 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-8 [42.0 kB] Get:99 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.32-4 [2820 kB] Get:100 http://mirror.einval.org/debian sid/main amd64 libasan6 amd64 11.2.0-8 [2048 kB] Get:101 http://mirror.einval.org/debian sid/main amd64 libgpg-error0 amd64 1.42-3 [79.0 kB] Get:102 http://mirror.einval.org/debian sid/main amd64 libassuan0 amd64 2.5.5-1 [51.8 kB] Get:103 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 11.2.0-8 [9056 B] Get:104 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.14.6-3 [1420 kB] Get:105 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.25-2 [89.2 kB] Get:106 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.25-2 [104 kB] Get:107 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.4-1 [75.2 kB] Get:108 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.18.3-7 [65.4 kB] Get:109 http://mirror.einval.org/debian sid/main amd64 libk5crypto3 amd64 1.18.3-7 [113 kB] Get:110 http://mirror.einval.org/debian sid/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:111 http://mirror.einval.org/debian sid/main amd64 libssl1.1 amd64 1.1.1l-1 [1555 kB] Get:112 http://mirror.einval.org/debian sid/main amd64 libkrb5-3 amd64 1.18.3-7 [363 kB] Get:113 http://mirror.einval.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.18.3-7 [165 kB] Get:114 http://mirror.einval.org/debian sid/main amd64 libtirpc3 amd64 1.3.2-2 [83.9 kB] Get:115 http://mirror.einval.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:116 http://mirror.einval.org/debian sid/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:117 http://mirror.einval.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:118 http://mirror.einval.org/debian sid/main amd64 libc6-dev amd64 2.32-4 [2251 kB] Get:119 http://mirror.einval.org/debian sid/main amd64 libgomp1 amd64 11.2.0-8 [106 kB] Get:120 http://mirror.einval.org/debian sid/main amd64 libitm1 amd64 11.2.0-8 [26.0 kB] Get:121 http://mirror.einval.org/debian sid/main amd64 liblsan0 amd64 11.2.0-8 [885 kB] Get:122 http://mirror.einval.org/debian sid/main amd64 libtsan0 amd64 11.2.0-8 [2014 kB] Get:123 http://mirror.einval.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-8 [577 kB] Get:124 http://mirror.einval.org/debian sid/main amd64 libubsan1 amd64 11.2.0-8 [833 kB] Get:125 http://mirror.einval.org/debian sid/main amd64 libquadmath0 amd64 11.2.0-8 [145 kB] Get:126 http://mirror.einval.org/debian sid/main amd64 libgcc-10-dev amd64 10.3.0-11 [2323 kB] Get:127 http://mirror.einval.org/debian sid/main arm64 libglib2.0-0 arm64 2.70.0-1+b1 [1311 kB] Get:128 http://mirror.einval.org/debian sid/main amd64 libgmp10 amd64 2:6.2.1+dfsg-2 [561 kB] Get:129 http://mirror.einval.org/debian sid/main amd64 libgpgme11 amd64 1.16.0-1.1 [291 kB] Get:130 http://mirror.einval.org/debian sid/main amd64 libnettle8 amd64 3.7.3-1 [270 kB] Get:131 http://mirror.einval.org/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB] Get:132 http://mirror.einval.org/debian sid/main amd64 libmaus2-2 amd64 2.0.803+dfsg-1 [1602 kB] Get:133 http://mirror.einval.org/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get:134 http://mirror.einval.org/debian sid/main amd64 libmaus2-dev amd64 2.0.803+dfsg-1 [2954 kB] Get:135 http://mirror.einval.org/debian sid/main amd64 libstdc++-10-dev amd64 10.3.0-11 [1750 kB] Get:136 http://mirror.einval.org/debian sid/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 222 MB in 3s (84.3 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12286 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-3_arm64.deb ... Unpacking bsdextrautils (2.37.2-3) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../001-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-7_arm64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../003-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../005-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-10-base:amd64. Preparing to unpack .../006-gcc-10-base_10.3.0-11_amd64.deb ... Unpacking gcc-10-base:amd64 (10.3.0-11) ... Selecting previously unselected package gcc-11-base:amd64. Preparing to unpack .../007-gcc-11-base_11.2.0-8_amd64.deb ... Unpacking gcc-11-base:amd64 (11.2.0-8) ... Selecting previously unselected package readline-common. Preparing to unpack .../008-readline-common_8.1-2_all.deb ... Unpacking readline-common (8.1-2) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../009-libreadline8_8.1-2_arm64.deb ... Unpacking libreadline8:arm64 (8.1-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../010-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../011-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../012-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../013-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../016-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../017-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../018-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../019-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../020-automake_1%3a1.16.4-2_all.deb ... Unpacking automake (1:1.16.4-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../021-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package gcc-10-x86-64-linux-gnu-base:arm64. Preparing to unpack .../022-gcc-10-x86-64-linux-gnu-base_10.3.0-8cross1_arm64.deb ... Unpacking gcc-10-x86-64-linux-gnu-base:arm64 (10.3.0-8cross1) ... Selecting previously unselected package cpp-10-x86-64-linux-gnu. Preparing to unpack .../023-cpp-10-x86-64-linux-gnu_10.3.0-8cross1_arm64.deb ... Unpacking cpp-10-x86-64-linux-gnu (10.3.0-8cross1) ... Selecting previously unselected package cpp-x86-64-linux-gnu. Preparing to unpack .../024-cpp-x86-64-linux-gnu_4%3a10.2.1-1_arm64.deb ... Unpacking cpp-x86-64-linux-gnu (4:10.2.1-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../025-cross-config_2.6.18+nmu2_all.deb ... Unpacking cross-config (2.6.18+nmu2) ... Selecting previously unselected package binutils-x86-64-linux-gnu. Preparing to unpack .../026-binutils-x86-64-linux-gnu_2.37-7_arm64.deb ... Unpacking binutils-x86-64-linux-gnu (2.37-7) ... Selecting previously unselected package gcc-10-cross-base. Preparing to unpack .../027-gcc-10-cross-base_10.3.0-8cross1_all.deb ... Unpacking gcc-10-cross-base (10.3.0-8cross1) ... Selecting previously unselected package gcc-11-cross-base. Preparing to unpack .../028-gcc-11-cross-base_11.2.0-5cross1_all.deb ... Unpacking gcc-11-cross-base (11.2.0-5cross1) ... Selecting previously unselected package libgcc-s1-amd64-cross. Preparing to unpack .../029-libgcc-s1-amd64-cross_11.2.0-5cross1_all.deb ... Unpacking libgcc-s1-amd64-cross (11.2.0-5cross1) ... Selecting previously unselected package libgomp1-amd64-cross. Preparing to unpack .../030-libgomp1-amd64-cross_11.2.0-5cross1_all.deb ... Unpacking libgomp1-amd64-cross (11.2.0-5cross1) ... Selecting previously unselected package libitm1-amd64-cross. Preparing to unpack .../031-libitm1-amd64-cross_11.2.0-5cross1_all.deb ... Unpacking libitm1-amd64-cross (11.2.0-5cross1) ... Selecting previously unselected package libatomic1-amd64-cross. Preparing to unpack .../032-libatomic1-amd64-cross_11.2.0-5cross1_all.deb ... Unpacking libatomic1-amd64-cross (11.2.0-5cross1) ... Selecting previously unselected package libasan6-amd64-cross. Preparing to unpack .../033-libasan6-amd64-cross_11.2.0-5cross1_all.deb ... Unpacking libasan6-amd64-cross (11.2.0-5cross1) ... Selecting previously unselected package liblsan0-amd64-cross. Preparing to unpack .../034-liblsan0-amd64-cross_11.2.0-5cross1_all.deb ... Unpacking liblsan0-amd64-cross (11.2.0-5cross1) ... Selecting previously unselected package libtsan0-amd64-cross. Preparing to unpack .../035-libtsan0-amd64-cross_11.2.0-5cross1_all.deb ... Unpacking libtsan0-amd64-cross (11.2.0-5cross1) ... Selecting previously unselected package libc6-amd64-cross. Preparing to unpack .../036-libc6-amd64-cross_2.32-1cross4_all.deb ... Unpacking libc6-amd64-cross (2.32-1cross4) ... Selecting previously unselected package libstdc++6-amd64-cross. Preparing to unpack .../037-libstdc++6-amd64-cross_11.2.0-5cross1_all.deb ... Unpacking libstdc++6-amd64-cross (11.2.0-5cross1) ... Selecting previously unselected package libubsan1-amd64-cross. Preparing to unpack .../038-libubsan1-amd64-cross_11.2.0-5cross1_all.deb ... Unpacking libubsan1-amd64-cross (11.2.0-5cross1) ... Selecting previously unselected package libquadmath0-amd64-cross. Preparing to unpack .../039-libquadmath0-amd64-cross_11.2.0-5cross1_all.deb ... Unpacking libquadmath0-amd64-cross (11.2.0-5cross1) ... Selecting previously unselected package libgcc-10-dev-amd64-cross. Preparing to unpack .../040-libgcc-10-dev-amd64-cross_10.3.0-8cross1_all.deb ... Unpacking libgcc-10-dev-amd64-cross (10.3.0-8cross1) ... Selecting previously unselected package gcc-10-x86-64-linux-gnu. Preparing to unpack .../041-gcc-10-x86-64-linux-gnu_10.3.0-8cross1_arm64.deb ... Unpacking gcc-10-x86-64-linux-gnu (10.3.0-8cross1) ... Selecting previously unselected package gcc-x86-64-linux-gnu. Preparing to unpack .../042-gcc-x86-64-linux-gnu_4%3a10.2.1-1_arm64.deb ... Unpacking gcc-x86-64-linux-gnu (4:10.2.1-1) ... Selecting previously unselected package linux-libc-dev-amd64-cross. Preparing to unpack .../043-linux-libc-dev-amd64-cross_5.10.46-4cross4_all.deb ... Unpacking linux-libc-dev-amd64-cross (5.10.46-4cross4) ... Selecting previously unselected package libc6-dev-amd64-cross. Preparing to unpack .../044-libc6-dev-amd64-cross_2.32-1cross4_all.deb ... Unpacking libc6-dev-amd64-cross (2.32-1cross4) ... Selecting previously unselected package libstdc++-10-dev-amd64-cross. Preparing to unpack .../045-libstdc++-10-dev-amd64-cross_10.3.0-8cross1_all.deb ... Unpacking libstdc++-10-dev-amd64-cross (10.3.0-8cross1) ... Selecting previously unselected package g++-10-x86-64-linux-gnu. Preparing to unpack .../046-g++-10-x86-64-linux-gnu_10.3.0-8cross1_arm64.deb ... Unpacking g++-10-x86-64-linux-gnu (10.3.0-8cross1) ... Selecting previously unselected package g++-x86-64-linux-gnu. Preparing to unpack .../047-g++-x86-64-linux-gnu_4%3a10.2.1-1_arm64.deb ... Unpacking g++-x86-64-linux-gnu (4:10.2.1-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../048-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../049-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../050-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../051-libxml2_2.9.12+dfsg-5_arm64.deb ... Unpacking libxml2:arm64 (2.9.12+dfsg-5) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../052-libxml-namespacesupport-perl_1.12-1.1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1.1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../053-libxml-sax-base-perl_1.09-1.1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1.1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../054-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. 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Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../061-libdebian-dpkgcross-perl_2.6.18+nmu2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.18+nmu2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../062-dpkg-cross_2.6.18+nmu2_all.deb ... Unpacking dpkg-cross (2.6.18+nmu2) ... Selecting previously unselected package crossbuild-essential-amd64. Preparing to unpack .../063-crossbuild-essential-amd64_12.9_all.deb ... Unpacking crossbuild-essential-amd64 (12.9) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../064-libdebhelper-perl_13.5.2_all.deb ... Unpacking libdebhelper-perl (13.5.2) ... Selecting previously unselected package libtool. Preparing to unpack .../065-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../066-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../067-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../068-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../069-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../070-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../071-libelf1_0.185-2_arm64.deb ... Unpacking libelf1:arm64 (0.185-2) ... Selecting previously unselected package dwz. Preparing to unpack .../072-dwz_0.14-1_arm64.deb ... Unpacking dwz (0.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../073-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../074-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../075-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../076-debhelper_13.5.2_all.deb ... Unpacking debhelper (13.5.2) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../077-libassuan0_2.5.5-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../078-gpgconf_2.2.27-2_arm64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package libksba8:arm64. Preparing to unpack .../079-libksba8_1.6.0-2_arm64.deb ... Unpacking libksba8:arm64 (1.6.0-2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../080-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../081-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../082-libldap-2.4-2_2.4.59+dfsg-1_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.59+dfsg-1) ... Selecting previously unselected package libnpth0:arm64. Preparing to unpack .../083-libnpth0_1.6-3_arm64.deb ... Unpacking libnpth0:arm64 (1.6-3) ... Selecting previously unselected package dirmngr. Preparing to unpack .../084-dirmngr_2.2.27-2_arm64.deb ... Unpacking dirmngr (2.2.27-2) ... 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Setting up libc6-amd64-cross (2.32-1cross4) ... Setting up libncursesw6:arm64 (6.2+20210905-1) ... Setting up gcc-10-cross-base (10.3.0-8cross1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Setting up gcc-11-cross-base (11.2.0-5cross1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up gcc-10-x86-64-linux-gnu-base:arm64 (10.3.0-8cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgcc-s1-amd64-cross (11.2.0-5cross1) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:arm64 (0.185-2) ... Setting up readline-common (8.1-2) ... Setting up libxml2:arm64 (2.9.12+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libasan6-amd64-cross (11.2.0-5cross1) ... Setting up binutils-x86-64-linux-gnu (2.37-7) ... Setting up libstdc++6-amd64-cross (11.2.0-5cross1) ... Setting up pinentry-curses (1.1.0-4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up liblsan0-amd64-cross (11.2.0-5cross1) ... Setting up libc6-dev-amd64-cross (2.32-1cross4) ... Setting up libreadline8:arm64 (8.1-2) ... Setting up libtsan0-amd64-cross (11.2.0-5cross1) ... Setting up libldap-2.4-2:arm64 (2.4.59+dfsg-1) ... Setting up cpp-10-x86-64-linux-gnu (10.3.0-8cross1) ... Setting up m4 (1.4.18-5) ... Setting up libgomp1-amd64-cross (11.2.0-5cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libitm1-amd64-cross (11.2.0-5cross1) ... Setting up libatomic1-amd64-cross (11.2.0-5cross1) ... Setting up libquadmath0-amd64-cross (11.2.0-5cross1) ... Setting up libubsan1-amd64-cross (11.2.0-5cross1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up gpgconf (2.2.27-2) ... Setting up gpg (2.2.27-2) ... Setting up gnupg-utils (2.2.27-2) ... Setting up cpp-x86-64-linux-gnu (4:10.2.1-1) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gpg-agent (2.2.27-2) ... Setting up libgcc-10-dev-amd64-cross (10.3.0-8cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up gpgsm (2.2.27-2) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-autoreconf (20) ... Setting up dirmngr (2.2.27-2) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gpg-wks-server (2.2.27-2) ... Setting up gcc-10-x86-64-linux-gnu (10.3.0-8cross1) ... Setting up libstdc++-10-dev-amd64-cross (10.3.0-8cross1) ... Setting up gcc-x86-64-linux-gnu (4:10.2.1-1) ... Setting up gpg-wks-client (2.2.27-2) ... Setting up debhelper (13.5.2) ... Setting up g++-10-x86-64-linux-gnu (10.3.0-8cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gnupg (2.2.27-2) ... Setting up g++-x86-64-linux-gnu (4:10.2.1-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-amd64 (12.9) ... Setting up libgcc-s1:amd64 (11.2.0-8) ... Setting up libc6:amd64 (2.32-4) ... Setting up libstdc++6:amd64 (11.2.0-8) ... Setting up liblsan0:amd64 (11.2.0-8) ... Setting up libitm1:amd64 (11.2.0-8) ... Setting up libtsan0:amd64 (11.2.0-8) ... Setting up libkeyutils1:amd64 (1.6.1-2) ... Setting up libgpg-error0:amd64 (1.42-3) ... Setting up libssl1.1:amd64 (1.1.1l-1) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-2) ... Setting up libcrypt1:amd64 (1:4.4.25-2) ... Setting up libcom-err2:amd64 (1.46.4-1) ... Setting up libassuan0:amd64 (2.5.5-1) ... Setting up libgomp1:amd64 (11.2.0-8) ... Setting up libgpgme11:amd64 (1.16.0-1.1) ... Setting up libasan6:amd64 (11.2.0-8) ... Setting up libkrb5support0:amd64 (1.18.3-7) ... Setting up libnettle8:amd64 (3.7.3-1) ... Setting up libgmp10:amd64 (2:6.2.1+dfsg-2) ... Setting up libquadmath0:amd64 (11.2.0-8) ... Setting up libatomic1:amd64 (11.2.0-8) ... Setting up libk5crypto3:amd64 (1.18.3-7) ... Setting up libubsan1:amd64 (11.2.0-8) ... Setting up libcrypt-dev:amd64 (1:4.4.25-2) ... Setting up libkrb5-3:amd64 (1.18.3-7) ... Setting up libmaus2-2:amd64 (2.0.803+dfsg-1) ... Setting up libgcc-10-dev:amd64 (10.3.0-11) ... Setting up libgssapi-krb5-2:amd64 (1.18.3-7) ... Setting up libtirpc3:amd64 (1.3.2-2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.32-4) ... Setting up libstdc++-10-dev:amd64 (10.3.0-11) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up libmaus2-dev:amd64 (2.0.803+dfsg-1) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-10_10.3.0-11 gcc-10_10.3.0-11 libc6-dev_2.32-4 libstdc++-10-dev_10.3.0-11 libstdc++-10-dev-amd64-cross_10.3.0-8cross1 libstdc++6_11.2.0-8 libstdc++6-amd64-cross_11.2.0-5cross1 linux-libc-dev_5.14.6-3 Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b1 binutils_2.37-7 binutils-aarch64-linux-gnu_2.37-7 binutils-common_2.37-7 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-3 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1 cpp-10_10.3.0-11 cpp-10-x86-64-linux-gnu_10.3.0-8cross1 cpp-x86-64-linux-gnu_4:10.2.1-1 cross-config_2.6.18+nmu2 crossbuild-essential-amd64_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 fakeroot_1.26-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.3.0-11 g++-10-x86-64-linux-gnu_10.3.0-8cross1 g++-x86-64-linux-gnu_4:10.2.1-1 gcc_4:10.2.1-1 gcc-10_10.3.0-11 gcc-10-base_10.3.0-11 gcc-10-cross-base_10.3.0-8cross1 gcc-10-x86-64-linux-gnu_10.3.0-8cross1 gcc-10-x86-64-linux-gnu-base_10.3.0-8cross1 gcc-11-base_11.2.0-8 gcc-11-cross-base_11.2.0-5cross1 gcc-x86-64-linux-gnu_4:10.2.1-1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-8 libasan6-amd64-cross_11.2.0-5cross1 libassuan0_2.5.5-1 libatomic1_11.2.0-8 libatomic1-amd64-cross_11.2.0-5cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-7 libblkid1_2.37.2-3 libbz2-1.0_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-amd64-cross_2.32-1cross4 libc6-dev_2.32-4 libc6-dev-amd64-cross_2.32-1cross4 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-8 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.20.9 libelf1_0.185-2 libfakeroot_1.26-1 libffi8_3.4.2-2 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.3.0-11 libgcc-10-dev-amd64-cross_10.3.0-8cross1 libgcc-s1_11.2.0-8 libgcc-s1-amd64-cross_11.2.0-5cross1 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libglib2.0-0_2.70.0-1+b1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-8 libgomp1-amd64-cross_11.2.0-5cross1 libgpg-error0_1.42-3 libgpgme11_1.16.0-1.1 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl23_0.23-1 libitm1_11.2.0-8 libitm1-amd64-cross_11.2.0-5cross1 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-8 liblsan0-amd64-cross_11.2.0-5cross1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmaus2-2_2.0.803+dfsg-1 libmaus2-dev_2.0.803+dfsg-1 libmount1_2.37.2-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20210905-1 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2+b1 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libquadmath0_11.2.0-8 libquadmath0-amd64-cross_11.2.0-5cross1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-3 libsqlite3-0_3.36.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11 libstdc++-10-dev-amd64-cross_10.3.0-8cross1 libstdc++6_11.2.0-8 libstdc++6-amd64-cross_11.2.0-5cross1 libsub-override-perl_0.09-2 libsystemd0_247.9-3 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-8 libtsan0-amd64-cross_11.2.0-5cross1 libubsan1_11.2.0-8 libubsan1-amd64-cross_11.2.0-5cross1 libuchardet0_0.0.7-1 libudev1_247.9-3 libunistring2_0.9.10-6 libuuid1_2.37.2-3 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.14.6-3 linux-libc-dev-amd64-cross_5.10.46-4cross4 login_1:4.8.1-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-3 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021b-1 ucf_3.0043 util-linux_2.37.2-3 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biobambam2 Binary: biobambam2 Architecture: any Version: 2.0.183+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://gitlab.com/german.tischler/biobambam2 Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/biobambam2 Vcs-Git: https://salsa.debian.org/med-team/biobambam2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), pkg-config, libmaus2-dev (>= 2.0.800) Package-List: biobambam2 deb science optional arch=any Checksums-Sha1: 935ba155699d68b2a8a42af3643f537acffcf7fb 248740 biobambam2_2.0.183+ds.orig.tar.xz 7dd2701a6207686369e95c719e6a428793b539b9 1032164 biobambam2_2.0.183+ds-1.debian.tar.xz Checksums-Sha256: d1f17f8e23473b85349e2d1e080634b0594db4f891bc39b30c1e2c4aa08d922a 248740 biobambam2_2.0.183+ds.orig.tar.xz cc290dbd334b0635dea0eb5be54c9810fe2730f8b22b42d6ed4bdbf1ab758717 1032164 biobambam2_2.0.183+ds-1.debian.tar.xz Files: b6c323def2a2ea03c87069b150f75069 248740 biobambam2_2.0.183+ds.orig.tar.xz 70c6f8c480af9b86165cef05243bba73 1032164 biobambam2_2.0.183+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmElTXAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdr3rRAAhEsqSvcLWm2fTNOuf7qJHn21avxC yCi3d0hUAaC06zPFtClRtuCs5r/8xHgBdKMRGT5hCh/m7xaZyxCY5hyTQ1SuZfbC u+/f7lQCVKtEsoyFJkebiaJ1usd0QhOtyVA7W6j1FYag6x20JSHhTFgj3z4Sz/2w 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extracting biobambam2 in /<> dpkg-source: info: unpacking biobambam2_2.0.183+ds.orig.tar.xz dpkg-source: info: unpacking biobambam2_2.0.183+ds-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-3febd5bb-e286-41ad-95aa-bbc49fccb0e3 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package biobambam2 dpkg-buildpackage: info: source version 2.0.183+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f config.log make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:2: warning: The macro `AC_CANONICAL_SYSTEM' is obsolete. configure.ac:2: You should run autoupdate. ./lib/autoconf/general.m4:2081: AC_CANONICAL_SYSTEM is expanded from... configure.ac:2: the top level configure.ac:3: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:3: You should run autoupdate. m4/libtool.m4:99: AC_PROG_LIBTOOL is expanded from... configure.ac:3: the top level configure.ac:6: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:6: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:1017: AM_CONFIG_HEADER is expanded from... configure.ac:6: the top level configure.ac:9: warning: The macro `AC_CANONICAL_SYSTEM' is obsolete. configure.ac:9: You should run autoupdate. ./lib/autoconf/general.m4:2081: AC_CANONICAL_SYSTEM is expanded from... configure.ac:9: the top level configure.ac:68: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:68: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:68: the top level configure.ac:147: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:147: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:147: the top level configure.ac:464: warning: AC_OUTPUT should be used without arguments. configure.ac:464: You should run autoupdate. configure.ac:3: installing './compile' configure.ac:2: installing './config.guess' configure.ac:2: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.amd64 checking build system type... aarch64-unknown-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to enable C11 features... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-linux-gnu-gcc... /usr/x86_64-linux-gnu/bin/ld checking if the linker (/usr/x86_64-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-linux-gnu-objdump... x86_64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-linux-gnu-ar... x86_64-linux-gnu-ar checking for archiver @FILE support... @ checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for x86_64-linux-gnu-ranlib... x86_64-linux-gnu-ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/x86_64-linux-gnu-nm -B output from x86_64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-gcc static flag -static works... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-gcc linker (/usr/x86_64-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-linux-gnu-strip... (cached) x86_64-linux-gnu-strip checking for a race-free mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of x86_64-linux-gnu-gcc... none checking whether we are cross compiling... yes checking for x86_64-linux-gnu-gcc... (cached) x86_64-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether x86_64-linux-gnu-gcc accepts -g... (cached) yes checking for x86_64-linux-gnu-gcc option to enable C11 features... (cached) none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... (cached) yes checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking for x86_64-linux-gnu-g++ option to enable C++11 features... none needed checking how to run the C++ preprocessor... x86_64-linux-gnu-g++ -E checking for ld used by x86_64-linux-gnu-g++... /usr/x86_64-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-linux-gnu-g++ linker (/usr/x86_64-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-g++ static flag -static works... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-g++ linker (/usr/x86_64-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of x86_64-linux-gnu-g++... none checking whether the C++ compiler supports the -fsanitize=address flag... yes configure: Adding optimisation options to C compiler x86_64-linux-gnu-gcc flags, full list now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security configure: Adding optimisation options to C++ compiler x86_64-linux-gnu-g++ flags, full list now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security checking for x86_64-linux-gnu-pkg-config... /usr/bin/x86_64-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for egrep... (cached) /bin/grep -E checking for libmaus2 >= 2.0.800... yes checking whether we can compile a program using libmaus2... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE... yes checking whether libmaus2 has support for io_lib... no checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for xerces-c >= 3.1.1... no configure: Using flags -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C compiler x86_64-linux-gnu-gcc configure: Using flags -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C++ compiler x86_64-linux-gnu-g++ checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/biobambam2/BamBamConfig.hpp config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtofastq-bamtofastq.o `test -f 'programs/bamtofastq.cpp' || echo './'`programs/bamtofastq.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtofastq-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicates-bammarkduplicates.o `test -f 'programs/bammarkduplicates.cpp' || echo './'`programs/bammarkduplicates.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsort-bamsort.o `test -f 'programs/bamsort.cpp' || echo './'`programs/bamsort.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammaskflags-bammaskflags.o `test -f 'programs/bammaskflags.cpp' || echo './'`programs/bammaskflags.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammaskflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrecompress-bamrecompress.o `test -f 'programs/bamrecompress.cpp' || echo './'`programs/bamrecompress.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrecompress-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterfind-bamadapterfind.o `test -f 'programs/bamadapterfind.cpp' || echo './'`programs/bamadapterfind.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilteraux-bamfilteraux.o `test -f 'programs/bamfilteraux.cpp' || echo './'`programs/bamfilteraux.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilteraux-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxsort-bamauxsort.o `test -f 'programs/bamauxsort.cpp' || echo './'`programs/bamauxsort.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterclip-bamadapterclip.o `test -f 'programs/bamadapterclip.cpp' || echo './'`programs/bamadapterclip.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterclip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterclip-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo 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-fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamindex-bamindex.o `test -f 'programs/bamindex.cpp' || echo './'`programs/bamindex.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamindex-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix 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|| echo './'`programs/bammerge.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bammerge programs/bammerge-bammerge.o biobambam2/bammerge-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o 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-DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamintervalcommenthist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamintervalcommenthist programs/bamintervalcommenthist-bamintervalcommenthist.o biobambam2/bamintervalcommenthist-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamintervalcommenthist programs/bamintervalcommenthist-bamintervalcommenthist.o biobambam2/bamintervalcommenthist-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o `test -f 'programs/bamstreamingmarkduplicates.cpp' || echo './'`programs/bamstreamingmarkduplicates.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamstreamingmarkduplicates-Licensing.o `test -f 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programs/bamfilternames-bamfilternames.o `test -f 'programs/bamfilternames.cpp' || echo './'`programs/bamfilternames.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilternames-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamfilternames programs/bamfilternames-bamfilternames.o biobambam2/bamfilternames-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 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programs/bamexploderef-bamexploderef.o biobambam2/bamexploderef-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastexploderef-bamfastexploderef.o `test -f 'programs/bamfastexploderef.cpp' || echo './'`programs/bamfastexploderef.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastexploderef-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ 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-I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamranksort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamranksort programs/bamranksort-bamranksort.o biobambam2/bamranksort-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamranksort programs/bamranksort-bamranksort.o biobambam2/bamranksort-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastaexplod-fastaexplod.o `test -f 'programs/fastaexplod.cpp' || echo './'`programs/fastaexplod.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastaexplod-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 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biobambam2/bamfillquery-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfillquery-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamfillquery programs/bamfillquery-bamfillquery.o biobambam2/bamfillquery-Licensing.o biobambam2/bamfillquery-AttachRank.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 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|| echo './'`biobambam2/KmerPoisson.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobam2-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o fastqtobam2 programs/fastqtobam2-fastqtobam2.o biobambam2/fastqtobam2-Licensing.o biobambam2/fastqtobam2-KmerPoisson.o biobambam2/fastqtobam2-RunEOFFilter.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. 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biobambam2/bamauxmerge2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxmerge2-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamauxmerge2 programs/bamauxmerge2-bamauxmerge2.o biobambam2/bamauxmerge2-Licensing.o biobambam2/bamauxmerge2-KmerPoisson.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g 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biobambam2/bamreheader-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-UpdateNumericalIndex.o `test -f 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biobambam2/bamreheader-ReadHeader.o biobambam2/bamreheader-RunEOFFilter.o biobambam2/bamreheader-UpdateNumericalIndex.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreplacechecksums-bamreplacechecksums.o `test -f 'programs/bamreplacechecksums.cpp' || echo './'`programs/bamreplacechecksums.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp /bin/bash ../libtool 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biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastcat-bamfastcat.o `test -f 'programs/bamfastcat.cpp' || echo './'`programs/bamfastcat.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamfastcat programs/bamfastcat-bamfastcat.o biobambam2/bamfastcat-Licensing.o biobambam2/bamfastcat-ReadHeader.o biobambam2/bamfastcat-RunEOFFilter.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception 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biobambam2/bamdepth-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepth-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamdepth programs/bamdepth-bamdepth.o biobambam2/bamdepth-Licensing.o biobambam2/bamdepth-DepthInterval.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 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biobambam2/bamdepthintersect-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepthintersect-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamdepthintersect programs/bamdepthintersect-bamdepthintersect.o biobambam2/bamdepthintersect-Licensing.o biobambam2/bamdepthintersect-DepthInterval.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp 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`test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamsimpledepth programs/bamsimpledepth-bamsimpledepth.o biobambam2/bamsimpledepth-Licensing.o biobambam2/bamsimpledepth-DepthInterval.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsimpledepth programs/bamsimpledepth-bamsimpledepth.o biobambam2/bamsimpledepth-Licensing.o biobambam2/bamsimpledepth-DepthInterval.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 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programs/bamcountflags-bamcountflags.o `test -f 'programs/bamcountflags.cpp' || echo './'`programs/bamcountflags.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcountflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamcountflags programs/bamcountflags-bamcountflags.o biobambam2/bamcountflags-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. 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biobambam2/vcffilterfilterflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o vcffilterfilterflags programs/vcffilterfilterflags-vcffilterfilterflags.o biobambam2/vcffilterfilterflags-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcffilterfilterflags programs/vcffilterfilterflags-vcffilterfilterflags.o biobambam2/vcffilterfilterflags-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 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-lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastaselectreg programs/fastaselectreg-fastaselectreg.o biobambam2/fastaselectreg-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamaddne-bamaddne.o `test -f 'programs/bamaddne.cpp' || echo './'`programs/bamaddne.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamaddne-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamaddne programs/bamaddne-bamaddne.o biobambam2/bamaddne-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamaddne programs/bamaddne-bamaddne.o biobambam2/bamaddne-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterhistogram-bamadapterhistogram.o `test -f 'programs/bamadapterhistogram.cpp' || echo './'`programs/bamadapterhistogram.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterhistogram-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamadapterhistogram programs/bamadapterhistogram-bamadapterhistogram.o biobambam2/bamadapterhistogram-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamadapterhistogram programs/bamadapterhistogram-bamadapterhistogram.o biobambam2/bamadapterhistogram-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsalvage-bamsalvage.o `test -f 'programs/bamsalvage.cpp' || echo './'`programs/bamsalvage.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsalvage-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamsalvage programs/bamsalvage-bamsalvage.o biobambam2/bamsalvage-Licensing.o -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -fopenmp -lz libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsalvage programs/bamsalvage-bamsalvage.o biobambam2/bamsalvage-Licensing.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -ldl -lz -fopenmp make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/biobambam2/ -a make -j1 install DESTDIR=/<>/biobambam2-2.0.183\+ds/debian/biobambam2 AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/biobambam2/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c bamtofastq bammarkduplicates bamsort bammaskflags bamrecompress bamadapterfind bamfilteraux bamauxsort bamadapterclip bamcollate2 bam12auxmerge bam12split bam12strip bamreset bamrank bamclipreinsert bamclipXT bamzztoname bamindex bamfilterflags bamfilterrg bamdownsamplerandom bammarkduplicates2 bamcat bammerge bamsplit bamfastsplit bamsplitdiv bamchecksort fastqtobam bamfixmateinformation bamseqchksum normalisefasta bamfilterheader bamfilterheader2 bammdnm bammapdist bamvalidate bamflagsplit bamintervalcomment bamintervalcommenthist bamstreamingmarkduplicates bamalignfrac bamfilternames bamsormadup bamexplode bamexploderef bamfastexploderef bamfastnumextract bamranksort fastaexplod bamrecalculatecigar bamfiltermc bamnumericalindex bamnumericalindexstats bammarkduplicatesopt bamfilterlength bamauxmerge bamrefinterval bamscrapcount bamfilterrefid bamfillquery bamrefextract fastqtobam2 bamauxmerge2 bamreheader bamreplacechecksums bamfastcat populaterefcache bamfiltereofblocks bamdepth bamdepthintersect bamfilterk bamfixpairinfo bamdifference bamfeaturecount '/<>/debian/biobambam2/usr/bin' libtool: install: /usr/bin/install -c bamtofastq /<>/debian/biobambam2/usr/bin/bamtofastq libtool: install: /usr/bin/install -c bammarkduplicates /<>/debian/biobambam2/usr/bin/bammarkduplicates libtool: install: /usr/bin/install -c bamsort /<>/debian/biobambam2/usr/bin/bamsort libtool: install: /usr/bin/install -c bammaskflags /<>/debian/biobambam2/usr/bin/bammaskflags libtool: install: /usr/bin/install -c bamrecompress /<>/debian/biobambam2/usr/bin/bamrecompress libtool: install: /usr/bin/install -c bamadapterfind /<>/debian/biobambam2/usr/bin/bamadapterfind libtool: install: /usr/bin/install -c bamfilteraux /<>/debian/biobambam2/usr/bin/bamfilteraux libtool: install: /usr/bin/install -c bamauxsort /<>/debian/biobambam2/usr/bin/bamauxsort libtool: install: /usr/bin/install -c bamadapterclip /<>/debian/biobambam2/usr/bin/bamadapterclip libtool: install: /usr/bin/install -c bamcollate2 /<>/debian/biobambam2/usr/bin/bamcollate2 libtool: install: /usr/bin/install -c bam12auxmerge /<>/debian/biobambam2/usr/bin/bam12auxmerge libtool: install: /usr/bin/install -c bam12split /<>/debian/biobambam2/usr/bin/bam12split libtool: install: /usr/bin/install -c bam12strip /<>/debian/biobambam2/usr/bin/bam12strip libtool: install: /usr/bin/install -c bamreset /<>/debian/biobambam2/usr/bin/bamreset libtool: install: /usr/bin/install -c bamrank /<>/debian/biobambam2/usr/bin/bamrank libtool: install: /usr/bin/install -c bamclipreinsert /<>/debian/biobambam2/usr/bin/bamclipreinsert libtool: install: /usr/bin/install -c bamclipXT /<>/debian/biobambam2/usr/bin/bamclipXT libtool: install: /usr/bin/install -c bamzztoname /<>/debian/biobambam2/usr/bin/bamzztoname libtool: install: /usr/bin/install -c bamindex /<>/debian/biobambam2/usr/bin/bamindex libtool: install: /usr/bin/install -c bamfilterflags /<>/debian/biobambam2/usr/bin/bamfilterflags libtool: install: /usr/bin/install -c bamfilterrg /<>/debian/biobambam2/usr/bin/bamfilterrg libtool: install: /usr/bin/install -c bamdownsamplerandom /<>/debian/biobambam2/usr/bin/bamdownsamplerandom libtool: install: /usr/bin/install -c bammarkduplicates2 /<>/debian/biobambam2/usr/bin/bammarkduplicates2 libtool: install: /usr/bin/install -c bamcat /<>/debian/biobambam2/usr/bin/bamcat libtool: install: /usr/bin/install -c bammerge /<>/debian/biobambam2/usr/bin/bammerge libtool: install: /usr/bin/install -c bamsplit /<>/debian/biobambam2/usr/bin/bamsplit libtool: install: /usr/bin/install -c bamfastsplit /<>/debian/biobambam2/usr/bin/bamfastsplit libtool: install: /usr/bin/install -c bamsplitdiv /<>/debian/biobambam2/usr/bin/bamsplitdiv libtool: install: /usr/bin/install -c bamchecksort /<>/debian/biobambam2/usr/bin/bamchecksort libtool: install: /usr/bin/install -c fastqtobam /<>/debian/biobambam2/usr/bin/fastqtobam libtool: install: /usr/bin/install -c bamfixmateinformation /<>/debian/biobambam2/usr/bin/bamfixmateinformation libtool: install: /usr/bin/install -c bamseqchksum /<>/debian/biobambam2/usr/bin/bamseqchksum libtool: install: /usr/bin/install -c normalisefasta /<>/debian/biobambam2/usr/bin/normalisefasta libtool: install: /usr/bin/install -c bamfilterheader /<>/debian/biobambam2/usr/bin/bamfilterheader libtool: install: /usr/bin/install -c bamfilterheader2 /<>/debian/biobambam2/usr/bin/bamfilterheader2 libtool: install: /usr/bin/install -c bammdnm /<>/debian/biobambam2/usr/bin/bammdnm libtool: install: /usr/bin/install -c bammapdist /<>/debian/biobambam2/usr/bin/bammapdist libtool: install: /usr/bin/install -c bamvalidate /<>/debian/biobambam2/usr/bin/bamvalidate libtool: install: /usr/bin/install -c bamflagsplit /<>/debian/biobambam2/usr/bin/bamflagsplit libtool: install: /usr/bin/install -c bamintervalcomment /<>/debian/biobambam2/usr/bin/bamintervalcomment libtool: install: /usr/bin/install -c bamintervalcommenthist /<>/debian/biobambam2/usr/bin/bamintervalcommenthist libtool: install: /usr/bin/install -c bamstreamingmarkduplicates /<>/debian/biobambam2/usr/bin/bamstreamingmarkduplicates libtool: install: /usr/bin/install -c bamalignfrac /<>/debian/biobambam2/usr/bin/bamalignfrac libtool: install: /usr/bin/install -c bamfilternames /<>/debian/biobambam2/usr/bin/bamfilternames libtool: install: /usr/bin/install -c bamsormadup /<>/debian/biobambam2/usr/bin/bamsormadup libtool: install: /usr/bin/install -c bamexplode /<>/debian/biobambam2/usr/bin/bamexplode libtool: install: /usr/bin/install -c bamexploderef /<>/debian/biobambam2/usr/bin/bamexploderef libtool: install: /usr/bin/install -c bamfastexploderef /<>/debian/biobambam2/usr/bin/bamfastexploderef libtool: install: /usr/bin/install -c bamfastnumextract /<>/debian/biobambam2/usr/bin/bamfastnumextract libtool: install: /usr/bin/install -c bamranksort /<>/debian/biobambam2/usr/bin/bamranksort libtool: install: /usr/bin/install -c fastaexplod /<>/debian/biobambam2/usr/bin/fastaexplod libtool: install: /usr/bin/install -c bamrecalculatecigar /<>/debian/biobambam2/usr/bin/bamrecalculatecigar libtool: install: /usr/bin/install -c bamfiltermc /<>/debian/biobambam2/usr/bin/bamfiltermc libtool: install: /usr/bin/install -c bamnumericalindex /<>/debian/biobambam2/usr/bin/bamnumericalindex libtool: install: /usr/bin/install -c bamnumericalindexstats /<>/debian/biobambam2/usr/bin/bamnumericalindexstats libtool: install: /usr/bin/install -c bammarkduplicatesopt /<>/debian/biobambam2/usr/bin/bammarkduplicatesopt libtool: install: /usr/bin/install -c bamfilterlength /<>/debian/biobambam2/usr/bin/bamfilterlength libtool: install: /usr/bin/install -c bamauxmerge /<>/debian/biobambam2/usr/bin/bamauxmerge libtool: install: /usr/bin/install -c bamrefinterval /<>/debian/biobambam2/usr/bin/bamrefinterval libtool: install: /usr/bin/install -c bamscrapcount /<>/debian/biobambam2/usr/bin/bamscrapcount libtool: install: /usr/bin/install -c bamfilterrefid /<>/debian/biobambam2/usr/bin/bamfilterrefid libtool: install: /usr/bin/install -c bamfillquery /<>/debian/biobambam2/usr/bin/bamfillquery libtool: install: /usr/bin/install -c bamrefextract /<>/debian/biobambam2/usr/bin/bamrefextract libtool: install: /usr/bin/install -c fastqtobam2 /<>/debian/biobambam2/usr/bin/fastqtobam2 libtool: install: /usr/bin/install -c bamauxmerge2 /<>/debian/biobambam2/usr/bin/bamauxmerge2 libtool: install: /usr/bin/install -c bamreheader /<>/debian/biobambam2/usr/bin/bamreheader libtool: install: /usr/bin/install -c bamreplacechecksums /<>/debian/biobambam2/usr/bin/bamreplacechecksums libtool: install: /usr/bin/install -c bamfastcat /<>/debian/biobambam2/usr/bin/bamfastcat libtool: install: /usr/bin/install -c populaterefcache /<>/debian/biobambam2/usr/bin/populaterefcache libtool: install: /usr/bin/install -c bamfiltereofblocks /<>/debian/biobambam2/usr/bin/bamfiltereofblocks libtool: install: /usr/bin/install -c bamdepth /<>/debian/biobambam2/usr/bin/bamdepth libtool: install: /usr/bin/install -c bamdepthintersect /<>/debian/biobambam2/usr/bin/bamdepthintersect libtool: install: /usr/bin/install -c bamfilterk /<>/debian/biobambam2/usr/bin/bamfilterk libtool: install: /usr/bin/install -c bamfixpairinfo /<>/debian/biobambam2/usr/bin/bamfixpairinfo libtool: install: /usr/bin/install -c bamdifference /<>/debian/biobambam2/usr/bin/bamdifference libtool: install: /usr/bin/install -c bamfeaturecount /<>/debian/biobambam2/usr/bin/bamfeaturecount /bin/mkdir -p '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/bamtofastq.1 programs/bamsort.1 programs/bammarkduplicates.1 programs/bammarkduplicatesopt.1 programs/bammaskflags.1 programs/bamrecompress.1 programs/bamadapterfind.1 programs/bamfilteraux.1 programs/bamauxsort.1 programs/bamadapterclip.1 programs/bamcollate2.1 programs/bam12auxmerge.1 programs/bam12split.1 programs/bam12strip.1 programs/bamreset.1 programs/bamrank.1 programs/bamclipreinsert.1 programs/bamzztoname.1 programs/bamindex.1 programs/bamfilterflags.1 programs/bamfilterrg.1 programs/bamdownsamplerandom.1 programs/bammarkduplicates2.1 programs/bamcat.1 programs/bammerge.1 programs/bamsplit.1 programs/bamsplitdiv.1 programs/bamchecksort.1 programs/fastqtobam.1 programs/bamfixmateinformation.1 programs/normalisefasta.1 programs/bamfilterheader.1 programs/bamfilterheader2.1 programs/bammdnm.1 programs/bamseqchksum.1 programs/bamvalidate.1 programs/bamflagsplit.1 programs/bamintervalcomment.1 programs/bamstreamingmarkduplicates.1 programs/bamsormadup.1 '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/fastaexplod.1 programs/bamrecalculatecigar.1 programs/bamfiltermc.1 programs/bamfillquery.1 programs/bamalignfrac.1 programs/bamauxmerge.1 programs/bamauxmerge2.1 programs/bambisect.1 programs/bamclipXT.1 programs/bamconsensus.1 programs/filtergtf.1 programs/bamfeaturecount.1 '/<>/debian/biobambam2/usr/share/man/man1' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamfiltereofblocks debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/fastqtobam2 debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/bamreheader debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bamfastexploderef debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamfastnumextract debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamreplacechecksums debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamdepthintersect debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamnumericalindexstats debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamauxmerge debian/biobambam2/usr/bin/bamfixpairinfo debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamfeaturecount debian/biobambam2/usr/bin/bamdifference debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamauxmerge2 debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamfastsplit debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bamfilterk debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamzztoname debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamexploderef debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/populaterefcache debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamdepth debian/biobambam2/usr/bin/bamclipXT debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/fastaexplod debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamfastcat debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamtofastq were not linked against libmaus2_simd_align_128.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamfiltereofblocks debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/fastqtobam2 debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/bamreheader debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bamfastexploderef debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamfastnumextract debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamreplacechecksums debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamdepthintersect debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamnumericalindexstats debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamauxmerge debian/biobambam2/usr/bin/bamfixpairinfo debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamfeaturecount debian/biobambam2/usr/bin/bamdifference debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamauxmerge2 debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamfastsplit debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bamfilterk debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamzztoname debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamexploderef debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/populaterefcache debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamdepth debian/biobambam2/usr/bin/bamclipXT debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/fastaexplod debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamfastcat debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamtofastq were not linked against libmaus2_simd_align_256.so.2 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'biobambam2' in '../biobambam2_2.0.183+ds-1_amd64.deb'. dpkg-deb: building package 'biobambam2-dbgsym' in '../biobambam2-dbgsym_2.0.183+ds-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../biobambam2_2.0.183+ds-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-01T03:48:35Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ biobambam2_2.0.183+ds-1_amd64.changes: -------------------------------------- Format: 1.8 Date: Tue, 24 Aug 2021 16:37:12 +0200 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 2.0.183+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: biobambam2 - tools for early stage alignment file processing Changes: biobambam2 (2.0.183+ds-1) unstable; urgency=medium . * New upstream version * all patches removed after application upstream * d/control: updated my uploader address * Standards-Version: 4.6.0 (routine-update) * d/control: build depends on libmaus2-dev (>= 2.0.800); fixes configure error at build time. Checksums-Sha1: 6a6aa7f5a62db06eab0cd8557aaf1ee9364394ed 207775428 biobambam2-dbgsym_2.0.183+ds-1_amd64.deb d4f44b041422e395800c9487ee53b00e00a4aaaf 6014 biobambam2_2.0.183+ds-1_amd64.buildinfo 688800c274925ae4f394fd49330202a61dcf18be 7884536 biobambam2_2.0.183+ds-1_amd64.deb Checksums-Sha256: 06a192f04450822fbd9e90fd1ff1af9f1a50077d04517b8f1b73f1e039f14a97 207775428 biobambam2-dbgsym_2.0.183+ds-1_amd64.deb 6331b4327611dd7a7604d369bbc5cef6d7e67e04a4446807073fcbffd2e407fc 6014 biobambam2_2.0.183+ds-1_amd64.buildinfo 10e259a88ba548f589f10ced11ebeca79e3b3fd69d6babafacba9848c308a305 7884536 biobambam2_2.0.183+ds-1_amd64.deb Files: 8bbc24bd7694dd74a2939df244159c90 207775428 debug optional biobambam2-dbgsym_2.0.183+ds-1_amd64.deb 113a8a6ada64f92aa507827a68f81bb5 6014 science optional biobambam2_2.0.183+ds-1_amd64.buildinfo ec1d84fc020ae7434121b2b426072722 7884536 science optional biobambam2_2.0.183+ds-1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Architecture: amd64 Version: 2.0.183+ds-1 Checksums-Md5: 8bbc24bd7694dd74a2939df244159c90 207775428 biobambam2-dbgsym_2.0.183+ds-1_amd64.deb ec1d84fc020ae7434121b2b426072722 7884536 biobambam2_2.0.183+ds-1_amd64.deb Checksums-Sha1: 6a6aa7f5a62db06eab0cd8557aaf1ee9364394ed 207775428 biobambam2-dbgsym_2.0.183+ds-1_amd64.deb 688800c274925ae4f394fd49330202a61dcf18be 7884536 biobambam2_2.0.183+ds-1_amd64.deb Checksums-Sha256: 06a192f04450822fbd9e90fd1ff1af9f1a50077d04517b8f1b73f1e039f14a97 207775428 biobambam2-dbgsym_2.0.183+ds-1_amd64.deb 10e259a88ba548f589f10ced11ebeca79e3b3fd69d6babafacba9848c308a305 7884536 biobambam2_2.0.183+ds-1_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Fri, 01 Oct 2021 03:48:29 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), autoconf (= 2.71-2), automake (= 1:1.16.4-2), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-3+b1), binutils (= 2.37-7), binutils-aarch64-linux-gnu (= 2.37-7), binutils-common (= 2.37-7), bsdextrautils (= 2.37.2-3), bsdutils (= 1:2.37.2-3), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4), cpp (= 4:10.2.1-1), cpp-10 (= 10.3.0-11), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.5.2), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dirmngr (= 2.2.27-2), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:10.2.1-1), g++-10 (= 10.3.0-11), gcc (= 4:10.2.1-1), gcc-10 (= 10.3.0-11), gcc-10-base (= 10.3.0-11), gcc-11-base (= 11.2.0-8), gettext (= 0.21-4), gettext-base (= 0.21-4), gnupg (= 2.2.27-2), gnupg-l10n (= 2.2.27-2), gnupg-utils (= 2.2.27-2), gpg (= 2.2.27-2), gpg-agent (= 2.2.27-2), gpg-wks-client (= 2.2.27-2), gpg-wks-server (= 2.2.27-2), gpgconf (= 2.2.27-2), gpgsm (= 2.2.27-2), gpgv (= 2.2.27-2), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-8), libassuan0 (= 2.5.5-1), libatomic1 (= 11.2.0-8), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.5-1), libaudit1 (= 1:3.0.5-1), libbinutils (= 2.37-7), libblkid1 (= 2.37.2-3), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.32-4), libc-dev-bin (= 2.32-4), libc6 (= 2.32-4), libc6-dev (= 2.32-4), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-8), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.25-2), libcrypt1 (= 1:4.4.25-2), libctf-nobfd0 (= 2.37-7), libctf0 (= 2.37-7), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.5.2), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libffi8 (= 3.4.2-2), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-10-dev (= 10.3.0-11), libgcc-s1 (= 11.2.0-8), libgcrypt20 (= 1.9.4-3+b1), libgdbm-compat4 (= 1.21-1), libgdbm6 (= 1.21-1), libglib2.0-0 (= 2.70.0-1+b1), libgmp10 (= 2:6.2.1+dfsg-2), libgnutls30 (= 3.7.2-2), libgomp1 (= 11.2.0-8), libgpg-error0 (= 1.42-3), libgpgme11 (= 1.16.0-1.1), libgssapi-krb5-2 (= 1.18.3-7), libhogweed6 (= 3.7.3-1), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.23-1), libitm1 (= 11.2.0-8), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), libksba8 (= 1.6.0-2), libldap-2.4-2 (= 2.4.59+dfsg-1), liblsan0 (= 11.2.0-8), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmaus2-2 (= 2.0.803+dfsg-1), libmaus2-dev (= 2.0.803+dfsg-1), libmount1 (= 2.37.2-3), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncursesw6 (= 6.2+20210905-1), libnettle8 (= 3.7.3-1), libnpth0 (= 1.6-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.0-2+b1), libpam-modules (= 1.4.0-10), libpam-modules-bin (= 1.4.0-10), libpam-runtime (= 1.4.0-10), libpam0g (= 1.4.0-10), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.3-1), libquadmath0 (= 11.2.0-8), libreadline8 (= 8.1-2), libsasl2-2 (= 2.1.27+dfsg-2.1), libsasl2-modules-db (= 2.1.27+dfsg-2.1), libseccomp2 (= 2.5.2-1), libselinux1 (= 3.1-3), libsemanage-common (= 3.1-1), libsemanage1 (= 3.1-1+b2), libsepol1 (= 3.1-1), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-3), libsqlite3-0 (= 3.36.0-2), libssl1.1 (= 1.1.1l-1), libstdc++-10-dev (= 10.3.0-11), libstdc++6 (= 11.2.0-8), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.9-3), libtasn1-6 (= 4.17.0-2), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-8), libubsan1 (= 11.2.0-8), libuchardet0 (= 0.0.7-1), libudev1 (= 247.9-3), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-3), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.14.6-3), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), passwd (= 1:4.8.1-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), pinentry-curses (= 1.1.0-4), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21+nmu1), readline-common (= 8.1-2), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.00-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-3), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1629815832" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ biobambam2-dbgsym_2.0.183+ds-1_amd64.deb ---------------------------------------- new Debian package, version 2.0. size 207775428 bytes: control archive=3980 bytes. 3470 bytes, 12 lines control 8143 bytes, 77 lines md5sums Package: biobambam2-dbgsym Source: biobambam2 Version: 2.0.183+ds-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 218181 Depends: biobambam2 (= 2.0.183+ds-1) Section: debug Priority: optional Description: debug symbols for biobambam2 Build-Ids: 048615e0ce4f8e2d9881a832907417f7746c7484 072b5e1844902a6759a3795abffc7c4e072cab60 07600f75ffa0a75fd1cf4ef7ca85d03283e3b210 0b0b5826ca22f79772f93fc082390d8ba569c8e2 0be7403c39db139c01211f13e8eb186b4cd56776 0e00c116de6d464d79ab27d290973e09763978f1 14f4dc941148cab188baceb882183f8d462e5ff4 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7884536 bytes: control archive=4336 bytes. 1284 bytes, 25 lines control 8885 bytes, 140 lines md5sums Package: biobambam2 Version: 2.0.183+ds-1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 52911 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libmaus2-2 (>= 2.0.803+dfsg), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://gitlab.com/german.tischler/biobambam2 Description: tools for early stage alignment file processing This package contains some tools for processing BAM files, including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name drwxr-xr-x root/root 0 2021-08-24 14:37 ./ drwxr-xr-x root/root 0 2021-08-24 14:37 ./usr/ drwxr-xr-x root/root 0 2021-08-24 14:37 ./usr/bin/ -rwxr-xr-x root/root 859496 2021-08-24 14:37 ./usr/bin/bam12auxmerge -rwxr-xr-x root/root 765288 2021-08-24 14:37 ./usr/bin/bam12split -rwxr-xr-x root/root 765288 2021-08-24 14:37 ./usr/bin/bam12strip -rwxr-xr-x root/root 781672 2021-08-24 14:37 ./usr/bin/bamadapterclip -rwxr-xr-x root/root 884072 2021-08-24 14:37 ./usr/bin/bamadapterfind -rwxr-xr-x root/root 691560 2021-08-24 14:37 ./usr/bin/bamalignfrac -rwxr-xr-x root/root 814440 2021-08-24 14:37 ./usr/bin/bamauxmerge -rwxr-xr-x root/root 506200 2021-08-24 14:37 ./usr/bin/bamauxmerge2 -rwxr-xr-x root/root 769384 2021-08-24 14:37 ./usr/bin/bamauxsort -rwxr-xr-x root/root 757096 2021-08-24 14:37 ./usr/bin/bamcat -rwxr-xr-x root/root 671080 2021-08-24 14:37 ./usr/bin/bamchecksort -rwxr-xr-x root/root 736616 2021-08-24 14:37 ./usr/bin/bamclipXT -rwxr-xr-x root/root 789864 2021-08-24 14:37 ./usr/bin/bamclipreinsert -rwxr-xr-x root/root 933224 2021-08-24 14:37 ./usr/bin/bamcollate2 -rwxr-xr-x root/root 683368 2021-08-24 14:37 ./usr/bin/bamdepth -rwxr-xr-x root/root 724328 2021-08-24 14:37 ./usr/bin/bamdepthintersect -rwxr-xr-x root/root 761192 2021-08-24 14:37 ./usr/bin/bamdifference -rwxr-xr-x root/root 879976 2021-08-24 14:37 ./usr/bin/bamdownsamplerandom -rwxr-xr-x root/root 728424 2021-08-24 14:37 ./usr/bin/bamexplode -rwxr-xr-x root/root 576872 2021-08-24 14:37 ./usr/bin/bamexploderef -rwxr-xr-x root/root 380256 2021-08-24 14:37 ./usr/bin/bamfastcat -rwxr-xr-x root/root 691560 2021-08-24 14:37 ./usr/bin/bamfastexploderef -rwxr-xr-x root/root 384360 2021-08-24 14:37 ./usr/bin/bamfastnumextract -rwxr-xr-x root/root 392552 2021-08-24 14:37 ./usr/bin/bamfastsplit -rwxr-xr-x root/root 1019328 2021-08-24 14:37 ./usr/bin/bamfeaturecount -rwxr-xr-x root/root 822632 2021-08-24 14:37 ./usr/bin/bamfillquery -rwxr-xr-x root/root 765288 2021-08-24 14:37 ./usr/bin/bamfilteraux -rwxr-xr-x root/root 43344 2021-08-24 14:37 ./usr/bin/bamfiltereofblocks -rwxr-xr-x root/root 818536 2021-08-24 14:37 ./usr/bin/bamfilterflags -rwxr-xr-x root/root 806248 2021-08-24 14:37 ./usr/bin/bamfilterheader -rwxr-xr-x root/root 194896 2021-08-24 14:37 ./usr/bin/bamfilterheader2 -rwxr-xr-x root/root 769384 2021-08-24 14:37 ./usr/bin/bamfilterk -rwxr-xr-x root/root 798056 2021-08-24 14:37 ./usr/bin/bamfilterlength -rwxr-xr-x root/root 806248 2021-08-24 14:37 ./usr/bin/bamfiltermc -rwxr-xr-x root/root 765288 2021-08-24 14:37 ./usr/bin/bamfilternames -rwxr-xr-x root/root 765288 2021-08-24 14:37 ./usr/bin/bamfilterrefid -rwxr-xr-x root/root 765288 2021-08-24 14:37 ./usr/bin/bamfilterrg -rwxr-xr-x root/root 744808 2021-08-24 14:37 ./usr/bin/bamfixmateinformation -rwxr-xr-x root/root 802152 2021-08-24 14:37 ./usr/bin/bamfixpairinfo -rwxr-xr-x root/root 740712 2021-08-24 14:37 ./usr/bin/bamflagsplit -rwxr-xr-x root/root 231760 2021-08-24 14:37 ./usr/bin/bamindex -rwxr-xr-x root/root 867688 2021-08-24 14:37 ./usr/bin/bamintervalcomment -rwxr-xr-x root/root 683368 2021-08-24 14:37 ./usr/bin/bamintervalcommenthist -rwxr-xr-x root/root 683368 2021-08-24 14:37 ./usr/bin/bammapdist -rwxr-xr-x root/root 1043816 2021-08-24 14:37 ./usr/bin/bammarkduplicates -rwxr-xr-x root/root 1080680 2021-08-24 14:37 ./usr/bin/bammarkduplicates2 -rwxr-xr-x root/root 1146216 2021-08-24 14:37 ./usr/bin/bammarkduplicatesopt -rwxr-xr-x root/root 769384 2021-08-24 14:37 ./usr/bin/bammaskflags -rwxr-xr-x root/root 391504 2021-08-24 14:37 ./usr/bin/bammdnm -rwxr-xr-x root/root 806248 2021-08-24 14:37 ./usr/bin/bammerge -rwxr-xr-x root/root 170320 2021-08-24 14:37 ./usr/bin/bamnumericalindex -rwxr-xr-x root/root 339304 2021-08-24 14:37 ./usr/bin/bamnumericalindexstats -rwxr-xr-x root/root 765288 2021-08-24 14:37 ./usr/bin/bamrank -rwxr-xr-x root/root 744808 2021-08-24 14:37 ./usr/bin/bamranksort -rwxr-xr-x root/root 822632 2021-08-24 14:37 ./usr/bin/bamrecalculatecigar -rwxr-xr-x root/root 305496 2021-08-24 14:37 ./usr/bin/bamrecompress -rwxr-xr-x root/root 720232 2021-08-24 14:37 ./usr/bin/bamrefextract -rwxr-xr-x root/root 793960 2021-08-24 14:37 ./usr/bin/bamrefinterval -rwxr-xr-x root/root 343400 2021-08-24 14:37 ./usr/bin/bamreheader -rwxr-xr-x root/root 347496 2021-08-24 14:37 ./usr/bin/bamreplacechecksums -rwxr-xr-x root/root 769384 2021-08-24 14:37 ./usr/bin/bamreset -rwxr-xr-x root/root 666984 2021-08-24 14:37 ./usr/bin/bamscrapcount -rwxr-xr-x root/root 720232 2021-08-24 14:37 ./usr/bin/bamseqchksum -rwxr-xr-x root/root 1809768 2021-08-24 14:37 ./usr/bin/bamsormadup -rwxr-xr-x root/root 1260904 2021-08-24 14:37 ./usr/bin/bamsort -rwxr-xr-x root/root 724328 2021-08-24 14:37 ./usr/bin/bamsplit -rwxr-xr-x root/root 691560 2021-08-24 14:37 ./usr/bin/bamsplitdiv 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./usr/share/man/man1/bamvalidate.1.gz -rw-r--r-- root/root 1088 2021-08-24 14:37 ./usr/share/man/man1/bamzztoname.1.gz -rw-r--r-- root/root 967 2021-08-24 14:37 ./usr/share/man/man1/fastaexplod.1.gz -rw-r--r-- root/root 2592 2021-08-24 14:37 ./usr/share/man/man1/fastqtobam.1.gz -rw-r--r-- root/root 671 2021-08-24 14:37 ./usr/share/man/man1/filtergtf.1.gz -rw-r--r-- root/root 1076 2021-08-24 14:37 ./usr/share/man/man1/normalisefasta.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [560 B] Get:5 copy:/<>/apt_archive ./ Packages [646 B] Fetched 2169 B in 0s (51.4 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat libaliased-perl libapt-pkg-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: liblist-someutils-xs-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat libaliased-perl libapt-pkg-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 5184 kB of archives. After this operation, 17.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://mirror.einval.org/debian sid/main arm64 diffstat arm64 1.64-1 [34.6 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 libapt-pkg-perl arm64 0.1.40 [69.4 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libb-hooks-op-check-perl arm64 0.22-1+b3 [11.2 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 libdevel-callchecker-perl arm64 0.008-1+b2 [15.8 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libparams-classify-perl arm64 0.015-1+b3 [25.5 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:13 http://mirror.einval.org/debian sid/main arm64 libvariable-magic-perl arm64 0.62-1+b3 [44.2 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:17 http://mirror.einval.org/debian sid/main arm64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 libclass-xsaccessor-perl arm64 1.19-3+b7 [36.9 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 libclone-perl arm64 0.45-1+b1 [15.3 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 libconfig-tiny-perl all 2.27-1 [17.1 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 libparams-util-perl arm64 1.102-1+b1 [25.3 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 libconst-fast-perl all 0.014-1.1 [8552 B] Get:26 http://mirror.einval.org/debian sid/main arm64 libcpanel-json-xs-perl arm64 4.26-1 [126 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-xs-perl arm64 0.430-2 [36.8 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libdata-messagepack-perl arm64 1.01-2 [34.3 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libdevel-size-perl arm64 0.83-1+b2 [25.8 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libemail-address-xs-perl arm64 1.04-1+b3 [26.7 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:43 http://mirror.einval.org/debian sid/main arm64 libtext-glob-perl all 0.11-1 [8888 B] Get:44 http://mirror.einval.org/debian sid/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:50 http://mirror.einval.org/debian sid/main arm64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-2 [60.4 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b1 [170 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-1+b3 [11.9 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b1 [13.5 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.19-1+b7 [17.0 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.008-1+b1 [11.8 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.611-1 [45.7 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.018+ds-1+b1 [95.3 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.018+ds-1+b1 [98.3 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b2 [27.3 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-4+b8 [8680 B] Get:76 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1 [13.1 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.8-1+b1 [195 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b3 [75.1 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libtype-tiny-perl all 1.012004-1 [351 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b2 [19.8 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.08-1 [90.6 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1 [34.2 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.22-3 [84.7 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 lintian all 2.106.1 [1332 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5184 kB in 2s (3176 kB/s) Selecting previously unselected package diffstat. (Reading database ... 20616 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../01-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../02-libapt-pkg-perl_0.1.40_arm64.deb ... Unpacking libapt-pkg-perl (0.1.40) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../03-libb-hooks-op-check-perl_0.22-1+b3_arm64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b3) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../04-libdynaloader-functions-perl_0.003-1.1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1.1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../05-libdevel-callchecker-perl_0.008-1+b2_arm64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b2) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../06-libparams-classify-perl_0.015-1+b3_arm64.deb ... Unpacking libparams-classify-perl (0.015-1+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../07-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../08-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../09-libmodule-implementation-perl_0.09-1.1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1.1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../10-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../11-libvariable-magic-perl_0.62-1+b3_arm64.deb ... Unpacking libvariable-magic-perl (0.62-1+b3) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../12-libb-hooks-endofscope-perl_0.24-1.1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.24-1.1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../13-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../14-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../15-libclass-method-modifiers-perl_2.13-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../16-libclass-xsaccessor-perl_1.19-3+b7_arm64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b7) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../17-libclone-perl_0.45-1+b1_arm64.deb ... Unpacking libclone-perl (0.45-1+b1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../18-libconfig-tiny-perl_2.27-1_all.deb ... Unpacking libconfig-tiny-perl (2.27-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../19-libparams-util-perl_1.102-1+b1_arm64.deb ... Unpacking libparams-util-perl (1.102-1+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../20-libsub-install-perl_0.928-1.1_all.deb ... Unpacking libsub-install-perl (0.928-1.1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../21-libdata-optlist-perl_0.112-1_all.deb ... Unpacking libdata-optlist-perl (0.112-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../22-libsub-exporter-perl_0.988-1_all.deb ... Unpacking libsub-exporter-perl (0.988-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../23-libconst-fast-perl_0.014-1.1_all.deb ... Unpacking libconst-fast-perl (0.014-1.1) ... Selecting previously unselected package libcpanel-json-xs-perl. Preparing to unpack .../24-libcpanel-json-xs-perl_4.26-1_arm64.deb ... Unpacking libcpanel-json-xs-perl (4.26-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../25-libdevel-stacktrace-perl_2.0400-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../26-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../27-libiterator-perl_0.03+ds1-1.1_all.deb ... Unpacking libiterator-perl (0.03+ds1-1.1) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../28-libiterator-util-perl_0.02+ds1-1.1_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-1.1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../29-libexporter-tiny-perl_1.002002-1_all.deb ... Unpacking libexporter-tiny-perl (1.002002-1) ... Selecting previously unselected package liblist-moreutils-xs-perl. Preparing to unpack .../30-liblist-moreutils-xs-perl_0.430-2_arm64.deb ... Unpacking liblist-moreutils-xs-perl (0.430-2) ... Selecting previously unselected package liblist-moreutils-perl. 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Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.106.1) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.32-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 5445784 Build-Time: 14991 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 66 Job: biobambam2_2.0.183+ds-1 Lintian: pass Machine Architecture: arm64 Package: biobambam2 Package-Time: 15087 Source-Version: 2.0.183+ds-1 Space: 5445784 Status: successful Version: 2.0.183+ds-1 -------------------------------------------------------------------------------- Finished at 2021-10-01T03:48:35Z Build needed 04:11:27, 5445784k disk space