sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | biobambam2 2.0.185+ds-2 (i386) Fri, 28 Jun 2024 09:08:24 +0000 | +==============================================================================+ Package: biobambam2 Version: 2.0.185+ds-2 Source Version: 2.0.185+ds-2 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.laDWMxhBRi... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-gOip2V/resolver-zNpbMy' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [198 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.6 MB] Get:3 http://mirror.einval.org/debian unstable/main i386 Packages [9745 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 Packages [9820 kB] Fetched 30.4 MB in 8s (3959 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-aarch64-linux-gnu binutils-common bsdutils libbinutils libblkid1 libctf-nobfd0 libctf0 libgprofng0 libmount1 libsframe1 libsmartcols1 libuuid1 linux-libc-dev login mawk util-linux 17 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 11.9 MB of archives. After this operation, 687 kB of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 bsdutils arm64 1:2.40.1-9 [103 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libsmartcols1 arm64 2.40.1-9 [133 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libuuid1 arm64 2.40.1-9 [34.5 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libblkid1 arm64 2.40.1-9 [161 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmount1 arm64 2.40.1-9 [188 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 util-linux arm64 2.40.1-9 [1168 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 login arm64 1:4.15.2-3 [562 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 mawk arm64 1.3.4.20240622-1 [129 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libgprofng0 arm64 2.42.50.20240625-1 [667 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libctf0 arm64 2.42.50.20240625-1 [82.0 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libctf-nobfd0 arm64 2.42.50.20240625-1 [149 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 binutils-aarch64-linux-gnu arm64 2.42.50.20240625-1 [2743 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libbinutils arm64 2.42.50.20240625-1 [653 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 binutils arm64 2.42.50.20240625-1 [81.0 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 binutils-common arm64 2.42.50.20240625-1 [2605 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libsframe1 arm64 2.42.50.20240625-1 [75.5 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev all 6.9.7-1 [2338 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.9 MB in 0s (30.7 MB/s) (Reading database ... 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Unpacking libsframe1:arm64 (2.42.50.20240625-1) over (2.42.50.20240618-1) ... Preparing to unpack .../10-linux-libc-dev_6.9.7-1_all.deb ... Unpacking linux-libc-dev (6.9.7-1) over (6.8.12-1) ... Setting up binutils-common:arm64 (2.42.50.20240625-1) ... Setting up linux-libc-dev (6.9.7-1) ... Setting up libctf-nobfd0:arm64 (2.42.50.20240625-1) ... Setting up libsframe1:arm64 (2.42.50.20240625-1) ... Setting up mawk (1.3.4.20240622-1) ... Setting up libbinutils:arm64 (2.42.50.20240625-1) ... Setting up login (1:4.15.2-3) ... Setting up libctf0:arm64 (2.42.50.20240625-1) ... Setting up libgprofng0:arm64 (2.42.50.20240625-1) ... Setting up binutils-aarch64-linux-gnu (2.42.50.20240625-1) ... Setting up binutils (2.42.50.20240625-1) ... Processing triggers for libc-bin (2.38-13) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'biobambam2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biobambam2.git Please use: git clone https://salsa.debian.org/med-team/biobambam2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1284 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main biobambam2 2.0.185+ds-2 (dsc) [2254 B] Get:2 http://mirror.einval.org/debian unstable/main biobambam2 2.0.185+ds-2 (tar) [249 kB] Get:3 http://mirror.einval.org/debian unstable/main biobambam2 2.0.185+ds-2 (diff) [1032 kB] Fetched 1284 kB in 0s (16.4 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/biobambam2-gOip2V/biobambam2-2.0.185+ds' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-gOip2V' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkgconf, libmaus2-dev (>= 2.0.800), libxerces-c-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), pkgconf, libmaus2-dev (>= 2.0.800), libxerces-c-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [764 B] Get:5 copy:/<>/apt_archive ./ Packages [806 B] Fetched 2179 B in 0s (125 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: adduser autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-13-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dpkg-cross dwz fakeroot file g++-13-i686-linux-gnu g++-i686-linux-gnu gcc-13-base:i386 gcc-13-cross-base gcc-13-i686-linux-gnu gcc-13-i686-linux-gnu-base gcc-14-base:i386 gcc-14-cross-base gcc-i686-linux-gnu gettext gettext-base gnupg gnupg-l10n gpg gpg-agent gpgconf gpgsm groff-base icu-devtools intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libassuan0 libassuan0:i386 libatomic1:i386 libatomic1-i386-cross libbrotli1:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libcurl3t64-gnutls:i386 libdb5.3t64:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libffi8:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:i386 libgcc-13-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgmp10:i386 libgnutls30t64:i386 libgomp1:i386 libgomp1-i386-cross libgpg-error0:i386 libgpgme11t64:i386 libgssapi-krb5-2:i386 libhogweed6t64:i386 libicu-dev:i386 libicu72 libicu72:i386 libidn2-0:i386 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 libksba8 libldap-2.5-0 libldap-2.5-0:i386 liblocale-gettext-perl libmagic-mgc libmagic1t64 libmaus2-2:i386 libmaus2-dev:i386 libncursesw6 libnettle8t64:i386 libnghttp2-14:i386 libnpth0t64 libp11-kit0:i386 libpipeline1 libpkgconf3 libpsl5t64:i386 libquadmath0:i386 libquadmath0-i386-cross libreadline8t64 librtmp1:i386 libsasl2-2 libsasl2-2:i386 libsasl2-modules-db libsasl2-modules-db:i386 libsemanage-common libsemanage2 libsepol2 libsqlite3-0 libssh2-1t64:i386 libssl3t64:i386 libstdc++-13-dev:i386 libstdc++-13-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtasn1-6:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring5:i386 libxerces-c-dev:i386 libxerces-c3.2t64:i386 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:i386 m4 man-db passwd pinentry-curses pkgconf:i386 pkgconf-bin po-debconf readline-common sensible-utils ucf zlib1g:i386 zlib1g-dev:i386 Suggested packages: cron quota autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make dbus-user-session libpam-systemd pinentry-gnome3 tor binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gpg-wks-server parcimonie xloadimage scdaemon groff glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 gnutls-bin:i386 krb5-doc:i386 krb5-user:i386 icu-doc:i386 secrecy:i386 libstdc++-13-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libxerces-c-doc:i386 libyaml-shell-perl m4-doc apparmor less www-browser pinentry-doc libmail-box-perl readline-doc Recommended packages: curl | wget | lynx gnupg-utils gpg-wks-client ca-certificates:i386 libarchive-cpio-perl libgpg-error-l10n:i386 gpg-wks-client:i386 krb5-locales:i386 libldap-common libldap-common:i386 libgpm2 publicsuffix:i386 libsasl2-modules libsasl2-modules:i386 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: adduser autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-13-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dpkg-cross dwz fakeroot file g++-13-i686-linux-gnu g++-i686-linux-gnu gcc-13-base:i386 gcc-13-cross-base gcc-13-i686-linux-gnu gcc-13-i686-linux-gnu-base gcc-14-base:i386 gcc-14-cross-base gcc-i686-linux-gnu gettext gettext-base gnupg gnupg-l10n gpg gpg-agent gpgconf gpgsm groff-base icu-devtools intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libassuan0 libassuan0:i386 libatomic1:i386 libatomic1-i386-cross libbrotli1:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libcurl3t64-gnutls:i386 libdb5.3t64:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libffi8:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:i386 libgcc-13-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgmp10:i386 libgnutls30t64:i386 libgomp1:i386 libgomp1-i386-cross libgpg-error0:i386 libgpgme11t64:i386 libgssapi-krb5-2:i386 libhogweed6t64:i386 libicu-dev:i386 libicu72 libicu72:i386 libidn2-0:i386 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 libksba8 libldap-2.5-0 libldap-2.5-0:i386 liblocale-gettext-perl libmagic-mgc libmagic1t64 libmaus2-2:i386 libmaus2-dev:i386 libncursesw6 libnettle8t64:i386 libnghttp2-14:i386 libnpth0t64 libp11-kit0:i386 libpipeline1 libpkgconf3 libpsl5t64:i386 libquadmath0:i386 libquadmath0-i386-cross libreadline8t64 librtmp1:i386 libsasl2-2 libsasl2-2:i386 libsasl2-modules-db libsasl2-modules-db:i386 libsemanage-common libsemanage2 libsepol2 libsqlite3-0 libssh2-1t64:i386 libssl3t64:i386 libstdc++-13-dev:i386 libstdc++-13-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtasn1-6:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring5:i386 libxerces-c-dev:i386 libxerces-c3.2t64:i386 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:i386 m4 man-db passwd pinentry-curses pkgconf:i386 pkgconf-bin po-debconf readline-common sbuild-build-depends-main-dummy:i386 sensible-utils ucf zlib1g:i386 zlib1g-dev:i386 0 upgraded, 152 newly installed, 0 to remove and 0 not upgraded. Need to get 134 MB of archives. After this operation, 586 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7 [14.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libsemanage-common all 3.5-1 [9908 B] Get:4 http://mirror.einval.org/debian unstable/main arm64 libsepol2 arm64 3.5-2+b1 [250 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libsemanage2 arm64 3.5-1+b3 [83.1 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 passwd arm64 1:4.15.2-3 [971 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 adduser all 3.137 [140 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-4 [69.3 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.22.5-1 [197 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.40.1-9 [95.2 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.12.1-2 [1394 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.22.5-1 [723 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 gcc-13-i686-linux-gnu-base arm64 13.2.0-12cross1 [42.6 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 cpp-13-i686-linux-gnu arm64 13.2.0-12cross1 [9276 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:13.2.0-7 [4720 B] Get:28 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.42.50.20240625-1 [2395 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.38-11cross1 [1354 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 14-20240127-1cross1 [69.3 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 14-20240127-1cross1 [135 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 14-20240127-1cross1 [26.7 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 14-20240127-1cross1 [7280 B] Get:37 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 14-20240127-1cross1 [2602 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 14-20240127-1cross1 [719 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 14-20240127-1cross1 [1050 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 14-20240127-1cross1 [233 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libgcc-13-dev-i386-cross all 13.2.0-12cross1 [2497 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 gcc-13-i686-linux-gnu arm64 13.2.0-12cross1 [17.8 MB] Get:43 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:13.2.0-7 [1444 B] Get:44 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.38-11cross1 [1728 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libstdc++-13-dev-i386-cross all 13.2.0-12cross1 [2276 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 g++-13-i686-linux-gnu arm64 13.2.0-12cross1 [10.1 MB] Get:47 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:13.2.0-7 [1196 B] Get:48 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg-3 [609 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-3.1 [299 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.31-1 [64.8 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.10 [3480 B] Get:64 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.16 [88.6 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:70 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.22.5-1 [1526 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.16 [891 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libassuan0 arm64 2.5.6-1+b1 [48.0 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.43-7 [113 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libksba8 arm64 1.6.6-1 [122 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-1 [173 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libnpth0t64 arm64 1.6-3.1 [17.8 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 dirmngr arm64 2.2.43-7 [341 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.35.1-1 [29.6 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.35.1-1 [74.0 kB] Get:87 http://mirror.einval.org/debian unstable/main i386 gcc-13-base i386 13.3.0-1 [46.0 kB] Get:88 http://mirror.einval.org/debian unstable/main i386 gcc-14-base i386 14.1.0-2 [44.6 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 gnupg-l10n all 2.2.43-7 [701 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.46.0-1 [843 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.2.43-7 [475 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.5-2 [124 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 pinentry-curses arm64 1.2.1-3+b2 [75.9 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 gpg-agent arm64 2.2.43-7 [228 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 gpgsm arm64 2.2.43-7 [227 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 gnupg all 2.2.43-7 [375 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 icu-devtools arm64 72.1-4+b1 [194 kB] Get:98 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 14.1.0-2 [88.1 kB] Get:99 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.38-13 [2643 kB] Get:100 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 14.1.0-2 [2606 kB] Get:101 http://mirror.einval.org/debian unstable/main i386 libgpg-error0 i386 1.49-2 [84.9 kB] Get:102 http://mirror.einval.org/debian unstable/main i386 libassuan0 i386 2.5.6-1+b1 [52.2 kB] Get:103 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 14.1.0-2 [7552 B] Get:104 http://mirror.einval.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get:105 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.36-4 [95.7 kB] Get:106 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.36-4 [125 kB] Get:107 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.38-13 [1733 kB] Get:108 http://mirror.einval.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get:109 http://mirror.einval.org/debian unstable/main i386 libgmp10 i386 2:6.3.0+dfsg-2+b1 [571 kB] Get:110 http://mirror.einval.org/debian unstable/main i386 libnettle8t64 i386 3.10-1 [316 kB] Get:111 http://mirror.einval.org/debian unstable/main i386 libhogweed6t64 i386 3.10-1 [337 kB] Get:112 http://mirror.einval.org/debian unstable/main i386 libunistring5 i386 1.2-1 [433 kB] Get:113 http://mirror.einval.org/debian unstable/main i386 libidn2-0 i386 2.3.7-2 [129 kB] Get:114 http://mirror.einval.org/debian unstable/main i386 libffi8 i386 3.4.6-1 [21.2 kB] Get:115 http://mirror.einval.org/debian unstable/main i386 libp11-kit0 i386 0.25.3-5 [416 kB] Get:116 http://mirror.einval.org/debian unstable/main i386 libtasn1-6 i386 4.19.0-3+b2 [50.6 kB] Get:117 http://mirror.einval.org/debian unstable/main i386 libgnutls30t64 i386 3.8.5-4 [1436 kB] Get:118 http://mirror.einval.org/debian unstable/main i386 libkrb5support0 i386 1.21.2-1 [34.5 kB] Get:119 http://mirror.einval.org/debian unstable/main i386 libk5crypto3 i386 1.21.2-1 [83.2 kB] Get:120 http://mirror.einval.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get:121 http://mirror.einval.org/debian unstable/main i386 libzstd1 i386 1.5.6+dfsg-1 [286 kB] Get:122 http://mirror.einval.org/debian unstable/main i386 zlib1g i386 1:1.3.dfsg+really1.3.1-1 [83.9 kB] Get:123 http://mirror.einval.org/debian unstable/main i386 libssl3t64 i386 3.2.2-1 [2237 kB] Get:124 http://mirror.einval.org/debian unstable/main i386 libkrb5-3 i386 1.21.2-1 [350 kB] Get:125 http://mirror.einval.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.2-1 [146 kB] Get:126 http://mirror.einval.org/debian unstable/main i386 libdb5.3t64 i386 5.3.28+dfsg2-7 [759 kB] Get:127 http://mirror.einval.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-6 [20.5 kB] Get:128 http://mirror.einval.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-6 [60.6 kB] Get:129 http://mirror.einval.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-1 [199 kB] Get:130 http://mirror.einval.org/debian unstable/main i386 libnghttp2-14 i386 1.62.1-1 [83.7 kB] Get:131 http://mirror.einval.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get:132 http://mirror.einval.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get:133 http://mirror.einval.org/debian unstable/main i386 libssh2-1t64 i386 1.11.0-5 [225 kB] Get:134 http://mirror.einval.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.8.0-1 [469 kB] Get:135 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 14.1.0-2 [138 kB] Get:136 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 14.1.0-2 [27.2 kB] Get:137 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 14.1.0-2 [765 kB] Get:138 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 14.1.0-2 [1054 kB] Get:139 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 14.1.0-2 [231 kB] Get:140 http://mirror.einval.org/debian unstable/main i386 libgcc-13-dev i386 13.3.0-1 [2500 kB] Get:141 http://mirror.einval.org/debian unstable/main i386 libgpgme11t64 i386 1.18.0-4.1+b1 [308 kB] Get:142 http://mirror.einval.org/debian unstable/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get:143 http://mirror.einval.org/debian unstable/main i386 libicu-dev i386 72.1-4+b1 [10.6 MB] Get:144 http://mirror.einval.org/debian unstable/main i386 libmaus2-2 i386 2.0.813+ds-3 [2164 kB] Get:145 http://mirror.einval.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get:146 http://mirror.einval.org/debian unstable/main i386 libmaus2-dev i386 2.0.813+ds-3 [5077 kB] Get:147 http://mirror.einval.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-3 [35.3 kB] Get:148 http://mirror.einval.org/debian unstable/main i386 libstdc++-13-dev i386 13.3.0-1 [2356 kB] Get:149 http://mirror.einval.org/debian unstable/main i386 libxerces-c3.2t64 i386 3.2.4+debian-1.3 [952 kB] Get:150 http://mirror.einval.org/debian unstable/main i386 libxerces-c-dev i386 3.2.4+debian-1.3 [1778 kB] Get:151 http://mirror.einval.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-3 [29.4 kB] Get:152 http://mirror.einval.org/debian unstable/main i386 pkgconf i386 1.8.1-3 [26.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 MB in 4s (33.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11948 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libsemanage-common. Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) ... Setting up libsemanage-common (3.5-1) ... Selecting previously unselected package libsepol2:arm64. (Reading database ... 11969 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2+b1_arm64.deb ... Unpacking libsepol2:arm64 (3.5-2+b1) ... Setting up libsepol2:arm64 (3.5-2+b1) ... Selecting previously unselected package libsemanage2:arm64. (Reading database ... 11974 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b3_arm64.deb ... Unpacking libsemanage2:arm64 (3.5-1+b3) ... Setting up libsemanage2:arm64 (3.5-1+b3) ... Selecting previously unselected package passwd. (Reading database ... 11979 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.15.2-3_arm64.deb ... Unpacking passwd (1:4.15.2-3) ... Setting up passwd (1:4.15.2-3) ... Shadow passwords are now on. Selecting previously unselected package adduser. (Reading database ... 12343 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... Unpacking adduser (3.137) ... Setting up adduser (3.137) ... Selecting previously unselected package readline-common. (Reading database ... 12414 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.22.5-1_arm64.deb ... Unpacking gettext-base (0.22.5-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../006-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.40.1-9_arm64.deb ... Unpacking bsdextrautils (2.40.1-9) ... 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Selecting previously unselected package binutils-i686-linux-gnu. Preparing to unpack .../021-binutils-i686-linux-gnu_2.42.50.20240625-1_arm64.deb ... Unpacking binutils-i686-linux-gnu (2.42.50.20240625-1) ... Selecting previously unselected package gcc-13-cross-base. Preparing to unpack .../022-gcc-13-cross-base_13.2.0-12cross1_all.deb ... Unpacking gcc-13-cross-base (13.2.0-12cross1) ... Selecting previously unselected package gcc-14-cross-base. Preparing to unpack .../023-gcc-14-cross-base_14-20240127-1cross1_all.deb ... Unpacking gcc-14-cross-base (14-20240127-1cross1) ... Selecting previously unselected package libc6-i386-cross. Preparing to unpack .../024-libc6-i386-cross_2.38-11cross1_all.deb ... Unpacking libc6-i386-cross (2.38-11cross1) ... Selecting previously unselected package libgcc-s1-i386-cross. Preparing to unpack .../025-libgcc-s1-i386-cross_14-20240127-1cross1_all.deb ... Unpacking libgcc-s1-i386-cross (14-20240127-1cross1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../070-gpgconf_2.2.43-7_arm64.deb ... Unpacking gpgconf (2.2.43-7) ... Selecting previously unselected package libksba8:arm64. Preparing to unpack .../071-libksba8_1.6.6-1_arm64.deb ... Unpacking libksba8:arm64 (1.6.6-1) ... Selecting previously unselected package libsasl2-modules-db:arm64. 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Selecting previously unselected package libc6:i386. Preparing to unpack .../091-libc6_2.38-13_i386.deb ... Unpacking libc6:i386 (2.38-13) ... Selecting previously unselected package libasan8:i386. Preparing to unpack .../092-libasan8_14.1.0-2_i386.deb ... Unpacking libasan8:i386 (14.1.0-2) ... Selecting previously unselected package libgpg-error0:i386. Preparing to unpack .../093-libgpg-error0_1.49-2_i386.deb ... Unpacking libgpg-error0:i386 (1.49-2) ... Selecting previously unselected package libassuan0:i386. Preparing to unpack .../094-libassuan0_2.5.6-1+b1_i386.deb ... Unpacking libassuan0:i386 (2.5.6-1+b1) ... Selecting previously unselected package libatomic1:i386. Preparing to unpack .../095-libatomic1_14.1.0-2_i386.deb ... Unpacking libatomic1:i386 (14.1.0-2) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../096-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... Selecting previously unselected package libcrypt1:i386. 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Selecting previously unselected package libssl3t64:i386. Preparing to unpack .../115-libssl3t64_3.2.2-1_i386.deb ... Unpacking libssl3t64:i386 (3.2.2-1) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../116-libkrb5-3_1.21.2-1_i386.deb ... Unpacking libkrb5-3:i386 (1.21.2-1) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../117-libgssapi-krb5-2_1.21.2-1_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.2-1) ... Selecting previously unselected package libdb5.3t64:i386. Preparing to unpack .../118-libdb5.3t64_5.3.28+dfsg2-7_i386.deb ... Unpacking libdb5.3t64:i386 (5.3.28+dfsg2-7) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../119-libsasl2-modules-db_2.1.28+dfsg1-6_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../120-libsasl2-2_2.1.28+dfsg1-6_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../121-libldap-2.5-0_2.5.18+dfsg-1_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-1) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../122-libnghttp2-14_1.62.1-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.62.1-1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../123-libpsl5t64_0.21.2-1.1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../124-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../125-libssh2-1t64_1.11.0-5_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.0-5) ... Selecting previously unselected package libcurl3t64-gnutls:i386. 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Selecting previously unselected package libmaus2-dev:i386. Preparing to unpack .../138-libmaus2-dev_2.0.813+ds-3_i386.deb ... Unpacking libmaus2-dev:i386 (2.0.813+ds-3) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../139-libpkgconf3_1.8.1-3_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-3) ... Selecting previously unselected package libstdc++-13-dev:i386. Preparing to unpack .../140-libstdc++-13-dev_13.3.0-1_i386.deb ... Unpacking libstdc++-13-dev:i386 (13.3.0-1) ... Selecting previously unselected package libxerces-c3.2t64:i386. Preparing to unpack .../141-libxerces-c3.2t64_3.2.4+debian-1.3_i386.deb ... Unpacking libxerces-c3.2t64:i386 (3.2.4+debian-1.3) ... Selecting previously unselected package libxerces-c-dev:i386. Preparing to unpack .../142-libxerces-c-dev_3.2.4+debian-1.3_i386.deb ... Unpacking libxerces-c-dev:i386 (3.2.4+debian-1.3) ... Selecting previously unselected package pkgconf-bin. 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Setting up libdebhelper-perl (13.16) ... Setting up libsqlite3-0:arm64 (3.46.0-1) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.22.5-1) ... Setting up m4 (1.4.19-4) ... Setting up gcc-14-cross-base (14-20240127-1cross1) ... Setting up file (1:5.45-3) ... Setting up libassuan0:arm64 (2.5.6-1+b1) ... Setting up libyaml-perl (1.31-1) ... Setting up libfakeroot:arm64 (1.35.1-1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libpkgconf3:arm64 (1.8.1-3) ... Setting up gcc-13-base:i386 (13.3.0-1) ... Setting up gnupg-l10n (2.2.43-7) ... Setting up gcc-13-cross-base (13.2.0-12cross1) ... Setting up autopoint (0.22.5-1) ... Setting up icu-devtools (72.1-4+b1) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up libncursesw6:arm64 (6.5-2) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libc6-i386-cross (2.38-11cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up gcc-13-i686-linux-gnu-base:arm64 (13.2.0-12cross1) ... Setting up cpp-13-i686-linux-gnu (13.2.0-12cross1) ... Setting up libquadmath0-i386-cross (14-20240127-1cross1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.12.7+dfsg-3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-3+b2) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-1) ... Setting up libtool (2.4.7-7) ... Setting up libatomic1-i386-cross (14-20240127-1cross1) ... Setting up libgomp1-i386-cross (14-20240127-1cross1) ... Setting up libc6-dev-i386-cross (2.38-11cross1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-1) ... Setting up pkgconf:i386 (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libgcc-s1-i386-cross (14-20240127-1cross1) ... Setting up dh-autoreconf (20) ... Setting up libitm1-i386-cross (14-20240127-1cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up gpgconf (2.2.43-7) ... Setting up cpp-i686-linux-gnu (4:13.2.0-7) ... Setting up gpg (2.2.43-7) ... Setting up gpg-agent (2.2.43-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up gpgsm (2.2.43-7) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan8-i386-cross (14-20240127-1cross1) ... Setting up libstdc++6-i386-cross (14-20240127-1cross1) ... Setting up dirmngr (2.2.43-7) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-3.1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gnupg (2.2.43-7) ... Setting up debhelper (13.16) ... Setting up libubsan1-i386-cross (14-20240127-1cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libgcc-13-dev-i386-cross (13.2.0-12cross1) ... Setting up gcc-13-i686-linux-gnu (13.2.0-12cross1) ... Setting up libstdc++-13-dev-i386-cross (13.2.0-12cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up gcc-i686-linux-gnu (4:13.2.0-7) ... Setting up g++-13-i686-linux-gnu (13.2.0-12cross1) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up g++-i686-linux-gnu (4:13.2.0-7) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-i386 (12.10) ... Setting up libgcc-s1:i386 (14.1.0-2) ... Setting up libc6:i386 (2.38-13) ... Setting up libdb5.3t64:i386 (5.3.28+dfsg2-7) ... Setting up libffi8:i386 (3.4.6-1) ... Setting up libasan8:i386 (14.1.0-2) ... Setting up libtasn1-6:i386 (4.19.0-3+b2) ... Setting up libstdc++6:i386 (14.1.0-2) ... Setting up libitm1:i386 (14.1.0-2) ... Setting up libzstd1:i386 (1.5.6+dfsg-1) ... Setting up libkeyutils1:i386 (1.6.3-3) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up libgpg-error0:i386 (1.49-2) ... Setting up libbrotli1:i386 (1.1.0-2+b3) ... Setting up libnghttp2-14:i386 (1.62.1-1) ... Setting up zlib1g:i386 (1:1.3.dfsg+really1.3.1-1) ... Setting up libcrypt1:i386 (1:4.4.36-4) ... Setting up libcom-err2:i386 (1.47.1-1) ... Setting up libassuan0:i386 (2.5.6-1+b1) ... Setting up libgomp1:i386 (14.1.0-2) ... Setting up libkrb5support0:i386 (1.21.2-1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-6) ... Setting up libnettle8t64:i386 (3.10-1) ... Setting up libgmp10:i386 (2:6.3.0+dfsg-2+b1) ... Setting up libquadmath0:i386 (14.1.0-2) ... Setting up libp11-kit0:i386 (0.25.3-5) ... Setting up libunistring5:i386 (1.2-1) ... Setting up libatomic1:i386 (14.1.0-2) ... Setting up libk5crypto3:i386 (1.21.2-1) ... Setting up libubsan1:i386 (14.1.0-2) ... Setting up libhogweed6t64:i386 (3.10-1) ... Setting up libgcc-13-dev:i386 (13.3.0-1) ... Setting up libcrypt-dev:i386 (1:4.4.36-4) ... Setting up libc6-dev:i386 (2.38-13) ... Setting up libgpgme11t64:i386 (1.18.0-4.1+b1) ... Setting up libicu-dev:i386 (72.1-4+b1) ... Setting up libstdc++-13-dev:i386 (13.3.0-1) ... Setting up libssl3t64:i386 (3.2.2-1) ... Setting up libmaus2-2:i386 (2.0.813+ds-3) ... Setting up libidn2-0:i386 (2.3.7-2) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-6) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1) ... Setting up libkrb5-3:i386 (1.21.2-1) ... Setting up libssh2-1t64:i386 (1.11.0-5) ... Setting up libmaus2-dev:i386 (2.0.813+ds-3) ... Setting up libgnutls30t64:i386 (3.8.5-4) ... Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libgssapi-krb5-2:i386 (1.21.2-1) ... Setting up libcurl3t64-gnutls:i386 (8.8.0-1) ... Setting up libxerces-c3.2t64:i386 (3.2.4+debian-1.3) ... Setting up libxerces-c-dev:i386 (3.2.4+debian-1.3) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.38-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.42.50.20240625-1 dpkg-dev_1.22.6 g++-13_13.3.0-1 gcc-13_13.3.0-1 libc6-dev_2.38-13 libstdc++-13-dev_13.3.0-1 libstdc++-13-dev-i386-cross_13.2.0-12cross1 libstdc++6_14.1.0-2 libstdc++6-i386-cross_14-20240127-1cross1 linux-libc-dev_6.9.7-1 Package versions: adduser_3.137 apt_2.9.5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-1 autotools-dev_20220109.1 base-files_13.3 base-passwd_3.6.3 bash_5.2.21-2.1 binutils_2.42.50.20240625-1 binutils-aarch64-linux-gnu_2.42.50.20240625-1 binutils-common_2.42.50.20240625-1 binutils-i686-linux-gnu_2.42.50.20240625-1 bsdextrautils_2.40.1-9 bsdutils_1:2.40.1-9 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.3.0-1 cpp-13-aarch64-linux-gnu_13.3.0-1 cpp-13-i686-linux-gnu_13.2.0-12cross1 cpp-aarch64-linux-gnu_4:13.2.0-7 cpp-i686-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-i386_12.10 dash_0.5.12-9 debconf_1.5.86 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.19 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 dpkg_1.22.6 dpkg-cross_2.6.20 dpkg-dev_1.22.6 dwz_0.15-1+b1 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:13.2.0-7 g++-13_13.3.0-1 g++-13-aarch64-linux-gnu_13.3.0-1 g++-13-i686-linux-gnu_13.2.0-12cross1 g++-aarch64-linux-gnu_4:13.2.0-7 g++-i686-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.3.0-1 gcc-13-aarch64-linux-gnu_13.3.0-1 gcc-13-base_13.3.0-1 gcc-13-cross-base_13.2.0-12cross1 gcc-13-i686-linux-gnu_13.2.0-12cross1 gcc-13-i686-linux-gnu-base_13.2.0-12cross1 gcc-14-base_14.1.0-2 gcc-14-cross-base_14-20240127-1cross1 gcc-aarch64-linux-gnu_4:13.2.0-7 gcc-i686-linux-gnu_4:13.2.0-7 gettext_0.22.5-1 gettext-base_0.22.5-1 gnupg_2.2.43-7 gnupg-l10n_2.2.43-7 gpg_2.2.43-7 gpg-agent_2.2.43-7 gpgconf_2.2.43-7 gpgsm_2.2.43-7 gpgv_2.2.43-7 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hostname_3.23+nmu2 icu-devtools_72.1-4+b1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.5 libarchive-zip-perl_1.68-1 libasan8_14.1.0-2 libasan8-i386-cross_14-20240127-1cross1 libassuan0_2.5.6-1+b1 libatomic1_14.1.0-2 libatomic1-i386-cross_14-20240127-1cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4 libbinutils_2.42.50.20240625-1 libblkid1_2.40.1-9 libbrotli1_1.1.0-2+b3 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-13 libc-dev-bin_2.38-13 libc6_2.38-13 libc6-dev_2.38-13 libc6-dev-i386-cross_2.38-11cross1 libc6-i386-cross_2.38-11cross1 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcc1-0_14.1.0-2 libcom-err2_1.47.1-1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.50.20240625-1 libctf0_2.42.50.20240625-1 libcurl3t64-gnutls_8.8.0-1 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.6 libelf1t64_0.191-1+b1 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.14.0-1 libfile-which-perl_1.27-2 libgcc-13-dev_13.3.0-1 libgcc-13-dev-i386-cross_13.2.0-12cross1 libgcc-s1_14.1.0-2 libgcc-s1-i386-cross_14-20240127-1cross1 libgcrypt20_1.10.3-3 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-4 libgomp1_14.1.0-2 libgomp1-i386-cross_14-20240127-1cross1 libgpg-error0_1.49-2 libgpgme11t64_1.18.0-4.1+b1 libgprofng0_2.42.50.20240625-1 libgssapi-krb5-2_1.21.2-1 libhogweed6t64_3.10-1 libhwasan0_14.1.0-2 libicu-dev_72.1-4+b1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.1.0-2 libitm1-i386-cross_14-20240127-1cross1 libjansson4_2.14-2+b2 libk5crypto3_1.21.2-1 libkeyutils1_1.6.3-3 libkrb5-3_1.21.2-1 libkrb5support0_1.21.2-1 libksba8_1.6.6-1 libldap-2.5-0_2.5.18+dfsg-1 liblocale-gettext-perl_1.07-7 liblsan0_14.1.0-2 liblz4-1_1.9.4-2 liblzma5_5.6.2-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmaus2-2_2.0.813+ds-3 libmaus2-dev_2.0.813+ds-3 libmd0_1.1.0-2 libmount1_2.40.1-9 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnghttp2-14_1.62.1-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.3-5 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libpipeline1_1.5.7-2 libpkgconf3_1.8.1-3 libpsl5t64_0.21.2-1.1 libquadmath0_14.1.0-2 libquadmath0-i386-cross_14-20240127-1cross1 libreadline8t64_8.2-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2+b1 libsframe1_2.42.50.20240625-1 libsmartcols1_2.40.1-9 libsqlite3-0_3.46.0-1 libssh2-1t64_1.11.0-5 libssl3t64_3.2.2-1 libstdc++-13-dev_13.3.0-1 libstdc++-13-dev-i386-cross_13.2.0-12cross1 libstdc++6_14.1.0-2 libstdc++6-i386-cross_14-20240127-1cross1 libsystemd0_256.1-2 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.1.0-2 libubsan1_14.1.0-2 libubsan1-i386-cross_14-20240127-1cross1 libuchardet0_0.0.8-1+b1 libudev1_256.1-2 libunistring5_1.2-1 libuuid1_2.40.1-9 libxerces-c-dev_3.2.4+debian-1.3 libxerces-c3.2t64_3.2.4+debian-1.3 libxml-libxml-perl_2.0207+dfsg+really+2.0134-3.1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.12.7+dfsg-3 libxxhash0_0.8.2-2+b1 libyaml-perl_1.31-1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.9.7-1 login_1:4.15.2-3 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240622-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 passwd_1:4.15.2-3 patch_2.7.6-7 perl_5.38.2-5 perl-base_5.38.2-5 perl-modules-5.38_5.38.2-5 pinentry-curses_1.2.1-3+b2 pkgconf_1.8.1-3 pkgconf-bin_1.8.1-3 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.09-2 tar_1.35+dfsg-3 ucf_3.0043+nmu1 util-linux_2.40.1-9 xz-utils_5.6.2-1 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biobambam2 Binary: biobambam2 Architecture: any Version: 2.0.185+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://gitlab.com/german.tischler/biobambam2 Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/biobambam2 Vcs-Git: https://salsa.debian.org/med-team/biobambam2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), pkgconf, libmaus2-dev (>= 2.0.800), libxerces-c-dev Package-List: biobambam2 deb science optional arch=any Checksums-Sha1: 2776b598958c159faa1147765a37a9be788c8725 249000 biobambam2_2.0.185+ds.orig.tar.xz a6d8b9f5865c14806d595f2ac8cd188e3f9edcd2 1032436 biobambam2_2.0.185+ds-2.debian.tar.xz Checksums-Sha256: 90cc8328f4e78771cf87cc918d890d12073cbbfbcad7cf94e35b655e3ec2747a 249000 biobambam2_2.0.185+ds.orig.tar.xz 5010ff92699f48db055e33a6ddda005ed339388cc1995503e985325e4d53652c 1032436 biobambam2_2.0.185+ds-2.debian.tar.xz Files: d0c485318daa583137b98d18fd0add77 249000 biobambam2_2.0.185+ds.orig.tar.xz bc64f60dd4ccfa2477438dcd2db1131e 1032436 biobambam2_2.0.185+ds-2.debian.tar.xz Dgit: 8e56855700614f8a0ddddf4fd2cb5611e10015e4 debian archive/debian/2.0.185+ds-2 https://git.dgit.debian.org/biobambam2 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmYikWMUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrX1A//dGe1VAwa3juRlsGgmA9kRTYR+J89 x2/kBqtpIS8cO7onEyZ2MDixN7hFFq9QHCh0w7q1vBpdMMmPXJ5doQIQuTVcvWia Ugv0eGCk7v6Mja6dwECg9/JZ9IKn4BDQ0Mxectx/vWqEaa1BDhX4OLA6TfiluenO bYa0mcj4zm4jtlw1MbFYLOmf3d4fkSrDCtAqacc/DfchuesLVBkBaxb6oX/RuPzP T41aTROw4wxydmqd/04LSEXvJ55mZqzjihN+o12VpSsfdjsjQn/1WV9O7MmLbzdz VVDzXzOCrEzT0Um7E91gJ6E1D0RcUDlSCm2HXNcmUA2xc/ZawEQ8cOQMGkUao7NR DjeF38kGLokp/Djwd0LcoJDlIAfssb+T+B/gDndJINQpHzYsggCAlHfqjpJRRwpz CgvdGt2rrIi3ktmRoraoWmqN6XvCyjQFr3XxmLlw4T6p9Mk/5+Oj3IF+suMtm7EZ 1vLUbLoGwrT/zS+3Fdiu5+31uJv3Nm816IkefAEv/FhRqzrXW20IguFdmLFeQFI8 uP3+CcgbQfcs9REtB2MAJ50GQLi84ch3vXjxdizQAiZXgxhMNXXhn6BLNcgsYmVO 9v9u6mbo10JW+0kXVHsrg0f4I+OwdcrT/xuZKrsDM/VPgFdV6g+GQJE0Dkgbb6i2 py7JtzKEuhkACi0= =ZDUq -----END PGP SIGNATURE----- gpgv: Signature made Fri Apr 19 15:44:35 2024 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./biobambam2_2.0.185+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting biobambam2 in /<> dpkg-source: info: unpacking biobambam2_2.0.185+ds.orig.tar.xz dpkg-source: info: unpacking biobambam2_2.0.185+ds-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package biobambam2 dpkg-buildpackage: info: source version 2.0.185+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f config.log make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:2: warning: The macro `AC_CANONICAL_SYSTEM' is obsolete. configure.ac:2: You should run autoupdate. ./lib/autoconf/general.m4:2081: AC_CANONICAL_SYSTEM is expanded from... configure.ac:2: the top level configure.ac:3: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:3: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:3: the top level configure.ac:6: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:6: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:1089: AM_CONFIG_HEADER is expanded from... configure.ac:6: the top level configure.ac:9: warning: The macro `AC_CANONICAL_SYSTEM' is obsolete. configure.ac:9: You should run autoupdate. ./lib/autoconf/general.m4:2081: AC_CANONICAL_SYSTEM is expanded from... configure.ac:9: the top level configure.ac:68: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:68: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:68: the top level configure.ac:147: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:147: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:147: the top level configure.ac:464: warning: AC_OUTPUT should be used without arguments. configure.ac:464: You should run autoupdate. configure.ac:3: installing './compile' configure.ac:2: installing './config.guess' configure.ac:2: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.i386 checking build system type... aarch64-unknown-linux-gnu checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking how to print strings... printf checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to enable C11 features... none needed checking whether i686-linux-gnu-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by i686-linux-gnu-gcc... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/i686-linux-gnu-nm -B checking the name lister (/usr/bin/i686-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/i686-linux-gnu/bin/ld option to reload object files... -r checking for i686-linux-gnu-file... no checking for file... file configure: WARNING: using cross tools not prefixed with host triplet checking for i686-linux-gnu-objdump... i686-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for i686-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i686-linux-gnu-ar... i686-linux-gnu-ar checking for archiver @FILE support... @ checking for i686-linux-gnu-strip... i686-linux-gnu-strip checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/i686-linux-gnu-nm -B output from i686-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for i686-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if i686-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-gcc static flag -static works... yes checking if i686-linux-gnu-gcc supports -c -o file.o... yes checking if i686-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-gcc linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for i686-linux-gnu-strip... (cached) i686-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of i686-linux-gnu-gcc... none checking whether we are cross compiling... yes checking for i686-linux-gnu-gcc... (cached) i686-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether i686-linux-gnu-gcc accepts -g... (cached) yes checking for i686-linux-gnu-gcc option to enable C11 features... (cached) none needed checking whether i686-linux-gnu-gcc understands -c and -o together... (cached) yes checking for i686-linux-gnu-g++... i686-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether i686-linux-gnu-g++ accepts -g... yes checking for i686-linux-gnu-g++ option to enable C++11 features... none needed checking how to run the C++ preprocessor... i686-linux-gnu-g++ -E checking for ld used by i686-linux-gnu-g++... /usr/i686-linux-gnu/bin/ld checking if the linker (/usr/i686-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-g++ static flag -static works... yes checking if i686-linux-gnu-g++ supports -c -o file.o... yes checking if i686-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-g++ linker (/usr/i686-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of i686-linux-gnu-g++... none checking whether the C++ compiler supports the -fsanitize=address flag... yes configure: Adding optimisation options to C compiler i686-linux-gnu-gcc flags, full list now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security configure: Adding optimisation options to C++ compiler i686-linux-gnu-g++ flags, full list now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security checking for i686-linux-gnu-pkg-config... /usr/bin/i686-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for egrep... (cached) /usr/bin/grep -E checking for libmaus2 >= 2.0.800... yes checking whether we can compile a program using libmaus2... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE... yes checking whether libmaus2 has support for io_lib... no checking for bash... /usr/bin/bash checking for base64... /usr/bin/base64 checking for xerces-c >= 3.1.1... yes configure: Using flags -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C compiler i686-linux-gnu-gcc configure: Using flags -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C++ compiler i686-linux-gnu-g++ checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/biobambam2/BamBamConfig.hpp config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtofastq-bamtofastq.o `test -f 'programs/bamtofastq.cpp' || echo './'`programs/bamtofastq.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtofastq-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicates-bammarkduplicates.o `test -f 'programs/bammarkduplicates.cpp' || echo './'`programs/bammarkduplicates.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: 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biobambam2/bam12auxmerge-zzToName.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bam12auxmerge programs/bam12auxmerge-bam12auxmerge.o biobambam2/bam12auxmerge-Licensing.o biobambam2/bam12auxmerge-Split12.o biobambam2/bam12auxmerge-Strip12.o biobambam2/bam12auxmerge-ClipReinsert.o biobambam2/bam12auxmerge-zzToName.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 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biobambam2/bam12split-Licensing.o biobambam2/bam12split-Split12.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bam12split programs/bam12split-bam12split.o biobambam2/bam12split-Licensing.o biobambam2/bam12split-Split12.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12strip-bam12strip.o `test -f 'programs/bam12strip.cpp' || echo './'`programs/bam12strip.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12strip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12strip-Strip12.o `test -f 'biobambam2/Strip12.cpp' || echo './'`biobambam2/Strip12.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bam12strip programs/bam12strip-bam12strip.o biobambam2/bam12strip-Licensing.o biobambam2/bam12strip-Strip12.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception 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-Wl,relro -Wl,-z -Wl,now -o bamrank programs/bamrank-bamrank.o biobambam2/bamrank-Licensing.o biobambam2/bamrank-AttachRank.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamclipreinsert-bamclipreinsert.o `test -f 'programs/bamclipreinsert.cpp' || echo './'`programs/bamclipreinsert.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamclipreinsert-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp 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programs/bamclipreinsert-bamclipreinsert.o biobambam2/bamclipreinsert-Licensing.o biobambam2/bamclipreinsert-ClipReinsert.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamclipXT-bamclipXT.o `test -f 'programs/bamclipXT.cpp' || echo './'`programs/bamclipXT.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamclipXT-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. 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programs/bamzztoname-bamzztoname.o `test -f 'programs/bamzztoname.cpp' || echo './'`programs/bamzztoname.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamzztoname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamzztoname-zzToName.o `test -f 'biobambam2/zzToName.cpp' || echo './'`biobambam2/zzToName.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamzztoname programs/bamzztoname-bamzztoname.o biobambam2/bamzztoname-Licensing.o biobambam2/bamzztoname-zzToName.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamzztoname programs/bamzztoname-bamzztoname.o biobambam2/bamzztoname-Licensing.o biobambam2/bamzztoname-zzToName.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamindex-bamindex.o `test -f 'programs/bamindex.cpp' || echo './'`programs/bamindex.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamindex-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o 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-Wl,-z,now -o bamfilterflags programs/bamfilterflags-bamfilterflags.o biobambam2/bamfilterflags-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterflags programs/bamfilterflags-bamfilterflags.o biobambam2/bamfilterflags-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterrg-bamfilterrg.o `test -f 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-ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamdownsamplerandom programs/bamdownsamplerandom-bamdownsamplerandom.o biobambam2/bamdownsamplerandom-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdownsamplerandom programs/bamdownsamplerandom-bamdownsamplerandom.o biobambam2/bamdownsamplerandom-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time 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-DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammerge-bammerge.o `test -f 'programs/bammerge.cpp' || echo './'`programs/bammerge.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bammerge programs/bammerge-bammerge.o biobambam2/bammerge-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 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biobambam2/bamsplitdiv-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamsplitdiv programs/bamsplitdiv-bamsplitdiv.o biobambam2/bamsplitdiv-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsplitdiv programs/bamsplitdiv-bamsplitdiv.o biobambam2/bamsplitdiv-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 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programs/bamfixmateinformation-bamfixmateinformation.o biobambam2/bamfixmateinformation-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfixmateinformation programs/bamfixmateinformation-bamfixmateinformation.o biobambam2/bamfixmateinformation-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o 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bamintervalcomment programs/bamintervalcomment-bamintervalcomment.o biobambam2/bamintervalcomment-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamintervalcomment programs/bamintervalcomment-bamintervalcomment.o biobambam2/bamintervalcomment-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o 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biobambam2/bamfillquery-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamfillquery programs/bamfillquery-bamfillquery.o biobambam2/bamfillquery-Licensing.o biobambam2/bamfillquery-AttachRank.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfillquery programs/bamfillquery-bamfillquery.o biobambam2/bamfillquery-Licensing.o biobambam2/bamfillquery-AttachRank.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception 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biobambam2/bamrefextract-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrefextract programs/bamrefextract-bamrefextract.o biobambam2/bamrefextract-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastqtobam2-fastqtobam2.o `test -f 'programs/fastqtobam2.cpp' || echo './'`programs/fastqtobam2.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobam2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobam2-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobam2-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o fastqtobam2 programs/fastqtobam2-fastqtobam2.o biobambam2/fastqtobam2-Licensing.o biobambam2/fastqtobam2-KmerPoisson.o biobambam2/fastqtobam2-RunEOFFilter.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastqtobam2 programs/fastqtobam2-fastqtobam2.o biobambam2/fastqtobam2-Licensing.o biobambam2/fastqtobam2-KmerPoisson.o biobambam2/fastqtobam2-RunEOFFilter.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxmerge2-bamauxmerge2.o `test -f 'programs/bamauxmerge2.cpp' || echo './'`programs/bamauxmerge2.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxmerge2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxmerge2-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamauxmerge2 programs/bamauxmerge2-bamauxmerge2.o biobambam2/bamauxmerge2-Licensing.o biobambam2/bamauxmerge2-KmerPoisson.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxmerge2 programs/bamauxmerge2-bamauxmerge2.o biobambam2/bamauxmerge2-Licensing.o biobambam2/bamauxmerge2-KmerPoisson.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreheader-bamreheader.o `test -f 'programs/bamreheader.cpp' || echo './'`programs/bamreheader.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamreheader programs/bamreheader-bamreheader.o biobambam2/bamreheader-Licensing.o biobambam2/bamreheader-ReadHeader.o biobambam2/bamreheader-RunEOFFilter.o biobambam2/bamreheader-UpdateNumericalIndex.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamreheader programs/bamreheader-bamreheader.o biobambam2/bamreheader-Licensing.o biobambam2/bamreheader-ReadHeader.o biobambam2/bamreheader-RunEOFFilter.o biobambam2/bamreheader-UpdateNumericalIndex.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreplacechecksums-bamreplacechecksums.o `test -f 'programs/bamreplacechecksums.cpp' || echo './'`programs/bamreplacechecksums.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamreplacechecksums programs/bamreplacechecksums-bamreplacechecksums.o biobambam2/bamreplacechecksums-Licensing.o biobambam2/bamreplacechecksums-ReadHeader.o biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamreplacechecksums programs/bamreplacechecksums-bamreplacechecksums.o biobambam2/bamreplacechecksums-Licensing.o biobambam2/bamreplacechecksums-ReadHeader.o biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastcat-bamfastcat.o `test -f 'programs/bamfastcat.cpp' || echo './'`programs/bamfastcat.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamfastcat programs/bamfastcat-bamfastcat.o biobambam2/bamfastcat-Licensing.o biobambam2/bamfastcat-ReadHeader.o biobambam2/bamfastcat-RunEOFFilter.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfastcat programs/bamfastcat-bamfastcat.o biobambam2/bamfastcat-Licensing.o biobambam2/bamfastcat-ReadHeader.o biobambam2/bamfastcat-RunEOFFilter.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/populaterefcache-populaterefcache.o `test -f 'programs/populaterefcache.cpp' || echo './'`programs/populaterefcache.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/populaterefcache-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o populaterefcache programs/populaterefcache-populaterefcache.o biobambam2/populaterefcache-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o populaterefcache programs/populaterefcache-populaterefcache.o biobambam2/populaterefcache-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfiltereofblocks-bamfiltereofblocks.o `test -f 'programs/bamfiltereofblocks.cpp' || echo './'`programs/bamfiltereofblocks.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfiltereofblocks-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfiltereofblocks-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamfiltereofblocks programs/bamfiltereofblocks-bamfiltereofblocks.o biobambam2/bamfiltereofblocks-Licensing.o biobambam2/bamfiltereofblocks-RunEOFFilter.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfiltereofblocks programs/bamfiltereofblocks-bamfiltereofblocks.o biobambam2/bamfiltereofblocks-Licensing.o biobambam2/bamfiltereofblocks-RunEOFFilter.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdepth-bamdepth.o `test -f 'programs/bamdepth.cpp' || echo './'`programs/bamdepth.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepth-Licensing.o `test -f 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-std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdepth programs/bamdepth-bamdepth.o biobambam2/bamdepth-Licensing.o biobambam2/bamdepth-DepthInterval.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdepthintersect-bamdepthintersect.o `test -f 'programs/bamdepthintersect.cpp' || echo './'`programs/bamdepthintersect.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepthintersect-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepthintersect-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamdepthintersect programs/bamdepthintersect-bamdepthintersect.o biobambam2/bamdepthintersect-Licensing.o biobambam2/bamdepthintersect-DepthInterval.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdepthintersect programs/bamdepthintersect-bamdepthintersect.o biobambam2/bamdepthintersect-Licensing.o biobambam2/bamdepthintersect-DepthInterval.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterk-bamfilterk.o `test -f 'programs/bamfilterk.cpp' || echo './'`programs/bamfilterk.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterk-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. 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-fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixpairinfo-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixpairinfo-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixpairinfo-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. 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bamfilter programs/bamfilter-bamfilter.o biobambam2/bamfilter-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterbyname-bamfilterbyname.o `test -f 'programs/bamfilterbyname.cpp' || echo './'`programs/bamfilterbyname.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterbyname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. 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-O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamfixmatecoordinatesnamesorted programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfixmatecoordinatesnamesorted programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtoname-bamtoname.o `test -f 'programs/bamtoname.cpp' || echo './'`programs/bamtoname.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtoname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 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-fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamheap2 programs/bamheap2-bamheap2.o biobambam2/bamheap2-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamheap3-bamheap3.o `test -f 'programs/bamheap3.cpp' || echo './'`programs/bamheap3.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamheap3-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX 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biobambam2/vcffilterinfo-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o vcffilterinfo programs/vcffilterinfo-vcffilterinfo.o biobambam2/vcffilterinfo-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcffilterinfo programs/vcffilterinfo-vcffilterinfo.o biobambam2/vcffilterinfo-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 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biobambam2/vcfconcat-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfsort-vcfsort.o `test -f 'programs/vcfsort.cpp' || echo './'`programs/vcfsort.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/vcfsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now 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programs/bamconsensus-bamconsensus.o biobambam2/bamconsensus-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamconsensus programs/bamconsensus-bamconsensus.o biobambam2/bamconsensus-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/vcfreplacecontigs-vcfreplacecontigs.o `test -f 'programs/vcfreplacecontigs.cpp' || echo 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-O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o vcffiltersamples programs/vcffiltersamples-vcffiltersamples.o biobambam2/vcffiltersamples-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o vcffiltersamples programs/vcffiltersamples-vcffiltersamples.o biobambam2/vcffiltersamples-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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biobambam2/fastaselectreg-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o fastaselectreg programs/fastaselectreg-fastaselectreg.o biobambam2/fastaselectreg-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastaselectreg programs/fastaselectreg-fastaselectreg.o biobambam2/fastaselectreg-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamaddne-bamaddne.o `test -f 'programs/bamaddne.cpp' || echo './'`programs/bamaddne.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamaddne-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamaddne programs/bamaddne-bamaddne.o biobambam2/bamaddne-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamaddne programs/bamaddne-bamaddne.o biobambam2/bamaddne-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterhistogram-bamadapterhistogram.o `test -f 'programs/bamadapterhistogram.cpp' || echo './'`programs/bamadapterhistogram.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterhistogram-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamadapterhistogram programs/bamadapterhistogram-bamadapterhistogram.o biobambam2/bamadapterhistogram-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamadapterhistogram programs/bamadapterhistogram-bamadapterhistogram.o biobambam2/bamadapterhistogram-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsalvage-bamsalvage.o `test -f 'programs/bamsalvage.cpp' || echo './'`programs/bamsalvage.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsalvage-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamsalvage programs/bamsalvage-bamsalvage.o biobambam2/bamsalvage-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsalvage programs/bamsalvage-bamsalvage.o biobambam2/bamsalvage-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/biobambam2/ -a make -j1 install DESTDIR=/<>/biobambam2-2.0.185\+ds/debian/biobambam2 AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/biobambam2/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c bamtofastq bammarkduplicates bamsort bammaskflags bamrecompress bamadapterfind bamfilteraux bamauxsort bamadapterclip bamcollate2 bam12auxmerge bam12split bam12strip bamreset bamrank bamclipreinsert bamclipXT bamzztoname bamindex bamfilterflags bamfilterrg bamdownsamplerandom bammarkduplicates2 bamcat bammerge bamsplit bamfastsplit bamsplitdiv bamchecksort fastqtobam bamfixmateinformation bamseqchksum normalisefasta bamfilterheader bamfilterheader2 bammdnm bammapdist bamvalidate bamflagsplit bamintervalcomment bamintervalcommenthist bamstreamingmarkduplicates bamalignfrac bamfilternames bamsormadup bamexplode bamexploderef bamfastexploderef bamfastnumextract bamranksort fastaexplod bamrecalculatecigar bamfiltermc bamnumericalindex bamnumericalindexstats bammarkduplicatesopt bamfilterlength bamauxmerge bamrefinterval bamscrapcount bamfilterrefid bamfillquery bamrefextract fastqtobam2 bamauxmerge2 bamreheader bamreplacechecksums bamfastcat populaterefcache bamfiltereofblocks bamdepth bamdepthintersect bamfilterk bamfixpairinfo bamdifference bamfeaturecount '/<>/debian/biobambam2/usr/bin' libtool: install: /usr/bin/install -c bamtofastq /<>/debian/biobambam2/usr/bin/bamtofastq libtool: install: /usr/bin/install -c bammarkduplicates /<>/debian/biobambam2/usr/bin/bammarkduplicates libtool: install: /usr/bin/install -c bamsort /<>/debian/biobambam2/usr/bin/bamsort libtool: install: /usr/bin/install -c bammaskflags /<>/debian/biobambam2/usr/bin/bammaskflags libtool: install: /usr/bin/install -c bamrecompress /<>/debian/biobambam2/usr/bin/bamrecompress libtool: install: /usr/bin/install -c bamadapterfind /<>/debian/biobambam2/usr/bin/bamadapterfind libtool: install: /usr/bin/install -c bamfilteraux /<>/debian/biobambam2/usr/bin/bamfilteraux libtool: install: /usr/bin/install -c bamauxsort /<>/debian/biobambam2/usr/bin/bamauxsort libtool: install: /usr/bin/install -c bamadapterclip /<>/debian/biobambam2/usr/bin/bamadapterclip libtool: install: /usr/bin/install -c bamcollate2 /<>/debian/biobambam2/usr/bin/bamcollate2 libtool: install: /usr/bin/install -c bam12auxmerge /<>/debian/biobambam2/usr/bin/bam12auxmerge libtool: install: /usr/bin/install -c bam12split /<>/debian/biobambam2/usr/bin/bam12split libtool: install: /usr/bin/install -c bam12strip /<>/debian/biobambam2/usr/bin/bam12strip libtool: install: /usr/bin/install -c bamreset /<>/debian/biobambam2/usr/bin/bamreset libtool: install: /usr/bin/install -c bamrank /<>/debian/biobambam2/usr/bin/bamrank libtool: install: /usr/bin/install -c bamclipreinsert /<>/debian/biobambam2/usr/bin/bamclipreinsert libtool: install: /usr/bin/install -c bamclipXT /<>/debian/biobambam2/usr/bin/bamclipXT libtool: install: /usr/bin/install -c bamzztoname /<>/debian/biobambam2/usr/bin/bamzztoname libtool: install: /usr/bin/install -c bamindex /<>/debian/biobambam2/usr/bin/bamindex libtool: install: /usr/bin/install -c bamfilterflags /<>/debian/biobambam2/usr/bin/bamfilterflags libtool: install: /usr/bin/install -c bamfilterrg /<>/debian/biobambam2/usr/bin/bamfilterrg libtool: install: /usr/bin/install -c bamdownsamplerandom /<>/debian/biobambam2/usr/bin/bamdownsamplerandom libtool: install: /usr/bin/install -c bammarkduplicates2 /<>/debian/biobambam2/usr/bin/bammarkduplicates2 libtool: install: /usr/bin/install -c bamcat /<>/debian/biobambam2/usr/bin/bamcat libtool: install: /usr/bin/install -c bammerge /<>/debian/biobambam2/usr/bin/bammerge libtool: install: /usr/bin/install -c bamsplit /<>/debian/biobambam2/usr/bin/bamsplit libtool: install: /usr/bin/install -c bamfastsplit /<>/debian/biobambam2/usr/bin/bamfastsplit libtool: install: /usr/bin/install -c bamsplitdiv /<>/debian/biobambam2/usr/bin/bamsplitdiv libtool: install: /usr/bin/install -c bamchecksort /<>/debian/biobambam2/usr/bin/bamchecksort libtool: install: /usr/bin/install -c fastqtobam /<>/debian/biobambam2/usr/bin/fastqtobam libtool: install: /usr/bin/install -c bamfixmateinformation /<>/debian/biobambam2/usr/bin/bamfixmateinformation libtool: install: /usr/bin/install -c bamseqchksum /<>/debian/biobambam2/usr/bin/bamseqchksum libtool: install: /usr/bin/install -c normalisefasta /<>/debian/biobambam2/usr/bin/normalisefasta libtool: install: /usr/bin/install -c bamfilterheader /<>/debian/biobambam2/usr/bin/bamfilterheader libtool: install: /usr/bin/install -c bamfilterheader2 /<>/debian/biobambam2/usr/bin/bamfilterheader2 libtool: install: /usr/bin/install -c bammdnm /<>/debian/biobambam2/usr/bin/bammdnm libtool: install: /usr/bin/install -c bammapdist /<>/debian/biobambam2/usr/bin/bammapdist libtool: install: /usr/bin/install -c bamvalidate /<>/debian/biobambam2/usr/bin/bamvalidate libtool: install: /usr/bin/install -c bamflagsplit /<>/debian/biobambam2/usr/bin/bamflagsplit libtool: install: /usr/bin/install -c bamintervalcomment /<>/debian/biobambam2/usr/bin/bamintervalcomment libtool: install: /usr/bin/install -c bamintervalcommenthist /<>/debian/biobambam2/usr/bin/bamintervalcommenthist libtool: install: /usr/bin/install -c bamstreamingmarkduplicates /<>/debian/biobambam2/usr/bin/bamstreamingmarkduplicates libtool: install: /usr/bin/install -c bamalignfrac /<>/debian/biobambam2/usr/bin/bamalignfrac libtool: install: /usr/bin/install -c bamfilternames /<>/debian/biobambam2/usr/bin/bamfilternames libtool: install: /usr/bin/install -c bamsormadup /<>/debian/biobambam2/usr/bin/bamsormadup libtool: install: /usr/bin/install -c bamexplode /<>/debian/biobambam2/usr/bin/bamexplode libtool: install: /usr/bin/install -c bamexploderef /<>/debian/biobambam2/usr/bin/bamexploderef libtool: install: /usr/bin/install -c bamfastexploderef /<>/debian/biobambam2/usr/bin/bamfastexploderef libtool: install: /usr/bin/install -c bamfastnumextract /<>/debian/biobambam2/usr/bin/bamfastnumextract libtool: install: /usr/bin/install -c bamranksort /<>/debian/biobambam2/usr/bin/bamranksort libtool: install: /usr/bin/install -c fastaexplod /<>/debian/biobambam2/usr/bin/fastaexplod libtool: install: /usr/bin/install -c bamrecalculatecigar /<>/debian/biobambam2/usr/bin/bamrecalculatecigar libtool: install: /usr/bin/install -c bamfiltermc /<>/debian/biobambam2/usr/bin/bamfiltermc libtool: install: /usr/bin/install -c bamnumericalindex /<>/debian/biobambam2/usr/bin/bamnumericalindex libtool: install: /usr/bin/install -c bamnumericalindexstats /<>/debian/biobambam2/usr/bin/bamnumericalindexstats libtool: install: /usr/bin/install -c bammarkduplicatesopt /<>/debian/biobambam2/usr/bin/bammarkduplicatesopt libtool: install: /usr/bin/install -c bamfilterlength /<>/debian/biobambam2/usr/bin/bamfilterlength libtool: install: /usr/bin/install -c bamauxmerge /<>/debian/biobambam2/usr/bin/bamauxmerge libtool: install: /usr/bin/install -c bamrefinterval /<>/debian/biobambam2/usr/bin/bamrefinterval libtool: install: /usr/bin/install -c bamscrapcount /<>/debian/biobambam2/usr/bin/bamscrapcount libtool: install: /usr/bin/install -c bamfilterrefid /<>/debian/biobambam2/usr/bin/bamfilterrefid libtool: install: /usr/bin/install -c bamfillquery /<>/debian/biobambam2/usr/bin/bamfillquery libtool: install: /usr/bin/install -c bamrefextract /<>/debian/biobambam2/usr/bin/bamrefextract libtool: install: /usr/bin/install -c fastqtobam2 /<>/debian/biobambam2/usr/bin/fastqtobam2 libtool: install: /usr/bin/install -c bamauxmerge2 /<>/debian/biobambam2/usr/bin/bamauxmerge2 libtool: install: /usr/bin/install -c bamreheader /<>/debian/biobambam2/usr/bin/bamreheader libtool: install: /usr/bin/install -c bamreplacechecksums /<>/debian/biobambam2/usr/bin/bamreplacechecksums libtool: install: /usr/bin/install -c bamfastcat /<>/debian/biobambam2/usr/bin/bamfastcat libtool: install: /usr/bin/install -c populaterefcache /<>/debian/biobambam2/usr/bin/populaterefcache libtool: install: /usr/bin/install -c bamfiltereofblocks /<>/debian/biobambam2/usr/bin/bamfiltereofblocks libtool: install: /usr/bin/install -c bamdepth /<>/debian/biobambam2/usr/bin/bamdepth libtool: install: /usr/bin/install -c bamdepthintersect /<>/debian/biobambam2/usr/bin/bamdepthintersect libtool: install: /usr/bin/install -c bamfilterk /<>/debian/biobambam2/usr/bin/bamfilterk libtool: install: /usr/bin/install -c bamfixpairinfo /<>/debian/biobambam2/usr/bin/bamfixpairinfo libtool: install: /usr/bin/install -c bamdifference /<>/debian/biobambam2/usr/bin/bamdifference libtool: install: /usr/bin/install -c bamfeaturecount /<>/debian/biobambam2/usr/bin/bamfeaturecount /usr/bin/mkdir -p '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/bamtofastq.1 programs/bamsort.1 programs/bammarkduplicates.1 programs/bammarkduplicatesopt.1 programs/bammaskflags.1 programs/bamrecompress.1 programs/bamadapterfind.1 programs/bamfilteraux.1 programs/bamauxsort.1 programs/bamadapterclip.1 programs/bamcollate2.1 programs/bam12auxmerge.1 programs/bam12split.1 programs/bam12strip.1 programs/bamreset.1 programs/bamrank.1 programs/bamclipreinsert.1 programs/bamzztoname.1 programs/bamindex.1 programs/bamfilterflags.1 programs/bamfilterrg.1 programs/bamdownsamplerandom.1 programs/bammarkduplicates2.1 programs/bamcat.1 programs/bammerge.1 programs/bamsplit.1 programs/bamsplitdiv.1 programs/bamchecksort.1 programs/fastqtobam.1 programs/bamfixmateinformation.1 programs/normalisefasta.1 programs/bamfilterheader.1 programs/bamfilterheader2.1 programs/bammdnm.1 programs/bamseqchksum.1 programs/bamvalidate.1 programs/bamflagsplit.1 programs/bamintervalcomment.1 programs/bamstreamingmarkduplicates.1 programs/bamsormadup.1 '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/fastaexplod.1 programs/bamrecalculatecigar.1 programs/bamfiltermc.1 programs/bamfillquery.1 programs/bamalignfrac.1 programs/bamauxmerge.1 programs/bamauxmerge2.1 programs/bambisect.1 programs/bamclipXT.1 programs/bamconsensus.1 programs/filtergtf.1 programs/bamfeaturecount.1 '/<>/debian/biobambam2/usr/share/man/man1' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bamexploderef debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamzztoname debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bamfastcat debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamauxmerge debian/biobambam2/usr/bin/fastqtobam2 debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/bamdepthintersect debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamnumericalindexstats debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bamreheader debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamfastnumextract debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamfastsplit debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/bamfilterk debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bamreplacechecksums debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamfixpairinfo debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bamfastexploderef debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamfiltereofblocks debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/populaterefcache debian/biobambam2/usr/bin/bamdepth debian/biobambam2/usr/bin/bamclipXT debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/fastaexplod debian/biobambam2/usr/bin/bamdifference debian/biobambam2/usr/bin/bamfeaturecount debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamauxmerge2 debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/bamrefinterval were not linked against libmaus2_simd_align_256.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bamexploderef debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamzztoname debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bamfastcat debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamauxmerge debian/biobambam2/usr/bin/fastqtobam2 debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/bamdepthintersect debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamnumericalindexstats debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bamreheader debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamfastnumextract debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamfastsplit debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/bamfilterk debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bamreplacechecksums debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamfixpairinfo debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bamfastexploderef debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamfiltereofblocks debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/populaterefcache debian/biobambam2/usr/bin/bamdepth debian/biobambam2/usr/bin/bamclipXT debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/fastaexplod debian/biobambam2/usr/bin/bamdifference debian/biobambam2/usr/bin/bamfeaturecount debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamauxmerge2 debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/bamrefinterval were not linked against libmaus2_simd_align_128.so.2 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'biobambam2' in '../biobambam2_2.0.185+ds-2_i386.deb'. dpkg-deb: building package 'biobambam2-dbgsym' in '../biobambam2-dbgsym_2.0.185+ds-2_i386.deb'. dpkg-genbuildinfo --build=any -O../biobambam2_2.0.185+ds-2_i386.buildinfo dpkg-genchanges --build=any -O../biobambam2_2.0.185+ds-2_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-06-28T14:02:40Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ biobambam2_2.0.185+ds-2_i386.changes: ------------------------------------- Format: 1.8 Date: Fri, 19 Apr 2024 17:24:26 +0200 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 2.0.185+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: biobambam2 - tools for early stage alignment file processing Changes: biobambam2 (2.0.185+ds-2) unstable; urgency=medium . * d/watch: repair gitlab watch file. This instructs uscan to use git ls-remote mode. * d/control: declare compliance to standards version 4.7.0. * d/control: move from pkg-config to pkgconf. Checksums-Sha1: bde36e03eb782acb5b0c436cfd69b4ca59a526cb 199669136 biobambam2-dbgsym_2.0.185+ds-2_i386.deb 7ce934c167fb21ae73bb4e4b7fe2d57ab72c440e 6543 biobambam2_2.0.185+ds-2_i386.buildinfo 6b208e91d2a24b3b818f32ff9d67c10cf367f8e1 8867348 biobambam2_2.0.185+ds-2_i386.deb Checksums-Sha256: 127ff61d575ea37afa400a05f21f807cfce0475e39475d6e1143cb6c0fa459eb 199669136 biobambam2-dbgsym_2.0.185+ds-2_i386.deb 2eb496191f957359a49f9c22cff58bebf1b91915607001cdfeaad54b870760ac 6543 biobambam2_2.0.185+ds-2_i386.buildinfo cd53bfb6e4d47dc5908527ce4da9160fdca9ec2982a662cc005d0d5963afce0d 8867348 biobambam2_2.0.185+ds-2_i386.deb Files: 4a9d73b83f9052f9f8fe4b422a7db8aa 199669136 debug optional biobambam2-dbgsym_2.0.185+ds-2_i386.deb 5fe95a6f438797c492d3aa7cfd0a2fd8 6543 science optional biobambam2_2.0.185+ds-2_i386.buildinfo 492fb90ca4b53e114717832683c229a0 8867348 science optional biobambam2_2.0.185+ds-2_i386.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Architecture: i386 Version: 2.0.185+ds-2 Checksums-Md5: 4a9d73b83f9052f9f8fe4b422a7db8aa 199669136 biobambam2-dbgsym_2.0.185+ds-2_i386.deb 492fb90ca4b53e114717832683c229a0 8867348 biobambam2_2.0.185+ds-2_i386.deb Checksums-Sha1: bde36e03eb782acb5b0c436cfd69b4ca59a526cb 199669136 biobambam2-dbgsym_2.0.185+ds-2_i386.deb 6b208e91d2a24b3b818f32ff9d67c10cf367f8e1 8867348 biobambam2_2.0.185+ds-2_i386.deb Checksums-Sha256: 127ff61d575ea37afa400a05f21f807cfce0475e39475d6e1143cb6c0fa459eb 199669136 biobambam2-dbgsym_2.0.185+ds-2_i386.deb cd53bfb6e4d47dc5908527ce4da9160fdca9ec2982a662cc005d0d5963afce0d 8867348 biobambam2_2.0.185+ds-2_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Fri, 28 Jun 2024 14:02:34 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: adduser (= 3.137), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-1), autotools-dev (= 20220109.1), base-files (= 13.3), base-passwd (= 3.6.3), bash (= 5.2.21-2.1), binutils (= 2.42.50.20240625-1), binutils-aarch64-linux-gnu (= 2.42.50.20240625-1), binutils-common (= 2.42.50.20240625-1), bsdextrautils (= 2.40.1-9), bsdutils (= 1:2.40.1-9), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.3.0-1), cpp-13-aarch64-linux-gnu (= 13.3.0-1), cpp-aarch64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-9), debconf (= 1.5.86), debhelper (= 13.16), debianutils (= 5.19), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dirmngr (= 2.2.43-7), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), g++ (= 4:13.2.0-7), g++-13 (= 13.3.0-1), g++-13-aarch64-linux-gnu (= 13.3.0-1), g++-aarch64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.3.0-1), gcc-13-aarch64-linux-gnu (= 13.3.0-1), gcc-13-base (= 13.3.0-1), gcc-14-base (= 14.1.0-2), gcc-aarch64-linux-gnu (= 4:13.2.0-7), gettext (= 0.22.5-1), gettext-base (= 0.22.5-1), gnupg (= 2.2.43-7), gnupg-l10n (= 2.2.43-7), gpg (= 2.2.43-7), gpg-agent (= 2.2.43-7), gpgconf (= 2.2.43-7), gpgsm (= 2.2.43-7), grep (= 3.11-4), groff-base (= 1.23.0-4), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), icu-devtools (= 72.1-4+b1), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.1.0-2), libassuan0 (= 2.5.6-1+b1), libatomic1 (= 14.1.0-2), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4), libbinutils (= 2.42.50.20240625-1), libblkid1 (= 2.40.1-9), libbrotli1 (= 1.1.0-2+b3), libbsd0 (= 0.12.2-1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.38-13), libc-dev-bin (= 2.38-13), libc6 (= 2.38-13), libc6-dev (= 2.38-13), libcap-ng0 (= 0.8.5-1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.1.0-2), libcom-err2 (= 1.47.1-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42.50.20240625-1), libctf0 (= 2.42.50.20240625-1), libcurl3t64-gnutls (= 8.8.0-1), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-1), libgcc-s1 (= 14.1.0-2), libgcrypt20 (= 1.10.3-3), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.5-4), libgomp1 (= 14.1.0-2), libgpg-error0 (= 1.49-2), libgpgme11t64 (= 1.18.0-4.1+b1), libgprofng0 (= 2.42.50.20240625-1), libgssapi-krb5-2 (= 1.21.2-1), libhogweed6t64 (= 3.10-1), libhwasan0 (= 14.1.0-2), libicu-dev (= 72.1-4+b1), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14.1.0-2), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.21.2-1), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.21.2-1), libkrb5support0 (= 1.21.2-1), libksba8 (= 1.6.6-1), libldap-2.5-0 (= 2.5.18+dfsg-1), liblsan0 (= 14.1.0-2), liblzma5 (= 5.6.2-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmaus2-2 (= 2.0.813+ds-3), libmaus2-dev (= 2.0.813+ds-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.1-9), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.5-2), libnettle8t64 (= 3.10-1), libnghttp2-14 (= 1.62.1-1), libnpth0t64 (= 1.6-3.1), libp11-kit0 (= 0.25.3-5), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-5), libpipeline1 (= 1.5.7-2), libpkgconf3 (= 1.8.1-3), libpsl5t64 (= 0.21.2-1.1), libreadline8t64 (= 8.2-4), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4), libsasl2-2 (= 2.1.28+dfsg1-6), libsasl2-modules-db (= 2.1.28+dfsg1-6), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1+b3), libsepol2 (= 3.5-2+b1), libsframe1 (= 2.42.50.20240625-1), libsmartcols1 (= 2.40.1-9), libsqlite3-0 (= 3.46.0-1), libssh2-1t64 (= 1.11.0-5), libssl3t64 (= 3.2.2-1), libstdc++-13-dev (= 13.3.0-1), libstdc++6 (= 14.1.0-2), libsystemd0 (= 256.1-2), libtasn1-6 (= 4.19.0-3+b2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.1.0-2), libubsan1 (= 14.1.0-2), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.1-2), libunistring5 (= 1.2-1), libuuid1 (= 2.40.1-9), libxerces-c-dev (= 3.2.4+debian-1.3), libxerces-c3.2t64 (= 3.2.4+debian-1.3), libxml2 (= 2.12.7+dfsg-3), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.9.7-1), login (= 1:4.15.2-3), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), passwd (= 1:4.15.2-3), patch (= 2.7.6-7), perl (= 5.38.2-5), perl-base (= 5.38.2-5), perl-modules-5.38 (= 5.38.2-5), pinentry-curses (= 1.2.1-3+b2), pkgconf (= 1.8.1-3), pkgconf-bin (= 1.8.1-3), po-debconf (= 1.0.21+nmu1), readline-common (= 8.2-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), util-linux (= 2.40.1-9), xz-utils (= 5.6.2-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1713540266" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ biobambam2-dbgsym_2.0.185+ds-2_i386.deb --------------------------------------- new Debian package, version 2.0. size 199669136 bytes: control archive=3988 bytes. 3469 bytes, 12 lines control 8141 bytes, 77 lines md5sums Package: biobambam2-dbgsym Source: biobambam2 Version: 2.0.185+ds-2 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 207566 Depends: biobambam2 (= 2.0.185+ds-2) Section: debug Priority: optional Description: debug symbols for biobambam2 Build-Ids: 0090eb7cbef13d6097956c557113759188ffb6f0 009727828ec22bbce7974da47f06d50e7e0d244f 020b77c589182bc51d110d638e274fc245416f19 05feabed733f05e5ec12da3ffaa3d3adc5037bb9 074dd3ab4616c9c57c8fef7dccc5f1ff3a9b2a6f 1872471ce13b683f504bde53fbb0ddad3174d61d 1a29c8bc529dfb949e92ba42a39726dcfef70bfa 1a3a6f9793d9254004fd806ecf486bcf0f2313b0 1b40d69af9516d2c2eb414ce30f6c0489e8f633d 201a406c211905fbb942a4b252837ae32de7aa39 21408e05209fd0a6851ff1aaea7a048de4f1f299 2656e59f242f6e3e8e42d360ba0ecd5b132a20a7 2ddc49f86c37e59086d9316f33fc39b15ed41bde 2e22a09c29e81fa1708b43dea2c2dc97dc7ba20d 2fdb27cd20c38b8660d3613b800824d5f56b59f7 320ac5157eb78727e8d605410ea68da5f7e05387 3381bb65f0bb64c740d393ebcfbdf9301d140b30 33fc3615032cca54821f715139bf6d29207bd371 3a32f5c5263fe9ffca21e2e257c8d21158d8a372 477dbad241a8e1a1757f5f52cbb2511069768122 49db9cb8e1a4d5e681b506d0ac64ce2275e7e92e 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./usr/lib/debug/.build-id/f7/615216c9c9966eb57dff20e267a85da18d4b3e.debug drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/lib/debug/.build-id/f8/ -rw-r--r-- root/root 2644700 2024-04-19 15:24 ./usr/lib/debug/.build-id/f8/07ba0490f809d3da1e0509c8856753d07b86e8.debug drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/lib/debug/.build-id/ff/ -rw-r--r-- root/root 2753928 2024-04-19 15:24 ./usr/lib/debug/.build-id/ff/245a937a0cafdc6d5647d82a25e92b3013482b.debug drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/lib/debug/.dwz/i386-linux-gnu/ -rw-r--r-- root/root 4677988 2024-04-19 15:24 ./usr/lib/debug/.dwz/i386-linux-gnu/biobambam2.debug drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/ drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-04-19 15:24 ./usr/share/doc/biobambam2-dbgsym -> biobambam2 biobambam2_2.0.185+ds-2_i386.deb -------------------------------- new Debian package, version 2.0. size 8867348 bytes: control archive=4332 bytes. 1282 bytes, 25 lines control 8885 bytes, 140 lines md5sums Package: biobambam2 Version: 2.0.185+ds-2 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 61691 Depends: libc6 (>= 2.34), libgcc-s1 (>= 7), libgomp1 (>= 6), libmaus2-2 (>= 2.0.813+ds), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://gitlab.com/german.tischler/biobambam2 Description: tools for early stage alignment file processing This package contains some tools for processing BAM files, including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name drwxr-xr-x root/root 0 2024-04-19 15:24 ./ drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/ drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/bin/ -rwxr-xr-x root/root 1005696 2024-04-19 15:24 ./usr/bin/bam12auxmerge -rwxr-xr-x root/root 895104 2024-04-19 15:24 ./usr/bin/bam12split -rwxr-xr-x root/root 895104 2024-04-19 15:24 ./usr/bin/bam12strip -rwxr-xr-x root/root 915584 2024-04-19 15:24 ./usr/bin/bamadapterclip -rwxr-xr-x root/root 1058944 2024-04-19 15:24 ./usr/bin/bamadapterfind -rwxr-xr-x root/root 788608 2024-04-19 15:24 ./usr/bin/bamalignfrac -rwxr-xr-x root/root 952448 2024-04-19 15:24 ./usr/bin/bamauxmerge -rwxr-xr-x root/root 587368 2024-04-19 15:24 ./usr/bin/bamauxmerge2 -rwxr-xr-x root/root 903296 2024-04-19 15:24 ./usr/bin/bamauxsort -rwxr-xr-x root/root 882816 2024-04-19 15:24 ./usr/bin/bamcat -rwxr-xr-x root/root 759936 2024-04-19 15:24 ./usr/bin/bamchecksort -rwxr-xr-x root/root 841856 2024-04-19 15:24 ./usr/bin/bamclipXT -rwxr-xr-x root/root 927872 2024-04-19 15:24 ./usr/bin/bamclipreinsert -rwxr-xr-x root/root 1095808 2024-04-19 15:24 ./usr/bin/bamcollate2 -rwxr-xr-x root/root 780416 2024-04-19 15:24 ./usr/bin/bamdepth -rwxr-xr-x root/root 833664 2024-04-19 15:24 ./usr/bin/bamdepthintersect -rwxr-xr-x root/root 862336 2024-04-19 15:24 ./usr/bin/bamdifference -rwxr-xr-x root/root 1034368 2024-04-19 15:24 ./usr/bin/bamdownsamplerandom -rwxr-xr-x root/root 829568 2024-04-19 15:24 ./usr/bin/bamexplode -rwxr-xr-x root/root 649344 2024-04-19 15:24 ./usr/bin/bamexploderef -rwxr-xr-x root/root 411772 2024-04-19 15:24 ./usr/bin/bamfastcat -rwxr-xr-x root/root 780416 2024-04-19 15:24 ./usr/bin/bamfastexploderef -rwxr-xr-x root/root 419968 2024-04-19 15:24 ./usr/bin/bamfastnumextract -rwxr-xr-x root/root 419968 2024-04-19 15:24 ./usr/bin/bamfastsplit -rwxr-xr-x root/root 1210540 2024-04-19 15:24 ./usr/bin/bamfeaturecount -rwxr-xr-x root/root 952448 2024-04-19 15:24 ./usr/bin/bamfillquery -rwxr-xr-x root/root 895104 2024-04-19 15:24 ./usr/bin/bamfilteraux -rwxr-xr-x root/root 46640 2024-04-19 15:24 ./usr/bin/bamfiltereofblocks -rwxr-xr-x root/root 952448 2024-04-19 15:24 ./usr/bin/bamfilterflags -rwxr-xr-x root/root 948352 2024-04-19 15:24 ./usr/bin/bamfilterheader -rwxr-xr-x root/root 218724 2024-04-19 15:24 ./usr/bin/bamfilterheader2 -rwxr-xr-x root/root 899200 2024-04-19 15:24 ./usr/bin/bamfilterk -rwxr-xr-x root/root 931968 2024-04-19 15:24 ./usr/bin/bamfilterlength -rwxr-xr-x root/root 940160 2024-04-19 15:24 ./usr/bin/bamfiltermc -rwxr-xr-x root/root 891008 2024-04-19 15:24 ./usr/bin/bamfilternames -rwxr-xr-x root/root 891008 2024-04-19 15:24 ./usr/bin/bamfilterrefid -rwxr-xr-x root/root 891008 2024-04-19 15:24 ./usr/bin/bamfilterrg -rwxr-xr-x root/root 854144 2024-04-19 15:24 ./usr/bin/bamfixmateinformation -rwxr-xr-x root/root 940160 2024-04-19 15:24 ./usr/bin/bamfixpairinfo -rwxr-xr-x root/root 841856 2024-04-19 15:24 ./usr/bin/bamflagsplit -rwxr-xr-x root/root 411772 2024-04-19 15:24 ./usr/bin/bamindex -rwxr-xr-x root/root 1022080 2024-04-19 15:24 ./usr/bin/bamintervalcomment -rwxr-xr-x root/root 780416 2024-04-19 15:24 ./usr/bin/bamintervalcommenthist -rwxr-xr-x root/root 784512 2024-04-19 15:24 ./usr/bin/bammapdist -rwxr-xr-x root/root 1222784 2024-04-19 15:24 ./usr/bin/bammarkduplicates -rwxr-xr-x root/root 1267840 2024-04-19 15:24 ./usr/bin/bammarkduplicates2 -rwxr-xr-x root/root 1349760 2024-04-19 15:24 ./usr/bin/bammarkduplicatesopt -rwxr-xr-x root/root 895104 2024-04-19 15:24 ./usr/bin/bammaskflags -rwxr-xr-x root/root 600188 2024-04-19 15:24 ./usr/bin/bammdnm -rwxr-xr-x root/root 940160 2024-04-19 15:24 ./usr/bin/bammerge -rwxr-xr-x root/root 321660 2024-04-19 15:24 ./usr/bin/bamnumericalindex -rwxr-xr-x root/root 358528 2024-04-19 15:24 ./usr/bin/bamnumericalindexstats -rwxr-xr-x root/root 891008 2024-04-19 15:24 ./usr/bin/bamrank -rwxr-xr-x root/root 850048 2024-04-19 15:24 ./usr/bin/bamranksort -rwxr-xr-x root/root 960640 2024-04-19 15:24 ./usr/bin/bamrecalculatecigar -rwxr-xr-x root/root 501888 2024-04-19 15:24 ./usr/bin/bamrecompress -rwxr-xr-x root/root 833664 2024-04-19 15:24 ./usr/bin/bamrefextract -rwxr-xr-x root/root 927872 2024-04-19 15:24 ./usr/bin/bamrefinterval -rwxr-xr-x root/root 362608 2024-04-19 15:24 ./usr/bin/bamreheader -rwxr-xr-x root/root 370800 2024-04-19 15:24 ./usr/bin/bamreplacechecksums -rwxr-xr-x root/root 903296 2024-04-19 15:24 ./usr/bin/bamreset -rwxr-xr-x root/root 755840 2024-04-19 15:24 ./usr/bin/bamscrapcount -rwxr-xr-x root/root 825472 2024-04-19 15:24 ./usr/bin/bamseqchksum -rwxr-xr-x root/root 2132096 2024-04-19 15:24 ./usr/bin/bamsormadup -rwxr-xr-x root/root 1546368 2024-04-19 15:24 ./usr/bin/bamsort -rwxr-xr-x root/root 821376 2024-04-19 15:24 ./usr/bin/bamsplit -rwxr-xr-x root/root 780416 2024-04-19 15:24 ./usr/bin/bamsplitdiv -rwxr-xr-x root/root 1128576 2024-04-19 15:24 ./usr/bin/bamstreamingmarkduplicates -rwxr-xr-x root/root 1153152 2024-04-19 15:24 ./usr/bin/bamtofastq -rwxr-xr-x root/root 944256 2024-04-19 15:24 ./usr/bin/bamvalidate -rwxr-xr-x root/root 895104 2024-04-19 15:24 ./usr/bin/bamzztoname -rwxr-xr-x root/root 91748 2024-04-19 15:24 ./usr/bin/fastaexplod -rwxr-xr-x root/root 325224 2024-04-19 15:24 ./usr/bin/fastqtobam -rwxr-xr-x root/root 685672 2024-04-19 15:24 ./usr/bin/fastqtobam2 -rwxr-xr-x root/root 219260 2024-04-19 15:24 ./usr/bin/normalisefasta -rwxr-xr-x root/root 235644 2024-04-19 15:24 ./usr/bin/populaterefcache drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/ drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/doc/biobambam2/ lrwxrwxrwx root/root 0 2024-04-19 15:24 ./usr/share/doc/biobambam2/README.gz -> README.md.gz -rw-r--r-- root/root 2465 2022-12-11 19:21 ./usr/share/doc/biobambam2/README.md.gz -rw-r--r-- root/root 278 2024-04-19 15:24 ./usr/share/doc/biobambam2/README.test -rw-r--r-- root/root 623 2024-04-19 15:24 ./usr/share/doc/biobambam2/README.test-data -rw-r--r-- root/root 1602 2024-04-19 15:24 ./usr/share/doc/biobambam2/changelog.Debian.gz -rw-r--r-- root/root 4468 2022-12-11 19:21 ./usr/share/doc/biobambam2/changelog.gz -rw-r--r-- root/root 3250 2024-04-19 15:24 ./usr/share/doc/biobambam2/copyright drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/doc/biobambam2/examples/ -rw-r--r-- root/root 623 2024-04-19 15:24 ./usr/share/doc/biobambam2/examples/README.test-data -rw-r--r-- root/root 659193 2024-04-19 15:24 ./usr/share/doc/biobambam2/examples/SRR11728627.bam -rw-r--r-- root/root 365817 2024-04-19 15:24 ./usr/share/doc/biobambam2/examples/SRR11728641.bam -rw-r--r-- root/root 1764 2024-04-19 15:24 ./usr/share/doc/biobambam2/run-unit-test drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/man/ drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/man/man1/ -rw-r--r-- 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./usr/share/man/man1/bamranksort.1.gz -rw-r--r-- root/root 1507 2024-04-19 15:24 ./usr/share/man/man1/bamrecalculatecigar.1.gz -rw-r--r-- root/root 1065 2024-04-19 15:24 ./usr/share/man/man1/bamrecompress.1.gz -rw-r--r-- root/root 1732 2024-04-19 15:24 ./usr/share/man/man1/bamreset.1.gz -rw-r--r-- root/root 2194 2024-04-19 15:24 ./usr/share/man/man1/bamseqchksum.1.gz -rw-r--r-- root/root 2006 2024-04-19 15:24 ./usr/share/man/man1/bamsormadup.1.gz -rw-r--r-- root/root 3834 2024-04-19 15:24 ./usr/share/man/man1/bamsort.1.gz -rw-r--r-- root/root 951 2024-04-19 15:24 ./usr/share/man/man1/bamsplit.1.gz -rw-r--r-- root/root 982 2024-04-19 15:24 ./usr/share/man/man1/bamsplitdiv.1.gz -rw-r--r-- root/root 2096 2024-04-19 15:24 ./usr/share/man/man1/bamstreamingmarkduplicates.1.gz -rw-r--r-- root/root 1011 2024-04-19 15:24 ./usr/share/man/man1/bamtagconversion.1.gz -rw-r--r-- root/root 3269 2024-04-19 15:24 ./usr/share/man/man1/bamtofastq.1.gz -rw-r--r-- root/root 2033 2024-04-19 15:24 ./usr/share/man/man1/bamvalidate.1.gz -rw-r--r-- root/root 1088 2024-04-19 15:24 ./usr/share/man/man1/bamzztoname.1.gz -rw-r--r-- root/root 967 2024-04-19 15:24 ./usr/share/man/man1/fastaexplod.1.gz -rw-r--r-- root/root 2592 2024-04-19 15:24 ./usr/share/man/man1/fastqtobam.1.gz -rw-r--r-- root/root 671 2024-04-19 15:24 ./usr/share/man/man1/filtergtf.1.gz -rw-r--r-- root/root 1076 2024-04-19 15:24 ./usr/share/man/man1/normalisefasta.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1346 B] Get:5 copy:/<>/apt_archive ./ Packages [1423 B] Fetched 3384 B in 0s (189 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat iso-codes libaliased-perl libapt-pkg-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat iso-codes libaliased-perl libapt-pkg-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:i386 t1utils unzip 0 upgraded, 123 newly installed, 0 to remove and 0 not upgraded. Need to get 10.9 MB of archives. After this operation, 48.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.2.2-1 [1327 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.66-1 [31.6 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.16.0-1 [2936 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.40+b5 [63.8 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b1 [10.6 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-1 [16.0 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b3 [22.3 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:17 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1 [43.5 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.64-2+b3 [120 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.28-1 [98.6 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.82-1 [96.9 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.66-1 [217 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:26 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b3 [35.2 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.46-1+b2 [13.6 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3 [23.4 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:35 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.38-1 [127 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-1+b3 [31.2 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b3 [97.6 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.84-1 [23.7 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b3 [28.3 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libnumber-compare-perl all 0.03-3 [6332 B] Get:55 http://mirror.einval.org/debian unstable/main arm64 libtext-glob-perl all 0.11-3 [7676 B] Get:56 http://mirror.einval.org/debian unstable/main arm64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 6.46-1 [79.7 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:70 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-1+b1 [328 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.15~pre1-1 [37.7 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3 [48.9 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2+b1 [33.2 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:93 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.10-1+b5 [141 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b2 [11.2 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1+b2 [12.3 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b3 [17.4 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b2 [11.4 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1+b2 [41.6 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b2 [95.4 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b2 [97.6 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:106 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.42-1 [58.3 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.29-2 [26.6 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b3 [24.4 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b3 [8680 B] Get:110 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1+b2 [13.1 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2 [171 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b3 [72.2 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2+b2 [19.9 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1+b1 [49.0 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.89+ds-1+b1 [33.2 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.11-1 [58.8 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28 [157 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.9 MB in 1s (9826 kB/s) Selecting previously unselected package netbase. (Reading database ... 20772 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.2.2-1_arm64.deb ... Unpacking openssl (3.2.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../003-diffstat_1.66-1_arm64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../004-iso-codes_4.16.0-1_all.deb ... Unpacking iso-codes (4.16.0-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../005-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libapt-pkg-perl. 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Preparing to unpack .../120-unzip_6.0-28_arm64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package lintian. Preparing to unpack .../121-lintian_2.117.0_all.deb ... Unpacking lintian (2.117.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:i386. Preparing to unpack .../122-sbuild-build-depends-lintian-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b5) ... Setting up liblz1:arm64 (1.15~pre1-1) ... Setting up libberkeleydb-perl:arm64 (0.64-2+b3) ... Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.46-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.5-1+b1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:arm64 (4.38-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1) ... Setting up unzip (6.0-28) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.89+ds-1+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:arm64 (2.10-3) ... Setting up libtime-moment-perl (0.44-2+b3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.42-1) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1+b2) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.66-1) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b1) ... 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Setting up libdevel-callchecker-perl:arm64 (0.009-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.82-1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.66-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.38-13) ... Processing triggers for man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 3231896 Build-Time: 17551 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 62 Job: biobambam2_2.0.185+ds-2 Lintian: pass Machine Architecture: arm64 Package: biobambam2 Package-Time: 17656 Source-Version: 2.0.185+ds-2 Space: 3231896 Status: successful Version: 2.0.185+ds-2 -------------------------------------------------------------------------------- Finished at 2024-06-28T14:02:40Z Build needed 04:54:16, 3231896k disk space