sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | biobambam2 2.0.185+ds-2 (mips64el) Sun, 28 Apr 2024 13:56:27 +0000 | +==============================================================================+ Package: biobambam2 Version: 2.0.185+ds-2 Source Version: 2.0.185+ds-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-4ff89250-c1e2-4850-a19d-7d23ce35f460' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-MLvOnX/resolver-BxNxoM' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-04-28-0805.24-F-2024-04-28-0253.52.pdiff [25.7 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-04-28-0805.24-F-2024-04-28-0253.52.pdiff [254 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-04-28-0805.24-F-2024-04-28-0253.52.pdiff [25.7 kB] Get:6 http://localhost:3142/debian sid/main mips64el Packages [9489 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-04-28-0805.24-F-2024-04-28-0253.52.pdiff [254 kB] Fetched 10.1 MB in 3s (3684 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libperl5.38t64 perl perl-base perl-modules-5.38 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 9068 kB of archives. After this operation, 3072 B disk space will be freed. Get:1 http://localhost:3142/debian sid/main amd64 libperl5.38t64 amd64 5.38.2-4 [4281 kB] Get:2 http://localhost:3142/debian sid/main amd64 perl amd64 5.38.2-4 [236 kB] Get:3 http://localhost:3142/debian sid/main amd64 perl-base amd64 5.38.2-4 [1643 kB] Get:4 http://localhost:3142/debian sid/main amd64 perl-modules-5.38 all 5.38.2-4 [2907 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9068 kB in 0s (176 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12854 files and directories currently installed.) Preparing to unpack .../libperl5.38t64_5.38.2-4_amd64.deb ... Unpacking libperl5.38t64:amd64 (5.38.2-4) over (5.38.2-3.2+b2) ... Preparing to unpack .../perl_5.38.2-4_amd64.deb ... Unpacking perl (5.38.2-4) over (5.38.2-3.2+b2) ... Preparing to unpack .../perl-base_5.38.2-4_amd64.deb ... Unpacking perl-base (5.38.2-4) over (5.38.2-3.2+b2) ... Setting up perl-base (5.38.2-4) ... (Reading database ... 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Processing triggers for libc-bin (2.37-18) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'biobambam2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biobambam2.git Please use: git clone https://salsa.debian.org/med-team/biobambam2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1284 kB of source archives. Get:1 http://localhost:3142/debian sid/main biobambam2 2.0.185+ds-2 (dsc) [2254 B] Get:2 http://localhost:3142/debian sid/main biobambam2 2.0.185+ds-2 (tar) [249 kB] Get:3 http://localhost:3142/debian sid/main biobambam2 2.0.185+ds-2 (diff) [1032 kB] Fetched 1284 kB in 0s (89.2 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/biobambam2-MLvOnX/biobambam2-2.0.185+ds' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-MLvOnX' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkgconf, libmaus2-dev (>= 2.0.800), libxerces-c-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), pkgconf, libmaus2-dev (>= 2.0.800), libxerces-c-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [776 B] Get:5 copy:/<>/apt_archive ./ Packages [822 B] Fetched 2207 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cpp-12-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dpkg-cross dwz fakeroot file g++-12-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-12-cross-base-mipsen gcc-12-mips64el-linux-gnuabi64 gcc-12-mips64el-linux-gnuabi64-base gcc-13-base:mips64el gcc-13-cross-base-mipsen gcc-14-base:mips64el gcc-mips64el-linux-gnuabi64 gettext gettext-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm groff-base icu-devtools intltool-debian libarchive-zip-perl libassuan0 libassuan0:mips64el libatomic1:mips64el libatomic1-mips64el-cross libbrotli1:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl3t64-gnutls:mips64el libdb5.3t64:mips64el libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev-mips64el-cross libgcc-13-dev:mips64el libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp10:mips64el libgnutls30t64:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgpg-error0:mips64el libgpgme11t64:mips64el libgssapi-krb5-2:mips64el libhogweed6t64:mips64el libicu-dev:mips64el libicu72 libicu72:mips64el libidn2-0:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libksba8 libldap-2.5-0 libldap-2.5-0:mips64el liblocale-gettext-perl libmagic-mgc libmagic1t64 libmaus2-2:mips64el libmaus2-dev:mips64el libncursesw6 libnettle8t64:mips64el libnghttp2-14:mips64el libnpth0t64 libp11-kit0:mips64el libpipeline1 libpkgconf3 libpsl5t64:mips64el libreadline8t64 librtmp1:mips64el libsasl2-2 libsasl2-2:mips64el libsasl2-modules-db libsasl2-modules-db:mips64el libsqlite3-0 libssh2-1t64:mips64el libssl3t64:mips64el libstdc++-12-dev-mips64el-cross libstdc++-13-dev:mips64el libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtasn1-6:mips64el libtool libuchardet0 libunistring5:mips64el libxerces-c-dev:mips64el libxerces-c3.2t64:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mips64el m4 man-db pinentry-curses pkgconf:mips64el pkgconf-bin po-debconf readline-common sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make dbus-user-session libpam-systemd pinentry-gnome3 tor binutils-multiarch g++-12-multilib-mips64el-linux-gnuabi64 gcc-12-doc gcc-12-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev parcimonie xloadimage scdaemon groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el libnss-nis:mips64el libnss-nisplus:mips64el manpages-dev:mips64el gnutls-bin:mips64el krb5-doc:mips64el krb5-user:mips64el icu-doc:mips64el secrecy:mips64el libstdc++-13-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libxerces-c-doc:mips64el libyaml-shell-perl m4-doc apparmor less www-browser pinentry-doc libmail-box-perl readline-doc Recommended packages: curl | wget | lynx ca-certificates:mips64el libarchive-cpio-perl libgpg-error-l10n:mips64el krb5-locales:mips64el libldap-common libldap-common:mips64el libgpm2 publicsuffix:mips64el libsasl2-modules libsasl2-modules:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cpp-12-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dpkg-cross dwz fakeroot file g++-12-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-12-cross-base-mipsen gcc-12-mips64el-linux-gnuabi64 gcc-12-mips64el-linux-gnuabi64-base gcc-13-base:mips64el gcc-13-cross-base-mipsen gcc-14-base:mips64el gcc-mips64el-linux-gnuabi64 gettext gettext-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm groff-base icu-devtools intltool-debian libarchive-zip-perl libassuan0 libassuan0:mips64el libatomic1:mips64el libatomic1-mips64el-cross libbrotli1:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl3t64-gnutls:mips64el libdb5.3t64:mips64el libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev-mips64el-cross libgcc-13-dev:mips64el libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp10:mips64el libgnutls30t64:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgpg-error0:mips64el libgpgme11t64:mips64el libgssapi-krb5-2:mips64el libhogweed6t64:mips64el libicu-dev:mips64el libicu72 libicu72:mips64el libidn2-0:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libksba8 libldap-2.5-0 libldap-2.5-0:mips64el liblocale-gettext-perl libmagic-mgc libmagic1t64 libmaus2-2:mips64el libmaus2-dev:mips64el libncursesw6 libnettle8t64:mips64el libnghttp2-14:mips64el libnpth0t64 libp11-kit0:mips64el libpipeline1 libpkgconf3 libpsl5t64:mips64el libreadline8t64 librtmp1:mips64el libsasl2-2 libsasl2-2:mips64el libsasl2-modules-db libsasl2-modules-db:mips64el libsqlite3-0 libssh2-1t64:mips64el libssl3t64:mips64el libstdc++-12-dev-mips64el-cross libstdc++-13-dev:mips64el libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtasn1-6:mips64el libtool libuchardet0 libunistring5:mips64el libxerces-c-dev:mips64el libxerces-c3.2t64:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mips64el m4 man-db pinentry-curses pkgconf:mips64el pkgconf-bin po-debconf readline-common sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 143 newly installed, 0 to remove and 0 not upgraded. Need to get 118 MB of archives. After this operation, 562 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [956 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:4 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:6 http://localhost:3142/debian sid/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:7 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:9 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:10 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get:11 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get:12 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:13 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get:14 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:15 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:16 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:17 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:18 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:19 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:20 http://localhost:3142/debian sid/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.41.90.20240115-1cross5 [2777 kB] Get:21 http://localhost:3142/debian sid/main amd64 gcc-12-mips64el-linux-gnuabi64-base amd64 12.3.0-6cross3 [40.1 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-12-mips64el-linux-gnuabi64 amd64 12.3.0-6cross3 [8107 kB] Get:23 http://localhost:3142/debian sid/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [3296 B] Get:24 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:25 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base-mipsen all 12.3.0-6cross3 [35.5 kB] Get:26 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base-mipsen all 13.2.0-10cross1 [37.8 kB] Get:27 http://localhost:3142/debian sid/main amd64 libc6-mips64el-cross all 2.37-13cross1 [1055 kB] Get:28 http://localhost:3142/debian sid/main amd64 libgcc-s1-mips64el-cross all 13.2.0-10cross1 [75.4 kB] Get:29 http://localhost:3142/debian sid/main amd64 libgomp1-mips64el-cross all 13.2.0-10cross1 [111 kB] Get:30 http://localhost:3142/debian sid/main amd64 libatomic1-mips64el-cross all 13.2.0-10cross1 [7120 B] Get:31 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-mips64el-cross all 12.3.0-6cross3 [294 kB] Get:32 http://localhost:3142/debian sid/main amd64 gcc-12-mips64el-linux-gnuabi64 amd64 12.3.0-6cross3 [16.0 MB] Get:33 http://localhost:3142/debian sid/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [1480 B] Get:34 http://localhost:3142/debian sid/main amd64 libstdc++6-mips64el-cross all 13.2.0-10cross1 [568 kB] Get:35 http://localhost:3142/debian sid/main amd64 libc6-dev-mips64el-cross all 2.37-13cross1 [1574 kB] Get:36 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-mips64el-cross all 12.3.0-6cross3 [2082 kB] Get:37 http://localhost:3142/debian sid/main amd64 g++-12-mips64el-linux-gnuabi64 amd64 12.3.0-6cross3 [9041 kB] Get:38 http://localhost:3142/debian sid/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [1188 B] Get:39 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:40 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:41 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:42 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get:43 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b3 [313 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:48 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:49 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:50 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:51 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:52 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:53 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:54 http://localhost:3142/debian sid/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:55 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:56 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:57 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:58 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:59 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:60 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:61 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:62 http://localhost:3142/debian sid/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:63 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:64 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:65 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:66 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:67 http://localhost:3142/debian sid/main amd64 debhelper all 13.15.3 [901 kB] Get:68 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.6-1+b1 [50.4 kB] Get:69 http://localhost:3142/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:70 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-3 [565 kB] Get:71 http://localhost:3142/debian sid/main amd64 libksba8 amd64 1.6.6-1 [131 kB] Get:72 http://localhost:3142/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get:73 http://localhost:3142/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get:74 http://localhost:3142/debian sid/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get:75 http://localhost:3142/debian sid/main amd64 libnpth0t64 amd64 1.6-3.1 [17.9 kB] Get:76 http://localhost:3142/debian sid/main amd64 dirmngr amd64 2.2.40-3 [793 kB] Get:77 http://localhost:3142/debian sid/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:78 http://localhost:3142/debian sid/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:79 http://localhost:3142/debian sid/main mips64el gcc-13-base mips64el 13.2.0-23 [44.6 kB] Get:80 http://localhost:3142/debian sid/main mips64el gcc-14-base mips64el 14-20240330-1 [43.2 kB] Get:81 http://localhost:3142/debian sid/main amd64 gnupg-l10n all 2.2.40-3 [1094 kB] Get:82 http://localhost:3142/debian sid/main amd64 gnupg-utils amd64 2.2.40-3 [928 kB] Get:83 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.45.3-1 [896 kB] Get:84 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-3 [950 kB] Get:85 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4+20240414-1 [135 kB] Get:86 http://localhost:3142/debian sid/main amd64 pinentry-curses amd64 1.2.1-3+b2 [78.3 kB] Get:87 http://localhost:3142/debian sid/main amd64 gpg-agent amd64 2.2.40-3 [695 kB] Get:88 http://localhost:3142/debian sid/main amd64 gpg-wks-client amd64 2.2.40-3 [541 kB] Get:89 http://localhost:3142/debian sid/main amd64 gpg-wks-server amd64 2.2.40-3 [532 kB] Get:90 http://localhost:3142/debian sid/main amd64 gpgsm amd64 2.2.40-3 [671 kB] Get:91 http://localhost:3142/debian sid/main amd64 gnupg all 2.2.40-3 [847 kB] Get:92 http://localhost:3142/debian sid/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get:93 http://localhost:3142/debian sid/main mips64el libgcc-s1 mips64el 14-20240330-1 [78.2 kB] Get:94 http://localhost:3142/debian sid/main mips64el libc6 mips64el 2.37-18 [2373 kB] Get:95 http://localhost:3142/debian sid/main mips64el libgpg-error0 mips64el 1.47-3+b1 [73.8 kB] Get:96 http://localhost:3142/debian sid/main mips64el libassuan0 mips64el 2.5.6-1+b1 [46.7 kB] Get:97 http://localhost:3142/debian sid/main mips64el libatomic1 mips64el 14-20240330-1 [7300 B] Get:98 http://localhost:3142/debian sid/main mips64el libbrotli1 mips64el 1.1.0-2+b3 [325 kB] Get:99 http://localhost:3142/debian sid/main mips64el libcrypt1 mips64el 1:4.4.36-4 [94.1 kB] Get:100 http://localhost:3142/debian sid/main mips64el libcrypt-dev mips64el 1:4.4.36-4 [127 kB] Get:101 http://localhost:3142/debian sid/main mips64el libc6-dev mips64el 2.37-18 [1581 kB] Get:102 http://localhost:3142/debian sid/main mips64el libcom-err2 mips64el 1.47.0-2.4 [20.1 kB] Get:103 http://localhost:3142/debian sid/main mips64el libgmp10 mips64el 2:6.3.0+dfsg-2+b1 [546 kB] Get:104 http://localhost:3142/debian sid/main mips64el libnettle8t64 mips64el 3.9.1-2.2 [301 kB] Get:105 http://localhost:3142/debian sid/main mips64el libhogweed6t64 mips64el 3.9.1-2.2 [318 kB] Get:106 http://localhost:3142/debian sid/main mips64el libunistring5 mips64el 1.2-1 [398 kB] Get:107 http://localhost:3142/debian sid/main mips64el libidn2-0 mips64el 2.3.7-2 [126 kB] Get:108 http://localhost:3142/debian sid/main mips64el libffi8 mips64el 3.4.6-1 [23.5 kB] Get:109 http://localhost:3142/debian sid/main mips64el libp11-kit0 mips64el 0.25.3-4 [338 kB] Get:110 http://localhost:3142/debian sid/main mips64el libtasn1-6 mips64el 4.19.0-3+b2 [46.0 kB] Get:111 http://localhost:3142/debian sid/main mips64el libgnutls30t64 mips64el 3.8.5-2 [1258 kB] Get:112 http://localhost:3142/debian sid/main mips64el libkrb5support0 mips64el 1.20.1-6+b1 [31.2 kB] Get:113 http://localhost:3142/debian sid/main mips64el libk5crypto3 mips64el 1.20.1-6+b1 [86.0 kB] Get:114 http://localhost:3142/debian sid/main mips64el libkeyutils1 mips64el 1.6.3-3 [8500 B] Get:115 http://localhost:3142/debian sid/main mips64el libzstd1 mips64el 1.5.5+dfsg2-2 [286 kB] Get:116 http://localhost:3142/debian sid/main mips64el zlib1g mips64el 1:1.3.dfsg-3.1 [78.8 kB] Get:117 http://localhost:3142/debian sid/main mips64el libssl3t64 mips64el 3.2.1-3 [1647 kB] Get:118 http://localhost:3142/debian sid/main mips64el libkrb5-3 mips64el 1.20.1-6+b1 [297 kB] Get:119 http://localhost:3142/debian sid/main mips64el libgssapi-krb5-2 mips64el 1.20.1-6+b1 [118 kB] Get:120 http://localhost:3142/debian sid/main mips64el libdb5.3t64 mips64el 5.3.28+dfsg2-7 [602 kB] Get:121 http://localhost:3142/debian sid/main mips64el libsasl2-modules-db mips64el 2.1.28+dfsg1-6 [18.8 kB] Get:122 http://localhost:3142/debian sid/main mips64el libsasl2-2 mips64el 2.1.28+dfsg1-6 [52.2 kB] Get:123 http://localhost:3142/debian sid/main mips64el libldap-2.5-0 mips64el 2.5.17+dfsg-1 [161 kB] Get:124 http://localhost:3142/debian sid/main mips64el libnghttp2-14 mips64el 1.61.0-1+b1 [69.6 kB] Get:125 http://localhost:3142/debian sid/main mips64el libpsl5t64 mips64el 0.21.2-1.1 [56.6 kB] Get:126 http://localhost:3142/debian sid/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2+b4 [53.5 kB] Get:127 http://localhost:3142/debian sid/main mips64el libssh2-1t64 mips64el 1.11.0-4.1+b2 [204 kB] Get:128 http://localhost:3142/debian sid/main mips64el libcurl3t64-gnutls mips64el 8.7.1-4 [395 kB] Get:129 http://localhost:3142/debian sid/main mips64el libgomp1 mips64el 14-20240330-1 [113 kB] Get:130 http://localhost:3142/debian sid/main mips64el libgcc-13-dev mips64el 13.2.0-23 [319 kB] Get:131 http://localhost:3142/debian sid/main mips64el libgpgme11t64 mips64el 1.18.0-4.1+b1 [278 kB] Get:132 http://localhost:3142/debian sid/main mips64el libstdc++6 mips64el 14-20240330-1 [629 kB] Get:133 http://localhost:3142/debian sid/main mips64el libicu72 mips64el 72.1-4+b1 [9234 kB] Get:134 http://localhost:3142/debian sid/main mips64el libicu-dev mips64el 72.1-4+b1 [10.6 MB] Get:135 http://localhost:3142/debian sid/main mips64el libmaus2-2 mips64el 2.0.813+ds-2 [1336 kB] Get:136 http://localhost:3142/debian sid/main mips64el zlib1g-dev mips64el 1:1.3.dfsg-3.1 [912 kB] Get:137 http://localhost:3142/debian sid/main mips64el libmaus2-dev mips64el 2.0.813+ds-2 [5826 kB] Get:138 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get:139 http://localhost:3142/debian sid/main mips64el libstdc++-13-dev mips64el 13.2.0-23 [2311 kB] Get:140 http://localhost:3142/debian sid/main mips64el libxerces-c3.2t64 mips64el 3.2.4+debian-1.3 [751 kB] Get:141 http://localhost:3142/debian sid/main mips64el libxerces-c-dev mips64el 3.2.4+debian-1.3 [1771 kB] Get:142 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get:143 http://localhost:3142/debian sid/main mips64el pkgconf mips64el 1.8.1-1+b2 [26.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 118 MB in 1s (81.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12851 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../004-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../007-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../008-groff-base_1.23.0-3+b1_amd64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../009-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../010-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package ucf. Preparing to unpack .../012-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package binutils-mips64el-linux-gnuabi64. Preparing to unpack .../018-binutils-mips64el-linux-gnuabi64_2.41.90.20240115-1cross5_amd64.deb ... Unpacking binutils-mips64el-linux-gnuabi64 (2.41.90.20240115-1cross5) ... Selecting previously unselected package gcc-12-mips64el-linux-gnuabi64-base:amd64. Preparing to unpack .../019-gcc-12-mips64el-linux-gnuabi64-base_12.3.0-6cross3_amd64.deb ... Unpacking gcc-12-mips64el-linux-gnuabi64-base:amd64 (12.3.0-6cross3) ... Selecting previously unselected package cpp-12-mips64el-linux-gnuabi64. Preparing to unpack .../020-cpp-12-mips64el-linux-gnuabi64_12.3.0-6cross3_amd64.deb ... Unpacking cpp-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Selecting previously unselected package cpp-mips64el-linux-gnuabi64. Preparing to unpack .../021-cpp-mips64el-linux-gnuabi64_4%3a12.2.0-4_amd64.deb ... Unpacking cpp-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Selecting previously unselected package cross-config. Preparing to unpack .../022-cross-config_2.6.20_all.deb ... Unpacking cross-config (2.6.20) ... Selecting previously unselected package gcc-12-cross-base-mipsen. Preparing to unpack .../023-gcc-12-cross-base-mipsen_12.3.0-6cross3_all.deb ... Unpacking gcc-12-cross-base-mipsen (12.3.0-6cross3) ... Selecting previously unselected package gcc-13-cross-base-mipsen. Preparing to unpack .../024-gcc-13-cross-base-mipsen_13.2.0-10cross1_all.deb ... Unpacking gcc-13-cross-base-mipsen (13.2.0-10cross1) ... Selecting previously unselected package libc6-mips64el-cross. Preparing to unpack .../025-libc6-mips64el-cross_2.37-13cross1_all.deb ... Unpacking libc6-mips64el-cross (2.37-13cross1) ... Selecting previously unselected package libgcc-s1-mips64el-cross. Preparing to unpack .../026-libgcc-s1-mips64el-cross_13.2.0-10cross1_all.deb ... Unpacking libgcc-s1-mips64el-cross (13.2.0-10cross1) ... Selecting previously unselected package libgomp1-mips64el-cross. Preparing to unpack .../027-libgomp1-mips64el-cross_13.2.0-10cross1_all.deb ... Unpacking libgomp1-mips64el-cross (13.2.0-10cross1) ... Selecting previously unselected package libatomic1-mips64el-cross. Preparing to unpack .../028-libatomic1-mips64el-cross_13.2.0-10cross1_all.deb ... Unpacking libatomic1-mips64el-cross (13.2.0-10cross1) ... Selecting previously unselected package libgcc-12-dev-mips64el-cross. Preparing to unpack .../029-libgcc-12-dev-mips64el-cross_12.3.0-6cross3_all.deb ... Unpacking libgcc-12-dev-mips64el-cross (12.3.0-6cross3) ... Selecting previously unselected package gcc-12-mips64el-linux-gnuabi64. Preparing to unpack .../030-gcc-12-mips64el-linux-gnuabi64_12.3.0-6cross3_amd64.deb ... Unpacking gcc-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Selecting previously unselected package gcc-mips64el-linux-gnuabi64. Preparing to unpack .../031-gcc-mips64el-linux-gnuabi64_4%3a12.2.0-4_amd64.deb ... Unpacking gcc-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Selecting previously unselected package libstdc++6-mips64el-cross. 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Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../037-libconfig-inifiles-perl_3.000003-2_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-2) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../038-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../039-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../040-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../041-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. 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Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../054-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../055-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../056-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../057-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../058-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. 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Setting up libsqlite3-0:amd64 (3.45.3-1) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gcc-12-cross-base-mipsen (12.3.0-6cross3) ... Setting up libc6-mips64el-cross (2.37-13cross1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libassuan0:amd64 (2.5.6-1+b1) ... Setting up libyaml-perl (1.31-1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.41.90.20240115-1cross5) ... Setting up libfakeroot:amd64 (1.34-1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libpkgconf3:amd64 (1.8.1-1+b2) ... Setting up gcc-13-base:mips64el (13.2.0-23) ... Setting up gcc-13-cross-base-mipsen (13.2.0-10cross1) ... Setting up gnupg-l10n (2.2.40-3) ... Setting up libc6-dev-mips64el-cross (2.37-13cross1) ... Setting up autopoint (0.21-14) ... Setting up icu-devtools (72.1-4+b1) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up libncursesw6:amd64 (6.4+20240414-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up gcc-12-mips64el-linux-gnuabi64-base:amd64 (12.3.0-6cross3) ... Setting up cpp-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up cpp-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up libgomp1-mips64el-cross (13.2.0-10cross1) ... Setting up libgcc-s1-mips64el-cross (13.2.0-10cross1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-3+b2) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libatomic1-mips64el-cross (13.2.0-10cross1) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up pkgconf:mips64el (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ucf (3.0043+nmu1) ... Setting up libstdc++6-mips64el-cross (13.2.0-10cross1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up gpgconf (2.2.40-3) ... Setting up gpg (2.2.40-3) ... Setting up gnupg-utils (2.2.40-3) ... Setting up libgcc-12-dev-mips64el-cross (12.3.0-6cross3) ... Setting up gpg-agent (2.2.40-3) ... Setting up gcc-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Setting up libstdc++-12-dev-mips64el-cross (12.3.0-6cross3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up gpgsm (2.2.40-3) ... Setting up g++-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dirmngr (2.2.40-3) ... Setting up gcc-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gpg-wks-server (2.2.40-3) ... Setting up g++-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up gpg-wks-client (2.2.40-3) ... Setting up debhelper (13.15.3) ... Setting up libxml-simple-perl (2.25-2) ... Setting up gnupg (2.2.40-3) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libgcc-s1:mips64el (14-20240330-1) ... Setting up libc6:mips64el (2.37-18) ... Setting up libdb5.3t64:mips64el (5.3.28+dfsg2-7) ... Setting up libffi8:mips64el (3.4.6-1) ... Setting up libtasn1-6:mips64el (4.19.0-3+b2) ... Setting up libstdc++6:mips64el (14-20240330-1) ... Setting up libzstd1:mips64el (1.5.5+dfsg2-2) ... Setting up libkeyutils1:mips64el (1.6.3-3) ... Setting up libicu72:mips64el (72.1-4+b1) ... Setting up libgpg-error0:mips64el (1.47-3+b1) ... Setting up libbrotli1:mips64el (1.1.0-2+b3) ... Setting up libnghttp2-14:mips64el (1.61.0-1+b1) ... Setting up zlib1g:mips64el (1:1.3.dfsg-3.1) ... Setting up libcrypt1:mips64el (1:4.4.36-4) ... Setting up libcom-err2:mips64el (1.47.0-2.4) ... Setting up libassuan0:mips64el (2.5.6-1+b1) ... Setting up libgomp1:mips64el (14-20240330-1) ... Setting up libkrb5support0:mips64el (1.20.1-6+b1) ... Setting up libsasl2-modules-db:mips64el (2.1.28+dfsg1-6) ... Setting up libnettle8t64:mips64el (3.9.1-2.2) ... Setting up libgmp10:mips64el (2:6.3.0+dfsg-2+b1) ... Setting up libp11-kit0:mips64el (0.25.3-4) ... Setting up libunistring5:mips64el (1.2-1) ... Setting up libatomic1:mips64el (14-20240330-1) ... Setting up libk5crypto3:mips64el (1.20.1-6+b1) ... Setting up libhogweed6t64:mips64el (3.9.1-2.2) ... Setting up libgcc-13-dev:mips64el (13.2.0-23) ... Setting up libcrypt-dev:mips64el (1:4.4.36-4) ... Setting up libc6-dev:mips64el (2.37-18) ... Setting up libgpgme11t64:mips64el (1.18.0-4.1+b1) ... Setting up libicu-dev:mips64el (72.1-4+b1) ... Setting up libstdc++-13-dev:mips64el (13.2.0-23) ... Setting up libssl3t64:mips64el (3.2.1-3) ... Setting up libmaus2-2:mips64el (2.0.813+ds-2) ... Setting up libidn2-0:mips64el (2.3.7-2) ... Setting up libsasl2-2:mips64el (2.1.28+dfsg1-6) ... Setting up zlib1g-dev:mips64el (1:1.3.dfsg-3.1) ... Setting up libkrb5-3:mips64el (1.20.1-6+b1) ... Setting up libssh2-1t64:mips64el (1.11.0-4.1+b2) ... Setting up libmaus2-dev:mips64el (2.0.813+ds-2) ... Setting up libgnutls30t64:mips64el (3.8.5-2) ... Setting up libpsl5t64:mips64el (0.21.2-1.1) ... Setting up libldap-2.5-0:mips64el (2.5.17+dfsg-1) ... Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libgssapi-krb5-2:mips64el (1.20.1-6+b1) ... Setting up libcurl3t64-gnutls:mips64el (8.7.1-4) ... Setting up libxerces-c3.2t64:mips64el (3.2.4+debian-1.3) ... Setting up libxerces-c-dev:mips64el (3.2.4+debian-1.3) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.37-18) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-23 gcc-13_13.2.0-23 libc6-dev_2.37-18 libstdc++-12-dev-mips64el-cross_12.3.0-6cross3 libstdc++-13-dev_13.2.0-23 libstdc++6_14-20240330-1 libstdc++6-mips64el-cross_13.2.0-10cross1 linux-libc-dev_6.7.12-1 Package versions: adduser_3.137 apt_2.9.2 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-4 binutils-common_2.42-4 binutils-mips64el-linux-gnuabi64_2.41.90.20240115-1cross5 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.40-8 bsdutils_1:2.40-8 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-12-mips64el-linux-gnuabi64_12.3.0-6cross3 cpp-13_13.2.0-23 cpp-13-x86-64-linux-gnu_13.2.0-23 cpp-mips64el-linux-gnuabi64_4:12.2.0-4 cpp-x86-64-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-mips64el_12.9 dash_0.5.12-6 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-3 dpkg_1.22.6 dpkg-cross_2.6.20 dpkg-dev_1.22.6 dwz_0.15-1+b1 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-5 g++_4:13.2.0-7 g++-12-mips64el-linux-gnuabi64_12.3.0-6cross3 g++-13_13.2.0-23 g++-13-x86-64-linux-gnu_13.2.0-23 g++-mips64el-linux-gnuabi64_4:12.2.0-4 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-12-cross-base-mipsen_12.3.0-6cross3 gcc-12-mips64el-linux-gnuabi64_12.3.0-6cross3 gcc-12-mips64el-linux-gnuabi64-base_12.3.0-6cross3 gcc-13_13.2.0-23 gcc-13-base_13.2.0-23 gcc-13-cross-base-mipsen_13.2.0-10cross1 gcc-13-x86-64-linux-gnu_13.2.0-23 gcc-14-base_14-20240330-1 gcc-mips64el-linux-gnuabi64_4:12.2.0-4 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gnupg_2.2.40-3 gnupg-l10n_2.2.40-3 gnupg-utils_2.2.40-3 gpg_2.2.40-3 gpg-agent_2.2.40-3 gpg-wks-client_2.2.40-3 gpg-wks-server_2.2.40-3 gpgconf_2.2.40-3 gpgsm_2.2.40-3 gpgv_2.2.40-3 grep_3.11-4 groff-base_1.23.0-3+b1 gzip_1.12-1.1 hostname_3.23+nmu2 icu-devtools_72.1-4+b1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libapt-pkg6.0t64_2.9.2 libarchive-zip-perl_1.68-1 libasan8_14-20240330-1 libassuan0_2.5.6-1+b1 libatomic1_14-20240330-1 libatomic1-mips64el-cross_13.2.0-10cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libblkid1_2.40-8 libbrotli1_1.1.0-2+b3 libbz2-1.0_1.0.8-5.1 libc-bin_2.37-18 libc-dev-bin_2.37-18 libc6_2.37-18 libc6-dev_2.37-18 libc6-dev-mips64el-cross_2.37-13cross1 libc6-mips64el-cross_2.37-13cross1 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcc1-0_14-20240330-1 libcom-err2_1.47.0-2.4 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libcurl3t64-gnutls_8.7.1-4 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.271+b3 libdebhelper-perl_13.15.3 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.6 libelf1t64_0.191-1+b1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-12-dev-mips64el-cross_12.3.0-6cross3 libgcc-13-dev_13.2.0-23 libgcc-s1_14-20240330-1 libgcc-s1-mips64el-cross_13.2.0-10cross1 libgcrypt20_1.10.3-2+b1 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-2 libgomp1_14-20240330-1 libgomp1-mips64el-cross_13.2.0-10cross1 libgpg-error0_1.47-3+b1 libgpgme11t64_1.18.0-4.1+b1 libgprofng0_2.42-4 libgssapi-krb5-2_1.20.1-6+b1 libhogweed6t64_3.9.1-2.2 libhwasan0_14-20240330-1 libicu-dev_72.1-4+b1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14-20240330-1 libjansson4_2.14-2+b2 libk5crypto3_1.20.1-6+b1 libkeyutils1_1.6.3-3 libkrb5-3_1.20.1-6+b1 libkrb5support0_1.20.1-6+b1 libksba8_1.6.6-1 libldap-2.5-0_2.5.17+dfsg-1 liblocale-gettext-perl_1.07-7 liblsan0_14-20240330-1 liblz4-1_1.9.4-2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmaus2-2_2.0.813+ds-2 libmaus2-dev_2.0.813+ds-2 libmd0_1.1.0-2 libmount1_2.40-8 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.4+20240414-1 libnettle8t64_3.9.1-2.2 libnghttp2-14_1.61.0-1+b1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.3-4 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-4 libpipeline1_1.5.7-2 libpkgconf3_1.8.1-1+b2 libpsl5t64_0.21.2-1.1 libquadmath0_14-20240330-1 libreadline8t64_8.2-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2+b1 libsframe1_2.42-4 libsmartcols1_2.40-8 libsqlite3-0_3.45.3-1 libssh2-1t64_1.11.0-4.1+b2 libssl3t64_3.2.1-3 libstdc++-12-dev-mips64el-cross_12.3.0-6cross3 libstdc++-13-dev_13.2.0-23 libstdc++6_14-20240330-1 libstdc++6-mips64el-cross_13.2.0-10cross1 libsub-override-perl_0.10-1 libsystemd0_255.5-1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.4+20240414-1 libtool_2.4.7-7 libtsan2_14-20240330-1 libubsan1_14-20240330-1 libuchardet0_0.0.8-1+b1 libudev1_255.5-1 libunistring5_1.2-1 libuuid1_2.40-8 libxerces-c-dev_3.2.4+debian-1.3 libxerces-c3.2t64_3.2.4+debian-1.3 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b3 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b3 libxxhash0_0.8.2-2+b1 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.7.12-1 login_1:4.13+dfsg1-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 mount_2.40-8 ncurses-base_6.4+20240414-1 ncurses-bin_6.4+20240414-1 passwd_1:4.13+dfsg1-4 patch_2.7.6-7 perl_5.38.2-4 perl-base_5.38.2-4 perl-modules-5.38_5.38.2-4 pinentry-curses_1.2.1-3+b2 pkgconf_1.8.1-1+b2 pkgconf-bin_1.8.1-1+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.09-1 tar_1.35+dfsg-3 tzdata_2024a-3 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.40-8 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1 zlib1g-dev_1:1.3.dfsg-3.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biobambam2 Binary: biobambam2 Architecture: any Version: 2.0.185+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://gitlab.com/german.tischler/biobambam2 Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/biobambam2 Vcs-Git: https://salsa.debian.org/med-team/biobambam2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), pkgconf, libmaus2-dev (>= 2.0.800), libxerces-c-dev Package-List: biobambam2 deb science optional arch=any Checksums-Sha1: 2776b598958c159faa1147765a37a9be788c8725 249000 biobambam2_2.0.185+ds.orig.tar.xz a6d8b9f5865c14806d595f2ac8cd188e3f9edcd2 1032436 biobambam2_2.0.185+ds-2.debian.tar.xz Checksums-Sha256: 90cc8328f4e78771cf87cc918d890d12073cbbfbcad7cf94e35b655e3ec2747a 249000 biobambam2_2.0.185+ds.orig.tar.xz 5010ff92699f48db055e33a6ddda005ed339388cc1995503e985325e4d53652c 1032436 biobambam2_2.0.185+ds-2.debian.tar.xz Files: d0c485318daa583137b98d18fd0add77 249000 biobambam2_2.0.185+ds.orig.tar.xz bc64f60dd4ccfa2477438dcd2db1131e 1032436 biobambam2_2.0.185+ds-2.debian.tar.xz Dgit: 8e56855700614f8a0ddddf4fd2cb5611e10015e4 debian archive/debian/2.0.185+ds-2 https://git.dgit.debian.org/biobambam2 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmYikWMUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrX1A//dGe1VAwa3juRlsGgmA9kRTYR+J89 x2/kBqtpIS8cO7onEyZ2MDixN7hFFq9QHCh0w7q1vBpdMMmPXJ5doQIQuTVcvWia Ugv0eGCk7v6Mja6dwECg9/JZ9IKn4BDQ0Mxectx/vWqEaa1BDhX4OLA6TfiluenO bYa0mcj4zm4jtlw1MbFYLOmf3d4fkSrDCtAqacc/DfchuesLVBkBaxb6oX/RuPzP T41aTROw4wxydmqd/04LSEXvJ55mZqzjihN+o12VpSsfdjsjQn/1WV9O7MmLbzdz VVDzXzOCrEzT0Um7E91gJ6E1D0RcUDlSCm2HXNcmUA2xc/ZawEQ8cOQMGkUao7NR DjeF38kGLokp/Djwd0LcoJDlIAfssb+T+B/gDndJINQpHzYsggCAlHfqjpJRRwpz CgvdGt2rrIi3ktmRoraoWmqN6XvCyjQFr3XxmLlw4T6p9Mk/5+Oj3IF+suMtm7EZ 1vLUbLoGwrT/zS+3Fdiu5+31uJv3Nm816IkefAEv/FhRqzrXW20IguFdmLFeQFI8 uP3+CcgbQfcs9REtB2MAJ50GQLi84ch3vXjxdizQAiZXgxhMNXXhn6BLNcgsYmVO 9v9u6mbo10JW+0kXVHsrg0f4I+OwdcrT/xuZKrsDM/VPgFdV6g+GQJE0Dkgbb6i2 py7JtzKEuhkACi0= =ZDUq -----END PGP SIGNATURE----- gpgv: Signature made Fri Apr 19 15:44:35 2024 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./biobambam2_2.0.185+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting biobambam2 in /<> dpkg-source: info: unpacking biobambam2_2.0.185+ds.orig.tar.xz dpkg-source: info: unpacking biobambam2_2.0.185+ds-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.RjiXPDfhdR/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-4ff89250-c1e2-4850-a19d-7d23ce35f460 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package biobambam2 dpkg-buildpackage: info: source version 2.0.185+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f config.log make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:2: warning: The macro `AC_CANONICAL_SYSTEM' is obsolete. configure.ac:2: You should run autoupdate. ./lib/autoconf/general.m4:2081: AC_CANONICAL_SYSTEM is expanded from... configure.ac:2: the top level configure.ac:3: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:3: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:3: the top level configure.ac:6: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:6: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:1089: AM_CONFIG_HEADER is expanded from... configure.ac:6: the top level configure.ac:9: warning: The macro `AC_CANONICAL_SYSTEM' is obsolete. configure.ac:9: You should run autoupdate. ./lib/autoconf/general.m4:2081: AC_CANONICAL_SYSTEM is expanded from... configure.ac:9: the top level configure.ac:68: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:68: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:68: the top level configure.ac:147: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:147: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:147: the top level configure.ac:464: warning: AC_OUTPUT should be used without arguments. configure.ac:464: You should run autoupdate. configure.ac:3: installing './compile' configure.ac:2: installing './config.guess' configure.ac:2: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 configure: loading site script /etc/dpkg-cross/cross-config.mips64el checking build system type... x86_64-pc-linux-gnu checking host system type... mips64el-unknown-linux-gnuabi64 checking target system type... mips64el-unknown-linux-gnuabi64 checking how to print strings... printf checking for mips64el-linux-gnuabi64-gcc... mips64el-linux-gnuabi64-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... yes checking for mips64el-linux-gnuabi64-gcc option to enable C11 features... none needed checking whether mips64el-linux-gnuabi64-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by mips64el-linux-gnuabi64-gcc... /usr/mips64el-linux-gnuabi64/bin/ld checking if the linker (/usr/mips64el-linux-gnuabi64/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/mips64el-linux-gnuabi64-nm -B checking the name lister (/usr/bin/mips64el-linux-gnuabi64-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to mips64el-unknown-linux-gnuabi64 format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/mips64el-linux-gnuabi64/bin/ld option to reload object files... -r checking for mips64el-linux-gnuabi64-file... no checking for file... file configure: WARNING: using cross tools not prefixed with host triplet checking for mips64el-linux-gnuabi64-objdump... mips64el-linux-gnuabi64-objdump checking how to recognize dependent libraries... pass_all checking for mips64el-linux-gnuabi64-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for mips64el-linux-gnuabi64-ar... mips64el-linux-gnuabi64-ar checking for archiver @FILE support... @ checking for mips64el-linux-gnuabi64-strip... mips64el-linux-gnuabi64-strip checking for mips64el-linux-gnuabi64-ranlib... mips64el-linux-gnuabi64-ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/mips64el-linux-gnuabi64-nm -B output from mips64el-linux-gnuabi64-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mips64el-linux-gnuabi64-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mips64el-linux-gnuabi64-gcc supports -fno-rtti -fno-exceptions... no checking for mips64el-linux-gnuabi64-gcc option to produce PIC... -fPIC -DPIC checking if mips64el-linux-gnuabi64-gcc PIC flag -fPIC -DPIC works... yes checking if mips64el-linux-gnuabi64-gcc static flag -static works... yes checking if mips64el-linux-gnuabi64-gcc supports -c -o file.o... yes checking if mips64el-linux-gnuabi64-gcc supports -c -o file.o... (cached) yes checking whether the mips64el-linux-gnuabi64-gcc linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mips64el-linux-gnuabi64-strip... (cached) mips64el-linux-gnuabi64-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of mips64el-linux-gnuabi64-gcc... none checking whether we are cross compiling... yes checking for mips64el-linux-gnuabi64-gcc... (cached) mips64el-linux-gnuabi64-gcc checking whether the compiler supports GNU C... (cached) yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... (cached) yes checking for mips64el-linux-gnuabi64-gcc option to enable C11 features... (cached) none needed checking whether mips64el-linux-gnuabi64-gcc understands -c and -o together... (cached) yes checking for mips64el-linux-gnuabi64-g++... mips64el-linux-gnuabi64-g++ checking whether the compiler supports GNU C++... yes checking whether mips64el-linux-gnuabi64-g++ accepts -g... yes checking for mips64el-linux-gnuabi64-g++ option to enable C++11 features... none needed checking how to run the C++ preprocessor... mips64el-linux-gnuabi64-g++ -E checking for ld used by mips64el-linux-gnuabi64-g++... /usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip checking if the linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) is GNU ld... yes checking whether the mips64el-linux-gnuabi64-g++ linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking for mips64el-linux-gnuabi64-g++ option to produce PIC... -fPIC -DPIC checking if mips64el-linux-gnuabi64-g++ PIC flag -fPIC -DPIC works... yes checking if mips64el-linux-gnuabi64-g++ static flag -static works... yes checking if mips64el-linux-gnuabi64-g++ supports -c -o file.o... yes checking if mips64el-linux-gnuabi64-g++ supports -c -o file.o... (cached) yes checking whether the mips64el-linux-gnuabi64-g++ linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of mips64el-linux-gnuabi64-g++... none checking whether the C++ compiler supports the -fsanitize=address flag... yes configure: Adding optimisation options to C compiler mips64el-linux-gnuabi64-gcc flags, full list now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security configure: Adding optimisation options to C++ compiler mips64el-linux-gnuabi64-g++ flags, full list now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security checking for mips64el-linux-gnuabi64-pkg-config... /usr/bin/mips64el-linux-gnuabi64-pkg-config checking pkg-config is at least version 0.9.0... yes checking for egrep... (cached) /usr/bin/grep -E checking for libmaus2 >= 2.0.800... yes checking whether we can compile a program using libmaus2... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE... yes checking whether libmaus2 has support for io_lib... no checking for bash... /usr/bin/bash checking for base64... /usr/bin/base64 checking for xerces-c >= 3.1.1... yes configure: Using flags -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C compiler mips64el-linux-gnuabi64-gcc configure: Using flags -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C++ compiler mips64el-linux-gnuabi64-g++ checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/biobambam2/BamBamConfig.hpp config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtofastq-bamtofastq.o `test -f 'programs/bamtofastq.cpp' || echo './'`programs/bamtofastq.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtofastq-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicates-bammarkduplicates.o `test -f 'programs/bammarkduplicates.cpp' || echo './'`programs/bammarkduplicates.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsort-bamsort.o `test -f 'programs/bamsort.cpp' || echo './'`programs/bamsort.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammaskflags-bammaskflags.o `test -f 'programs/bammaskflags.cpp' || echo './'`programs/bammaskflags.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammaskflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrecompress-bamrecompress.o `test -f 'programs/bamrecompress.cpp' || echo './'`programs/bamrecompress.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrecompress-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterfind-bamadapterfind.o `test -f 'programs/bamadapterfind.cpp' || echo './'`programs/bamadapterfind.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. 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-fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilteraux-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxsort-bamauxsort.o `test -f 'programs/bamauxsort.cpp' || echo './'`programs/bamauxsort.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterclip-bamadapterclip.o `test -f 'programs/bamadapterclip.cpp' || echo './'`programs/bamadapterclip.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterclip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterclip-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamadapterclip 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`test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamcollate2 programs/bamcollate2-bamcollate2.o biobambam2/bamcollate2-Licensing.o biobambam2/bamcollate2-AttachRank.o biobambam2/bamcollate2-ResetAlignment.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamcollate2 programs/bamcollate2-bamcollate2.o biobambam2/bamcollate2-Licensing.o biobambam2/bamcollate2-AttachRank.o biobambam2/bamcollate2-ResetAlignment.o -fopenmp -lmaus2 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'biobambam2/zzToName.cpp' || echo './'`biobambam2/zzToName.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bam12auxmerge programs/bam12auxmerge-bam12auxmerge.o biobambam2/bam12auxmerge-Licensing.o biobambam2/bam12auxmerge-Split12.o biobambam2/bam12auxmerge-Strip12.o biobambam2/bam12auxmerge-ClipReinsert.o biobambam2/bam12auxmerge-zzToName.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bam12auxmerge programs/bam12auxmerge-bam12auxmerge.o biobambam2/bam12auxmerge-Licensing.o biobambam2/bam12auxmerge-Split12.o biobambam2/bam12auxmerge-Strip12.o biobambam2/bam12auxmerge-ClipReinsert.o biobambam2/bam12auxmerge-zzToName.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12split-bam12split.o `test -f 'programs/bam12split.cpp' || echo './'`programs/bam12split.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12split-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time 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biobambam2/bam12split-Split12.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12strip-bam12strip.o `test -f 'programs/bam12strip.cpp' || echo './'`programs/bam12strip.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12strip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong 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-DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammerge-bammerge.o `test -f 'programs/bammerge.cpp' || echo './'`programs/bammerge.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bammerge programs/bammerge-bammerge.o biobambam2/bammerge-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 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fastqtobam programs/fastqtobam-fastqtobam.o biobambam2/fastqtobam-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixmateinformation-bamfixmateinformation.o `test -f 'programs/bamfixmateinformation.cpp' || echo './'`programs/bamfixmateinformation.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixmateinformation-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link 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biobambam2/bamintervalcomment-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamintervalcommenthist-bamintervalcommenthist.o `test -f 'programs/bamintervalcommenthist.cpp' || echo './'`programs/bamintervalcommenthist.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamintervalcommenthist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 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-fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o `test -f 'programs/bamstreamingmarkduplicates.cpp' || echo './'`programs/bamstreamingmarkduplicates.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamstreamingmarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamstreamingmarkduplicates programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o biobambam2/bamstreamingmarkduplicates-Licensing.o -lmaus2 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biobambam2/bamfillquery-AttachRank.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrefextract-bamrefextract.o `test -f 'programs/bamrefextract.cpp' || echo './'`programs/bamrefextract.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrefextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 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`test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o fastqtobam2 programs/fastqtobam2-fastqtobam2.o biobambam2/fastqtobam2-Licensing.o biobambam2/fastqtobam2-KmerPoisson.o biobambam2/fastqtobam2-RunEOFFilter.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastqtobam2 programs/fastqtobam2-fastqtobam2.o biobambam2/fastqtobam2-Licensing.o biobambam2/fastqtobam2-KmerPoisson.o biobambam2/fastqtobam2-RunEOFFilter.o -fopenmp -lmaus2 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biobambam2/bamauxmerge2-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamauxmerge2 programs/bamauxmerge2-bamauxmerge2.o biobambam2/bamauxmerge2-Licensing.o biobambam2/bamauxmerge2-KmerPoisson.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxmerge2 programs/bamauxmerge2-bamauxmerge2.o biobambam2/bamauxmerge2-Licensing.o biobambam2/bamauxmerge2-KmerPoisson.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreheader-bamreheader.o `test -f 'programs/bamreheader.cpp' || echo './'`programs/bamreheader.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreheader-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamreheader programs/bamreheader-bamreheader.o biobambam2/bamreheader-Licensing.o biobambam2/bamreheader-ReadHeader.o biobambam2/bamreheader-RunEOFFilter.o biobambam2/bamreheader-UpdateNumericalIndex.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamreheader programs/bamreheader-bamreheader.o biobambam2/bamreheader-Licensing.o biobambam2/bamreheader-ReadHeader.o biobambam2/bamreheader-RunEOFFilter.o biobambam2/bamreheader-UpdateNumericalIndex.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreplacechecksums-bamreplacechecksums.o `test -f 'programs/bamreplacechecksums.cpp' || echo './'`programs/bamreplacechecksums.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o `test -f 'biobambam2/UpdateNumericalIndex.cpp' || echo './'`biobambam2/UpdateNumericalIndex.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamreplacechecksums programs/bamreplacechecksums-bamreplacechecksums.o biobambam2/bamreplacechecksums-Licensing.o biobambam2/bamreplacechecksums-ReadHeader.o biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamreplacechecksums programs/bamreplacechecksums-bamreplacechecksums.o biobambam2/bamreplacechecksums-Licensing.o biobambam2/bamreplacechecksums-ReadHeader.o biobambam2/bamreplacechecksums-RunEOFFilter.o biobambam2/bamreplacechecksums-UpdateNumericalIndex.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfastcat-bamfastcat.o `test -f 'programs/bamfastcat.cpp' || echo './'`programs/bamfastcat.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfastcat-ReadHeader.o `test -f 'biobambam2/ReadHeader.cpp' || echo './'`biobambam2/ReadHeader.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. 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biobambam2/bamfastcat-ReadHeader.o biobambam2/bamfastcat-RunEOFFilter.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/populaterefcache-populaterefcache.o `test -f 'programs/populaterefcache.cpp' || echo './'`programs/populaterefcache.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/populaterefcache-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o populaterefcache programs/populaterefcache-populaterefcache.o biobambam2/populaterefcache-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o populaterefcache programs/populaterefcache-populaterefcache.o biobambam2/populaterefcache-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfiltereofblocks-bamfiltereofblocks.o `test -f 'programs/bamfiltereofblocks.cpp' || echo './'`programs/bamfiltereofblocks.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfiltereofblocks-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfiltereofblocks-RunEOFFilter.o `test -f 'biobambam2/RunEOFFilter.cpp' || echo './'`biobambam2/RunEOFFilter.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong 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-I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdepth-bamdepth.o `test -f 'programs/bamdepth.cpp' || echo './'`programs/bamdepth.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepth-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdepth-DepthInterval.o `test -f 'biobambam2/DepthInterval.cpp' || echo './'`biobambam2/DepthInterval.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong 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biobambam2/bamfilterk-DepthInterval.o biobambam2/bamfilterk-RunEOFFilter.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixpairinfo-bamfixpairinfo.o `test -f 'programs/bamfixpairinfo.cpp' || echo './'`programs/bamfixpairinfo.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixpairinfo-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time 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biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtoname-bamtoname.o `test -f 'programs/bamtoname.cpp' || echo './'`programs/bamtoname.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtoname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 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-lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamaddne programs/bamaddne-bamaddne.o biobambam2/bamaddne-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterhistogram-bamadapterhistogram.o `test -f 'programs/bamadapterhistogram.cpp' || echo './'`programs/bamadapterhistogram.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterhistogram-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamadapterhistogram programs/bamadapterhistogram-bamadapterhistogram.o biobambam2/bamadapterhistogram-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamadapterhistogram programs/bamadapterhistogram-bamadapterhistogram.o biobambam2/bamadapterhistogram-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsalvage-bamsalvage.o `test -f 'programs/bamsalvage.cpp' || echo './'`programs/bamsalvage.cpp mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsalvage-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z,relro -Wl,-z,now -o bamsalvage programs/bamsalvage-bamsalvage.o biobambam2/bamsalvage-Licensing.o -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -fopenmp -lz libtool: link: mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++17 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsalvage programs/bamsalvage-bamsalvage.o biobambam2/bamsalvage-Licensing.o -fopenmp -lmaus2 -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_arch -lmaus2_simd_align_128 -lmaus2_simd_align_256 -lmaus2_demangle -lz -fopenmp make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/biobambam2/ -a make -j1 install DESTDIR=/<>/biobambam2-2.0.185\+ds/debian/biobambam2 AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/biobambam2/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c bamtofastq bammarkduplicates bamsort bammaskflags bamrecompress bamadapterfind bamfilteraux bamauxsort bamadapterclip bamcollate2 bam12auxmerge bam12split bam12strip bamreset bamrank bamclipreinsert bamclipXT bamzztoname bamindex bamfilterflags bamfilterrg bamdownsamplerandom bammarkduplicates2 bamcat bammerge bamsplit bamfastsplit bamsplitdiv bamchecksort fastqtobam bamfixmateinformation bamseqchksum normalisefasta bamfilterheader bamfilterheader2 bammdnm bammapdist bamvalidate bamflagsplit bamintervalcomment bamintervalcommenthist bamstreamingmarkduplicates bamalignfrac bamfilternames bamsormadup bamexplode bamexploderef bamfastexploderef bamfastnumextract bamranksort fastaexplod bamrecalculatecigar bamfiltermc bamnumericalindex bamnumericalindexstats bammarkduplicatesopt bamfilterlength bamauxmerge bamrefinterval bamscrapcount bamfilterrefid bamfillquery bamrefextract fastqtobam2 bamauxmerge2 bamreheader bamreplacechecksums bamfastcat populaterefcache bamfiltereofblocks bamdepth bamdepthintersect bamfilterk bamfixpairinfo bamdifference bamfeaturecount '/<>/debian/biobambam2/usr/bin' libtool: install: /usr/bin/install -c bamtofastq /<>/debian/biobambam2/usr/bin/bamtofastq libtool: install: /usr/bin/install -c bammarkduplicates /<>/debian/biobambam2/usr/bin/bammarkduplicates libtool: install: /usr/bin/install -c bamsort /<>/debian/biobambam2/usr/bin/bamsort libtool: install: /usr/bin/install -c bammaskflags /<>/debian/biobambam2/usr/bin/bammaskflags libtool: install: /usr/bin/install -c bamrecompress /<>/debian/biobambam2/usr/bin/bamrecompress libtool: install: /usr/bin/install -c bamadapterfind /<>/debian/biobambam2/usr/bin/bamadapterfind libtool: install: /usr/bin/install -c bamfilteraux /<>/debian/biobambam2/usr/bin/bamfilteraux libtool: install: /usr/bin/install -c bamauxsort /<>/debian/biobambam2/usr/bin/bamauxsort libtool: install: /usr/bin/install -c bamadapterclip /<>/debian/biobambam2/usr/bin/bamadapterclip libtool: install: /usr/bin/install -c bamcollate2 /<>/debian/biobambam2/usr/bin/bamcollate2 libtool: install: /usr/bin/install -c bam12auxmerge /<>/debian/biobambam2/usr/bin/bam12auxmerge libtool: install: /usr/bin/install -c bam12split /<>/debian/biobambam2/usr/bin/bam12split libtool: install: /usr/bin/install -c bam12strip /<>/debian/biobambam2/usr/bin/bam12strip libtool: install: /usr/bin/install -c bamreset /<>/debian/biobambam2/usr/bin/bamreset libtool: install: /usr/bin/install -c bamrank /<>/debian/biobambam2/usr/bin/bamrank libtool: install: /usr/bin/install -c bamclipreinsert /<>/debian/biobambam2/usr/bin/bamclipreinsert libtool: install: /usr/bin/install -c bamclipXT /<>/debian/biobambam2/usr/bin/bamclipXT libtool: install: /usr/bin/install -c bamzztoname /<>/debian/biobambam2/usr/bin/bamzztoname libtool: install: /usr/bin/install -c bamindex /<>/debian/biobambam2/usr/bin/bamindex libtool: install: /usr/bin/install -c bamfilterflags /<>/debian/biobambam2/usr/bin/bamfilterflags libtool: install: /usr/bin/install -c bamfilterrg /<>/debian/biobambam2/usr/bin/bamfilterrg libtool: install: /usr/bin/install -c bamdownsamplerandom /<>/debian/biobambam2/usr/bin/bamdownsamplerandom libtool: install: /usr/bin/install -c bammarkduplicates2 /<>/debian/biobambam2/usr/bin/bammarkduplicates2 libtool: install: /usr/bin/install -c bamcat /<>/debian/biobambam2/usr/bin/bamcat libtool: install: /usr/bin/install -c bammerge /<>/debian/biobambam2/usr/bin/bammerge libtool: install: /usr/bin/install -c bamsplit /<>/debian/biobambam2/usr/bin/bamsplit libtool: install: /usr/bin/install -c bamfastsplit /<>/debian/biobambam2/usr/bin/bamfastsplit libtool: install: /usr/bin/install -c bamsplitdiv /<>/debian/biobambam2/usr/bin/bamsplitdiv libtool: install: /usr/bin/install -c bamchecksort /<>/debian/biobambam2/usr/bin/bamchecksort libtool: install: /usr/bin/install -c fastqtobam /<>/debian/biobambam2/usr/bin/fastqtobam libtool: install: /usr/bin/install -c bamfixmateinformation /<>/debian/biobambam2/usr/bin/bamfixmateinformation libtool: install: /usr/bin/install -c bamseqchksum /<>/debian/biobambam2/usr/bin/bamseqchksum libtool: install: /usr/bin/install -c normalisefasta /<>/debian/biobambam2/usr/bin/normalisefasta libtool: install: /usr/bin/install -c bamfilterheader /<>/debian/biobambam2/usr/bin/bamfilterheader libtool: install: /usr/bin/install -c bamfilterheader2 /<>/debian/biobambam2/usr/bin/bamfilterheader2 libtool: install: /usr/bin/install -c bammdnm /<>/debian/biobambam2/usr/bin/bammdnm libtool: install: /usr/bin/install -c bammapdist /<>/debian/biobambam2/usr/bin/bammapdist libtool: install: /usr/bin/install -c bamvalidate /<>/debian/biobambam2/usr/bin/bamvalidate libtool: install: /usr/bin/install -c bamflagsplit /<>/debian/biobambam2/usr/bin/bamflagsplit libtool: install: /usr/bin/install -c bamintervalcomment /<>/debian/biobambam2/usr/bin/bamintervalcomment libtool: install: /usr/bin/install -c bamintervalcommenthist /<>/debian/biobambam2/usr/bin/bamintervalcommenthist libtool: install: /usr/bin/install -c bamstreamingmarkduplicates /<>/debian/biobambam2/usr/bin/bamstreamingmarkduplicates libtool: install: /usr/bin/install -c bamalignfrac /<>/debian/biobambam2/usr/bin/bamalignfrac libtool: install: /usr/bin/install -c bamfilternames /<>/debian/biobambam2/usr/bin/bamfilternames libtool: install: /usr/bin/install -c bamsormadup /<>/debian/biobambam2/usr/bin/bamsormadup libtool: install: /usr/bin/install -c bamexplode /<>/debian/biobambam2/usr/bin/bamexplode libtool: install: /usr/bin/install -c bamexploderef /<>/debian/biobambam2/usr/bin/bamexploderef libtool: install: /usr/bin/install -c bamfastexploderef /<>/debian/biobambam2/usr/bin/bamfastexploderef libtool: install: /usr/bin/install -c bamfastnumextract /<>/debian/biobambam2/usr/bin/bamfastnumextract libtool: install: /usr/bin/install -c bamranksort /<>/debian/biobambam2/usr/bin/bamranksort libtool: install: /usr/bin/install -c fastaexplod /<>/debian/biobambam2/usr/bin/fastaexplod libtool: install: /usr/bin/install -c bamrecalculatecigar /<>/debian/biobambam2/usr/bin/bamrecalculatecigar libtool: install: /usr/bin/install -c bamfiltermc /<>/debian/biobambam2/usr/bin/bamfiltermc libtool: install: /usr/bin/install -c bamnumericalindex /<>/debian/biobambam2/usr/bin/bamnumericalindex libtool: install: /usr/bin/install -c bamnumericalindexstats /<>/debian/biobambam2/usr/bin/bamnumericalindexstats libtool: install: /usr/bin/install -c bammarkduplicatesopt /<>/debian/biobambam2/usr/bin/bammarkduplicatesopt libtool: install: /usr/bin/install -c bamfilterlength /<>/debian/biobambam2/usr/bin/bamfilterlength libtool: install: /usr/bin/install -c bamauxmerge /<>/debian/biobambam2/usr/bin/bamauxmerge libtool: install: /usr/bin/install -c bamrefinterval /<>/debian/biobambam2/usr/bin/bamrefinterval libtool: install: /usr/bin/install -c bamscrapcount /<>/debian/biobambam2/usr/bin/bamscrapcount libtool: install: /usr/bin/install -c bamfilterrefid /<>/debian/biobambam2/usr/bin/bamfilterrefid libtool: install: /usr/bin/install -c bamfillquery /<>/debian/biobambam2/usr/bin/bamfillquery libtool: install: /usr/bin/install -c bamrefextract /<>/debian/biobambam2/usr/bin/bamrefextract libtool: install: /usr/bin/install -c fastqtobam2 /<>/debian/biobambam2/usr/bin/fastqtobam2 libtool: install: /usr/bin/install -c bamauxmerge2 /<>/debian/biobambam2/usr/bin/bamauxmerge2 libtool: install: /usr/bin/install -c bamreheader /<>/debian/biobambam2/usr/bin/bamreheader libtool: install: /usr/bin/install -c bamreplacechecksums /<>/debian/biobambam2/usr/bin/bamreplacechecksums libtool: install: /usr/bin/install -c bamfastcat /<>/debian/biobambam2/usr/bin/bamfastcat libtool: install: /usr/bin/install -c populaterefcache /<>/debian/biobambam2/usr/bin/populaterefcache libtool: install: /usr/bin/install -c bamfiltereofblocks /<>/debian/biobambam2/usr/bin/bamfiltereofblocks libtool: install: /usr/bin/install -c bamdepth /<>/debian/biobambam2/usr/bin/bamdepth libtool: install: /usr/bin/install -c bamdepthintersect /<>/debian/biobambam2/usr/bin/bamdepthintersect libtool: install: /usr/bin/install -c bamfilterk /<>/debian/biobambam2/usr/bin/bamfilterk libtool: install: /usr/bin/install -c bamfixpairinfo /<>/debian/biobambam2/usr/bin/bamfixpairinfo libtool: install: /usr/bin/install -c bamdifference /<>/debian/biobambam2/usr/bin/bamdifference libtool: install: /usr/bin/install -c bamfeaturecount /<>/debian/biobambam2/usr/bin/bamfeaturecount /usr/bin/mkdir -p '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/bamtofastq.1 programs/bamsort.1 programs/bammarkduplicates.1 programs/bammarkduplicatesopt.1 programs/bammaskflags.1 programs/bamrecompress.1 programs/bamadapterfind.1 programs/bamfilteraux.1 programs/bamauxsort.1 programs/bamadapterclip.1 programs/bamcollate2.1 programs/bam12auxmerge.1 programs/bam12split.1 programs/bam12strip.1 programs/bamreset.1 programs/bamrank.1 programs/bamclipreinsert.1 programs/bamzztoname.1 programs/bamindex.1 programs/bamfilterflags.1 programs/bamfilterrg.1 programs/bamdownsamplerandom.1 programs/bammarkduplicates2.1 programs/bamcat.1 programs/bammerge.1 programs/bamsplit.1 programs/bamsplitdiv.1 programs/bamchecksort.1 programs/fastqtobam.1 programs/bamfixmateinformation.1 programs/normalisefasta.1 programs/bamfilterheader.1 programs/bamfilterheader2.1 programs/bammdnm.1 programs/bamseqchksum.1 programs/bamvalidate.1 programs/bamflagsplit.1 programs/bamintervalcomment.1 programs/bamstreamingmarkduplicates.1 programs/bamsormadup.1 '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/fastaexplod.1 programs/bamrecalculatecigar.1 programs/bamfiltermc.1 programs/bamfillquery.1 programs/bamalignfrac.1 programs/bamauxmerge.1 programs/bamauxmerge2.1 programs/bambisect.1 programs/bamclipXT.1 programs/bamconsensus.1 programs/filtergtf.1 programs/bamfeaturecount.1 '/<>/debian/biobambam2/usr/share/man/man1' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'biobambam2' in '../biobambam2_2.0.185+ds-2_mips64el.deb'. dpkg-deb: building package 'biobambam2-dbgsym' in '../biobambam2-dbgsym_2.0.185+ds-2_mips64el.deb'. dpkg-genbuildinfo --build=any -O../biobambam2_2.0.185+ds-2_mips64el.buildinfo dpkg-genchanges --build=any -O../biobambam2_2.0.185+ds-2_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-28T15:05:08Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ biobambam2_2.0.185+ds-2_mips64el.changes: ----------------------------------------- Format: 1.8 Date: Fri, 19 Apr 2024 17:24:26 +0200 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 2.0.185+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: biobambam2 - tools for early stage alignment file processing Changes: biobambam2 (2.0.185+ds-2) unstable; urgency=medium . * d/watch: repair gitlab watch file. This instructs uscan to use git ls-remote mode. * d/control: declare compliance to standards version 4.7.0. * d/control: move from pkg-config to pkgconf. Checksums-Sha1: c814c38434c1d116306e55e6fcfa97492d6a9e84 205032508 biobambam2-dbgsym_2.0.185+ds-2_mips64el.deb 79e1fcef937e6718a82387a841a6299522e461e6 6842 biobambam2_2.0.185+ds-2_mips64el.buildinfo f5ee2b4dffa852a218f9b8862ae38d985dc8b260 7029984 biobambam2_2.0.185+ds-2_mips64el.deb Checksums-Sha256: bc5817b0cf7840dfcd1cd529bf85a6f96147e66cb830d6d9dfb3a0b16ae56992 205032508 biobambam2-dbgsym_2.0.185+ds-2_mips64el.deb eaa0b830369a7144f8e00ac9e962fc4ca29d7ddb5601c7dba5b5ecdbf86febfa 6842 biobambam2_2.0.185+ds-2_mips64el.buildinfo 488e4a9fada99c248781faeb4b40121d8dd3606afe8101b7b207b892defd78b8 7029984 biobambam2_2.0.185+ds-2_mips64el.deb Files: 9861fb1f09e117235b83e582f9e4660e 205032508 debug optional biobambam2-dbgsym_2.0.185+ds-2_mips64el.deb 6a593d5153c71e9108c3410e95362b2a 6842 science optional biobambam2_2.0.185+ds-2_mips64el.buildinfo 14cda8c5d499fe571dbd87014281117e 7029984 science optional biobambam2_2.0.185+ds-2_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Architecture: mips64el Version: 2.0.185+ds-2 Checksums-Md5: 9861fb1f09e117235b83e582f9e4660e 205032508 biobambam2-dbgsym_2.0.185+ds-2_mips64el.deb 14cda8c5d499fe571dbd87014281117e 7029984 biobambam2_2.0.185+ds-2_mips64el.deb Checksums-Sha1: c814c38434c1d116306e55e6fcfa97492d6a9e84 205032508 biobambam2-dbgsym_2.0.185+ds-2_mips64el.deb f5ee2b4dffa852a218f9b8862ae38d985dc8b260 7029984 biobambam2_2.0.185+ds-2_mips64el.deb Checksums-Sha256: bc5817b0cf7840dfcd1cd529bf85a6f96147e66cb830d6d9dfb3a0b16ae56992 205032508 biobambam2-dbgsym_2.0.185+ds-2_mips64el.deb 488e4a9fada99c248781faeb4b40121d8dd3606afe8101b7b207b892defd78b8 7029984 biobambam2_2.0.185+ds-2_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 28 Apr 2024 15:05:06 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: adduser (= 3.137), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13.1), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.40-8), bsdutils (= 1:2.40-8), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-23), cpp-13-x86-64-linux-gnu (= 13.2.0-23), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dirmngr (= 2.2.40-3), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-23), g++-13-x86-64-linux-gnu (= 13.2.0-23), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-23), gcc-13-base (= 13.2.0-23), gcc-13-x86-64-linux-gnu (= 13.2.0-23), gcc-14-base (= 14-20240330-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), gnupg (= 2.2.40-3), gnupg-l10n (= 2.2.40-3), gnupg-utils (= 2.2.40-3), gpg (= 2.2.40-3), gpg-agent (= 2.2.40-3), gpg-wks-client (= 2.2.40-3), gpg-wks-server (= 2.2.40-3), gpgconf (= 2.2.40-3), gpgsm (= 2.2.40-3), gpgv (= 2.2.40-3), grep (= 3.11-4), groff-base (= 1.23.0-3+b1), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), icu-devtools (= 72.1-4+b1), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240330-1), libassuan0 (= 2.5.6-1+b1), libatomic1 (= 14-20240330-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libblkid1 (= 2.40-8), libbrotli1 (= 1.1.0-2+b3), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.37-18), libc-dev-bin (= 2.37-18), libc6 (= 2.37-18), libc6-dev (= 2.37-18), libcap-ng0 (= 0.8.5-1), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240330-1), libcom-err2 (= 1.47.0-2.4), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libcurl3t64-gnutls (= 8.7.1-4), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.271+b3), libdebhelper-perl (= 13.15.3), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-23), libgcc-s1 (= 14-20240330-1), libgcrypt20 (= 1.10.3-2+b1), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.5-2), libgomp1 (= 14-20240330-1), libgpg-error0 (= 1.47-3+b1), libgpgme11t64 (= 1.18.0-4.1+b1), libgprofng0 (= 2.42-4), libgssapi-krb5-2 (= 1.20.1-6+b1), libhogweed6t64 (= 3.9.1-2.2), libhwasan0 (= 14-20240330-1), libicu-dev (= 72.1-4+b1), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240330-1), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.20.1-6+b1), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-6+b1), libkrb5support0 (= 1.20.1-6+b1), libksba8 (= 1.6.6-1), libldap-2.5-0 (= 2.5.17+dfsg-1), liblsan0 (= 14-20240330-1), liblz4-1 (= 1.9.4-2), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmaus2-2 (= 2.0.813+ds-2), libmaus2-dev (= 2.0.813+ds-2), libmd0 (= 1.1.0-2), libmount1 (= 2.40-8), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.4+20240414-1), libnettle8t64 (= 3.9.1-2.2), libnghttp2-14 (= 1.61.0-1+b1), libnpth0t64 (= 1.6-3.1), libp11-kit0 (= 0.25.3-4), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-4), libpipeline1 (= 1.5.7-2), libpkgconf3 (= 1.8.1-1+b2), libpsl5t64 (= 0.21.2-1.1), libquadmath0 (= 14-20240330-1), libreadline8t64 (= 8.2-4), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4), libsasl2-2 (= 2.1.28+dfsg1-6), libsasl2-modules-db (= 2.1.28+dfsg1-6), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1+b3), libsepol2 (= 3.5-2+b1), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40-8), libsqlite3-0 (= 3.45.3-1), libssh2-1t64 (= 1.11.0-4.1+b2), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-23), libstdc++6 (= 14-20240330-1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.5-1), libtasn1-6 (= 4.19.0-3+b2), libtinfo6 (= 6.4+20240414-1), libtool (= 2.4.7-7), libtsan2 (= 14-20240330-1), libubsan1 (= 14-20240330-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.5-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40-8), libxerces-c-dev (= 3.2.4+debian-1.3), libxerces-c3.2t64 (= 3.2.4+debian-1.3), libxml2 (= 2.9.14+dfsg-1.3+b3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.7.12-1), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240414-1), ncurses-bin (= 6.4+20240414-1), passwd (= 1:4.13+dfsg1-4), patch (= 2.7.6-7), perl (= 5.38.2-4), perl-base (= 5.38.2-4), perl-modules-5.38 (= 5.38.2-4), pinentry-curses (= 1.2.1-3+b2), pkgconf (= 1.8.1-1+b2), pkgconf-bin (= 1.8.1-1+b2), po-debconf (= 1.0.21+nmu1), readline-common (= 8.2-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.09-1), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40-8), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1), zlib1g-dev (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1713540266" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ biobambam2-dbgsym_2.0.185+ds-2_mips64el.deb ------------------------------------------- new Debian package, version 2.0. size 205032508 bytes: control archive=3988 bytes. 3473 bytes, 12 lines control 8150 bytes, 77 lines md5sums Package: biobambam2-dbgsym Source: biobambam2 Version: 2.0.185+ds-2 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 215327 Depends: biobambam2 (= 2.0.185+ds-2) Section: debug Priority: optional Description: debug symbols for biobambam2 Build-Ids: 0b01fe03f161bde352a93abe135d88135f2d9285 0bdffb603b8dddbe132559af10b2f179468a05b4 11e390405d883685d42398255ceb75916f0881de 18a85daed87b10f5154bfea6bc0add246376eddb 24ba24f5cc08d1ee4409aae5f55713b62a13e3da 25cea68f25275eaf71e1d525608a024ba2f33631 27e593d9d1f25fa13691d0e7ba9f2e840c07d22c 2ae44cf3747896ef46ca3e91fce045fdd1301eb3 2b1913e942c8b5347cc74aaa074a7efa213214b7 30634ffff67e1331c6cc49ea0aaf4727ad7948a6 388161792d018389870ab9a4e45707389fc3bd0d 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(>= 6), libmaus2-2 (>= 2.0.813+ds), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://gitlab.com/german.tischler/biobambam2 Description: tools for early stage alignment file processing This package contains some tools for processing BAM files, including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name drwxr-xr-x root/root 0 2024-04-19 15:24 ./ drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/ drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/bin/ -rwxr-xr-x root/root 1160560 2024-04-19 15:24 ./usr/bin/bam12auxmerge -rwxr-xr-x root/root 1025160 2024-04-19 15:24 ./usr/bin/bam12split -rwxr-xr-x root/root 1025208 2024-04-19 15:24 ./usr/bin/bam12strip -rwxr-xr-x root/root 1025888 2024-04-19 15:24 ./usr/bin/bamadapterclip -rwxr-xr-x root/root 1161680 2024-04-19 15:24 ./usr/bin/bamadapterfind -rwxr-xr-x root/root 890696 2024-04-19 15:24 ./usr/bin/bamalignfrac -rwxr-xr-x root/root 1093208 2024-04-19 15:24 ./usr/bin/bamauxmerge -rwxr-xr-x root/root 686080 2024-04-19 15:24 ./usr/bin/bamauxmerge2 -rwxr-xr-x root/root 1025368 2024-04-19 15:24 ./usr/bin/bamauxsort -rwxr-xr-x root/root 1024336 2024-04-19 15:24 ./usr/bin/bamcat -rwxr-xr-x root/root 889752 2024-04-19 15:24 ./usr/bin/bamchecksort -rwxr-xr-x root/root 958792 2024-04-19 15:24 ./usr/bin/bamclipXT -rwxr-xr-x root/root 1026128 2024-04-19 15:24 ./usr/bin/bamclipreinsert -rwxr-xr-x root/root 1229504 2024-04-19 15:24 ./usr/bin/bamcollate2 -rwxr-xr-x root/root 890224 2024-04-19 15:24 ./usr/bin/bamdepth -rwxr-xr-x root/root 958560 2024-04-19 15:24 ./usr/bin/bamdepthintersect -rwxr-xr-x root/root 1024960 2024-04-19 15:24 ./usr/bin/bamdifference -rwxr-xr-x root/root 1162336 2024-04-19 15:24 ./usr/bin/bamdownsamplerandom -rwxr-xr-x root/root 957872 2024-04-19 15:24 ./usr/bin/bamexplode -rwxr-xr-x root/root 754128 2024-04-19 15:24 ./usr/bin/bamexploderef -rwxr-xr-x root/root 485752 2024-04-19 15:24 ./usr/bin/bamfastcat -rwxr-xr-x root/root 890392 2024-04-19 15:24 ./usr/bin/bamfastexploderef -rwxr-xr-x root/root 482000 2024-04-19 15:24 ./usr/bin/bamfastnumextract -rwxr-xr-x root/root 482424 2024-04-19 15:24 ./usr/bin/bamfastsplit -rwxr-xr-x root/root 1363200 2024-04-19 15:24 ./usr/bin/bamfeaturecount -rwxr-xr-x root/root 1093360 2024-04-19 15:24 ./usr/bin/bamfillquery -rwxr-xr-x root/root 1025128 2024-04-19 15:24 ./usr/bin/bamfilteraux -rwxr-xr-x root/root 70224 2024-04-19 15:24 ./usr/bin/bamfiltereofblocks -rwxr-xr-x root/root 1093808 2024-04-19 15:24 ./usr/bin/bamfilterflags -rwxr-xr-x root/root 1092872 2024-04-19 15:24 ./usr/bin/bamfilterheader -rwxr-xr-x root/root 273888 2024-04-19 15:24 ./usr/bin/bamfilterheader2 -rwxr-xr-x root/root 1025448 2024-04-19 15:24 ./usr/bin/bamfilterk -rwxr-xr-x root/root 1092480 2024-04-19 15:24 ./usr/bin/bamfilterlength -rwxr-xr-x root/root 1093096 2024-04-19 15:24 ./usr/bin/bamfiltermc -rwxr-xr-x root/root 1025080 2024-04-19 15:24 ./usr/bin/bamfilternames -rwxr-xr-x root/root 1025048 2024-04-19 15:24 ./usr/bin/bamfilterrefid -rwxr-xr-x root/root 1025048 2024-04-19 15:24 ./usr/bin/bamfilterrg -rwxr-xr-x root/root 1024896 2024-04-19 15:24 ./usr/bin/bamfixmateinformation -rwxr-xr-x root/root 1093048 2024-04-19 15:24 ./usr/bin/bamfixpairinfo -rwxr-xr-x root/root 958088 2024-04-19 15:24 ./usr/bin/bamflagsplit -rwxr-xr-x root/root 479872 2024-04-19 15:24 ./usr/bin/bamindex -rwxr-xr-x root/root 1161304 2024-04-19 15:24 ./usr/bin/bamintervalcomment -rwxr-xr-x root/root 890680 2024-04-19 15:24 ./usr/bin/bamintervalcommenthist -rwxr-xr-x root/root 890000 2024-04-19 15:24 ./usr/bin/bammapdist -rwxr-xr-x root/root 1366592 2024-04-19 15:24 ./usr/bin/bammarkduplicates -rwxr-xr-x root/root 1433848 2024-04-19 15:24 ./usr/bin/bammarkduplicates2 -rwxr-xr-x root/root 1502288 2024-04-19 15:24 ./usr/bin/bammarkduplicatesopt -rwxr-xr-x root/root 1025152 2024-04-19 15:24 ./usr/bin/bammaskflags -rwxr-xr-x root/root 684440 2024-04-19 15:24 ./usr/bin/bammdnm -rwxr-xr-x root/root 1092792 2024-04-19 15:24 ./usr/bin/bammerge -rwxr-xr-x root/root 411960 2024-04-19 15:24 ./usr/bin/bamnumericalindex -rwxr-xr-x root/root 413944 2024-04-19 15:24 ./usr/bin/bamnumericalindexstats -rwxr-xr-x root/root 1025304 2024-04-19 15:24 ./usr/bin/bamrank -rwxr-xr-x root/root 959000 2024-04-19 15:24 ./usr/bin/bamranksort -rwxr-xr-x root/root 1093384 2024-04-19 15:24 ./usr/bin/bamrecalculatecigar -rwxr-xr-x root/root 549352 2024-04-19 15:24 ./usr/bin/bamrecompress -rwxr-xr-x root/root 958496 2024-04-19 15:24 ./usr/bin/bamrefextract -rwxr-xr-x root/root 1092368 2024-04-19 15:24 ./usr/bin/bamrefinterval -rwxr-xr-x root/root 418744 2024-04-19 15:24 ./usr/bin/bamreheader -rwxr-xr-x root/root 418824 2024-04-19 15:24 ./usr/bin/bamreplacechecksums -rwxr-xr-x root/root 1025456 2024-04-19 15:24 ./usr/bin/bamreset -rwxr-xr-x root/root 889568 2024-04-19 15:24 ./usr/bin/bamscrapcount -rwxr-xr-x root/root 957624 2024-04-19 15:24 ./usr/bin/bamseqchksum -rwxr-xr-x root/root 2465240 2024-04-19 15:24 ./usr/bin/bamsormadup -rwxr-xr-x root/root 1707832 2024-04-19 15:24 ./usr/bin/bamsort -rwxr-xr-x root/root 957832 2024-04-19 15:24 ./usr/bin/bamsplit -rwxr-xr-x root/root 890280 2024-04-19 15:24 ./usr/bin/bamsplitdiv -rwxr-xr-x root/root 1296600 2024-04-19 15:24 ./usr/bin/bamstreamingmarkduplicates -rwxr-xr-x root/root 1295808 2024-04-19 15:24 ./usr/bin/bamtofastq -rwxr-xr-x root/root 1092920 2024-04-19 15:24 ./usr/bin/bamvalidate -rwxr-xr-x root/root 1025240 2024-04-19 15:24 ./usr/bin/bamzztoname -rwxr-xr-x root/root 137160 2024-04-19 15:24 ./usr/bin/fastaexplod -rwxr-xr-x root/root 408648 2024-04-19 15:24 ./usr/bin/fastqtobam -rwxr-xr-x root/root 821896 2024-04-19 15:24 ./usr/bin/fastqtobam2 -rwxr-xr-x root/root 276168 2024-04-19 15:24 ./usr/bin/normalisefasta -rwxr-xr-x root/root 278136 2024-04-19 15:24 ./usr/bin/populaterefcache drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/ drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/doc/biobambam2/ lrwxrwxrwx root/root 0 2024-04-19 15:24 ./usr/share/doc/biobambam2/README.gz -> README.md.gz -rw-r--r-- root/root 2465 2022-12-11 19:21 ./usr/share/doc/biobambam2/README.md.gz -rw-r--r-- root/root 278 2024-04-19 15:24 ./usr/share/doc/biobambam2/README.test -rw-r--r-- root/root 623 2024-04-19 15:24 ./usr/share/doc/biobambam2/README.test-data -rw-r--r-- root/root 1602 2024-04-19 15:24 ./usr/share/doc/biobambam2/changelog.Debian.gz -rw-r--r-- root/root 4468 2022-12-11 19:21 ./usr/share/doc/biobambam2/changelog.gz -rw-r--r-- root/root 3250 2024-04-19 15:24 ./usr/share/doc/biobambam2/copyright drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/doc/biobambam2/examples/ -rw-r--r-- root/root 623 2024-04-19 15:24 ./usr/share/doc/biobambam2/examples/README.test-data -rw-r--r-- root/root 659193 2024-04-19 15:24 ./usr/share/doc/biobambam2/examples/SRR11728627.bam -rw-r--r-- root/root 365817 2024-04-19 15:24 ./usr/share/doc/biobambam2/examples/SRR11728641.bam -rw-r--r-- root/root 1764 2024-04-19 15:24 ./usr/share/doc/biobambam2/run-unit-test drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/man/ drwxr-xr-x root/root 0 2024-04-19 15:24 ./usr/share/man/man1/ -rw-r--r-- root/root 1777 2024-04-19 15:24 ./usr/share/man/man1/bam12auxmerge.1.gz -rw-r--r-- root/root 1110 2024-04-19 15:24 ./usr/share/man/man1/bam12split.1.gz -rw-r--r-- root/root 1090 2024-04-19 15:24 ./usr/share/man/man1/bam12strip.1.gz -rw-r--r-- root/root 1220 2024-04-19 15:24 ./usr/share/man/man1/bamadapterclip.1.gz -rw-r--r-- root/root 2072 2024-04-19 15:24 ./usr/share/man/man1/bamadapterfind.1.gz -rw-r--r-- root/root 904 2024-04-19 15:24 ./usr/share/man/man1/bamalignfrac.1.gz -rw-r--r-- root/root 1575 2024-04-19 15:24 ./usr/share/man/man1/bamauxmerge.1.gz -rw-r--r-- root/root 1623 2024-04-19 15:24 ./usr/share/man/man1/bamauxmerge2.1.gz -rw-r--r-- root/root 1037 2024-04-19 15:24 ./usr/share/man/man1/bamauxsort.1.gz -rw-r--r-- root/root 823 2024-04-19 15:24 ./usr/share/man/man1/bambisect.1.gz -rw-r--r-- root/root 1296 2024-04-19 15:24 ./usr/share/man/man1/bamcat.1.gz -rw-r--r-- root/root 629 2024-04-19 15:24 ./usr/share/man/man1/bamchecksort.1.gz -rw-r--r-- root/root 942 2024-04-19 15:24 ./usr/share/man/man1/bamclipXT.1.gz -rw-r--r-- root/root 1089 2024-04-19 15:24 ./usr/share/man/man1/bamclipreinsert.1.gz -rw-r--r-- root/root 3440 2024-04-19 15:24 ./usr/share/man/man1/bamcollate2.1.gz -rw-r--r-- root/root 1099 2024-04-19 15:24 ./usr/share/man/man1/bamconsensus.1.gz -rw-r--r-- root/root 2755 2024-04-19 15:24 ./usr/share/man/man1/bamdownsamplerandom.1.gz -rw-r--r-- root/root 2278 2024-04-19 15:24 ./usr/share/man/man1/bamfeaturecount.1.gz -rw-r--r-- root/root 1477 2024-04-19 15:24 ./usr/share/man/man1/bamfillquery.1.gz -rw-r--r-- root/root 1151 2024-04-19 15:24 ./usr/share/man/man1/bamfilteraux.1.gz -rw-r--r-- root/root 1430 2024-04-19 15:24 ./usr/share/man/man1/bamfilterflags.1.gz -rw-r--r-- root/root 1196 2024-04-19 15:24 ./usr/share/man/man1/bamfilterheader.1.gz -rw-r--r-- root/root 1199 2024-04-19 15:24 ./usr/share/man/man1/bamfilterheader2.1.gz -rw-r--r-- root/root 1317 2024-04-19 15:24 ./usr/share/man/man1/bamfiltermc.1.gz -rw-r--r-- root/root 1093 2024-04-19 15:24 ./usr/share/man/man1/bamfilterrg.1.gz -rw-r--r-- root/root 1506 2024-04-19 15:24 ./usr/share/man/man1/bamfixmateinformation.1.gz -rw-r--r-- root/root 1625 2024-04-19 15:24 ./usr/share/man/man1/bamflagsplit.1.gz -rw-r--r-- root/root 568 2024-04-19 15:24 ./usr/share/man/man1/bamindex.1.gz -rw-r--r-- root/root 1955 2024-04-19 15:24 ./usr/share/man/man1/bamintervalcomment.1.gz -rw-r--r-- root/root 2552 2024-04-19 15:24 ./usr/share/man/man1/bammarkduplicates.1.gz -rw-r--r-- root/root 2672 2024-04-19 15:24 ./usr/share/man/man1/bammarkduplicates2.1.gz -rw-r--r-- root/root 2729 2024-04-19 15:24 ./usr/share/man/man1/bammarkduplicatesopt.1.gz -rw-r--r-- root/root 1508 2024-04-19 15:24 ./usr/share/man/man1/bammaskflags.1.gz -rw-r--r-- root/root 1625 2024-04-19 15:24 ./usr/share/man/man1/bammdnm.1.gz -rw-r--r-- root/root 1458 2024-04-19 15:24 ./usr/share/man/man1/bammerge.1.gz -rw-r--r-- root/root 1147 2024-04-19 15:24 ./usr/share/man/man1/bamrank.1.gz -rw-r--r-- root/root 1204 2024-04-19 15:24 ./usr/share/man/man1/bamranksort.1.gz -rw-r--r-- root/root 1507 2024-04-19 15:24 ./usr/share/man/man1/bamrecalculatecigar.1.gz -rw-r--r-- root/root 1065 2024-04-19 15:24 ./usr/share/man/man1/bamrecompress.1.gz -rw-r--r-- root/root 1732 2024-04-19 15:24 ./usr/share/man/man1/bamreset.1.gz -rw-r--r-- root/root 2194 2024-04-19 15:24 ./usr/share/man/man1/bamseqchksum.1.gz -rw-r--r-- root/root 2006 2024-04-19 15:24 ./usr/share/man/man1/bamsormadup.1.gz -rw-r--r-- root/root 3834 2024-04-19 15:24 ./usr/share/man/man1/bamsort.1.gz -rw-r--r-- root/root 951 2024-04-19 15:24 ./usr/share/man/man1/bamsplit.1.gz -rw-r--r-- root/root 982 2024-04-19 15:24 ./usr/share/man/man1/bamsplitdiv.1.gz -rw-r--r-- root/root 2096 2024-04-19 15:24 ./usr/share/man/man1/bamstreamingmarkduplicates.1.gz -rw-r--r-- root/root 1011 2024-04-19 15:24 ./usr/share/man/man1/bamtagconversion.1.gz -rw-r--r-- root/root 3269 2024-04-19 15:24 ./usr/share/man/man1/bamtofastq.1.gz -rw-r--r-- root/root 2033 2024-04-19 15:24 ./usr/share/man/man1/bamvalidate.1.gz -rw-r--r-- root/root 1088 2024-04-19 15:24 ./usr/share/man/man1/bamzztoname.1.gz -rw-r--r-- root/root 967 2024-04-19 15:24 ./usr/share/man/man1/fastaexplod.1.gz -rw-r--r-- root/root 2592 2024-04-19 15:24 ./usr/share/man/man1/fastqtobam.1.gz -rw-r--r-- root/root 671 2024-04-19 15:24 ./usr/share/man/man1/filtergtf.1.gz -rw-r--r-- root/root 1076 2024-04-19 15:24 ./usr/share/man/man1/normalisefasta.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1358 B] Get:5 copy:/<>/apt_archive ./ Packages [1443 B] Fetched 3416 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: ca-certificates diffstat iso-codes libaliased-perl libapt-pkg-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat iso-codes libaliased-perl libapt-pkg-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 123 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After this operation, 46.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:4 http://localhost:3142/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:5 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.66-1 [34.0 kB] Get:6 http://localhost:3142/debian sid/main amd64 iso-codes all 4.16.0-1 [2936 kB] Get:7 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:8 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b5 [66.9 kB] Get:9 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b1 [10.6 kB] Get:10 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:11 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.009-1 [15.9 kB] Get:12 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b3 [22.4 kB] Get:13 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:14 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:15 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:16 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:17 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.64-1 [44.7 kB] Get:18 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:19 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b3 [121 kB] Get:20 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:22 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get:23 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.82-1 [98.9 kB] Get:24 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.64-1 [217 kB] Get:25 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:26 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:27 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b3 [36.2 kB] Get:28 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1+b2 [13.7 kB] Get:29 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:30 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-3 [24.0 kB] Get:31 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:32 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:33 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:34 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:35 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.37-1+b2 [128 kB] Get:36 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:37 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:38 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:39 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:40 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:41 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b3 [32.5 kB] Get:42 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:43 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:44 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:45 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:46 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b3 [98.1 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:48 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:49 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.84-1 [23.9 kB] Get:50 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b3 [29.3 kB] Get:51 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:52 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:53 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:54 http://localhost:3142/debian sid/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:55 http://localhost:3142/debian sid/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:56 http://localhost:3142/debian sid/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:57 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:58 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:59 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:60 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:61 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:62 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:63 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:64 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:65 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:66 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:69 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:70 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get:71 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:72 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:73 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:74 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:75 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.77-1 [183 kB] Get:76 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:77 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:78 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:79 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:80 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:81 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:82 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:83 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.15~pre1-1 [38.5 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2+b1 [54.8 kB] Get:86 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:87 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:88 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:89 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:90 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:91 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:92 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:93 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b5 [143 kB] Get:94 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:95 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get:96 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get:97 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:98 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:99 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get:100 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get:101 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get:102 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:103 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get:104 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get:105 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:106 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.41-1 [60.0 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-2 [26.9 kB] Get:108 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get:109 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get:110 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get:111 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get:112 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:113 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get:114 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get:115 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:116 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get:117 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1+b1 [35.0 kB] Get:118 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-1 [63.9 kB] Get:119 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:120 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:121 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:122 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:123 http://localhost:3142/debian sid/main amd64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.0 MB in 0s (95.4 MB/s) Selecting previously unselected package netbase. (Reading database ... 20980 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../003-diffstat_1.66-1_amd64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../004-iso-codes_4.16.0-1_all.deb ... Unpacking iso-codes (4.16.0-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../005-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libapt-pkg-perl. 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Selecting previously unselected package libcpanel-json-xs-perl:amd64. Preparing to unpack .../033-libcpanel-json-xs-perl_4.37-1+b2_amd64.deb ... Unpacking libcpanel-json-xs-perl:amd64 (4.37-1+b2) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../034-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../035-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../036-libiterator-perl_0.03+ds1-2_all.deb ... Unpacking libiterator-perl (0.03+ds1-2) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../037-libiterator-util-perl_0.02+ds1-2_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-2) ... Selecting previously unselected package libdata-dpath-perl. 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Unpacking libnet-netmask-perl (2.0002-2) ... Selecting previously unselected package libnetaddr-ip-perl. Preparing to unpack .../044-libnetaddr-ip-perl_4.079+dfsg-2+b3_amd64.deb ... Unpacking libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Selecting previously unselected package libdata-validate-ip-perl. Preparing to unpack .../045-libdata-validate-ip-perl_0.31-1_all.deb ... Unpacking libdata-validate-ip-perl (0.31-1) ... Selecting previously unselected package libdata-validate-uri-perl. Preparing to unpack .../046-libdata-validate-uri-perl_0.07-3_all.deb ... Unpacking libdata-validate-uri-perl (0.07-3) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../047-libdevel-size-perl_0.84-1_amd64.deb ... Unpacking libdevel-size-perl (0.84-1) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../048-libemail-address-xs-perl_1.05-1+b3_amd64.deb ... Unpacking libemail-address-xs-perl (1.05-1+b3) ... 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Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1+b2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1) ... Setting up unzip (6.0-28) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.89+ds-1+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:amd64 (2.10-2+b1) ... Setting up libtime-moment-perl (0.44-2+b3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.41-1) ... 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Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.2.1-3) ... Setting up libtext-levenshteinxs-perl (0.03-5+b3) ... Setting up libperlio-gzip-perl (0.20-1+b3) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:amd64 (2.2.7-2+b1) ... Setting up liburi-perl (5.28-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 4264268 Build-Time: 4095 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 15 Job: biobambam2_2.0.185+ds-2 Lintian: pass Machine Architecture: amd64 Package: biobambam2 Package-Time: 4121 Source-Version: 2.0.185+ds-2 Space: 4264268 Status: successful Version: 2.0.185+ds-2 -------------------------------------------------------------------------------- Finished at 2024-04-28T15:05:08Z Build needed 01:08:41, 4264268k disk space