sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | biobambam2 2.0.95-1 (armhf) Tue, 06 Aug 2019 12:22:35 +0000 | +==============================================================================+ Package: biobambam2 Version: 2.0.95-1 Source Version: 2.0.95-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-318dd903-9792-460f-bbb3-7c7e2192a61e' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-06-0817.30.pdiff [22.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-06-0817.30.pdiff [8472 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-06-0817.30.pdiff [22.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-06-0817.30.pdiff [8472 B] Get:6 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8143 kB] Fetched 8379 kB in 2s (4367 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'biobambam2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biobambam2.git Please use: git clone https://salsa.debian.org/med-team/biobambam2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 834 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.95-1 (dsc) [2000 B] Get:2 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.95-1 (tar) [829 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main biobambam2 2.0.95-1 (diff) [2728 B] Fetched 834 kB in 0s (36.4 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/biobambam2-7ItANi/biobambam2-2.0.95' with '<>' I: NOTICE: Log filtering will replace 'build/biobambam2-7ItANi' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-xmCcLz/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-xmCcLz/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xmCcLz/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-xmCcLz/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xmCcLz/apt_archive ./ Sources [363 B] Get:5 copy:/<>/resolver-xmCcLz/apt_archive ./ Packages [452 B] Fetched 1772 B in 0s (92.7 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base gcc-9-cross-base gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-armhf-cross libgcc1-dbg-armhf-cross libgomp1-dbg-armhf-cross libitm1-dbg-armhf-cross libatomic1-dbg-armhf-cross libasan5-dbg-armhf-cross liblsan0-dbg-armhf-cross libtsan0-dbg-armhf-cross libubsan1-dbg-armhf-cross libmpx2-dbg-armhf-cross libquadmath0-dbg-armhf-cross manpages-dev autoconf automake libtool flex bison gdb-arm-linux-gnueabihf gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base gcc-9-cross-base gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross sbuild-build-depends-core-dummy:armhf sensible-utils ucf 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 42.3 MB of archives. After this operation, 154 MB of additional disk space will be used. Get:1 copy:/<>/resolver-xmCcLz/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.32.51.20190727-1 [2914 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf-base amd64 8.3.0-19cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabihf amd64 8.3.0-19cross1 [6549 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-19cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.1.0-8cross1 [185 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.28-10cross3 [1172 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:9.1.0-8cross1 [37.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 9.1.0-8cross1 [73.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 9.1.0-8cross1 [6692 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 9.1.0-8cross1 [363 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 9.1.0-8cross1 [392 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 9.1.0-8cross1 [112 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armhf-cross all 8.3.0-19cross1 [614 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf amd64 8.3.0-19cross1 [6979 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:8.3.0-1 [1456 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 4.19.37-5cross3 [1255 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.28-10cross3 [2150 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armhf-cross all 8.3.0-19cross1 [1561 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabihf amd64 8.3.0-19cross1 [7130 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:8.3.0-1 [1180 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.3 MB in 1s (57.8 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up gcc-8-arm-linux-gnueabihf-base:amd64 (8.3.0-19cross1) ... Setting up linux-libc-dev-armhf-cross (4.19.37-5cross3) ... Setting up gcc-9-cross-base (9.1.0-8cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up binutils-arm-linux-gnueabihf (2.32.51.20190727-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up cpp-8-arm-linux-gnueabihf (8.3.0-19cross1) ... Setting up libgomp1-armhf-cross (9.1.0-8cross1) ... Setting up libc6-dev-armhf-cross (2.28-10cross3) ... Setting up libatomic1-armhf-cross (9.1.0-8cross1) ... Setting up libgcc1-armhf-cross (1:9.1.0-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up cpp-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armhf-cross (9.1.0-8cross1) ... Setting up libstdc++6-armhf-cross (9.1.0-8cross1) ... Setting up libubsan1-armhf-cross (9.1.0-8cross1) ... Setting up libgcc-8-dev-armhf-cross (8.3.0-19cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-8-dev-armhf-cross (8.3.0-19cross1) ... Setting up gcc-8-arm-linux-gnueabihf (8.3.0-19cross1) ... Setting up gcc-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up g++-8-arm-linux-gnueabihf (8.3.0-19cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armhf (12.6) ... Setting up sbuild-build-depends-core-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-xmCcLz/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-xmCcLz/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xmCcLz/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-xmCcLz/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xmCcLz/apt_archive ./ Sources [485 B] Get:5 copy:/<>/resolver-xmCcLz/apt_archive ./ Packages [571 B] Fetched 2019 B in 0s (111 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:armhf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-xmCcLz/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:armhf. (Reading database ... 15015 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), pkg-config, libmaus2-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), pkg-config, libmaus2-dev dpkg-deb: building package 'sbuild-build-depends-biobambam2-dummy' in '/<>/resolver-xmCcLz/apt_archive/sbuild-build-depends-biobambam2-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-biobambam2-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-xmCcLz/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xmCcLz/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-xmCcLz/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xmCcLz/apt_archive ./ Sources [657 B] Get:5 copy:/<>/resolver-xmCcLz/apt_archive ./ Packages [734 B] Fetched 2354 B in 0s (123 kB/s) Reading package lists... Reading package lists... Install biobambam2 build dependencies (apt-based resolver) ---------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armhf gcc-9-base:armhf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libatomic1:armhf libbsd0 libc6:armhf libc6-dev:armhf libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:armhf libgcc1:armhf libglib2.0-0 libgomp1:armhf libmaus2-2:armhf libmaus2-dev:armhf libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:armhf libstdc++6:armhf libsub-override-perl libtool libubsan1:armhf libuchardet0 linux-libc-dev:armhf m4 man-db pkg-config po-debconf zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf libstdc++-8-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armhf gcc-9-base:armhf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libatomic1:armhf libbsd0 libc6:armhf libc6-dev:armhf libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:armhf libgcc1:armhf libglib2.0-0 libgomp1:armhf libmaus2-2:armhf libmaus2-dev:armhf libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:armhf libstdc++6:armhf libsub-override-perl libtool libubsan1:armhf libuchardet0 linux-libc-dev:armhf m4 man-db pkg-config po-debconf sbuild-build-depends-biobambam2-dummy:armhf zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 23.4 MB of archives. After this operation, 111 MB of additional disk space will be used. Get:1 copy:/<>/resolver-xmCcLz/apt_archive ./ sbuild-build-depends-biobambam2-dummy 0.invalid.0 [892 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.6.1-1 [1295 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.1.0-10 [190 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.4.0-1 [21.9 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.4.0-1 [14.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12.20190723-1 [80.6 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-1 [1294 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190713-2 [102 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.2.3 [1026 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main armhf gcc-8-base armhf 8.3.0-19 [192 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main armhf libgcc1 armhf 1:9.1.0-10 [37.3 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.28-10 [2390 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.1.0-10 [370 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 9.1.0-10 [6880 B] Get:36 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 4.19.37-6 [1168 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.28-10 [2149 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 9.1.0-10 [75.1 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 9.1.0-10 [431 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 9.1.0-10 [113 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-8-dev armhf 8.3.0-19 [612 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g armhf 1:1.2.11.dfsg-1 [87.9 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main armhf libmaus2-2 armhf 2.0.611-1 [1122 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main armhf libmaus2-dev armhf 2.0.611-1 [2900 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-8-dev armhf 8.3.0-19 [1561 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.4 MB in 2s (10.4 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15015 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.6.1-1_amd64.deb ... Unpacking man-db (2.8.6.1-1) ... Selecting previously unselected package gcc-9-base:armhf. Preparing to unpack .../06-gcc-9-base_9.1.0-10_armhf.deb ... Unpacking gcc-9-base:armhf (9.1.0-10) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../08-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../10-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../11-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../12-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../13-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../14-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../15-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../16-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.4.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.4.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../19-dh-strip-nondeterminism_1.4.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.4.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../20-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../21-dwz_0.12.20190723-1_amd64.deb ... Unpacking dwz (0.12.20190723-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../22-libglib2.0-0_2.60.6-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.60.6-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../23-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../24-libncurses6_6.1+20190713-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190713-2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_12.2.3_all.deb ... Unpacking debhelper (12.2.3) ... Selecting previously unselected package gcc-8-base:armhf. Preparing to unpack .../29-gcc-8-base_8.3.0-19_armhf.deb ... Unpacking gcc-8-base:armhf (8.3.0-19) ... Selecting previously unselected package libgcc1:armhf. Preparing to unpack .../30-libgcc1_1%3a9.1.0-10_armhf.deb ... Unpacking libgcc1:armhf (1:9.1.0-10) ... Selecting previously unselected package libc6:armhf. 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Preparing to unpack .../43-libmaus2-dev_2.0.611-1_armhf.deb ... Unpacking libmaus2-dev:armhf (2.0.611-1) ... Selecting previously unselected package libstdc++-8-dev:armhf. Preparing to unpack .../44-libstdc++-8-dev_8.3.0-19_armhf.deb ... Unpacking libstdc++-8-dev:armhf (8.3.0-19) ... Selecting previously unselected package pkg-config. Preparing to unpack .../45-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package sbuild-build-depends-biobambam2-dummy:armhf. Preparing to unpack .../46-sbuild-build-depends-biobambam2-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-biobambam2-dummy:armhf (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.60.6-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:armhf (4.19.37-6) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20190713-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:armhf (8.3.0-19) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up gcc-9-base:armhf (9.1.0-10) ... Setting up libfile-stripnondeterminism-perl (1.4.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190723-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.6.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:armhf (2.28-10) ... Setting up libc6-dev:armhf (2.28-10) ... Setting up libgcc1:armhf (1:9.1.0-10) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-1) ... Setting up libgomp1:armhf (9.1.0-10) ... Setting up dh-autoreconf (19) ... Setting up libasan5:armhf (9.1.0-10) ... Setting up libatomic1:armhf (9.1.0-10) ... Setting up dh-strip-nondeterminism (1.4.0-1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Setting up libstdc++6:armhf (9.1.0-10) ... Setting up libmaus2-2:armhf (2.0.611-1) ... Setting up debhelper (12.2.3) ... Setting up libubsan1:armhf (9.1.0-10) ... Setting up libmaus2-dev:armhf (2.0.611-1) ... Setting up libgcc-8-dev:armhf (8.3.0-19) ... Setting up libstdc++-8-dev:armhf (8.3.0-19) ... Setting up sbuild-build-depends-biobambam2-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190727-1 dpkg-dev_1.19.7 g++-8_8.3.0-19 gcc-8_8.3.0-19 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-armhf-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-armhf-cross_9.1.0-8cross1 linux-libc-dev_4.19.37-6 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190727-1 binutils-arm-linux-gnueabihf_2.32.51.20190727-1 binutils-common_2.32.51.20190727-1 binutils-x86-64-linux-gnu_2.32.51.20190727-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.6 bzip2_1.0.6-9.2 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-19 cpp-8-arm-linux-gnueabihf_8.3.0-19cross1 cpp-arm-linux-gnueabihf_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-armhf_12.6 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.2.3 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.4.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.12.20190723-1 e2fsprogs_1.45.3-3 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.6.0+git+20190510-2 g++_4:8.3.0-1 g++-8_8.3.0-19 g++-8-arm-linux-gnueabihf_8.3.0-19cross1 g++-arm-linux-gnueabihf_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-19 gcc-8-arm-linux-gnueabihf_8.3.0-19cross1 gcc-8-arm-linux-gnueabihf-base_8.3.0-19cross1 gcc-8-base_8.3.0-19 gcc-8-cross-base_8.3.0-19cross1 gcc-9-base_9.1.0-10 gcc-9-cross-base_9.1.0-8cross1 gcc-arm-linux-gnueabihf_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_9.1.0-10 libasan5-armhf-cross_9.1.0-8cross1 libatomic1_9.1.0-10 libatomic1-armhf-cross_9.1.0-8cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190727-1 libblkid1_2.34-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-armhf-cross_2.28-10cross3 libc6-dev_2.28-10 libc6-dev-armhf-cross_2.28-10cross3 libcap-ng0_0.7.9-2 libcc1-0_9.1.0-10 libcom-err2_1.45.3-3 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.3-3 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.4.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-19 libgcc-8-dev-armhf-cross_8.3.0-19cross1 libgcc1_1:9.1.0-10 libgcc1-armhf-cross_1:9.1.0-8cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4+b1 libgdbm6_1.18.1-4+b1 libglib2.0-0_2.60.6-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-3 libgomp1_9.1.0-10 libgomp1-armhf-cross_9.1.0-8cross1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.1.0-10 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.1.0-10 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmaus2-2_2.0.611-1 libmaus2-dev_2.0.611-1 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-19 libncurses6_6.1+20190713-2 libncursesw6_6.1+20190713-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_9.1.0-10 libseccomp2_2.4.1-2 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.3-3 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-armhf-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-armhf-cross_9.1.0-8cross1 libsub-override-perl_0.09-2 libsystemd0_241-7 libtasn1-6_4.14-2 libtinfo6_6.1+20190713-2 libtool_2.4.6-10 libtsan0_9.1.0-10 libubsan1_9.1.0-10 libubsan1-armhf-cross_9.1.0-8cross1 libuchardet0_0.0.6-3 libudev1_241-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-6 linux-libc-dev-armhf-cross_4.19.37-5cross3 login_1:4.7-2 logsave_1.45.3-3 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6.1-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190713-2 ncurses-bin_6.1+20190713-2 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-biobambam2-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.95-4 tar_1.30+dfsg-6 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Apr 13 05:43:07 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./biobambam2_2.0.95-1.dsc dpkg-source: info: extracting biobambam2 in /<> dpkg-source: info: unpacking biobambam2_2.0.95.orig.tar.bz2 dpkg-source: info: unpacking biobambam2_2.0.95-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-318dd903-9792-460f-bbb3-7c7e2192a61e SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package biobambam2 dpkg-buildpackage: info: source version 2.0.95-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:3: installing './compile' configure.ac:5: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.armhf checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabihf checking target system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed checking whether arm-linux-gnueabihf-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by arm-linux-gnueabihf-gcc... /usr/arm-linux-gnueabihf/bin/ld checking if the linker (/usr/arm-linux-gnueabihf/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/arm-linux-gnueabihf-nm -B checking the name lister (/usr/bin/arm-linux-gnueabihf-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/arm-linux-gnueabihf/bin/ld option to reload object files... -r checking for arm-linux-gnueabihf-objdump... arm-linux-gnueabihf-objdump checking how to recognize dependent libraries... pass_all checking for arm-linux-gnueabihf-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for arm-linux-gnueabihf-ar... arm-linux-gnueabihf-ar checking for archiver @FILE support... @ checking for arm-linux-gnueabihf-strip... arm-linux-gnueabihf-strip checking for arm-linux-gnueabihf-ranlib... arm-linux-gnueabihf-ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/arm-linux-gnueabihf-nm -B output from arm-linux-gnueabihf-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for arm-linux-gnueabihf-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if arm-linux-gnueabihf-gcc supports -fno-rtti -fno-exceptions... no checking for arm-linux-gnueabihf-gcc option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabihf-gcc PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabihf-gcc static flag -static works... yes checking if arm-linux-gnueabihf-gcc supports -c -o file.o... yes checking if arm-linux-gnueabihf-gcc supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabihf-gcc linker (/usr/arm-linux-gnueabihf/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabihf-strip... (cached) arm-linux-gnueabihf-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of arm-linux-gnueabihf-gcc... none checking whether we are cross compiling... yes checking for arm-linux-gnueabihf-gcc... (cached) arm-linux-gnueabihf-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether arm-linux-gnueabihf-gcc accepts -g... (cached) yes checking for arm-linux-gnueabihf-gcc option to accept ISO C89... (cached) none needed checking whether arm-linux-gnueabihf-gcc understands -c and -o together... (cached) yes checking for arm-linux-gnueabihf-g++... arm-linux-gnueabihf-g++ checking whether we are using the GNU C++ compiler... yes checking whether arm-linux-gnueabihf-g++ accepts -g... yes checking how to run the C++ preprocessor... arm-linux-gnueabihf-g++ -E checking for ld used by arm-linux-gnueabihf-g++... /usr/arm-linux-gnueabihf/bin/ld checking if the linker (/usr/arm-linux-gnueabihf/bin/ld) is GNU ld... yes checking whether the arm-linux-gnueabihf-g++ linker (/usr/arm-linux-gnueabihf/bin/ld) supports shared libraries... yes checking for arm-linux-gnueabihf-g++ option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabihf-g++ PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabihf-g++ static flag -static works... yes checking if arm-linux-gnueabihf-g++ supports -c -o file.o... yes checking if arm-linux-gnueabihf-g++ supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabihf-g++ linker (/usr/arm-linux-gnueabihf/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of arm-linux-gnueabihf-g++... none configure: Adding optimisation options to C compiler arm-linux-gnueabihf-gcc flags, full list now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security configure: Adding optimisation options to C++ compiler arm-linux-gnueabihf-g++ flags, full list now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security checking for arm-linux-gnueabihf-pkg-config... /usr/bin/arm-linux-gnueabihf-pkg-config checking pkg-config is at least version 0.9.0... yes checking for ANSI C header files... (cached) yes checking for libmaus2... yes checking for libmaus2digests... yes checking for libmaus2seqchksumsfactory... yes checking whether we can compile a program using libmaus2... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread_mutexattr_settype supports PTHREAD_MUTEX_RECURSIVE... yes checking whether libmaus2 has support for io_lib... no checking whether libmaus2 has support for iRODS... no checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for xerces_c... no configure: Using flags -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C compiler arm-linux-gnueabihf-gcc configure: Using flags -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security for C++ compiler arm-linux-gnueabihf-g++ checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/biobambam2/BamBamConfig.hpp config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtofastq-bamtofastq.o `test -f 'programs/bamtofastq.cpp' || echo './'`programs/bamtofastq.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamtofastq.cpp:29: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator' {aka '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamtofastq.cpp:30: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamtofastq.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamtofastq.cpp:29: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtofastq.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtofastq-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtofastq programs/bamtofastq-bamtofastq.o biobambam2/bamtofastq-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicates-bammarkduplicates.o `test -f 'programs/bammarkduplicates.cpp' || echo './'`programs/bammarkduplicates.cpp In file included from programs/bammarkduplicates.cpp:35: /usr/include/libmaus2/bambam/DupMarkBase.hpp: In static member function 'static uint64_t libmaus2::bambam::DupMarkBase::markDuplicateFrags(iterator, iterator, libmaus2::bambam::DupSetCallback&) [with iterator = __gnu_cxx::__normal_iterator >; projector = libmaus2::bambam::DupMarkBase::MarkDuplicateProjectorIdentity]': /usr/include/libmaus2/bambam/DupMarkBase.hpp:367:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 static uint64_t markDuplicateFrags(iterator const lfrags_a, iterator const lfrags_e, ::libmaus2::bambam::DupSetCallback & DSC) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/bambam/DupMarkBase.hpp:367:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadEnds&}; _Tp = libmaus2::bambam::ReadEnds; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentInputCallbackBam.hpp:22, from programs/bammarkduplicates.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::SortedFragDecoder::getNext(std::vector&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:63, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = libmaus2::bambam::Chromosome*; bool _TrivialValueTypes = false]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = libmaus2::bambam::ReadGroup*; bool _TrivialValueTypes = false]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfInflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfInflateDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator' {aka '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual std::vector > libmaus2::bambam::BamRange::getChunks(const libmaus2::bambam::BamIndex&) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::ReadEnds; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__make_heap(__first, __middle, __comp); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicates.cpp:35: /usr/include/libmaus2/bambam/DupMarkBase.hpp: In static member function 'static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairsOpt(iterator, iterator, libmaus2::bambam::DupSetCallback&, unsigned int, libmaus2::bambam::DupMarkBase::MarkOptical*) [with iterator = __gnu_cxx::__normal_iterator >; projector = libmaus2::bambam::DupMarkBase::MarkDuplicateProjectorIdentity; bool bmarkopt = false]': /usr/include/libmaus2/bambam/DupMarkBase.hpp:79:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 static uint64_t markDuplicatePairsOpt( ^~~~~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/bambam/DupMarkBase.hpp:79:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentInputCallbackBam.hpp:22, from programs/bammarkduplicates.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::BamMergeTemplate(const std::vector >&, bool) [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicates.cpp:35: /usr/include/libmaus2/bambam/DupMarkBase.hpp: In function 'int markDuplicates(const libmaus2::util::ArgInfo&)': /usr/include/libmaus2/bambam/DupMarkBase.hpp:260:74: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicatePairsOpt(lfrags_a,lfrags_e,DSC,optminpixeldif,0 /* mark opt */); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicates.cpp:35: /usr/include/libmaus2/bambam/DupMarkBase.hpp:260:74: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicatePairsOpt(lfrags_a,lfrags_e,DSC,optminpixeldif,0 /* mark opt */); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicates.cpp:35: /usr/include/libmaus2/bambam/DupMarkBase.hpp:457:122: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicateFrags::const_iterator,MarkDuplicateProjectorIdentity>(lfrags.begin(),lfrags.end(),DSC); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicates.cpp:35: /usr/include/libmaus2/bambam/DupMarkBase.hpp:457:122: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicateFrags::const_iterator,MarkDuplicateProjectorIdentity>(lfrags.begin(),lfrags.end(),DSC); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicates programs/bammarkduplicates-bammarkduplicates.o biobambam2/bammarkduplicates-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsort-bamsort.o `test -f 'programs/bamsort.cpp' || echo './'`programs/bamsort.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OpticalExternalInfoElement&}; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OpticalExternalInfoElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastAIndexEntry}; _Tp = libmaus2::fastx::FastAIndexEntry; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/unordered_map:46, from /usr/include/libmaus2/util/unordered_map.hpp:25, from /usr/include/libmaus2/bambam/Chromosome.hpp:30, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:24, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = long long unsigned int; _Value = std::pair; _Alloc = std::allocator >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to; _H1 = std::hash; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]': /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h:1872:5: note: parameter passing for argument of type 'std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator' {aka 'std::__detail::_Node_const_iterator, false, false>'} changed in GCC 7.1 _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _H1, _H2, _Hash, _RehashPolicy, _Traits>:: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/unordered_map:46, from /usr/include/libmaus2/util/unordered_map.hpp:25, from /usr/include/libmaus2/bambam/Chromosome.hpp:30, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:24, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h: In member function 'void libmaus2::lru::SparseLRUFileBunch::remove(uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type 'std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator' {aka 'std::__detail::_Node_const_iterator, false, false>'} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::BamStreamingMarkDuplicatesSupport::FragmentHashKeyType&}; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::FragmentHashKeyType; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::FragmentHashKeyType; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::FragmentHashKeyType; _Sequence = std::vector; _Compare = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::FragmentHashKeyHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::BamStreamingMarkDuplicatesSupport::PairHashKeyType&}; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::PairHashKeyType; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::PairHashKeyType; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/unordered_map:46, from /usr/include/libmaus2/util/unordered_map.hpp:25, from /usr/include/libmaus2/bambam/Chromosome.hpp:30, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:24, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h: In member function 'void libmaus2::lru::SparseLRU::update(uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type 'std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator' {aka 'std::__detail::_Node_const_iterator, false, false>'} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'libmaus2::aio::InputOutputStream& libmaus2::lru::SparseLRUFileBunch::operator[](uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/unordered_map:46, from /usr/include/libmaus2/util/unordered_map.hpp:25, from /usr/include/libmaus2/bambam/Chromosome.hpp:30, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:24, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type 'std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator' {aka 'std::__detail::_Node_const_iterator, false, false>'} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::PairHashKeyType; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::FragmentHashKeyType; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >::HeapOrderAdapter>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::fastx::FastAIndex::FastAIndex(std::istream&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'bool libmaus2::sorting::MergingReadBack<_data_type, _order_type>::getNext(libmaus2::sorting::MergingReadBack<_data_type, _order_type>::data_type&) [with _data_type = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OpticalExternalInfoElement; _order_type = std::less]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::lz::SimpleCompressedConcatInputStreamFragment}; _Tp = libmaus2::lz::SimpleCompressedConcatInputStreamFragment; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::lz::SimpleCompressedConcatInputStreamFragment}; _Tp = libmaus2::lz::SimpleCompressedConcatInputStreamFragment; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::sorting::MergingReadBack<_data_type, _order_type>::MergingReadBack(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OpticalExternalInfoElement; _order_type = std::less]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function 'static std::vector libmaus2::sorting::MergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OpticalExternalInfoElement; _order_type = std::less]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::SimpleCompressedConcatInputStreamFragment&}; _Tp = libmaus2::lz::SimpleCompressedConcatInputStreamFragment; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::lz::SimpleCompressedConcatInputStream<_stream_type>::SimpleCompressedConcatInputStream(const std::vector >&, libmaus2::lz::DecompressorObjectFactory&) [with _stream_type = libmaus2::aio::InputStream]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OutputQueue<_writer_type>::flushTempFile(uint64_t) [with _writer_type = libmaus2::bambam::BamBlockWriterBase]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OutputQueue<_writer_type>::push(libmaus2::bambam::BamAlignment*) [with _writer_type = libmaus2::bambam::BamBlockWriterBase]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamStreamingMarkDuplicates::addAlignment(libmaus2::bambam::BamAlignment&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamsort.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function 'static iterator libmaus2::sorting::ParallelStableSort::parallelSort(iterator, iterator, iterator, iterator, order_type, uint64_t, bool) [with iterator = long long unsigned int*; order_type = libmaus2::bambam::BamAlignmentPosComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel >}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel >; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >, std::allocator > > >::iterator' {aka '__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamEntryContainer.hpp:35, from programs/bamsort.cpp:34: /usr/include/libmaus2/sorting/ParallelStableSort.hpp: In static member function 'static iterator libmaus2::sorting::ParallelStableSort::parallelSort(iterator, iterator, iterator, iterator, order_type, uint64_t, bool) [with iterator = long long unsigned int*; order_type = libmaus2::bambam::BamAlignmentHashComparator<>]': /usr/include/libmaus2/sorting/ParallelStableSort.hpp:572:20: note: parameter passing for argument of type 'const libmaus2::bambam::BamAlignmentHashComparator<>' changed in GCC 7.1 static iterator parallelSort( ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from programs/bamsort.cpp:34: /usr/include/libmaus2/bambam/BamEntryContainer.hpp: In member function 'void libmaus2::bambam::BamEntryContainer<_comparator_type>::flush() [with _comparator_type = libmaus2::bambam::BamAlignmentHashComparator<>]': /usr/include/libmaus2/bambam/BamEntryContainer.hpp:236:58: note: parameter passing for argument of type 'libmaus2::bambam::BamEntryContainer >::comparator_type' {aka 'libmaus2::bambam::BamAlignmentHashComparator<>'} changed in GCC 7.1 libmaus2::sorting::ParallelStableSort::parallelSort( ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ pp,B.end(), ~~~~~~~~~~~ pp-numel,pp, ~~~~~~~~~~~~ BAPC, ~~~~~ parallel ~~~~~~~~ ); ~ /usr/include/libmaus2/bambam/BamEntryContainer.hpp: In member function 'void libmaus2::bambam::BamEntryContainer<_comparator_type>::createOutput(writer_type&, libmaus2::bambam::MdNmRecalculation*, int) [with writer_type = libmaus2::bambam::BamEntryContainer >::BamWriterWrapper; bool computemdnm = false; _comparator_type = libmaus2::bambam::BamAlignmentHashComparator<>]': /usr/include/libmaus2/bambam/BamEntryContainer.hpp:554:58: note: parameter passing for argument of type 'libmaus2::bambam::BamEntryContainer >::comparator_type' {aka 'libmaus2::bambam::BamAlignmentHashComparator<>'} changed in GCC 7.1 libmaus2::sorting::ParallelStableSort::parallelSort( ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ pp,B.end(), ~~~~~~~~~~~ pp-numel,pp, ~~~~~~~~~~~~ BAPC, ~~~~~ parallel ~~~~~~~~ ); ~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function 'static iterator libmaus2::sorting::ParallelStableSort::parallelSort(iterator, iterator, iterator, iterator, order_type, uint64_t, bool) [with iterator = long long unsigned int*; order_type = libmaus2::bambam::BamAlignmentTagComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function 'static iterator libmaus2::sorting::ParallelStableSort::parallelSort(iterator, iterator, iterator, iterator, order_type, uint64_t, bool) [with iterator = long long unsigned int*; order_type = libmaus2::bambam::BamAlignmentNameHIComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function 'static iterator libmaus2::sorting::ParallelStableSort::parallelSort(iterator, iterator, iterator, iterator, order_type, uint64_t, bool) [with iterator = long long unsigned int*; order_type = libmaus2::bambam::BamAlignmentNameComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamStreamingMarkDuplicates::flush()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsort programs/bamsort-bamsort.o biobambam2/bamsort-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamcollate-bamcollate.o `test -f 'programs/bamcollate.cpp' || echo './'`programs/bamcollate.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::MergeQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::MergeQueueElement}; _Tp = libmaus2::bambam::MergeQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::MergeQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::CollatingBamDecoder::fillOutputList()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamcollate.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcollate-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamcollate programs/bamcollate-bamcollate.o biobambam2/bamcollate-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamcollate programs/bamcollate-bamcollate.o biobambam2/bamcollate-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammaskflags-bammaskflags.o `test -f 'programs/bammaskflags.cpp' || echo './'`programs/bammaskflags.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bammaskflags.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammaskflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammaskflags programs/bammaskflags-bammaskflags.o biobambam2/bammaskflags-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrecompress-bamrecompress.o `test -f 'programs/bamrecompress.cpp' || echo './'`programs/bamrecompress.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfInflateDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamrecompress.cpp:20: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrecompress-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrecompress programs/bamrecompress-bamrecompress.o biobambam2/bamrecompress-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterfind-bamadapterfind.o `test -f 'programs/bamadapterfind.cpp' || echo './'`programs/bamadapterfind.cpp programs/bamadapterfind.cpp: In destructor 'LimitedLockedHeap::ScopeLimitedMutexLock::~ScopeLimitedMutexLock()': programs/bamadapterfind.cpp:189:11: warning: throw will always call terminate() [-Wterminate] throw lme; ^~~ programs/bamadapterfind.cpp:189:11: note: in C++11 destructors default to noexcept In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:23, from programs/bamadapterfind.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::AdapterFilter::AdapterFragment}; _Tp = libmaus2::bambam::AdapterFilter::AdapterFragment; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::AdapterOffsetStrand}; _Tp = libmaus2::bambam::AdapterOffsetStrand; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'void libmaus2::util::Histogram::operator()(uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamadapterfind.cpp:29: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::AdapterFilter::AdapterFragment; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::AdapterOffsetStrand; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::AdapterOffsetStrand; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual std::vector > libmaus2::bambam::BamRange::getChunks(const libmaus2::bambam::BamIndex&) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:23, from programs/bamadapterfind.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/include/libmaus2/fastx/QReorder.hpp: In constructor 'libmaus2::fastx::QReorder4Set<_k, _value_type>::QReorder4Set(unsigned int, iterator, iterator, unsigned int) [with iterator = __gnu_cxx::__normal_iterator >; unsigned int _k = 3; _value_type = long long unsigned int]': /usr/include/libmaus2/fastx/QReorder.hpp:870:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 QReorder4Set(unsigned int l, iterator ita, iterator ite, unsigned int const rlookupbits) ^~~~~~~~~~~~ /usr/include/libmaus2/fastx/QReorder.hpp:870:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::AdapterFilter::AdapterFilter(std::istream&, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from programs/bamadapterfind.cpp:26: /usr/include/libmaus2/bambam/AdapterFilter.hpp:257:88: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 new libmaus2::fastx::QReorder4Set(seedlength,W.begin(),W.end(),16) ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterfind.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'bool libmaus2::bambam::AdapterFilter::searchAdapters(const uint8_t*, uint64_t, unsigned int, libmaus2::util::PushBuffer&, int64_t, double, double, libmaus2::fastx::AutoArrayWordPutObject&, int) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterfind.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterfind-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamadapterfind programs/bamadapterfind-bamadapterfind.o biobambam2/bamadapterfind-Licensing.o biobambam2/bamadapterfind-ClipAdapters.o biobambam2/bamadapterfind-KmerPoisson.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilteraux-bamfilteraux.o `test -f 'programs/bamfilteraux.cpp' || echo './'`programs/bamfilteraux.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilteraux.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilteraux.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilteraux.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilteraux.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilteraux.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilteraux.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilteraux-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilteraux programs/bamfilteraux-bamfilteraux.o biobambam2/bamfilteraux-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxsort-bamauxsort.o `test -f 'programs/bamauxsort.cpp' || echo './'`programs/bamauxsort.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxsort.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxsort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxsort.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxsort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxsort programs/bamauxsort-bamauxsort.o biobambam2/bamauxsort-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamadapterclip-bamadapterclip.o `test -f 'programs/bamadapterclip.cpp' || echo './'`programs/bamadapterclip.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:23, from programs/bamadapterclip.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterclip.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterclip.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bamadapterclip.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:23, from programs/bamadapterclip.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamadapterclip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterclip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamadapterclip-ClipAdapters.o `test -f 'biobambam2/ClipAdapters.cpp' || echo './'`biobambam2/ClipAdapters.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamadapterclip programs/bamadapterclip-bamadapterclip.o biobambam2/bamadapterclip-Licensing.o biobambam2/bamadapterclip-ClipAdapters.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamadapterclip programs/bamadapterclip-bamadapterclip.o biobambam2/bamadapterclip-Licensing.o biobambam2/bamadapterclip-ClipAdapters.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamcollate2-bamcollate2.o `test -f 'programs/bamcollate2.cpp' || echo './'`programs/bamcollate2.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator' {aka '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:26, from programs/bamcollate2.cpp:29: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::BamWriterTemplate<_base_type>::BamWriterTemplate(libmaus2::bambam::BamWriterTemplate<_base_type>::base_type&, const libmaus2::bambam::BamHeader&, const std::vector*) [with _base_type = libmaus2::bambam::BamWriterParallelStreamBase]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual std::vector > libmaus2::bambam::BamRange::getChunks(const libmaus2::bambam::BamIndex&) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamcollate2.cpp:22: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamcollate2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcollate2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcollate2-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcollate2-ResetAlignment.o `test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamcollate2 programs/bamcollate2-bamcollate2.o biobambam2/bamcollate2-Licensing.o biobambam2/bamcollate2-AttachRank.o biobambam2/bamcollate2-ResetAlignment.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamcollate2 programs/bamcollate2-bamcollate2.o biobambam2/bamcollate2-Licensing.o biobambam2/bamcollate2-AttachRank.o biobambam2/bamcollate2-ResetAlignment.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12auxmerge-bam12auxmerge.o `test -f 'programs/bam12auxmerge.cpp' || echo './'`programs/bam12auxmerge.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:23, from programs/bam12auxmerge.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bam12auxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bam12auxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/QReorder.hpp:27, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:22, from programs/bam12auxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/AdapterFilter.hpp:23, from programs/bam12auxmerge.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12auxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-Split12.o `test -f 'biobambam2/Split12.cpp' || echo './'`biobambam2/Split12.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-Strip12.o `test -f 'biobambam2/Strip12.cpp' || echo './'`biobambam2/Strip12.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-ClipReinsert.o `test -f 'biobambam2/ClipReinsert.cpp' || echo './'`biobambam2/ClipReinsert.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12auxmerge-zzToName.o `test -f 'biobambam2/zzToName.cpp' || echo './'`biobambam2/zzToName.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bam12auxmerge programs/bam12auxmerge-bam12auxmerge.o biobambam2/bam12auxmerge-Licensing.o biobambam2/bam12auxmerge-Split12.o biobambam2/bam12auxmerge-Strip12.o biobambam2/bam12auxmerge-ClipReinsert.o biobambam2/bam12auxmerge-zzToName.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bam12auxmerge programs/bam12auxmerge-bam12auxmerge.o biobambam2/bam12auxmerge-Licensing.o biobambam2/bam12auxmerge-Split12.o biobambam2/bam12auxmerge-Strip12.o biobambam2/bam12auxmerge-ClipReinsert.o biobambam2/bam12auxmerge-zzToName.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12split-bam12split.o `test -f 'programs/bam12split.cpp' || echo './'`programs/bam12split.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bam12split.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bam12split.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bam12split.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bam12split.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bam12split.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12split.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12split-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12split-Split12.o `test -f 'biobambam2/Split12.cpp' || echo './'`biobambam2/Split12.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bam12split programs/bam12split-bam12split.o biobambam2/bam12split-Licensing.o biobambam2/bam12split-Split12.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bam12split programs/bam12split-bam12split.o biobambam2/bam12split-Licensing.o biobambam2/bam12split-Split12.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bam12strip-bam12strip.o `test -f 'programs/bam12strip.cpp' || echo './'`programs/bam12strip.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bam12strip.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bam12strip.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bam12strip.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bam12strip.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bam12strip.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bam12strip.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12strip-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bam12strip-Strip12.o `test -f 'biobambam2/Strip12.cpp' || echo './'`biobambam2/Strip12.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bam12strip programs/bam12strip-bam12strip.o biobambam2/bam12strip-Licensing.o biobambam2/bam12strip-Strip12.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bam12strip programs/bam12strip-bam12strip.o biobambam2/bam12strip-Licensing.o biobambam2/bam12strip-Strip12.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamreset-bamreset.o `test -f 'programs/bamreset.cpp' || echo './'`programs/bamreset.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamreset.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamreset.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamreset.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamreset.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamreset.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamreset.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreset-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamreset-ResetAlignment.o `test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamreset programs/bamreset-bamreset.o biobambam2/bamreset-Licensing.o biobambam2/bamreset-ResetAlignment.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamreset programs/bamreset-bamreset.o biobambam2/bamreset-Licensing.o biobambam2/bamreset-ResetAlignment.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrank-bamrank.o `test -f 'programs/bamrank.cpp' || echo './'`programs/bamrank.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrank.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrank.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrank.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrank.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrank.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrank.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrank-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrank-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrank programs/bamrank-bamrank.o biobambam2/bamrank-Licensing.o biobambam2/bamrank-AttachRank.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrank programs/bamrank-bamrank.o biobambam2/bamrank-Licensing.o biobambam2/bamrank-AttachRank.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamclipreinsert-bamclipreinsert.o `test -f 'programs/bamclipreinsert.cpp' || echo './'`programs/bamclipreinsert.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamclipreinsert.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamclipreinsert.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamclipreinsert.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamclipreinsert.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamclipreinsert.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipreinsert.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamclipreinsert-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamclipreinsert-ClipReinsert.o `test -f 'biobambam2/ClipReinsert.cpp' || echo './'`biobambam2/ClipReinsert.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamclipreinsert programs/bamclipreinsert-bamclipreinsert.o biobambam2/bamclipreinsert-Licensing.o biobambam2/bamclipreinsert-ClipReinsert.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamclipreinsert programs/bamclipreinsert-bamclipreinsert.o biobambam2/bamclipreinsert-Licensing.o biobambam2/bamclipreinsert-ClipReinsert.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamzztoname-bamzztoname.o `test -f 'programs/bamzztoname.cpp' || echo './'`programs/bamzztoname.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamzztoname.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamzztoname.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamzztoname.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamzztoname.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamzztoname.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamzztoname.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamzztoname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamzztoname-zzToName.o `test -f 'biobambam2/zzToName.cpp' || echo './'`biobambam2/zzToName.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamzztoname programs/bamzztoname-bamzztoname.o biobambam2/bamzztoname-Licensing.o biobambam2/bamzztoname-zzToName.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamzztoname programs/bamzztoname-bamzztoname.o biobambam2/bamzztoname-Licensing.o biobambam2/bamzztoname-zzToName.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/kmerprob-kmerprob.o `test -f 'programs/kmerprob.cpp' || echo './'`programs/kmerprob.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/kmerprob-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/kmerprob-KmerPoisson.o `test -f 'biobambam2/KmerPoisson.cpp' || echo './'`biobambam2/KmerPoisson.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o kmerprob programs/kmerprob-kmerprob.o biobambam2/kmerprob-Licensing.o biobambam2/kmerprob-KmerPoisson.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o kmerprob programs/kmerprob-kmerprob.o biobambam2/kmerprob-Licensing.o biobambam2/kmerprob-KmerPoisson.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamindex-bamindex.o `test -f 'programs/bamindex.cpp' || echo './'`programs/bamindex.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:31, from programs/bamindex.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:31, from programs/bamindex.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamIndexGenerator.hpp:22, from programs/bamindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamindex-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamindex programs/bamindex-bamindex.o biobambam2/bamindex-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterflags-bamfilterflags.o `test -f 'programs/bamfilterflags.cpp' || echo './'`programs/bamfilterflags.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterflags.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterflags.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterflags.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterflags.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterflags.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfInflateDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterflags.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterflags.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterflags.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterflags.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterflags.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamfilterflags.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterflags.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterflags.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterflags-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterflags programs/bamfilterflags-bamfilterflags.o biobambam2/bamfilterflags-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterflags programs/bamfilterflags-bamfilterflags.o biobambam2/bamfilterflags-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterrg-bamfilterrg.o `test -f 'programs/bamfilterrg.cpp' || echo './'`programs/bamfilterrg.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterrg.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterrg.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterrg.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterrg.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterrg.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrg.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterrg-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterrg programs/bamfilterrg-bamfilterrg.o biobambam2/bamfilterrg-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterrg programs/bamfilterrg-bamfilterrg.o biobambam2/bamfilterrg-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdownsamplerandom-bamdownsamplerandom.o `test -f 'programs/bamdownsamplerandom.cpp' || echo './'`programs/bamdownsamplerandom.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator' {aka '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:26, from programs/bamdownsamplerandom.cpp:29: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual std::vector > libmaus2::bambam::BamRange::getChunks(const libmaus2::bambam::BamIndex&) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from ./biobambam2/AttachRank.hpp:22, from programs/bamdownsamplerandom.cpp:22: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdownsamplerandom.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdownsamplerandom-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamdownsamplerandom programs/bamdownsamplerandom-bamdownsamplerandom.o biobambam2/bamdownsamplerandom-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdownsamplerandom programs/bamdownsamplerandom-bamdownsamplerandom.o biobambam2/bamdownsamplerandom-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicates2-bammarkduplicates2.o `test -f 'programs/bammarkduplicates2.cpp' || echo './'`programs/bammarkduplicates2.cpp In file included from programs/bammarkduplicates2.cpp:43: /usr/include/libmaus2/bambam/DupMarkBase.hpp: In static member function 'static uint64_t libmaus2::bambam::DupMarkBase::markDuplicateFrags(iterator, iterator, libmaus2::bambam::DupSetCallback&) [with iterator = __gnu_cxx::__normal_iterator >; projector = libmaus2::bambam::DupMarkBase::MarkDuplicateProjectorIdentity]': /usr/include/libmaus2/bambam/DupMarkBase.hpp:367:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 static uint64_t markDuplicateFrags(iterator const lfrags_a, iterator const lfrags_e, ::libmaus2::bambam::DupSetCallback & DSC) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/bambam/DupMarkBase.hpp:367:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadEnds&}; _Tp = libmaus2::bambam::ReadEnds; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentListNode.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentFreeList.hpp:22, from programs/bammarkduplicates2.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::SortedFragDecoder::getNext(std::vector&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:63, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = libmaus2::bambam::Chromosome*; bool _TrivialValueTypes = false]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = libmaus2::bambam::ReadGroup*; bool _TrivialValueTypes = false]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfInflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfInflateDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator' {aka '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:27, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual std::vector > libmaus2::bambam::BamRange::getChunks(const libmaus2::bambam::BamIndex&) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::ReadEnds; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__make_heap(__first, __middle, __comp); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicates2.cpp:43: /usr/include/libmaus2/bambam/DupMarkBase.hpp: In static member function 'static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairsOpt(iterator, iterator, libmaus2::bambam::DupSetCallback&, unsigned int, libmaus2::bambam::DupMarkBase::MarkOptical*) [with iterator = __gnu_cxx::__normal_iterator >; projector = libmaus2::bambam::DupMarkBase::MarkDuplicateProjectorIdentity; bool bmarkopt = false]': /usr/include/libmaus2/bambam/DupMarkBase.hpp:79:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 static uint64_t markDuplicatePairsOpt( ^~~~~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/bambam/DupMarkBase.hpp:79:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/MemoryFile.hpp:27, from /usr/include/libmaus2/aio/MemoryFileAdapter.hpp:27, from /usr/include/libmaus2/aio/MemoryFileContainer.hpp:22, from /usr/include/libmaus2/aio/FileRemoval.hpp:22, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:29, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentListNode.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentFreeList.hpp:22, from programs/bammarkduplicates2.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::BamMergeTemplate(const std::vector >&, bool) [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicates2.cpp:43: /usr/include/libmaus2/bambam/DupMarkBase.hpp: In function 'int main(int, char**)': /usr/include/libmaus2/bambam/DupMarkBase.hpp:260:74: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicatePairsOpt(lfrags_a,lfrags_e,DSC,optminpixeldif,0 /* mark opt */); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicates2.cpp:43: /usr/include/libmaus2/bambam/DupMarkBase.hpp:260:74: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicatePairsOpt(lfrags_a,lfrags_e,DSC,optminpixeldif,0 /* mark opt */); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicates2.cpp:43: /usr/include/libmaus2/bambam/DupMarkBase.hpp:457:122: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicateFrags::const_iterator,MarkDuplicateProjectorIdentity>(lfrags.begin(),lfrags.end(),DSC); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/TempFileRemovalContainer.hpp:24, from programs/bammarkduplicates2.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicates2.cpp:43: /usr/include/libmaus2/bambam/DupMarkBase.hpp:457:122: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicateFrags::const_iterator,MarkDuplicateProjectorIdentity>(lfrags.begin(),lfrags.end(),DSC); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicates2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammarkduplicates2 programs/bammarkduplicates2-bammarkduplicates2.o biobambam2/bammarkduplicates2-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicates2 programs/bammarkduplicates2-bammarkduplicates2.o biobambam2/bammarkduplicates2-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamcat-bamcat.o `test -f 'programs/bamcat.cpp' || echo './'`programs/bamcat.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamCatHeader.hpp:22, from /usr/include/libmaus2/bambam/BamCat.hpp:22, from programs/bamcat.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function 'static std::vector libmaus2::bambam::BamAlignmentDecoderInfo::filenameToInfo(const std::vector >&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamCat.hpp:22, from programs/bamcat.cpp:25: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcat.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamCatHeader.hpp:22, from /usr/include/libmaus2/bambam/BamCat.hpp:22, from programs/bamcat.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamcat.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcat-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamcat programs/bamcat-bamcat.o biobambam2/bamcat-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamcat programs/bamcat-bamcat.o biobambam2/bamcat-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammerge-bammerge.o `test -f 'programs/bammerge.cpp' || echo './'`programs/bammerge.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bammerge.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function 'static std::vector libmaus2::bambam::BamAlignmentDecoderInfo::filenameToInfo(const libmaus2::util::ArgInfo&, const std::vector >&, const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from programs/bammerge.cpp:26: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bammerge.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bammerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bammerge.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammerge programs/bammerge-bammerge.o biobambam2/bammerge-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammerge programs/bammerge-bammerge.o biobambam2/bammerge-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsplit-bamsplit.o `test -f 'programs/bamsplit.cpp' || echo './'`programs/bamsplit.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsplit.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamsplit.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamsplit.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamsplit.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsplit.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsplit-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsplit programs/bamsplit-bamsplit.o biobambam2/bamsplit-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsplit programs/bamsplit-bamsplit.o biobambam2/bamsplit-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsplitdiv-bamsplitdiv.o `test -f 'programs/bamsplitdiv.cpp' || echo './'`programs/bamsplitdiv.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsplitdiv.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsplitdiv.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsplitdiv.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamsplitdiv.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsplitdiv.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamsplitdiv.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamsplitdiv.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsplitdiv.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamsplitdiv.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsplitdiv.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamsplitdiv.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsplitdiv.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsplitdiv-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsplitdiv programs/bamsplitdiv-bamsplitdiv.o biobambam2/bamsplitdiv-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsplitdiv programs/bamsplitdiv-bamsplitdiv.o biobambam2/bamsplitdiv-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamchecksort-bamchecksort.o `test -f 'programs/bamchecksort.cpp' || echo './'`programs/bamchecksort.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamchecksort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamchecksort.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamchecksort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamchecksort.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamchecksort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamchecksort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamchecksort.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamchecksort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamchecksort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamchecksort.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamchecksort.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamchecksort.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamchecksort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamchecksort programs/bamchecksort-bamchecksort.o biobambam2/bamchecksort-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamchecksort programs/bamchecksort-bamchecksort.o biobambam2/bamchecksort-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastqtobam-fastqtobam.o `test -f 'programs/fastqtobam.cpp' || echo './'`programs/fastqtobam.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/fastx/CharBuffer.hpp:22, from /usr/include/libmaus2/aio/SynchronousFastReaderBase.hpp:24, from /usr/include/libmaus2/fastx/FastQReader.hpp:27, from /usr/include/libmaus2/fastx/StreamFastQReader.hpp:23, from programs/fastqtobam.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/CharBuffer.hpp:22, from /usr/include/libmaus2/aio/SynchronousFastReaderBase.hpp:24, from /usr/include/libmaus2/fastx/FastQReader.hpp:27, from /usr/include/libmaus2/fastx/StreamFastQReader.hpp:23, from programs/fastqtobam.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/fastx/CharBuffer.hpp:22, from /usr/include/libmaus2/aio/SynchronousFastReaderBase.hpp:24, from /usr/include/libmaus2/fastx/FastQReader.hpp:27, from /usr/include/libmaus2/fastx/StreamFastQReader.hpp:23, from programs/fastqtobam.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/fastx/CharBuffer.hpp:22, from /usr/include/libmaus2/aio/SynchronousFastReaderBase.hpp:24, from /usr/include/libmaus2/fastx/FastQReader.hpp:27, from /usr/include/libmaus2/fastx/StreamFastQReader.hpp:23, from programs/fastqtobam.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/fastx/CharBuffer.hpp:22, from /usr/include/libmaus2/aio/SynchronousFastReaderBase.hpp:24, from /usr/include/libmaus2/fastx/FastQReader.hpp:27, from /usr/include/libmaus2/fastx/StreamFastQReader.hpp:23, from programs/fastqtobam.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::BamParallelWriter::BamParallelWriter(std::ostream&, uint64_t, const libmaus2::bambam::BamHeader&, int, const std::vector*)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobam-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastqtobam programs/fastqtobam-fastqtobam.o biobambam2/fastqtobam-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastqtobam programs/fastqtobam-fastqtobam.o biobambam2/fastqtobam-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixmateinformation-bamfixmateinformation.o `test -f 'programs/bamfixmateinformation.cpp' || echo './'`programs/bamfixmateinformation.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamfixmateinformation.cpp:32: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfixmateinformation.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfixmateinformation.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixmateinformation-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfixmateinformation programs/bamfixmateinformation-bamfixmateinformation.o biobambam2/bamfixmateinformation-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfixmateinformation programs/bamfixmateinformation-bamfixmateinformation.o biobambam2/bamfixmateinformation-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamseqchksum-bamseqchksum.o `test -f 'programs/bamseqchksum.cpp' || echo './'`programs/bamseqchksum.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algobase.h:71, from /usr/arm-linux-gnueabihf/include/c++/8/bits/char_traits.h:39, from /usr/arm-linux-gnueabihf/include/c++/8/ios:40, from /usr/arm-linux-gnueabihf/include/c++/8/ostream:38, from /usr/arm-linux-gnueabihf/include/c++/8/iostream:39, from programs/bamseqchksum.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator >; _Iterator2 = __gnu_cxx::__normal_iterator >; _Compare = DComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/predefined_ops.h:142:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 operator()(_Iterator1 __it1, _Iterator2 __it2) ^~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/predefined_ops.h:142:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1847:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 if (__comp(__i, __first)) ~~~~~~^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:222:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 if (__comp(__first + __secondChild, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ __first + (__secondChild - 1))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:81:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 if (__comp(__a, __b)) ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:83:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 if (__comp(__b, __c)) ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:85:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 else if (__comp(__a, __c)) ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:90:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 else if (__comp(__a, __c)) ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:92:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 else if (__comp(__b, __c)) ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void evaluateStats(const std::vector&, const std::vector&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/ChecksumsInterface.hpp:22, from /usr/include/libmaus2/bambam/ChecksumsFactory.hpp:22, from programs/bamseqchksum.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamseqchksum-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamseqchksum programs/bamseqchksum-bamseqchksum.o biobambam2/bamseqchksum-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamseqchksum programs/bamseqchksum-bamseqchksum.o biobambam2/bamseqchksum-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/normalisefasta-normalisefasta.o `test -f 'programs/normalisefasta.cpp' || echo './'`programs/normalisefasta.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/normalisefasta.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::BgzfFastAIndexEntry}; _Tp = libmaus2::fastx::BgzfFastAIndexEntry; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function 'void normalisefastaBgzf(const libmaus2::util::ArgInfo&, std::ostream&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/normalisefasta-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o normalisefasta programs/normalisefasta-normalisefasta.o biobambam2/normalisefasta-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o normalisefasta programs/normalisefasta-normalisefasta.o biobambam2/normalisefasta-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterheader-bamfilterheader.o `test -f 'programs/bamfilterheader.cpp' || echo './'`programs/bamfilterheader.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamfilterheader.cpp:21: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfilterheader.cpp:20: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterheader-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterheader programs/bamfilterheader-bamfilterheader.o biobambam2/bamfilterheader-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterheader programs/bamfilterheader-bamfilterheader.o biobambam2/bamfilterheader-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterheader2-bamfilterheader2.o `test -f 'programs/bamfilterheader2.cpp' || echo './'`programs/bamfilterheader2.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamfilterheader2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from programs/bamfilterheader2.cpp:20: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamfilterheader2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamfilterheader2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __final_insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamfilterheader2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamfilterheader2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamfilterheader2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamfilterheader2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamfilterheader2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamfilterheader2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamHeaderLowMem::setupFromText()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamfilterheader2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from programs/bamfilterheader2.cpp:20: /usr/include/libmaus2/hashing/ConstantStringHash.hpp:71:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 unique_ptr_type u(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:24, from programs/bamfilterheader2.cpp:20: /usr/include/libmaus2/bambam/BamHeaderLowMem.hpp:802:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterheader2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterheader2 programs/bamfilterheader2-bamfilterheader2.o biobambam2/bamfilterheader2-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterheader2 programs/bamfilterheader2-bamfilterheader2.o biobambam2/bamfilterheader2-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammdnm-bammdnm.o `test -f 'programs/bammdnm.cpp' || echo './'`programs/bammdnm.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastAIndexEntry}; _Tp = libmaus2::fastx::FastAIndexEntry; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bammdnm.cpp:28: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::fastx::FastAIndex::FastAIndex(std::istream&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bammdnm.cpp:28: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bammdnm.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammdnm-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammdnm programs/bammdnm-bammdnm.o biobambam2/bammdnm-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammdnm programs/bammdnm-bammdnm.o biobambam2/bammdnm-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammapdist-bammapdist.o `test -f 'programs/bammapdist.cpp' || echo './'`programs/bammapdist.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bammapdist.cpp:20: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bammapdist.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammapdist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammapdist programs/bammapdist-bammapdist.o biobambam2/bammapdist-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammapdist programs/bammapdist-bammapdist.o biobambam2/bammapdist-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamvalidate-bamvalidate.o `test -f 'programs/bamvalidate.cpp' || echo './'`programs/bamvalidate.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamvalidate.cpp:23: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamvalidate.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamvalidate-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamvalidate programs/bamvalidate-bamvalidate.o biobambam2/bamvalidate-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamvalidate programs/bamvalidate-bamvalidate.o biobambam2/bamvalidate-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamflagsplit-bamflagsplit.o `test -f 'programs/bamflagsplit.cpp' || echo './'`programs/bamflagsplit.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamflagsplit.cpp:32: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamflagsplit.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamflagsplit.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamflagsplit-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamflagsplit programs/bamflagsplit-bamflagsplit.o biobambam2/bamflagsplit-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamflagsplit programs/bamflagsplit-bamflagsplit.o biobambam2/bamflagsplit-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamintervalcomment-bamintervalcomment.o `test -f 'programs/bamintervalcomment.cpp' || echo './'`programs/bamintervalcomment.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const NamedInterval&}; _Tp = NamedInterval; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, std::pair >; _KeyOfValue = std::_Select1st, std::pair > >; _Compare = std::less >; _Alloc = std::allocator, std::pair > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, std::pair >, std::_Select1st, std::pair > >, std::less >, std::allocator, std::pair > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator, std::pair > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = std::pair; _Compare = std::less >; _Alloc = std::allocator, std::pair > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, std::pair >, std::_Select1st, std::pair > >, std::less >, std::allocator, std::pair > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator, std::pair > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamintervalcomment.cpp:29: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = NamedInterval; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = NamedInterval; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcomment.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'NamedIntervalGeneSet::NamedIntervalGeneSet(const string&, const libmaus2::bambam::BamHeader&, bool, std::__cxx11::string)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcomment.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamintervalcomment-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamintervalcomment programs/bamintervalcomment-bamintervalcomment.o biobambam2/bamintervalcomment-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamintervalcomment programs/bamintervalcomment-bamintervalcomment.o biobambam2/bamintervalcomment-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamintervalcommenthist-bamintervalcommenthist.o `test -f 'programs/bamintervalcommenthist.cpp' || echo './'`programs/bamintervalcommenthist.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In member function 'void IntervalPairHistogram::evaluateList(std::vector&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:161:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return __find_if(__first, __last, __pred, ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamintervalcommenthist.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamintervalcommenthist.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamintervalcommenthist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamintervalcommenthist programs/bamintervalcommenthist-bamintervalcommenthist.o biobambam2/bamintervalcommenthist-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamintervalcommenthist programs/bamintervalcommenthist-bamintervalcommenthist.o biobambam2/bamintervalcommenthist-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o `test -f 'programs/bamstreamingmarkduplicates.cpp' || echo './'`programs/bamstreamingmarkduplicates.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OpticalExternalInfoElement&}; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OpticalExternalInfoElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamstreamingmarkduplicates.cpp:30: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/unordered_map:46, from /usr/include/libmaus2/util/unordered_map.hpp:25, from /usr/include/libmaus2/bambam/Chromosome.hpp:30, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:24, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamstreamingmarkduplicates.cpp:30: /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = long long unsigned int; _Value = std::pair; _Alloc = std::allocator >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to; _H1 = std::hash; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]': /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h:1872:5: note: parameter passing for argument of type 'std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator' {aka 'std::__detail::_Node_const_iterator, false, false>'} changed in GCC 7.1 _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _H1, _H2, _Hash, _RehashPolicy, _Traits>:: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/unordered_map:46, from /usr/include/libmaus2/util/unordered_map.hpp:25, from /usr/include/libmaus2/bambam/Chromosome.hpp:30, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:24, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamstreamingmarkduplicates.cpp:30: /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h: In member function 'void libmaus2::lru::SparseLRUFileBunch::remove(uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type 'std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator' {aka 'std::__detail::_Node_const_iterator, false, false>'} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::BamStreamingMarkDuplicatesSupport::FragmentHashKeyType&}; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::FragmentHashKeyType; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::FragmentHashKeyType; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::FragmentHashKeyType; _Sequence = std::vector; _Compare = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::FragmentHashKeyHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::BamStreamingMarkDuplicatesSupport::PairHashKeyType&}; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::PairHashKeyType; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::PairHashKeyType; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/unordered_map:46, from /usr/include/libmaus2/util/unordered_map.hpp:25, from /usr/include/libmaus2/bambam/Chromosome.hpp:30, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:24, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamstreamingmarkduplicates.cpp:30: /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h: In member function 'void libmaus2::lru::SparseLRU::update(uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type 'std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator' {aka 'std::__detail::_Node_const_iterator, false, false>'} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'libmaus2::aio::InputOutputStream& libmaus2::lru::SparseLRUFileBunch::operator[](uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/unordered_map:46, from /usr/include/libmaus2/util/unordered_map.hpp:25, from /usr/include/libmaus2/bambam/Chromosome.hpp:30, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:24, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamstreamingmarkduplicates.cpp:30: /usr/arm-linux-gnueabihf/include/c++/8/bits/hashtable.h:762:42: note: parameter passing for argument of type 'std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator' {aka 'std::__detail::_Node_const_iterator, false, false>'} changed in GCC 7.1 { return erase(const_iterator(__it)); } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::PairHashKeyType; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::FragmentHashKeyType; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >::HeapOrderAdapter>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'bool libmaus2::sorting::MergingReadBack<_data_type, _order_type>::getNext(libmaus2::sorting::MergingReadBack<_data_type, _order_type>::data_type&) [with _data_type = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OpticalExternalInfoElement; _order_type = std::less]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::sorting::MergingReadBack<_data_type, _order_type>::MergingReadBack(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OpticalExternalInfoElement; _order_type = std::less]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function 'static std::vector libmaus2::sorting::MergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OpticalExternalInfoElement; _order_type = std::less]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamstreamingmarkduplicates.cpp:32: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from programs/bamstreamingmarkduplicates.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OutputQueue<_writer_type>::flushTempFile(uint64_t) [with _writer_type = libmaus2::bambam::BamBlockWriterBase]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OutputQueue<_writer_type>::push(libmaus2::bambam::BamAlignment*) [with _writer_type = libmaus2::bambam::BamBlockWriterBase]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamStreamingMarkDuplicates::addAlignment(libmaus2::bambam::BamAlignment&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamstreamingmarkduplicates.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'void libmaus2::bambam::BamStreamingMarkDuplicatesSupport::OutputQueue<_writer_type>::flush() [with _writer_type = libmaus2::bambam::BamBlockWriterBase]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamstreamingmarkduplicates.cpp:30: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from programs/bamstreamingmarkduplicates.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamStreamingMarkDuplicates::flush()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamstreamingmarkduplicates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamstreamingmarkduplicates programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o biobambam2/bamstreamingmarkduplicates-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamstreamingmarkduplicates programs/bamstreamingmarkduplicates-bamstreamingmarkduplicates.o biobambam2/bamstreamingmarkduplicates-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamheap2-bamheap2.o `test -f 'programs/bamheap2.cpp' || echo './'`programs/bamheap2.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastAIndexEntry}; _Tp = libmaus2::fastx::FastAIndexEntry; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'void libmaus2::util::Histogram::operator()(uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = long long unsigned int; _Tp = ConsensusAccuracy; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = HeapEntry; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::fastx::FastAIndex::FastAIndex(std::istream&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamheap2.cpp:19: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamheap2.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In function 'int bamheap2(const libmaus2::util::ArgInfo&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamheap2-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamheap2 programs/bamheap2-bamheap2.o biobambam2/bamheap2-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamheap2 programs/bamheap2-bamheap2.o biobambam2/bamheap2-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamalignfrac-bamalignfrac.o `test -f 'programs/bamalignfrac.cpp' || echo './'`programs/bamalignfrac.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamalignfrac.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamalignfrac.cpp:25: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamalignfrac.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamalignfrac.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamalignfrac.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamalignfrac-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamalignfrac programs/bamalignfrac-bamalignfrac.o biobambam2/bamalignfrac-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamalignfrac programs/bamalignfrac-bamalignfrac.o biobambam2/bamalignfrac-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamlastfilter-bamlastfilter.o `test -f 'programs/bamlastfilter.cpp' || echo './'`programs/bamlastfilter.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ScoredAlignment&}; _Tp = ScoredAlignment; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MappingRegion}; _Tp = MappingRegion; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ScoredAlignment; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::math::IntegerInterval}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ScoredInterval}; _Tp = ScoredInterval; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ScoredAlignment}; _Tp = ScoredAlignment; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ScoredAlignment; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter::IntegerIntervalComparator>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::IntegerIntervalComparator>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamlastfilter.cpp:21: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = MappingRegion; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = MappingRegion; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ScoredInterval; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = libmaus2::math::IntegerInterval; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::IntegerIntervalComparator>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::IntegerIntervalComparator>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In function 'void handleVector(std::vector&, libmaus2::autoarray::AutoArray >&, const libmaus2::bambam::BamHeader&, uint64_t&, uint64_t&, libmaus2::bambam::BamBlockWriterBase&, link_type_enum, double)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamlastfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamlastfilter-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamlastfilter programs/bamlastfilter-bamlastfilter.o biobambam2/bamlastfilter-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamlastfilter programs/bamlastfilter-bamlastfilter.o biobambam2/bamlastfilter-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilternames-bamfilternames.o `test -f 'programs/bamfilternames.cpp' || echo './'`programs/bamfilternames.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilternames.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilternames.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilternames.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilternames.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilternames.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilternames.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilternames-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilternames programs/bamfilternames-bamfilternames.o biobambam2/bamfilternames-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilternames programs/bamfilternames-bamfilternames.o biobambam2/bamfilternames-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamsormadup-bamsormadup.o `test -f 'programs/bamsormadup.cpp' || echo './'`programs/bamsormadup.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::FragmentAlignmentBuffer::FragmentAlignmentBufferCopyRequest&}; _Tp = libmaus2::bambam::parallel::FragmentAlignmentBuffer::FragmentAlignmentBufferCopyRequest; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector libmaus2::bambam::parallel::FragmentAlignmentBuffer::setupCopy(libmaus2::bambam::parallel::FragmentAlignmentBuffer&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadEnds&}; _Tp = libmaus2::bambam::ReadEnds; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'uint64_t libmaus2::index::ExternalMemoryIndexGenerator<_data_type, _base_level_log, _inner_level_log>::flush() [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __final_insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(std::priority_queue<_Tp, _Sequence, _Compare>::value_type&&) [with _Tp = std::pair; _Sequence = std::vector >; _Compare = libmaus2::bambam::ReadEndsHeapPairComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::pair libmaus2::bambam::ReadEndsBlockIndexSet::merge(std::vector >, bool (*)(const libmaus2::bambam::ReadEndsBase&, const libmaus2::bambam::ReadEndsBase&), uint64_t (*)(const std::vector&, libmaus2::bambam::DupSetCallback&), libmaus2::bambam::DupSetCallback&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::pair libmaus2::bambam::ReadEndsBlockIndexSet::mergePairs(std::vector >, bool (*)(const libmaus2::bambam::ReadEndsBase&, const libmaus2::bambam::ReadEndsBase&), uint64_t (*)(std::vector&, libmaus2::bambam::DupSetCallback&, unsigned int), libmaus2::bambam::DupSetCallback&, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::RefIdInterval}; _Tp = libmaus2::bambam::parallel::RefIdInterval; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::parallel::RefIdInterval}; _Tp = libmaus2::bambam::parallel::RefIdInterval; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::GenericInputControlStreamInfo}; _Tp = libmaus2::bambam::parallel::GenericInputControlStreamInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::parallel::GenericInputControlStreamInfo}; _Tp = libmaus2::bambam::parallel::GenericInputControlStreamInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::ReadEnds; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__make_heap(__first, __middle, __comp); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/ReadEndsBlockIndexSet.hpp:22, from /usr/include/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp:26, from /usr/include/libmaus2/bambam/parallel/BlockSortControl.hpp:42, from programs/bamsormadup.cpp:23: /usr/include/libmaus2/bambam/DupMarkBase.hpp: In static member function 'static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairsOpt(iterator, iterator, libmaus2::bambam::DupSetCallback&, unsigned int, libmaus2::bambam::DupMarkBase::MarkOptical*) [with iterator = __gnu_cxx::__normal_iterator >; projector = libmaus2::bambam::DupMarkBase::MarkDuplicateProjectorIdentity; bool bmarkopt = false]': /usr/include/libmaus2/bambam/DupMarkBase.hpp:79:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 static uint64_t markDuplicatePairsOpt( ^~~~~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/bambam/DupMarkBase.hpp:79:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ In file included from /usr/include/libmaus2/bambam/ReadEndsBlockIndexSet.hpp:22, from /usr/include/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp:26, from /usr/include/libmaus2/bambam/parallel/BlockSortControl.hpp:42, from programs/bamsormadup.cpp:23: /usr/include/libmaus2/bambam/DupMarkBase.hpp: In static member function 'static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairs(std::vector&, libmaus2::bambam::DupSetCallback&, unsigned int)': /usr/include/libmaus2/bambam/DupMarkBase.hpp:260:74: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicatePairsOpt(lfrags_a,lfrags_e,DSC,optminpixeldif,0 /* mark opt */); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In member function 'void libmaus2::bambam::BamHeaderLowMem::setupFromText()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp:71:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 unique_ptr_type u(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::GenericInputControlCompressionPending&}; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::GenericInputControlSubBlockPending; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::DecompressedPendingObject&}; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::push(libmaus2::parallel::LockedHeap<_value_type, _comparator_type>::value_type) [with _value_type = libmaus2::bambam::parallel::DecompressedPendingObject; _comparator_type = libmaus2::bambam::parallel::DecompressedPendingObjectHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject}; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject}; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::WritePendingObject}; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::genericInputControlBlockCompressionFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void libmaus2::bambam::parallel::BlockMergeControl::_ZThn60_N8libmaus26bambam8parallel17BlockMergeControlINS1_43GenericInputControlMergeHeapEntryCoordinateEE43genericInputControlBlockCompressionFinishedENS1_37GenericInputControlCompressionPendingE(libmaus2::bambam::parallel::GenericInputControlCompressionPending)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::genericInputControlBlockCompressionFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void libmaus2::bambam::parallel::BlockMergeControl::_ZThn60_N8libmaus26bambam8parallel17BlockMergeControlINS1_42GenericInputControlMergeHeapEntryQueryNameEE43genericInputControlBlockCompressionFinishedENS1_37GenericInputControlCompressionPendingE(libmaus2::bambam::parallel::GenericInputControlCompressionPending)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::GenericInputControlSubBlockPending}; _Tp = libmaus2::bambam::parallel::GenericInputControlSubBlockPending; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::parallel::GenericInputControlSubBlockPending}; _Tp = libmaus2::bambam::parallel::GenericInputControlSubBlockPending; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::smallLinearBlockCompressionPendingObjectFinished(const libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::smallLinearBlockCompressionPendingObjectFinished(const libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::addWritePendingBgzfBlock(int64_t, int64_t, libmaus2::lz::BgzfDeflateOutputBufferBase::shared_ptr_type, const libmaus2::lz::BgzfDeflateZStreamBaseFlushInfo&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::addWritePendingBgzfBlock(int64_t, int64_t, libmaus2::lz::BgzfDeflateOutputBufferBase::shared_ptr_type, const libmaus2::lz::BgzfDeflateZStreamBaseFlushInfo&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::fragmentAlignmentBufferReorderWorkPackageFinished(libmaus2::bambam::parallel::FragmentAlignmentBufferReorderWorkPackage*) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::fragmentAlignmentBufferReorderWorkPackageFinished(libmaus2::bambam::parallel::FragmentAlignmentBufferReorderWorkPackage*) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkCompressionPending() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::bamBlockIndexingBlockFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkCompressionPending() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::bamBlockIndexingBlockFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewriteReorderQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewriteReorderQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::fragmentAlignmentBufferRewriteFragmentComplete(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type&, libmaus2::bambam::parallel::FragmentAlignmentBuffer::shared_ptr_type&, uint64_t) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::fragmentAlignmentBufferRewriteFragmentComplete(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type&, libmaus2::bambam::parallel::FragmentAlignmentBuffer::shared_ptr_type&, uint64_t) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamsormadup.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamsormadup-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamsormadup programs/bamsormadup-bamsormadup.o biobambam2/bamsormadup-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamsormadup programs/bamsormadup-bamsormadup.o biobambam2/bamsormadup-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamexplode-bamexplode.o `test -f 'programs/bamexplode.cpp' || echo './'`programs/bamexplode.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamexplode.cpp:19: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamexplode.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamexplode-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamexplode programs/bamexplode-bamexplode.o biobambam2/bamexplode-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamexplode programs/bamexplode-bamexplode.o biobambam2/bamexplode-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastqtobampar-fastqtobampar.o `test -f 'programs/fastqtobampar.cpp' || echo './'`programs/fastqtobampar.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/fastqtobampar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::GenericInputControlCompressionPending&}; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/fastqtobampar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::FastqToBamControlSubReadPending; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/fastqtobampar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/fastqtobampar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/fastqtobampar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/fastqtobampar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::parallel::FastqToBamControl::checkWritePendingQueue()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::parallel::FastqToBamControl::checkCompressionPendingQueue()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/fastqtobampar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::FastqToBamControlSubReadPending; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/fastqtobampar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:63, from ./biobambam2/Licensing.hpp:23, from programs/fastqtobampar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = libmaus2::bambam::parallel::FastqToBamControlSubReadPending*; bool _TrivialValueTypes = false]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/fastqtobampar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::FastqToBamControlSubReadPending&}; _Tp = libmaus2::bambam::parallel::FastqToBamControlSubReadPending; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:63, from ./biobambam2/Licensing.hpp:23, from programs/fastqtobampar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/fastqtobampar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::parallel::FastqToBamControl::checkSubReadPendingQueue()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void libmaus2::bambam::parallel::FastqToBamControl::genericInputControlBlockCompressionFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastqtobampar-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastqtobampar programs/fastqtobampar-fastqtobampar.o biobambam2/fastqtobampar-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastqtobampar programs/fastqtobampar-fastqtobampar.o biobambam2/fastqtobampar-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamranksort-bamranksort.o `test -f 'programs/bamranksort.cpp' || echo './'`programs/bamranksort.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamranksort.cpp:27: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamranksort.cpp:29: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamranksort.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamranksort.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamranksort.cpp:27: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamranksort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamranksort programs/bamranksort-bamranksort.o biobambam2/bamranksort-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamranksort programs/bamranksort-bamranksort.o biobambam2/bamranksort-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/lasToBAM-lasToBAM.o `test -f 'programs/lasToBAM.cpp' || echo './'`programs/lasToBAM.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::dazzler::db::FastaInfo}; _Tp = libmaus2::dazzler::db::FastaInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastAIndexEntry}; _Tp = libmaus2::fastx::FastAIndexEntry; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::dazzler::db::DatabaseFile::DatabaseFile(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from programs/lasToBAM.cpp:23: /usr/include/libmaus2/dazzler/db/DatabaseFile.hpp:1090:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::fastx::FastAIndex::FastAIndex(std::istream&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/lasToBAM.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/lasToBAM-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o lasToBAM programs/lasToBAM-lasToBAM.o biobambam2/lasToBAM-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o lasToBAM programs/lasToBAM-lasToBAM.o biobambam2/lasToBAM-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtagconversion-bamtagconversion.o `test -f 'programs/bamtagconversion.cpp' || echo './'`programs/bamtagconversion.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamtagconversion.cpp:33: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamtagconversion.cpp:35: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamtagconversion.cpp:32: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamtagconversion.cpp:33: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtagconversion-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamtagconversion programs/bamtagconversion-bamtagconversion.o biobambam2/bamtagconversion-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtagconversion programs/bamtagconversion-bamtagconversion.o biobambam2/bamtagconversion-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastaexplode-fastaexplode.o `test -f 'programs/fastaexplode.cpp' || echo './'`programs/fastaexplode.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastaexplode-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastaexplode programs/fastaexplode-fastaexplode.o biobambam2/fastaexplode-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastaexplode programs/fastaexplode-fastaexplode.o biobambam2/fastaexplode-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrecalculatecigar-bamrecalculatecigar.o `test -f 'programs/bamrecalculatecigar.cpp' || echo './'`programs/bamrecalculatecigar.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamCatHeader.hpp:22, from /usr/include/libmaus2/bambam/BamCat.hpp:22, from programs/bamrecalculatecigar.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastAIndexEntry}; _Tp = libmaus2::fastx::FastAIndexEntry; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::fastx::FastAIndex::FastAIndex(std::istream&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamCat.hpp:22, from programs/bamrecalculatecigar.cpp:25: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrecalculatecigar.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrecalculatecigar.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamCatHeader.hpp:22, from /usr/include/libmaus2/bambam/BamCat.hpp:22, from programs/bamrecalculatecigar.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrecalculatecigar-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrecalculatecigar programs/bamrecalculatecigar-bamrecalculatecigar.o biobambam2/bamrecalculatecigar-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrecalculatecigar programs/bamrecalculatecigar-bamrecalculatecigar.o biobambam2/bamrecalculatecigar-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/filtersam-filtersam.o `test -f 'programs/filtersam.cpp' || echo './'`programs/filtersam.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:22, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from programs/filtersam.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from programs/filtersam.cpp:18: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:22, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from programs/filtersam.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:22, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from programs/filtersam.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:22, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from programs/filtersam.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:22, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from programs/filtersam.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:22, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from programs/filtersam.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:22, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from programs/filtersam.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:22, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from programs/filtersam.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:22, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from programs/filtersam.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from programs/filtersam.cpp:18: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/bambam/BamHeaderParserState.hpp:22, from /usr/include/libmaus2/bambam/BamHeader.hpp:22, from programs/filtersam.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/filtersam-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o filtersam programs/filtersam-filtersam.o biobambam2/filtersam-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o filtersam programs/filtersam-filtersam.o biobambam2/filtersam-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfiltermc-bamfiltermc.o `test -f 'programs/bamfiltermc.cpp' || echo './'`programs/bamfiltermc.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamfiltermc.cpp:21: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfiltermc.cpp:20: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfiltermc-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfiltermc programs/bamfiltermc-bamfiltermc.o biobambam2/bamfiltermc-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfiltermc programs/bamfiltermc-bamfiltermc.o biobambam2/bamfiltermc-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamnumericalindex-bamnumericalindex.o `test -f 'programs/bamnumericalindex.cpp' || echo './'`programs/bamnumericalindex.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from programs/bamnumericalindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp:26, from programs/bamnumericalindex.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from programs/bamnumericalindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from programs/bamnumericalindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from programs/bamnumericalindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from programs/bamnumericalindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from programs/bamnumericalindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from programs/bamnumericalindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/parallel/PosixSpinLock.hpp:23, from /usr/include/libmaus2/aio/StreamLock.hpp:21, from /usr/include/libmaus2/autoarray/GenericAlignedAllocation.hpp:23, from /usr/include/libmaus2/autoarray/AutoArray.hpp:26, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from programs/bamnumericalindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/aio/Buffer.hpp:22, from /usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from programs/bamnumericalindex.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp:26, from programs/bamnumericalindex.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamnumericalindex-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamnumericalindex programs/bamnumericalindex-bamnumericalindex.o biobambam2/bamnumericalindex-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamnumericalindex programs/bamnumericalindex-bamnumericalindex.o biobambam2/bamnumericalindex-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bammarkduplicatesopt-bammarkduplicatesopt.o `test -f 'programs/bammarkduplicatesopt.cpp' || echo './'`programs/bammarkduplicatesopt.cpp In file included from programs/bammarkduplicatesopt.cpp:36: /usr/include/libmaus2/bambam/DupMarkBase.hpp: In static member function 'static uint64_t libmaus2::bambam::DupMarkBase::markDuplicateFrags(iterator, iterator, libmaus2::bambam::DupSetCallback&) [with iterator = __gnu_cxx::__normal_iterator >; projector = libmaus2::bambam::DupMarkBase::MarkDuplicateProjectorIdentity]': /usr/include/libmaus2/bambam/DupMarkBase.hpp:367:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 static uint64_t markDuplicateFrags(iterator const lfrags_a, iterator const lfrags_e, ::libmaus2::bambam::DupSetCallback & DSC) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/bambam/DupMarkBase.hpp:367:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadEnds&}; _Tp = libmaus2::bambam::ReadEnds; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentInputCallbackBam.hpp:22, from programs/bammarkduplicatesopt.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::SortedFragDecoder::getNext(std::vector&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:63, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = libmaus2::bambam::Chromosome*; bool _TrivialValueTypes = false]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = libmaus2::bambam::ReadGroup*; bool _TrivialValueTypes = false]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__uninitialized_copy<__is_trivial(_ValueType1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __is_trivial(_ValueType2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && __assignable>:: ~~~~~~~~~~~~~~~~~~ __uninit_copy(__first, __last, __result); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::HeapOrderAdapter>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >::HeapOrderAdapter>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::HeapOrderAdapter>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'bool libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::getNext(libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::data_type&) [with _data_type = OptEntry; _order_type = OptEntryRefRankCmp]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::SerialisingMergingReadBack(const string&, const std::vector::BlockDescriptor>&, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t) [with _data_type = OptEntry; _order_type = OptEntryRefRankCmp]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function 'static std::vector::BlockDescriptor> libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector::BlockDescriptor>&, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t, uint64_t) [with _data_type = OptEntry; _order_type = OptEntryRefRankCmp]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator' {aka '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In constructor 'libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::SerialisingMergingReadBack(const string&, const std::vector::BlockDescriptor>&, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t) [with _data_type = libmaus2::bambam::OptName; _order_type = std::less]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:397:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__make_heap(__first, __last, __cmp); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual std::vector > libmaus2::bambam::BamRange::getChunks(const libmaus2::bambam::BamIndex&) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::ReadEnds; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__make_heap(__first, __middle, __comp); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicatesopt.cpp:36: /usr/include/libmaus2/bambam/DupMarkBase.hpp: In static member function 'static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairsOpt(iterator, iterator, libmaus2::bambam::DupSetCallback&, unsigned int, libmaus2::bambam::DupMarkBase::MarkOptical*) [with iterator = __gnu_cxx::__normal_iterator >; projector = libmaus2::bambam::DupMarkBase::MarkDuplicateProjectorIdentity; bool bmarkopt = true]': /usr/include/libmaus2/bambam/DupMarkBase.hpp:79:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 static uint64_t markDuplicatePairsOpt( ^~~~~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/bambam/DupMarkBase.hpp:79:20: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/StringSerialisation.hpp:30, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentInputCallbackBam.hpp:22, from programs/bammarkduplicatesopt.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor}; _Tp = libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor; _Alloc = std::allocator >::BlockDescriptor>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> >::iterator' {aka '__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::aio::SerialisingSortingBufferedOutput::BlockDescriptor}; _Tp = libmaus2::aio::SerialisingSortingBufferedOutput::BlockDescriptor; _Alloc = std::allocator::BlockDescriptor>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::BlockDescriptor, std::allocator::BlockDescriptor> >::iterator' {aka '__gnu_cxx::__normal_iterator::BlockDescriptor*, std::vector::BlockDescriptor, std::allocator::BlockDescriptor> > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator' {aka '__gnu_cxx::__normal_iterator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function 'static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = libmaus2::bambam::OptName*; order_type = std::less; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::aio::SerialisingSortingBufferedOutput<_data_type, _order_type>::writeBuffer() [with _data_type = libmaus2::bambam::OptName; _order_type = std::less]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function 'static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = OptEntry*; order_type = OptEntryRefRankCmp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::aio::SerialisingSortingBufferedOutput<_data_type, _order_type>::writeBuffer() [with _data_type = OptEntry; _order_type = OptEntryRefRankCmp]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::BlockDescriptor*, std::vector::BlockDescriptor, std::allocator::BlockDescriptor> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicatesopt.cpp:36: /usr/include/libmaus2/bambam/DupMarkBase.hpp: In function 'int markDuplicatesOpt(const libmaus2::util::ArgInfo&)': /usr/include/libmaus2/bambam/DupMarkBase.hpp:272:73: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicatePairsOpt(lfrags_a,lfrags_e,DSC,optminpixeldif,markopt); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicatesopt.cpp:36: /usr/include/libmaus2/bambam/DupMarkBase.hpp:272:73: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicatePairsOpt(lfrags_a,lfrags_e,DSC,optminpixeldif,markopt); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/bambam/DupMarkBase.hpp:457:122: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicateFrags::const_iterator,MarkDuplicateProjectorIdentity>(lfrags.begin(),lfrags.end(),DSC); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StringSerialisation.hpp:27, from /usr/include/libmaus2/bambam/OptName.hpp:23, from /usr/include/libmaus2/bambam/OptNameReader.hpp:21, from programs/bammarkduplicatesopt.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from programs/bammarkduplicatesopt.cpp:36: /usr/include/libmaus2/bambam/DupMarkBase.hpp:457:122: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return markDuplicateFrags::const_iterator,MarkDuplicateProjectorIdentity>(lfrags.begin(),lfrags.end(),DSC); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bammarkduplicatesopt-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bammarkduplicatesopt programs/bammarkduplicatesopt-bammarkduplicatesopt.o biobambam2/bammarkduplicatesopt-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bammarkduplicatesopt programs/bammarkduplicatesopt-bammarkduplicatesopt.o biobambam2/bammarkduplicatesopt-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterlength-bamfilterlength.o `test -f 'programs/bamfilterlength.cpp' || echo './'`programs/bamfilterlength.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamfilterlength.cpp:29: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterlength.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterlength.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterlength-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterlength programs/bamfilterlength-bamfilterlength.o biobambam2/bamfilterlength-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterlength programs/bamfilterlength-bamfilterlength.o biobambam2/bamfilterlength-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamauxmerge-bamauxmerge.o `test -f 'programs/bamauxmerge.cpp' || echo './'`programs/bamauxmerge.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamauxmerge.cpp:40: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamauxmerge.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamauxmerge.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamauxmerge-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamauxmerge programs/bamauxmerge-bamauxmerge.o biobambam2/bamauxmerge-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamauxmerge programs/bamauxmerge-bamauxmerge.o biobambam2/bamauxmerge-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrefinterval-bamrefinterval.o `test -f 'programs/bamrefinterval.cpp' || echo './'`programs/bamrefinterval.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamrefinterval.cpp:19: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamrefinterval.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrefinterval-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrefinterval programs/bamrefinterval-bamrefinterval.o biobambam2/bamrefinterval-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrefinterval programs/bamrefinterval-bamrefinterval.o biobambam2/bamrefinterval-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamscrapcount-bamscrapcount.o `test -f 'programs/bamscrapcount.cpp' || echo './'`programs/bamscrapcount.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamscrapcount.cpp:23: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from programs/bamscrapcount.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function 'int bamscrapcount(const libmaus2::util::ArgInfo&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ programs/bamscrapcount.cpp:96:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamscrapcount-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamscrapcount programs/bamscrapcount-bamscrapcount.o biobambam2/bamscrapcount-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamscrapcount programs/bamscrapcount-bamscrapcount.o biobambam2/bamscrapcount-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilterrefid-bamfilterrefid.o `test -f 'programs/bamfilterrefid.cpp' || echo './'`programs/bamfilterrefid.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterrefid.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterrefid.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterrefid.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterrefid.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfilterrefid.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfilterrefid.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilterrefid-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilterrefid programs/bamfilterrefid-bamfilterrefid.o biobambam2/bamfilterrefid-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilterrefid programs/bamfilterrefid-bamfilterrefid.o biobambam2/bamfilterrefid-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfillquery-bamfillquery.o `test -f 'programs/bamfillquery.cpp' || echo './'`programs/bamfillquery.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamfillquery.cpp:31: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfillquery.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamPeeker.hpp:21, from programs/bamfillquery.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfillquery-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfillquery-AttachRank.o `test -f 'biobambam2/AttachRank.cpp' || echo './'`biobambam2/AttachRank.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfillquery programs/bamfillquery-bamfillquery.o biobambam2/bamfillquery-Licensing.o biobambam2/bamfillquery-AttachRank.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfillquery programs/bamfillquery-bamfillquery.o biobambam2/bamfillquery-Licensing.o biobambam2/bamfillquery-AttachRank.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrefextract-bamrefextract.o `test -f 'programs/bamrefextract.cpp' || echo './'`programs/bamrefextract.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {EElement}; _Tp = EElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamrefextract.cpp:31: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = EElement; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void handle(std::map&, std::vector >&, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrefextract.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor}; _Tp = libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor; _Alloc = std::allocator >::BlockDescriptor>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> >::iterator' {aka '__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator' {aka '__gnu_cxx::__normal_iterator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In static member function 'static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = Element*; order_type = std::less; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::aio::SerialisingSortingBufferedOutput<_data_type, _order_type>::writeBuffer() [with _data_type = Element; _order_type = std::less]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrefextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrefextract programs/bamrefextract-bamrefextract.o biobambam2/bamrefextract-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrefextract programs/bamrefextract-bamrefextract.o biobambam2/bamrefextract-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfilter-bamfilter.o `test -f 'programs/bamfilter.cpp' || echo './'`programs/bamfilter.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/MergeQueueElement.hpp:22, from /usr/include/libmaus2/bambam/CollatingBamDecoder.hpp:22, from programs/bamfilter.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfilter-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfilter programs/bamfilter-bamfilter.o biobambam2/bamfilter-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfilter programs/bamfilter-bamfilter.o biobambam2/bamfilter-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixmatecoordinates-bamfixmatecoordinates.o `test -f 'programs/bamfixmatecoordinates.cpp' || echo './'`programs/bamfixmatecoordinates.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::MergeQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::MergeQueueElement}; _Tp = libmaus2::bambam::MergeQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::MergeQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::CollatingBamDecoder::fillOutputList()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamfixmatecoordinates.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixmatecoordinates-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfixmatecoordinates programs/bamfixmatecoordinates-bamfixmatecoordinates.o biobambam2/bamfixmatecoordinates-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfixmatecoordinates programs/bamfixmatecoordinates-bamfixmatecoordinates.o biobambam2/bamfixmatecoordinates-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o `test -f 'programs/bamfixmatecoordinatesnamesorted.cpp' || echo './'`programs/bamfixmatecoordinatesnamesorted.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamfixmatecoordinatesnamesorted.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfixmatecoordinatesnamesorted programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfixmatecoordinatesnamesorted programs/bamfixmatecoordinatesnamesorted-bamfixmatecoordinatesnamesorted.o biobambam2/bamfixmatecoordinatesnamesorted-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamcheckalignments-bamcheckalignments.o `test -f 'programs/bamcheckalignments.cpp' || echo './'`programs/bamcheckalignments.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamIndexGenerator::binClash(int64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamcheckalignments.cpp:27: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::TerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::fastx::FastAReaderTemplate::RewriteInfo&}; _Tp = libmaus2::fastx::FastAReaderTemplate::RewriteInfo; _Alloc = std::allocator::RewriteInfo>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::RewriteInfo, std::allocator::RewriteInfo> >::iterator' {aka '__gnu_cxx::__normal_iterator::RewriteInfo*, std::vector::RewriteInfo, std::allocator::RewriteInfo> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector::RewriteInfo> libmaus2::fastx::FastAReaderTemplate<_reader_base_type>::rewriteFilesToBuffer(const std::vector >&, buffer_type&) [with buffer_type = libmaus2::aio::SynchronousGenericOutput; _reader_base_type = libmaus2::aio::SynchronousFastReaderBase]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::RewriteInfo*, std::vector::RewriteInfo, std::allocator::RewriteInfo> > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void* libmaus2::lz::BgzfDeflateParallelThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamcheckalignments.cpp:31: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'bool libmaus2::bambam::BamRangeDecoder::setup()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamcheckalignments.cpp:27: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/ArgInfo.hpp:25, from programs/bamcheckalignments.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamcheckalignments-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamcheckalignments programs/bamcheckalignments-bamcheckalignments.o biobambam2/bamcheckalignments-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamcheckalignments programs/bamcheckalignments-bamcheckalignments.o biobambam2/bamcheckalignments-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamtoname-bamtoname.o `test -f 'programs/bamtoname.cpp' || echo './'`programs/bamtoname.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator' {aka '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:26, from programs/bamtoname.cpp:27: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamtoname.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamtoname.cpp:27: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamtoname-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamtoname programs/bamtoname-bamtoname.o biobambam2/bamtoname-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamtoname programs/bamtoname-bamtoname.o biobambam2/bamtoname-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamdisthist-bamdisthist.o `test -f 'programs/bamdisthist.cpp' || echo './'`programs/bamdisthist.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdisthist.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamdisthist.cpp:27: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamdisthist.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from ./biobambam2/Licensing.hpp:24, from programs/bamdisthist.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from ./biobambam2/Licensing.hpp:24, from programs/bamdisthist.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'void libmaus2::util::Histogram::operator()(uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'void DepthHist::handleD()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdisthist.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamdisthist.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamdisthist.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdisthist.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::SnappyAlignmentMergeInput::SnappyAlignmentMergeInput(const std::vector >&, const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdisthist.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator' {aka '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamdisthist.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamdisthist.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdisthist.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdisthist.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamdisthist.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdisthist.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::BamAlignmentSortingCircularHashEntryOverflow::flush()': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from ./biobambam2/Licensing.hpp:23, from programs/bamdisthist.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'libmaus2::bambam::CircularHashCollatingBamDecoder::OutputBufferEntry* libmaus2::bambam::CircularHashCollatingBamDecoder::process()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentFilter.hpp:22, from /usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from programs/bamdisthist.cpp:27: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from ./biobambam2/Licensing.hpp:23, from programs/bamdisthist.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamdisthist-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamdisthist programs/bamdisthist-bamdisthist.o biobambam2/bamdisthist-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamdisthist programs/bamdisthist-bamdisthist.o biobambam2/bamdisthist-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrefdepth-bamrefdepth.o `test -f 'programs/bamrefdepth.cpp' || echo './'`programs/bamrefdepth.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamrefdepth.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/util/ArgInfo.hpp:24, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamrefdepth.cpp:26: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrefdepth.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/util/ArgInfo.hpp:35, from programs/bamrefdepth.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamrefdepth.cpp:25: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrefdepth-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrefdepth programs/bamrefdepth-bamrefdepth.o biobambam2/bamrefdepth-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrefdepth programs/bamrefdepth-bamrefdepth.o biobambam2/bamrefdepth-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/fastabgzfextract-fastabgzfextract.o `test -f 'programs/fastabgzfextract.cpp' || echo './'`programs/fastabgzfextract.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/fastabgzfextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/fastabgzfextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/fastabgzfextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/fastabgzfextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/fastabgzfextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/fastabgzfextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/fastabgzfextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/fastabgzfextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o fastabgzfextract programs/fastabgzfextract-fastabgzfextract.o biobambam2/fastabgzfextract-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastabgzfextract programs/fastabgzfextract-fastabgzfextract.o biobambam2/fastabgzfextract-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamparsort-bamparsort.o `test -f 'programs/bamparsort.cpp' || echo './'`programs/bamparsort.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamparsort.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamparsort.cpp:21: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamThreadPoolDecodeBamParseQueueInfo&}; _Tp = BamThreadPoolDecodeBamParseQueueInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = BamThreadPoolDecodeBamParseQueueInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = BamThreadPoolDecodeBamParseQueueInfo; _Sequence = std::vector >; _Compare = std::less]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = BamThreadPoolMergeWritePendingInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamThreadPoolMergeProcessBufferInfo&}; _Tp = BamThreadPoolMergeProcessBufferInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = BamThreadPoolMergeProcessBufferInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void BamThreadPoolDecodeDecompressPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void BamThreadPoolDecodeDecompressPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = BamThreadPoolMergeWritePendingInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void BamThreadPoolMergeProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void BamThreadPoolMergeProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamparsort.cpp:20: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void BamThreadPoolDecodeBamProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::ParallelStableSort::MergeLevel}; _Tp = libmaus2::sorting::ParallelStableSort::MergeLevel; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void BamThreadPoolDecodeBamProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamparsort-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamparsort programs/bamparsort-bamparsort.o biobambam2/bamparsort-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamparsort programs/bamparsort-bamparsort.o biobambam2/bamparsort-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamheap-bamheap.o `test -f 'programs/bamheap.cpp' || echo './'`programs/bamheap.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2489:5: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void libmaus2::parallel::SimpleThreadPool::setTaskId(uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2414:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'virtual void* libmaus2::parallel::SimpleThreadPoolThread::run()': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __equal_range(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In constructor 'libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60, from /usr/include/libmaus2/serialize/Serialize.hpp:25, from /usr/include/libmaus2/autoarray/AutoArray.hpp:27, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:1144:2: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator > >'} changed in GCC 7.1 _M_erase_aux(__position); ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:2228:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return std::__equal_range(__first, __last, __val, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__iter_comp_val(__comp), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __gnu_cxx::__ops::__val_comp_iter(__comp)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamCatHeader.hpp:26, from /usr/include/libmaus2/bambam/BamMergeCoordinate.hpp:22, from /usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from programs/bamheap.cpp:20: /usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp:278:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In constructor 'libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/bambam/DecoderBase.hpp:23, from /usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from /usr/include/libmaus2/bambam/CigarDecoder.hpp:21, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from /usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp:22, from /usr/include/libmaus2/bambam/BamDecoder.hpp:22, from programs/bamheap.cpp:19: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamheap-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamheap programs/bamheap-bamheap.o biobambam2/bamheap-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamheap programs/bamheap-bamheap.o biobambam2/bamheap-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamfrontback-bamfrontback.o `test -f 'programs/bamfrontback.cpp' || echo './'`programs/bamfrontback.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfrontback.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfrontback.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfrontback.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfrontback.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamfrontback.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamfrontback.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfrontback-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamfrontback-ResetAlignment.o `test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamfrontback programs/bamfrontback-bamfrontback.o biobambam2/bamfrontback-Licensing.o biobambam2/bamfrontback-ResetAlignment.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamfrontback programs/bamfrontback-bamfrontback.o biobambam2/bamfrontback-Licensing.o biobambam2/bamfrontback-ResetAlignment.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamclipextract-bamclipextract.o `test -f 'programs/bamclipextract.cpp' || echo './'`programs/bamclipextract.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamclipextract.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamclipextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamclipextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamclipextract.cpp:24: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamclipextract.cpp:24: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamclipextract.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamclipextract-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamclipextract-ResetAlignment.o `test -f 'biobambam2/ResetAlignment.cpp' || echo './'`biobambam2/ResetAlignment.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamclipextract programs/bamclipextract-bamclipextract.o biobambam2/bamclipextract-Licensing.o biobambam2/bamclipextract-ResetAlignment.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamclipextract programs/bamclipextract-bamclipextract.o biobambam2/bamclipextract-Licensing.o biobambam2/bamclipextract-ResetAlignment.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamalignmentoffsets-bamalignmentoffsets.o `test -f 'programs/bamalignmentoffsets.cpp' || echo './'`programs/bamalignmentoffsets.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamalignmentoffsets.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamalignmentoffsets.cpp:28: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamalignmentoffsets.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamalignmentoffsets.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamalignmentoffsets.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamalignmentoffsets.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamalignmentoffsets.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamalignmentoffsets.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'void libmaus2::trie::LinearHashTrie<_char_type, _id_type>::fillDepthParent() [with _char_type = char; _id_type = unsigned int]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/lz/StreamWrapperBuffer.hpp:23, from /usr/include/libmaus2/lz/StreamWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInput.hpp:41, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamalignmentoffsets.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamalignmentoffsets.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamalignmentoffsets.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from /usr/include/libmaus2/bambam/BamWriter.hpp:22, from /usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from programs/bamalignmentoffsets.cpp:28: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/include/libmaus2/util/StackTrace.hpp:32, from /usr/include/libmaus2/exception/LibMausException.hpp:25, from /usr/include/libmaus2/aio/PosixFdInput.hpp:40, from /usr/include/libmaus2/aio/PosixFdInputWrapper.hpp:22, from /usr/include/libmaus2/aio/PosixFdInputStream.hpp:22, from programs/bamalignmentoffsets.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamalignmentoffsets-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamalignmentoffsets programs/bamalignmentoffsets-bamalignmentoffsets.o biobambam2/bamalignmentoffsets-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamalignmentoffsets programs/bamalignmentoffsets-bamalignmentoffsets.o biobambam2/bamalignmentoffsets-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o programs/bamrandomtag-bamrandomtag.o `test -f 'programs/bamrandomtag.cpp' || echo './'`programs/bamrandomtag.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrandomtag.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrandomtag.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In constructor 'libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) ^~~~~~~~~~~~~~~~~~ /usr/include/libmaus2/hashing/ConstantStringHash.hpp:96:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrandomtag.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::trie::LinearTrieStateBase}; _Tp = libmaus2::trie::LinearTrieStateBase; _Alloc = std::allocator >]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrandomtag.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrandomtag.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In static member function 'static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In constructor 'libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/queue:62, from programs/bamrandomtag.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrandomtag.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrandomtag.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from /usr/arm-linux-gnueabihf/include/c++/8/queue:61, from programs/bamrandomtag.cpp:22: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from /usr/include/libmaus2/autoarray/AutoArray.hpp:24, from /usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrandomtag.cpp:26: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/libmaus2/bambam/BamHeader.hpp:35, from /usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from /usr/include/libmaus2/bambam/BamAlignment.hpp:24, from programs/bamrandomtag.cpp:26: /usr/include/libmaus2/hashing/ConstantStringHash.hpp: In member function 'void libmaus2::bambam::BamHeader::initSetup()': /usr/include/libmaus2/hashing/ConstantStringHash.hpp:86:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 shared_ptr_type s(new this_type(ita,ite,maxn)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o biobambam2/bamrandomtag-Licensing.o `test -f 'biobambam2/Licensing.cpp' || echo './'`biobambam2/Licensing.cpp /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z,relro -Wl,-z,now -o bamrandomtag programs/bamrandomtag-bamrandomtag.o biobambam2/bamrandomtag-Licensing.o -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -fopenmp -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -L/usr/lib/arm-linux-gnueabihf -lmaus2digests -lmaus2digests_sse4 -lz libtool: link: arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -fopenmp -std=gnu++0x -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bamrandomtag programs/bamrandomtag-bamrandomtag.o biobambam2/bamrandomtag-Licensing.o -fopenmp -L/usr/lib/arm-linux-gnueabihf -lmaus2 -lmaus2_simd_align_128 -lmaus2_simd_align_256 -ldl -lmaus2seqchksumsfactory -lmaus2digests -lmaus2digests_sse4 -lz -fopenmp make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/biobambam2 AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/biobambam2/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c bamtofastq bammarkduplicates bamsort bamcollate bammaskflags bamrecompress bamadapterfind bamfilteraux bamauxsort bamadapterclip bamcollate2 bam12auxmerge bam12split bam12strip bamreset bamrank bamclipreinsert bamzztoname kmerprob bamindex bamfilterflags bamfilterrg bamdownsamplerandom bammarkduplicates2 bamcat bammerge bamsplit bamsplitdiv bamchecksort fastqtobam bamfixmateinformation bamseqchksum normalisefasta bamfilterheader bamfilterheader2 bammdnm bammapdist bamvalidate bamflagsplit bamintervalcomment bamintervalcommenthist bamstreamingmarkduplicates bamheap2 bamalignfrac bamlastfilter bamfilternames bamsormadup bamexplode fastqtobampar bamranksort fastqtobampar lasToBAM bamtagconversion fastaexplode bamrecalculatecigar filtersam bamfiltermc bamnumericalindex bammarkduplicatesopt bamfilterlength bamauxmerge bamrefinterval bamscrapcount bamfilterrefid bamfillquery bamrefextract '/<>/debian/biobambam2/usr/bin' libtool: install: /usr/bin/install -c bamtofastq /<>/debian/biobambam2/usr/bin/bamtofastq libtool: install: /usr/bin/install -c bammarkduplicates /<>/debian/biobambam2/usr/bin/bammarkduplicates libtool: install: /usr/bin/install -c bamsort /<>/debian/biobambam2/usr/bin/bamsort libtool: install: /usr/bin/install -c bamcollate /<>/debian/biobambam2/usr/bin/bamcollate libtool: install: /usr/bin/install -c bammaskflags /<>/debian/biobambam2/usr/bin/bammaskflags libtool: install: /usr/bin/install -c bamrecompress /<>/debian/biobambam2/usr/bin/bamrecompress libtool: install: /usr/bin/install -c bamadapterfind /<>/debian/biobambam2/usr/bin/bamadapterfind libtool: install: /usr/bin/install -c bamfilteraux /<>/debian/biobambam2/usr/bin/bamfilteraux libtool: install: /usr/bin/install -c bamauxsort /<>/debian/biobambam2/usr/bin/bamauxsort libtool: install: /usr/bin/install -c bamadapterclip /<>/debian/biobambam2/usr/bin/bamadapterclip libtool: install: /usr/bin/install -c bamcollate2 /<>/debian/biobambam2/usr/bin/bamcollate2 libtool: install: /usr/bin/install -c bam12auxmerge /<>/debian/biobambam2/usr/bin/bam12auxmerge libtool: install: /usr/bin/install -c bam12split /<>/debian/biobambam2/usr/bin/bam12split libtool: install: /usr/bin/install -c bam12strip /<>/debian/biobambam2/usr/bin/bam12strip libtool: install: /usr/bin/install -c bamreset /<>/debian/biobambam2/usr/bin/bamreset libtool: install: /usr/bin/install -c bamrank /<>/debian/biobambam2/usr/bin/bamrank libtool: install: /usr/bin/install -c bamclipreinsert /<>/debian/biobambam2/usr/bin/bamclipreinsert libtool: install: /usr/bin/install -c bamzztoname /<>/debian/biobambam2/usr/bin/bamzztoname libtool: install: /usr/bin/install -c kmerprob /<>/debian/biobambam2/usr/bin/kmerprob libtool: install: /usr/bin/install -c bamindex /<>/debian/biobambam2/usr/bin/bamindex libtool: install: /usr/bin/install -c bamfilterflags /<>/debian/biobambam2/usr/bin/bamfilterflags libtool: install: /usr/bin/install -c bamfilterrg /<>/debian/biobambam2/usr/bin/bamfilterrg libtool: install: /usr/bin/install -c bamdownsamplerandom /<>/debian/biobambam2/usr/bin/bamdownsamplerandom libtool: install: /usr/bin/install -c bammarkduplicates2 /<>/debian/biobambam2/usr/bin/bammarkduplicates2 libtool: install: /usr/bin/install -c bamcat /<>/debian/biobambam2/usr/bin/bamcat libtool: install: /usr/bin/install -c bammerge /<>/debian/biobambam2/usr/bin/bammerge libtool: install: /usr/bin/install -c bamsplit /<>/debian/biobambam2/usr/bin/bamsplit libtool: install: /usr/bin/install -c bamsplitdiv /<>/debian/biobambam2/usr/bin/bamsplitdiv libtool: install: /usr/bin/install -c bamchecksort /<>/debian/biobambam2/usr/bin/bamchecksort libtool: install: /usr/bin/install -c fastqtobam /<>/debian/biobambam2/usr/bin/fastqtobam libtool: install: /usr/bin/install -c bamfixmateinformation /<>/debian/biobambam2/usr/bin/bamfixmateinformation libtool: install: /usr/bin/install -c bamseqchksum /<>/debian/biobambam2/usr/bin/bamseqchksum libtool: install: /usr/bin/install -c normalisefasta /<>/debian/biobambam2/usr/bin/normalisefasta libtool: install: /usr/bin/install -c bamfilterheader /<>/debian/biobambam2/usr/bin/bamfilterheader libtool: install: /usr/bin/install -c bamfilterheader2 /<>/debian/biobambam2/usr/bin/bamfilterheader2 libtool: install: /usr/bin/install -c bammdnm /<>/debian/biobambam2/usr/bin/bammdnm libtool: install: /usr/bin/install -c bammapdist /<>/debian/biobambam2/usr/bin/bammapdist libtool: install: /usr/bin/install -c bamvalidate /<>/debian/biobambam2/usr/bin/bamvalidate libtool: install: /usr/bin/install -c bamflagsplit /<>/debian/biobambam2/usr/bin/bamflagsplit libtool: install: /usr/bin/install -c bamintervalcomment /<>/debian/biobambam2/usr/bin/bamintervalcomment libtool: install: /usr/bin/install -c bamintervalcommenthist /<>/debian/biobambam2/usr/bin/bamintervalcommenthist libtool: install: /usr/bin/install -c bamstreamingmarkduplicates /<>/debian/biobambam2/usr/bin/bamstreamingmarkduplicates libtool: install: /usr/bin/install -c bamheap2 /<>/debian/biobambam2/usr/bin/bamheap2 libtool: install: /usr/bin/install -c bamalignfrac /<>/debian/biobambam2/usr/bin/bamalignfrac libtool: install: /usr/bin/install -c bamlastfilter /<>/debian/biobambam2/usr/bin/bamlastfilter libtool: install: /usr/bin/install -c bamfilternames /<>/debian/biobambam2/usr/bin/bamfilternames libtool: install: /usr/bin/install -c bamsormadup /<>/debian/biobambam2/usr/bin/bamsormadup libtool: install: /usr/bin/install -c bamexplode /<>/debian/biobambam2/usr/bin/bamexplode libtool: install: /usr/bin/install -c fastqtobampar /<>/debian/biobambam2/usr/bin/fastqtobampar libtool: install: /usr/bin/install -c bamranksort /<>/debian/biobambam2/usr/bin/bamranksort libtool: install: /usr/bin/install -c fastqtobampar /<>/debian/biobambam2/usr/bin/fastqtobampar libtool: install: /usr/bin/install -c lasToBAM /<>/debian/biobambam2/usr/bin/lasToBAM libtool: install: /usr/bin/install -c bamtagconversion /<>/debian/biobambam2/usr/bin/bamtagconversion libtool: install: /usr/bin/install -c fastaexplode /<>/debian/biobambam2/usr/bin/fastaexplode libtool: install: /usr/bin/install -c bamrecalculatecigar /<>/debian/biobambam2/usr/bin/bamrecalculatecigar libtool: install: /usr/bin/install -c filtersam /<>/debian/biobambam2/usr/bin/filtersam libtool: install: /usr/bin/install -c bamfiltermc /<>/debian/biobambam2/usr/bin/bamfiltermc libtool: install: /usr/bin/install -c bamnumericalindex /<>/debian/biobambam2/usr/bin/bamnumericalindex libtool: install: /usr/bin/install -c bammarkduplicatesopt /<>/debian/biobambam2/usr/bin/bammarkduplicatesopt libtool: install: /usr/bin/install -c bamfilterlength /<>/debian/biobambam2/usr/bin/bamfilterlength libtool: install: /usr/bin/install -c bamauxmerge /<>/debian/biobambam2/usr/bin/bamauxmerge libtool: install: /usr/bin/install -c bamrefinterval /<>/debian/biobambam2/usr/bin/bamrefinterval libtool: install: /usr/bin/install -c bamscrapcount /<>/debian/biobambam2/usr/bin/bamscrapcount libtool: install: /usr/bin/install -c bamfilterrefid /<>/debian/biobambam2/usr/bin/bamfilterrefid libtool: install: /usr/bin/install -c bamfillquery /<>/debian/biobambam2/usr/bin/bamfillquery libtool: install: /usr/bin/install -c bamrefextract /<>/debian/biobambam2/usr/bin/bamrefextract /bin/mkdir -p '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/bamtofastq.1 programs/bamsort.1 programs/bammarkduplicates.1 programs/bammarkduplicatesopt.1 programs/bamcollate.1 programs/bammaskflags.1 programs/bamrecompress.1 programs/bamadapterfind.1 programs/bamfilteraux.1 programs/bamauxsort.1 programs/bamadapterclip.1 programs/bamcollate2.1 programs/bam12auxmerge.1 programs/bam12split.1 programs/bam12strip.1 programs/bamreset.1 programs/bamrank.1 programs/bamclipreinsert.1 programs/bamzztoname.1 programs/bamindex.1 programs/bamfilterflags.1 programs/bamfilterrg.1 programs/bamdownsamplerandom.1 programs/bammarkduplicates2.1 programs/bamcat.1 programs/bammerge.1 programs/bamsplit.1 programs/bamsplitdiv.1 programs/bamchecksort.1 programs/fastqtobam.1 programs/bamfixmateinformation.1 programs/normalisefasta.1 programs/bamfilterheader.1 programs/bamfilterheader2.1 programs/bammdnm.1 programs/bamseqchksum.1 programs/bamvalidate.1 programs/bamflagsplit.1 programs/bamintervalcomment.1 programs/bamstreamingmarkduplicates.1 '/<>/debian/biobambam2/usr/share/man/man1' /usr/bin/install -c -m 644 programs/bamsormadup.1 programs/lasToBAM.1 programs/fastaexplode.1 programs/bamrecalculatecigar.1 programs/bamfiltermc.1 programs/bamfillquery.1 '/<>/debian/biobambam2/usr/share/man/man1' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bammaskflags contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bam12strip contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamsormadup contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamtagconversion contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bammapdist contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bam12split contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamfilteraux contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamrecompress contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamnumericalindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamcollate2 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bammarkduplicatesopt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamseqchksum contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamreset contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/normalisefasta contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamfilterrg contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bammarkduplicates contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/fastqtobam contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bammarkduplicates2 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamchecksort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamheap2 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamfilterheader2 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamsplit contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamsplitdiv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamstreamingmarkduplicates contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamlastfilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamtofastq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/lasToBAM contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamauxmerge contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/kmerprob contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamalignfrac contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamfilterlength contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/fastaexplode contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamrank contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamvalidate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamintervalcomment contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamflagsplit contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamfillquery contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamadapterclip contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamexplode contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamfilterheader contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamauxsort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamintervalcommenthist contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamcollate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/filtersam contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamfiltermc contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamrecalculatecigar contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamscrapcount contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamfilterrefid contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamrefextract contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamranksort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bammdnm contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamcat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamclipreinsert contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamfilternames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamadapterfind contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamrefinterval contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamfixmateinformation contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamdownsamplerandom contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamsort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bammerge contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamfilterflags contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/fastqtobampar contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bam12auxmerge contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/biobambam2/usr/bin/bamzztoname contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamtagconversion debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamheap2 debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamlastfilter debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/lasToBAM debian/biobambam2/usr/bin/bamauxmerge debian/biobambam2/usr/bin/kmerprob debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/fastaexplode debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bamcollate debian/biobambam2/usr/bin/filtersam debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/fastqtobampar debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamzztoname were not linked against libz.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamtagconversion debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamheap2 debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamlastfilter debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/lasToBAM debian/biobambam2/usr/bin/bamauxmerge debian/biobambam2/usr/bin/kmerprob debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/fastaexplode debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bamcollate debian/biobambam2/usr/bin/filtersam debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/fastqtobampar debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamzztoname were not linked against libdl.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamtagconversion debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamheap2 debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamlastfilter debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/lasToBAM debian/biobambam2/usr/bin/bamauxmerge debian/biobambam2/usr/bin/kmerprob debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/fastaexplode debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bamcollate debian/biobambam2/usr/bin/filtersam debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/fastqtobampar debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamzztoname were not linked against libmaus2_simd_align_128.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/biobambam2/usr/bin/bammaskflags debian/biobambam2/usr/bin/bam12strip debian/biobambam2/usr/bin/bamsormadup debian/biobambam2/usr/bin/bamtagconversion debian/biobambam2/usr/bin/bammapdist debian/biobambam2/usr/bin/bam12split debian/biobambam2/usr/bin/bamfilteraux debian/biobambam2/usr/bin/bamrecompress debian/biobambam2/usr/bin/bamnumericalindex debian/biobambam2/usr/bin/bamcollate2 debian/biobambam2/usr/bin/bammarkduplicatesopt debian/biobambam2/usr/bin/bamseqchksum debian/biobambam2/usr/bin/bamreset debian/biobambam2/usr/bin/normalisefasta debian/biobambam2/usr/bin/bamfilterrg debian/biobambam2/usr/bin/bammarkduplicates debian/biobambam2/usr/bin/fastqtobam debian/biobambam2/usr/bin/bammarkduplicates2 debian/biobambam2/usr/bin/bamchecksort debian/biobambam2/usr/bin/bamheap2 debian/biobambam2/usr/bin/bamfilterheader2 debian/biobambam2/usr/bin/bamsplit debian/biobambam2/usr/bin/bamsplitdiv debian/biobambam2/usr/bin/bamstreamingmarkduplicates debian/biobambam2/usr/bin/bamlastfilter debian/biobambam2/usr/bin/bamtofastq debian/biobambam2/usr/bin/lasToBAM debian/biobambam2/usr/bin/bamauxmerge debian/biobambam2/usr/bin/kmerprob debian/biobambam2/usr/bin/bamalignfrac debian/biobambam2/usr/bin/bamfilterlength debian/biobambam2/usr/bin/fastaexplode debian/biobambam2/usr/bin/bamrank debian/biobambam2/usr/bin/bamvalidate debian/biobambam2/usr/bin/bamintervalcomment debian/biobambam2/usr/bin/bamflagsplit debian/biobambam2/usr/bin/bamfillquery debian/biobambam2/usr/bin/bamadapterclip debian/biobambam2/usr/bin/bamexplode debian/biobambam2/usr/bin/bamfilterheader debian/biobambam2/usr/bin/bamauxsort debian/biobambam2/usr/bin/bamintervalcommenthist debian/biobambam2/usr/bin/bamcollate debian/biobambam2/usr/bin/filtersam debian/biobambam2/usr/bin/bamfiltermc debian/biobambam2/usr/bin/bamrecalculatecigar debian/biobambam2/usr/bin/bamscrapcount debian/biobambam2/usr/bin/bamfilterrefid debian/biobambam2/usr/bin/bamrefextract debian/biobambam2/usr/bin/bamranksort debian/biobambam2/usr/bin/bammdnm debian/biobambam2/usr/bin/bamcat debian/biobambam2/usr/bin/bamclipreinsert debian/biobambam2/usr/bin/bamfilternames debian/biobambam2/usr/bin/bamadapterfind debian/biobambam2/usr/bin/bamrefinterval debian/biobambam2/usr/bin/bamfixmateinformation debian/biobambam2/usr/bin/bamdownsamplerandom debian/biobambam2/usr/bin/bamsort debian/biobambam2/usr/bin/bammerge debian/biobambam2/usr/bin/bamfilterflags debian/biobambam2/usr/bin/bamindex debian/biobambam2/usr/bin/fastqtobampar debian/biobambam2/usr/bin/bam12auxmerge debian/biobambam2/usr/bin/bamzztoname were not linked against libmaus2_simd_align_256.so.2 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'biobambam2' in '../biobambam2_2.0.95-1_armhf.deb'. dpkg-deb: building package 'biobambam2-dbgsym' in '../biobambam2-dbgsym_2.0.95-1_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../biobambam2_2.0.95-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-08-06T13:14:13Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-xmCcLz/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-biobambam2-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-xmCcLz/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xmCcLz/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-xmCcLz/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xmCcLz/apt_archive ./ Sources [774 B] Get:5 copy:/<>/resolver-xmCcLz/apt_archive ./ Packages [851 B] Fetched 2588 B in 0s (139 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparams-classify-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libhtml-template-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparams-classify-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armhf t1utils 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 8434 kB of archives. After this operation, 22.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-xmCcLz/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-2 [72.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-2 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-1 [645 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1 [320 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.79+repack-2 [34.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.16.0 [1189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8434 kB in 0s (30.2 MB/s) Selecting previously unselected package readline-common. (Reading database ... 19546 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-2_all.deb ... Unpacking readline-common (8.0-2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-2_amd64.deb ... Unpacking libreadline8:amd64 (8.0-2) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.29.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.29.0-1) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.17-3_amd64.deb ... Unpacking gpg (2.2.17-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.36+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../10-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../11-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../12-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../13-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../14-libcgi-pm-perl_4.44-1_all.deb ... Unpacking libcgi-pm-perl (4.44-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../15-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../16-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../17-libclass-method-modifiers-perl_2.12-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.12-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../18-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../19-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../20-libdevel-callchecker-perl_0.008-1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../21-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../22-libdevel-globaldestruction-perl_0.14-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ biobambam2_2.0.95-1_armhf.changes: ---------------------------------- Format: 1.8 Date: Sat, 13 Apr 2019 07:15:32 +0200 Source: biobambam2 Binary: biobambam2 biobambam2-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 2.0.95-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: biobambam2 - tools for early stage alignment file processing Closes: 926978 Changes: biobambam2 (2.0.95-1) unstable; urgency=medium . * Initial release (Closes: #926978) Checksums-Sha1: a66450ed082b5a7437aecb77f556124775e35fdf 122130472 biobambam2-dbgsym_2.0.95-1_armhf.deb 355e7fc4e0b5ae86f3931afe897aab61c3214eb2 4713 biobambam2_2.0.95-1_armhf.buildinfo 9bba6b8261c54c02e28cebc4975727dd7e92d981 3986432 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biobambam2-dbgsym_2.0.95-1_armhf.deb c162da081dd282c192d157e90fecd1e3 3986432 biobambam2_2.0.95-1_armhf.deb Checksums-Sha1: a66450ed082b5a7437aecb77f556124775e35fdf 122130472 biobambam2-dbgsym_2.0.95-1_armhf.deb 9bba6b8261c54c02e28cebc4975727dd7e92d981 3986432 biobambam2_2.0.95-1_armhf.deb Checksums-Sha256: 2578f88d5cf1a48b2b7b6f3811d4a08eaf83a2a6358312fc2cba4fdb25448843 122130472 biobambam2-dbgsym_2.0.95-1_armhf.deb f415dbbf16bd67c8159bee662188142359df87c76600f5e33fecff3cac916abc 3986432 biobambam2_2.0.95-1_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 06 Aug 2019 13:14:11 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190727-1), binutils-common (= 2.32.51.20190727-1), binutils-x86-64-linux-gnu (= 2.32.51.20190727-1), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9.2), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-19), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.2.3), debianutils (= 4.8.6.3), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.4.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.12.20190723-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.6.0+git+20190510-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-19), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-19), gcc-8-base (= 8.3.0-19), gcc-9-base (= 9.1.0-10), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 9.1.0-10), libatomic1 (= 9.1.0-10), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.32.51.20190727-1), libblkid1 (= 2.34-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9.2), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 9.1.0-10), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.4.0-1), libgcc-8-dev (= 8.3.0-19), libgcc1 (= 1:9.1.0-10), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4+b1), libgdbm6 (= 1.18.1-4+b1), libglib2.0-0 (= 2.60.6-1), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.1.0-10), libgpg-error0 (= 1.36-7), libicu63 (= 63.2-2), libisl19 (= 0.20-2), libitm1 (= 9.1.0-10), liblsan0 (= 9.1.0-10), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmaus2-2 (= 2.0.611-1), libmaus2-dev (= 2.0.611-1), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-19), libncurses6 (= 6.1+20190713-2), libncursesw6 (= 6.1+20190713-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libquadmath0 (= 9.1.0-10), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-8-dev (= 8.3.0-19), libstdc++6 (= 9.1.0-10), libsub-override-perl (= 0.09-2), libsystemd0 (= 241-7), libtinfo6 (= 6.1+20190713-2), libtool (= 2.4.6-10), libtsan0 (= 9.1.0-10), libubsan1 (= 9.1.0-10), libuchardet0 (= 0.0.6-3), libudev1 (= 241-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 4.19.37-6), login (= 1:4.7-2), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.6.1-1), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190713-2), ncurses-bin (= 6.1+20190713-2), patch (= 2.7.6-6), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), pkg-config (= 0.29-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.95-4), tar (= 1.30+dfsg-6), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1), zlib1g-dev (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1555132532" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ biobambam2-dbgsym_2.0.95-1_armhf.deb ------------------------------------ new Debian package, version 2.0. size 122130472 bytes: control archive=3504 bytes. 3011 bytes, 12 lines control 6980 bytes, 66 lines md5sums Package: biobambam2-dbgsym Source: biobambam2 Version: 2.0.95-1 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 130635 Depends: biobambam2 (= 2.0.95-1) Section: debug Priority: optional Description: debug symbols for biobambam2 Build-Ids: 02f0fd7c93094b9e391c72fea9d74578f36e2f7f 046b8b931147307e499b6fb233e9f02f2f5819ee 090e8c64095ec91b4bf26b9fca9eb70089c463e8 11a6dd6e6df8f64a086c41812cc923965cd857f3 1250352057844acbf64c56ce3474bf7ea0294d18 162b05649554b3a4a5e5dcd43074ab0ed0d0be1e 16ee12aa82d8c090ca2b7e2faf188c6c3efc4612 22552e572e7e65a1e1bd8f0019341f1a5c2be7c8 24c4b17cf3e5266bde66ab2979a092d81d4d8d95 2684a217fd49b0908a08d1d01c5549ddd72e2cca 2e233ce45dae57796ee6bd62d24ebab88f93807c 303d0f0f995b5f92e3849277619ac4969c79b035 34db9ddce0dd71e6cfc3d566afe373bebd484d52 41059b324e888d8c15f5226184e736686b91549d 475187b71b853405b7b9fcb8b021190691f3a4f3 47adaebc4e4aff3d8a4d983ee07996402570865c 484e482cef0d29716f34cb3e08e2f10c83d26967 4a7f71a4757adeb868934b96436d9d9bf75e79d8 4cd3f48899eda836b0ca55bb080e7475a3605da0 4d566f835a5781a2e53cdab30a0b91cb3a283e2f 55df7a2224c72c2cbd9b3d4968f6713f2e73875c 55f8bb00d7da2a9649a2aa9fdf8b5f1f51bbf1eb 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1552136 2019-04-13 05:15 ./usr/lib/debug/.build-id/f4/4b1bcf7fbe4c821f580bff180cc537d55cba76.debug drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/lib/debug/.build-id/f5/ -rw-r--r-- root/root 1392800 2019-04-13 05:15 ./usr/lib/debug/.build-id/f5/d5f426e57e87440253781c2c499a1fcdbdee2c.debug drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 3206640 2019-04-13 05:15 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/biobambam2.debug drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/share/ drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-04-13 05:15 ./usr/share/doc/biobambam2-dbgsym -> biobambam2 biobambam2_2.0.95-1_armhf.deb ----------------------------- new Debian package, version 2.0. size 3986432 bytes: control archive=3708 bytes. 1277 bytes, 25 lines control 7121 bytes, 114 lines md5sums Package: biobambam2 Version: 2.0.95-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 22081 Depends: libc6 (>= 2.7), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libmaus2-2 (>= 2.0.611), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://gitlab.com/german.tischler/biobambam2 Description: tools for early stage alignment file processing This package contains some tools for processing BAM files including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name drwxr-xr-x root/root 0 2019-04-13 05:15 ./ drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/ drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/bin/ -rwxr-xr-x root/root 243364 2019-04-13 05:15 ./usr/bin/bam12auxmerge -rwxr-xr-x root/root 202404 2019-04-13 05:15 ./usr/bin/bam12split -rwxr-xr-x root/root 206500 2019-04-13 05:15 ./usr/bin/bam12strip -rwxr-xr-x root/root 214692 2019-04-13 05:15 ./usr/bin/bamadapterclip -rwxr-xr-x root/root 476956 2019-04-13 05:15 ./usr/bin/bamadapterfind -rwxr-xr-x root/root 329484 2019-04-13 05:15 ./usr/bin/bamalignfrac -rwxr-xr-x root/root 435996 2019-04-13 05:15 ./usr/bin/bamauxmerge -rwxr-xr-x root/root 206500 2019-04-13 05:15 ./usr/bin/bamauxsort -rwxr-xr-x root/root 395036 2019-04-13 05:15 ./usr/bin/bamcat -rwxr-xr-x root/root 108180 2019-04-13 05:15 ./usr/bin/bamchecksort -rwxr-xr-x root/root 218788 2019-04-13 05:15 ./usr/bin/bamclipreinsert -rwxr-xr-x root/root 235172 2019-04-13 05:15 ./usr/bin/bamcollate -rwxr-xr-x root/root 530204 2019-04-13 05:15 ./usr/bin/bamcollate2 -rwxr-xr-x root/root 485148 2019-04-13 05:15 ./usr/bin/bamdownsamplerandom -rwxr-xr-x root/root 370444 2019-04-13 05:15 ./usr/bin/bamexplode -rwxr-xr-x root/root 440092 2019-04-13 05:15 ./usr/bin/bamfillquery -rwxr-xr-x root/root 206500 2019-04-13 05:15 ./usr/bin/bamfilteraux -rwxr-xr-x root/root 239268 2019-04-13 05:15 ./usr/bin/bamfilterflags -rwxr-xr-x root/root 435996 2019-04-13 05:15 ./usr/bin/bamfilterheader -rwxr-xr-x root/root 140948 2019-04-13 05:15 ./usr/bin/bamfilterheader2 -rwxr-xr-x root/root 423708 2019-04-13 05:15 ./usr/bin/bamfilterlength -rwxr-xr-x root/root 427804 2019-04-13 05:15 ./usr/bin/bamfiltermc -rwxr-xr-x root/root 202404 2019-04-13 05:15 ./usr/bin/bamfilternames -rwxr-xr-x root/root 206500 2019-04-13 05:15 ./usr/bin/bamfilterrefid -rwxr-xr-x root/root 202404 2019-04-13 05:15 ./usr/bin/bamfilterrg -rwxr-xr-x root/root 382732 2019-04-13 05:15 ./usr/bin/bamfixmateinformation -rwxr-xr-x root/root 370444 2019-04-13 05:15 ./usr/bin/bamflagsplit -rwxr-xr-x root/root 358156 2019-04-13 05:15 ./usr/bin/bamheap2 -rwxr-xr-x root/root 157332 2019-04-13 05:15 ./usr/bin/bamindex -rwxr-xr-x root/root 472860 2019-04-13 05:15 ./usr/bin/bamintervalcomment -rwxr-xr-x root/root 333580 2019-04-13 05:15 ./usr/bin/bamintervalcommenthist -rwxr-xr-x root/root 448284 2019-04-13 05:15 ./usr/bin/bamlastfilter -rwxr-xr-x root/root 341772 2019-04-13 05:15 ./usr/bin/bammapdist -rwxr-xr-x root/root 599820 2019-04-13 05:15 ./usr/bin/bammarkduplicates -rwxr-xr-x root/root 620300 2019-04-13 05:15 ./usr/bin/bammarkduplicates2 -rwxr-xr-x root/root 644876 2019-04-13 05:15 ./usr/bin/bammarkduplicatesopt -rwxr-xr-x root/root 206500 2019-04-13 05:15 ./usr/bin/bammaskflags -rwxr-xr-x root/root 272036 2019-04-13 05:15 ./usr/bin/bammdnm -rwxr-xr-x root/root 427804 2019-04-13 05:15 ./usr/bin/bammerge -rwxr-xr-x root/root 99988 2019-04-13 05:15 ./usr/bin/bamnumericalindex -rwxr-xr-x root/root 206500 2019-04-13 05:15 ./usr/bin/bamrank -rwxr-xr-x root/root 378636 2019-04-13 05:15 ./usr/bin/bamranksort -rwxr-xr-x root/root 435996 2019-04-13 05:15 ./usr/bin/bamrecalculatecigar -rwxr-xr-x root/root 198308 2019-04-13 05:15 ./usr/bin/bamrecompress -rwxr-xr-x root/root 358156 2019-04-13 05:15 ./usr/bin/bamrefextract -rwxr-xr-x root/root 423708 2019-04-13 05:15 ./usr/bin/bamrefinterval -rwxr-xr-x root/root 214692 2019-04-13 05:15 ./usr/bin/bamreset -rwxr-xr-x root/root 325388 2019-04-13 05:15 ./usr/bin/bamscrapcount -rwxr-xr-x root/root 1009840 2019-04-13 05:15 ./usr/bin/bamseqchksum -rwxr-xr-x root/root 1697848 2019-04-13 05:15 ./usr/bin/bamsormadup -rwxr-xr-x root/root 718620 2019-04-13 05:15 ./usr/bin/bamsort -rwxr-xr-x root/root 128660 2019-04-13 05:15 ./usr/bin/bamsplit -rwxr-xr-x root/root 132756 2019-04-13 05:15 ./usr/bin/bamsplitdiv -rwxr-xr-x root/root 538396 2019-04-13 05:15 ./usr/bin/bamstreamingmarkduplicates -rwxr-xr-x root/root 374540 2019-04-13 05:15 ./usr/bin/bamtagconversion -rwxr-xr-x root/root 517924 2019-04-13 05:15 ./usr/bin/bamtofastq -rwxr-xr-x root/root 435996 2019-04-13 05:15 ./usr/bin/bamvalidate -rwxr-xr-x root/root 210596 2019-04-13 05:15 ./usr/bin/bamzztoname -rwxr-xr-x root/root 59028 2019-04-13 05:15 ./usr/bin/fastaexplode -rwxr-xr-x root/root 177812 2019-04-13 05:15 ./usr/bin/fastqtobam -rwxr-xr-x root/root 157332 2019-04-13 05:15 ./usr/bin/fastqtobampar -rwxr-xr-x root/root 132756 2019-04-13 05:15 ./usr/bin/filtersam -rwxr-xr-x root/root 26260 2019-04-13 05:15 ./usr/bin/kmerprob -rwxr-xr-x root/root 231060 2019-04-13 05:15 ./usr/bin/lasToBAM -rwxr-xr-x root/root 59028 2019-04-13 05:15 ./usr/bin/normalisefasta drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/share/ drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/share/doc/biobambam2/ -rw-r--r-- root/root 157 2019-04-13 05:15 ./usr/share/doc/biobambam2/changelog.Debian.gz -rw-r--r-- root/root 2811 2019-04-13 05:15 ./usr/share/doc/biobambam2/copyright drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/share/lintian/ drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 118 2019-04-13 05:15 ./usr/share/lintian/overrides/biobambam2 drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/share/man/ drwxr-xr-x root/root 0 2019-04-13 05:15 ./usr/share/man/man1/ -rw-r--r-- root/root 1772 2019-04-13 05:15 ./usr/share/man/man1/bam12auxmerge.1.gz -rw-r--r-- root/root 1106 2019-04-13 05:15 ./usr/share/man/man1/bam12split.1.gz -rw-r--r-- root/root 1085 2019-04-13 05:15 ./usr/share/man/man1/bam12strip.1.gz -rw-r--r-- root/root 1215 2019-04-13 05:15 ./usr/share/man/man1/bamadapterclip.1.gz -rw-r--r-- root/root 2067 2019-04-13 05:15 ./usr/share/man/man1/bamadapterfind.1.gz -rw-r--r-- root/root 1032 2019-04-13 05:15 ./usr/share/man/man1/bamauxsort.1.gz -rw-r--r-- root/root 1291 2019-04-13 05:15 ./usr/share/man/man1/bamcat.1.gz -rw-r--r-- root/root 653 2019-04-13 05:15 ./usr/share/man/man1/bamchecksort.1.gz -rw-r--r-- root/root 1085 2019-04-13 05:15 ./usr/share/man/man1/bamclipreinsert.1.gz -rw-r--r-- root/root 1311 2019-04-13 05:15 ./usr/share/man/man1/bamcollate.1.gz -rw-r--r-- root/root 3438 2019-04-13 05:15 ./usr/share/man/man1/bamcollate2.1.gz -rw-r--r-- root/root 2751 2019-04-13 05:15 ./usr/share/man/man1/bamdownsamplerandom.1.gz -rw-r--r-- root/root 1473 2019-04-13 05:15 ./usr/share/man/man1/bamfillquery.1.gz -rw-r--r-- root/root 1147 2019-04-13 05:15 ./usr/share/man/man1/bamfilteraux.1.gz -rw-r--r-- root/root 1426 2019-04-13 05:15 ./usr/share/man/man1/bamfilterflags.1.gz -rw-r--r-- root/root 1191 2019-04-13 05:15 ./usr/share/man/man1/bamfilterheader.1.gz -rw-r--r-- root/root 1194 2019-04-13 05:15 ./usr/share/man/man1/bamfilterheader2.1.gz -rw-r--r-- root/root 1312 2019-04-13 05:15 ./usr/share/man/man1/bamfiltermc.1.gz -rw-r--r-- root/root 1089 2019-04-13 05:15 ./usr/share/man/man1/bamfilterrg.1.gz -rw-r--r-- root/root 1502 2019-04-13 05:15 ./usr/share/man/man1/bamfixmateinformation.1.gz -rw-r--r-- root/root 1620 2019-04-13 05:15 ./usr/share/man/man1/bamflagsplit.1.gz -rw-r--r-- root/root 564 2019-04-13 05:15 ./usr/share/man/man1/bamindex.1.gz -rw-r--r-- root/root 1951 2019-04-13 05:15 ./usr/share/man/man1/bamintervalcomment.1.gz -rw-r--r-- root/root 2555 2019-04-13 05:15 ./usr/share/man/man1/bammarkduplicates.1.gz -rw-r--r-- root/root 2674 2019-04-13 05:15 ./usr/share/man/man1/bammarkduplicates2.1.gz -rw-r--r-- root/root 2734 2019-04-13 05:15 ./usr/share/man/man1/bammarkduplicatesopt.1.gz -rw-r--r-- root/root 1487 2019-04-13 05:15 ./usr/share/man/man1/bammaskflags.1.gz -rw-r--r-- root/root 1621 2019-04-13 05:15 ./usr/share/man/man1/bammdnm.1.gz -rw-r--r-- root/root 1453 2019-04-13 05:15 ./usr/share/man/man1/bammerge.1.gz -rw-r--r-- root/root 1143 2019-04-13 05:15 ./usr/share/man/man1/bamrank.1.gz -rw-r--r-- root/root 1502 2019-04-13 05:15 ./usr/share/man/man1/bamrecalculatecigar.1.gz -rw-r--r-- root/root 1060 2019-04-13 05:15 ./usr/share/man/man1/bamrecompress.1.gz -rw-r--r-- root/root 1729 2019-04-13 05:15 ./usr/share/man/man1/bamreset.1.gz -rw-r--r-- root/root 2189 2019-04-13 05:15 ./usr/share/man/man1/bamseqchksum.1.gz -rw-r--r-- root/root 1754 2019-04-13 05:15 ./usr/share/man/man1/bamsormadup.1.gz -rw-r--r-- root/root 3688 2019-04-13 05:15 ./usr/share/man/man1/bamsort.1.gz -rw-r--r-- root/root 946 2019-04-13 05:15 ./usr/share/man/man1/bamsplit.1.gz -rw-r--r-- root/root 976 2019-04-13 05:15 ./usr/share/man/man1/bamsplitdiv.1.gz -rw-r--r-- root/root 2092 2019-04-13 05:15 ./usr/share/man/man1/bamstreamingmarkduplicates.1.gz -rw-r--r-- root/root 3106 2019-04-13 05:15 ./usr/share/man/man1/bamtofastq.1.gz -rw-r--r-- root/root 2028 2019-04-13 05:15 ./usr/share/man/man1/bamvalidate.1.gz -rw-r--r-- root/root 1084 2019-04-13 05:15 ./usr/share/man/man1/bamzztoname.1.gz -rw-r--r-- root/root 964 2019-04-13 05:15 ./usr/share/man/man1/fastaexplode.1.gz -rw-r--r-- root/root 2485 2019-04-13 05:15 ./usr/share/man/man1/fastqtobam.1.gz -rw-r--r-- root/root 1570 2019-04-13 05:15 ./usr/share/man/man1/lasToBAM.1.gz -rw-r--r-- root/root 1071 2019-04-13 05:15 ./usr/share/man/man1/normalisefasta.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 2069844 Build-Time: 3059 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 28 Job: biobambam2_2.0.95-1 Lintian: pass Machine Architecture: amd64 Package: biobambam2 Package-Time: 3098 Source-Version: 2.0.95-1 Space: 2069844 Status: successful Version: 2.0.95-1 -------------------------------------------------------------------------------- Finished at 2019-08-06T13:14:13Z Build needed 00:51:38, 2069844k disk space