sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | blasr 5.3.5+dfsg-2 (arm64) Thu, 03 Mar 2022 00:43:06 +0000 | +==============================================================================+ Package: blasr Version: 5.3.5+dfsg-2 Source Version: 5.3.5+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-70821ad3-b6d8-4fd6-9516-43beea671215' with '<>' I: NOTICE: Log filtering will replace 'build/blasr-CrWCnQ/resolver-tmEHGd' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2022-03-02-2002.59-F-2022-03-02-0804.51.pdiff [26.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2022-03-02-2002.59-F-2022-03-02-0804.51.pdiff [45.2 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2022-03-02-2002.59-F-2022-03-02-0804.51.pdiff [26.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2022-03-02-2002.59-F-2022-03-02-0804.51.pdiff [45.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8878 kB] Fetched 9242 kB in 4s (2411 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gcc-12-base libatomic1 libcc1-0 libgcc-s1 libgomp1 libitm1 liblsan0 libquadmath0 libstdc++6 libubsan1 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3061 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1 amd64 12-20220302-1 [9124 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1 amd64 12-20220302-1 [882 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-12-base amd64 12-20220302-1 [206 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6 amd64 12-20220302-1 [617 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0 amd64 12-20220302-1 [145 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0 amd64 12-20220302-1 [968 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1 amd64 12-20220302-1 [26.1 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1 amd64 12-20220302-1 [116 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libcc1-0 amd64 12-20220302-1 [41.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1 amd64 12-20220302-1 [50.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3061 kB in 0s (79.5 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.33-7) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'blasr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/blasr.git Please use: git clone https://salsa.debian.org/med-team/blasr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 138 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main blasr 5.3.5+dfsg-2 (dsc) [2158 B] Get:2 http://debian.oregonstate.edu/debian unstable/main blasr 5.3.5+dfsg-2 (tar) [124 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main blasr 5.3.5+dfsg-2 (diff) [10.9 kB] Fetched 138 kB in 0s (5385 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/blasr-CrWCnQ/blasr-5.3.5+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/blasr-CrWCnQ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), python3:any, meson, cmake, pkg-config, libboost-dev, libhdf5-dev, zlib1g-dev, libpbseq-dev, libpbbam-dev, libpbdata-dev, libpbcopper-dev, libgtest-dev, libblasr-dev (>= 5.3.4+dfsg-3~), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), python3:any, meson, cmake, pkg-config, libboost-dev, libhdf5-dev, zlib1g-dev, libpbseq-dev, libpbbam-dev, libpbdata-dev, libpbcopper-dev, libgtest-dev, libblasr-dev (>= 5.3.4+dfsg-3~), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [491 B] Get:5 copy:/<>/apt_archive ./ Packages [578 B] Fetched 2026 B in 0s (75.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils build-essential cmake cmake-data cpp-11-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross dpkg-dev dwz emacsen-common file g++ g++-11 g++-11-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-aarch64-linux-gnu gcc-11-aarch64-linux-gnu-base gcc-11-base:arm64 gcc-11-cross-base gcc-12-base:arm64 gcc-12-cross-base gcc-aarch64-linux-gnu gettext gettext-base googletest groff-base hdf5-helpers:arm64 intltool-debian libaec-dev:arm64 libaec0:arm64 libarchive-zip-perl libarchive13 libasan6:arm64 libasan6-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libblasr-dev:arm64 libblasr5.3.5:arm64 libboost-dev:arm64 libboost1.74-dev:arm64 libbrotli1 libbrotli1:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4 libcurl4:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libdpkg-perl libelf1 libexpat1 libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-11-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgfortran5:arm64 libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libgtest-dev:arm64 libhdf5-103-1:arm64 libhdf5-cpp-103-1:arm64 libhdf5-dev:arm64 libhdf5-fortran-102:arm64 libhdf5-hl-100:arm64 libhdf5-hl-cpp-100:arm64 libhdf5-hl-fortran-100:arm64 libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu67 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjpeg-dev:arm64 libjpeg62-turbo:arm64 libjpeg62-turbo-dev:arm64 libjsoncpp25 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.4-2 libldap-2.4-2:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libmpdec3 libncurses6 libnettle8:arm64 libnghttp2-14 libnghttp2-14:arm64 libnsl-dev libnsl-dev:arm64 libnsl2:arm64 libp11-kit0:arm64 libpbbam-dev:arm64 libpbbam1.7.0:arm64 libpbcopper-dev:arm64 libpbcopper1.9.3:arm64 libpbcopper2.0.0:arm64 libpbdata-dev:arm64 libpbihdf-dev:arm64 libpbseq-dev:arm64 libperl5.34 libpipeline1 libprocps8 libpsl5 libpsl5:arm64 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librhash0 librtmp1 librtmp1:arm64 libsasl2-2 libsasl2-2:arm64 libsasl2-modules-db libsasl2-modules-db:arm64 libsigsegv2 libsqlite3-0 libssh2-1 libssh2-1:arm64 libssl-dev:arm64 libssl1.1:arm64 libstdc++-11-dev libstdc++-11-dev:arm64 libstdc++-11-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libsz2:arm64 libtasn1-6:arm64 libtirpc-dev libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring2:arm64 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:arm64 linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db media-types meson ninja-build perl perl-modules-5.34 pkg-config po-debconf procps python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal rpcsvc-proto sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format gcc-11-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-11-multilib gcc-11-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc:arm64 libboost1.74-doc:arm64 libboost-atomic1.74-dev:arm64 libboost-chrono1.74-dev:arm64 libboost-container1.74-dev:arm64 libboost-context1.74-dev:arm64 libboost-contract1.74-dev:arm64 libboost-coroutine1.74-dev:arm64 libboost-date-time1.74-dev:arm64 libboost-exception1.74-dev:arm64 libboost-fiber1.74-dev:arm64 libboost-filesystem1.74-dev:arm64 libboost-graph1.74-dev:arm64 libboost-graph-parallel1.74-dev:arm64 libboost-iostreams1.74-dev:arm64 libboost-locale1.74-dev:arm64 libboost-log1.74-dev:arm64 libboost-math1.74-dev:arm64 libboost-mpi1.74-dev:arm64 libboost-mpi-python1.74-dev:arm64 libboost-numpy1.74-dev:arm64 libboost-program-options1.74-dev:arm64 libboost-python1.74-dev:arm64 libboost-random1.74-dev:arm64 libboost-regex1.74-dev:arm64 libboost-serialization1.74-dev:arm64 libboost-stacktrace1.74-dev:arm64 libboost-system1.74-dev:arm64 libboost-test1.74-dev:arm64 libboost-thread1.74-dev:arm64 libboost-timer1.74-dev:arm64 libboost-type-erasure1.74-dev:arm64 libboost-wave1.74-dev:arm64 libboost1.74-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64 libboost-nowide1.74-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 glibc-doc manpages-dev:arm64 libcurl4-doc:arm64 libgnutls28-dev:arm64 libidn11-dev:arm64 libkrb5-dev:arm64 libldap2-dev:arm64 librtmp-dev:arm64 libssh2-1-dev:arm64 gnupg git bzr gnutls-bin:arm64 krb5-doc:arm64 krb5-user:arm64 libhdf5-doc:arm64 liblzma-doc:arm64 libssl-doc:arm64 libstdc++-11-doc libstdc++-11-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.9-venv python3.9-doc binfmt-support Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx ca-certificates:arm64 ca-certificates libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:arm64 libldap-common libldap-common:arm64 libgpm2 publicsuffix publicsuffix:arm64 libsasl2-modules libsasl2-modules:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils build-essential cmake cmake-data cpp-11-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross dpkg-dev dwz emacsen-common file g++ g++-11 g++-11-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-aarch64-linux-gnu gcc-11-aarch64-linux-gnu-base gcc-11-base:arm64 gcc-11-cross-base gcc-12-base:arm64 gcc-12-cross-base gcc-aarch64-linux-gnu gettext gettext-base googletest groff-base hdf5-helpers:arm64 intltool-debian libaec-dev:arm64 libaec0:arm64 libarchive-zip-perl libarchive13 libasan6:arm64 libasan6-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libblasr-dev:arm64 libblasr5.3.5:arm64 libboost-dev:arm64 libboost1.74-dev:arm64 libbrotli1 libbrotli1:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4 libcurl4:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libdpkg-perl libelf1 libexpat1 libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-11-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgfortran5:arm64 libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libgtest-dev:arm64 libhdf5-103-1:arm64 libhdf5-cpp-103-1:arm64 libhdf5-dev:arm64 libhdf5-fortran-102:arm64 libhdf5-hl-100:arm64 libhdf5-hl-cpp-100:arm64 libhdf5-hl-fortran-100:arm64 libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu67 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjpeg-dev:arm64 libjpeg62-turbo:arm64 libjpeg62-turbo-dev:arm64 libjsoncpp25 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.4-2 libldap-2.4-2:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libmpdec3 libncurses6 libnettle8:arm64 libnghttp2-14 libnghttp2-14:arm64 libnsl-dev libnsl-dev:arm64 libnsl2:arm64 libp11-kit0:arm64 libpbbam-dev:arm64 libpbbam1.7.0:arm64 libpbcopper-dev:arm64 libpbcopper1.9.3:arm64 libpbcopper2.0.0:arm64 libpbdata-dev:arm64 libpbihdf-dev:arm64 libpbseq-dev:arm64 libperl5.34 libpipeline1 libprocps8 libpsl5 libpsl5:arm64 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librhash0 librtmp1 librtmp1:arm64 libsasl2-2 libsasl2-2:arm64 libsasl2-modules-db libsasl2-modules-db:arm64 libsigsegv2 libsqlite3-0 libssh2-1 libssh2-1:arm64 libssl-dev:arm64 libssl1.1:arm64 libstdc++-11-dev libstdc++-11-dev:arm64 libstdc++-11-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libsz2:arm64 libtasn1-6:arm64 libtirpc-dev libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring2:arm64 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:arm64 linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db media-types meson ninja-build perl perl-modules-5.34 pkg-config po-debconf procps python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal rpcsvc-proto sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 218 newly installed, 0 to remove and 0 not upgraded. Need to get 174 MB of archives. After this operation, 797 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1008 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.34 all 5.34.0-3 [2850 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.34 amd64 5.34.0-3 [4208 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.34.0-3 [297 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b2 [19.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-minimal amd64 3.9.10-2 [803 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.4.6-1 [108 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9-minimal amd64 3.9.10-2 [1937 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.9.8-1 [38.5 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 media-types all 5.0.0 [32.5 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.38.0-1 [827 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-stdlib amd64 3.9.10-2 [1683 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9 amd64 3.9.10-2 [487 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.9.8-1 [21.6 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.9.8-1 [38.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-12-base arm64 12-20220302-1 [206 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.3-2 [102 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.17-6 [63.7 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.17-6 [502 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.41-2 [295 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.41-2 [129 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.41-2 [66.9 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.3-1+b1 [144 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.5-1 [37.6 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.10.1-1 [1407 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.5-1.1 [823 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.38-2 [3265 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.27-1.1 [118 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.33-7 [2289 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.2.0-18 [1959 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.2.0-18 [10.2 MB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.21.1 [1568 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.21.1 [2171 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.13+dfsg-1 [709 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.5.2-1 [345 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2+b3 [276 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-2 [74.2 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg-2 [111 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.59+dfsg-1+b1 [233 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.10.0-3 [178 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.81.0-1 [358 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp25 amd64 1.9.5-3 [78.5 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.4.2-1 [129 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.43.0-1 [136 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 dh-elpa-helper all 2.0.10 [11.3 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 emacsen-common all 3.0.4 [19.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.22.1-1 [1905 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.22.1-1+b1 [7990 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-aarch64-linux-gnu-base amd64 11.2.0-18cross1 [208 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-aarch64-linux-gnu amd64 11.2.0-18cross1 [8493 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:11.2.0-2 [17.0 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-18cross1 [203 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-12-cross-base all 12-20220222-1cross1 [202 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.33-1cross1 [1243 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 12-20220222-1cross1 [35.1 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 12-20220222-1cross1 [102 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 12-20220222-1cross1 [23.4 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 12-20220222-1cross1 [9244 B] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-arm64-cross all 11.2.0-18cross1 [1941 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 12-20220222-1cross1 [925 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 11.2.0-18cross1 [1949 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 12-20220222-1cross1 [517 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 12-20220222-1cross1 [860 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libhwasan0-arm64-cross all 12-20220222-1cross1 [997 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-arm64-cross all 11.2.0-18cross1 [933 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-aarch64-linux-gnu amd64 11.2.0-18cross1 [16.8 MB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:11.2.0-2 [1456 B] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.15.5-1cross1 [1554 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.33-1cross1 [1938 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-arm64-cross all 11.2.0-18cross1 [1917 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-aarch64-linux-gnu amd64 11.2.0-18cross1 [9380 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:11.2.0-2 [1176 B] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1 [337 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.9 [6708 B] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.6 [193 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.186-1 [179 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.6 [1054 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-11-base arm64 11.2.0-18 [208 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 googletest all 1.11.0-3 [535 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main arm64 hdf5-helpers arm64 1.10.7+repack-4 [42.9 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 12-20220302-1 [35.1 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.33-7 [2478 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main arm64 libaec0 arm64 1.0.6-1 [19.7 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main arm64 libsz2 arm64 1.0.6-1 [7384 B] Get:128 http://debian.oregonstate.edu/debian unstable/main arm64 libaec-dev arm64 1.0.6-1 [18.5 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main arm64 libasan6 arm64 11.2.0-18 [1951 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 12-20220302-1 [9504 B] Get:131 http://debian.oregonstate.edu/debian unstable/main arm64 libbrotli1 arm64 1.0.9-2+b3 [270 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main arm64 libcom-err2 arm64 1.46.5-2 [75.5 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5support0 arm64 1.19.2-2 [64.9 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main arm64 libk5crypto3 arm64 1.19.2-2 [114 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main arm64 libkeyutils1 arm64 1.6.1-2 [15.4 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main arm64 libssl1.1 arm64 1.1.1m-1 [1386 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5-3 arm64 1.19.2-2 [346 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.19.2-2 [156 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main arm64 libunistring2 arm64 1.0-1 [406 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main arm64 libidn2-0 arm64 2.3.2-2 [94.6 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main arm64 libgmp10 arm64 2:6.2.1+dfsg-3 [538 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main arm64 libnettle8 arm64 3.7.3-1 [277 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main arm64 libhogweed6 arm64 3.7.3-1 [316 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main arm64 libffi8 arm64 3.4.2-4 [23.0 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main arm64 libp11-kit0 arm64 0.24.0-6 [330 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main arm64 libtasn1-6 arm64 4.18.0-4 [54.0 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main arm64 libgnutls30 arm64 3.7.3-4+b1 [1297 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.8 [622 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-2 [74.5 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg-2 [110 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main arm64 libldap-2.4-2 arm64 2.4.59+dfsg-1+b1 [223 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-2 [87.9 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main arm64 libssh2-1 arm64 1.10.0-3 [171 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main arm64 libzstd1 arm64 1.4.8+dfsg-3 [290 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl4 arm64 7.81.0-1 [336 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-103-1 arm64 1.10.7+repack-4 [1067 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 12-20220302-1 [559 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-cpp-103-1 arm64 1.10.7+repack-4 [133 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-5 [46.1 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl3-gnutls arm64 7.81.0-1 [332 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate0 arm64 1.10-1 [60.9 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main arm64 libhtscodecs2 arm64 1.2.1-1 [52.6 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma5 arm64 5.2.5-2 [165 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main arm64 libhts3 arm64 1.13+ds-2 [361 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main arm64 libpbcopper1.9.3 arm64 1.9.3+dfsg-2 [499 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main arm64 libpbbam1.7.0 arm64 1.7.0+dfsg-2 [593 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main arm64 libblasr5.3.5 arm64 5.3.5+dfsg-3 [1036 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main arm64 libpbcopper2.0.0 arm64 2.0.0+dfsg-2 [510 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main arm64 libpbcopper-dev arm64 2.0.0+dfsg-2 [846 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main arm64 libpbdata-dev arm64 5.3.5+dfsg-3 [41.2 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main arm64 libblasr-dev arm64 5.3.5+dfsg-3 [2036 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 12-20220302-1 [104 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 12-20220302-1 [23.9 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 12-20220302-1 [926 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 11.2.0-18 [1956 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 12-20220302-1 [861 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main arm64 libhwasan0 arm64 12-20220302-1 [998 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-11-dev arm64 11.2.0-18 [931 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.16.11-1 [1483 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.27-1.1 [90.7 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.27-1.1 [121 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc3 arm64 1.3.2-2 [80.4 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc-dev arm64 1.3.2-2 [193 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.33-7 [1941 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-11-dev arm64 11.2.0-18 [1918 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main arm64 libboost1.74-dev arm64 1.74.0-14 [9533 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get:193 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl4-gnutls-dev arm64 7.81.0-1 [436 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate-dev arm64 1.10-1 [51.8 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main arm64 libgfortran5 arm64 12-20220302-1 [340 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.70.4-1 [1405 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main arm64 libgtest-dev arm64 1.11.0-3 [227 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-fortran-102 arm64 1.10.7+repack-4 [107 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-hl-100 arm64 1.10.7+repack-4 [81.1 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-hl-fortran-100 arm64 1.10.7+repack-4 [57.8 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-hl-cpp-100 arm64 1.10.7+repack-4 [40.1 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.2-1 [152 kB] Get:204 http://debian.oregonstate.edu/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.2-1 [272 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.2-1 [74.7 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main arm64 libssl-dev arm64 1.1.1m-1 [1691 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-dev arm64 1.10.7+repack-4 [2588 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma-dev arm64 5.2.5-2 [227 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main arm64 libhts-dev arm64 1.13+ds-2 [4087 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main arm64 libpbbam-dev arm64 1.7.0+dfsg-2 [87.2 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main arm64 libpbihdf-dev arm64 5.3.5+dfsg-3 [47.6 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main arm64 libpbseq-dev arm64 5.3.5+dfsg-3 [5416 B] Get:213 http://debian.oregonstate.edu/debian unstable/main amd64 ninja-build amd64 1.10.1-1 [112 kB] Get:214 http://debian.oregonstate.edu/debian unstable/main amd64 python3-pkg-resources all 59.6.0-1.2 [196 kB] Get:215 http://debian.oregonstate.edu/debian unstable/main amd64 python3-lib2to3 all 3.9.10-1 [79.4 kB] Get:216 http://debian.oregonstate.edu/debian unstable/main amd64 python3-distutils all 3.9.10-1 [146 kB] Get:217 http://debian.oregonstate.edu/debian unstable/main amd64 meson all 0.61.2-1 [517 kB] Get:218 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 174 MB in 2s (103 MB/s) Selecting previously unselected package perl-modules-5.34. (Reading database ... 10598 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.34_5.34.0-3_all.deb ... Unpacking perl-modules-5.34 (5.34.0-3) ... Selecting previously unselected package libperl5.34:amd64. Preparing to unpack .../1-libperl5.34_5.34.0-3_amd64.deb ... Unpacking libperl5.34:amd64 (5.34.0-3) ... Selecting previously unselected package perl. Preparing to unpack .../2-perl_5.34.0-3_amd64.deb ... Unpacking perl (5.34.0-3) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../3-liblocale-gettext-perl_1.07-4+b2_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../4-libpython3.9-minimal_3.9.10-2_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.10-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../5-libexpat1_2.4.6-1_amd64.deb ... 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No schema files found: doing nothing. Setting up libbrotli1:amd64 (1.0.9-2+b3) ... Setting up libsqlite3-0:amd64 (3.38.0-1) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.41-2) ... Setting up linux-libc-dev:arm64 (5.16.11-1) ... Setting up gettext-base (0.21-4) ... Setting up binutils-aarch64-linux-gnu (2.38-2) ... Setting up file (1:5.41-2) ... Setting up perl-modules-5.34 (5.34.0-3) ... Setting up googletest (1.11.0-3) ... Setting up ninja-build (1.10.1-1) ... Setting up gcc-12-base:arm64 (12-20220302-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-2) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up libuv1:amd64 (1.43.0-1) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up emacsen-common (3.0.4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up dh-elpa-helper (2.0.10) ... Setting up libncurses6:amd64 (6.3-2) ... Setting up libsigsegv2:amd64 (2.14-1) ... Setting up libc6-arm64-cross (2.33-1cross1) ... Setting up autopoint (0.21-4) ... Setting up libjsoncpp25:amd64 (1.9.5-3) ... Setting up libitm1-arm64-cross (12-20220222-1cross1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-2) ... Setting up linux-libc-dev-arm64-cross (5.15.5-1cross1) ... Setting up cpp-11-aarch64-linux-gnu (11.2.0-18cross1) ... Setting up gcc-11-cross-base (11.2.0-18cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up librhash0:amd64 (1.4.2-1) ... Setting up libcrypt-dev:amd64 (1:4.4.27-1.1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libc6-dev:amd64 (2.33-7) ... Setting up libssh2-1:amd64 (1.10.0-3) ... Setting up cmake-data (3.22.1-1) ... Setting up libelf1:amd64 (0.186-1) ... Setting up libxml2:amd64 (2.9.13+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up libprocps8:amd64 (2:3.3.17-6) ... 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Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.21.1) ... Setting up autoconf (2.71-2) ... Setting up libstdc++-11-dev:amd64 (11.2.0-18) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up procps (2:3.3.17-6) ... Setting up libcurl4:amd64 (7.81.0-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up python3.9 (3.9.10-2) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up libubsan1-arm64-cross (12-20220222-1cross1) ... Setting up g++-11 (11.2.0-18) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.6) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up python3 (3.9.8-1) ... Setting up man-db (2.10.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.21.1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgcc-11-dev-arm64-cross (11.2.0-18cross1) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up pkg-config (0.29.2-1) ... Setting up g++ (4:11.2.0-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up cmake (3.22.1-1+b1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up python3-lib2to3 (3.9.10-1) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.9.10-1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gcc-11-aarch64-linux-gnu (11.2.0-18cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up meson (0.61.2-1) ... Setting up libstdc++-11-dev-arm64-cross (11.2.0-18cross1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-11-aarch64-linux-gnu (11.2.0-18cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up gcc-aarch64-linux-gnu (4:11.2.0-2) ... Setting up debhelper (13.6) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:11.2.0-2) ... 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Setting up libhts-dev:arm64 (1.13+ds-2) ... Setting up libhdf5-dev:arm64 (1.10.7+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libboost-dev:arm64 (1.74.0.3) ... Setting up libpbbam-dev:arm64 (1.7.0+dfsg-2) ... Setting up libpbihdf-dev:arm64 (5.3.5+dfsg-3) ... Setting up libpbseq-dev:arm64 (5.3.5+dfsg-3) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.33-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.38-2 dpkg-dev_1.21.1 g++-11_11.2.0-18 gcc-11_11.2.0-18 libc6-dev_2.33-7 libstdc++-11-dev_11.2.0-18 libstdc++-11-dev-arm64-cross_11.2.0-18cross1 libstdc++6_12-20220302-1 libstdc++6-arm64-cross_12-20220222-1cross1 linux-libc-dev_5.16.11-1 Package versions: adduser_3.118 apt_2.4.0 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-2 binutils-aarch64-linux-gnu_2.38-2 binutils-common_2.38-2 binutils-x86-64-linux-gnu_2.38-2 bsdextrautils_2.37.3-1+b1 bsdutils_1:2.37.3-1+b1 build-essential_12.9 bzip2_1.0.8-5 cmake_3.22.1-1+b1 cmake-data_3.22.1-1 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.2.0-18 cpp-11-aarch64-linux-gnu_11.2.0-18cross1 cpp-8_8.4.0-7 cpp-aarch64-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-arm64_12.9 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debian-archive-keyring_2021.1.1 debianutils_5.7-0.1 dh-autoreconf_20 dh-elpa-helper_2.0.10 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.1 dwz_0.14-1 e2fsprogs_1.46.5-2 emacsen-common_3.0.4 fakeroot_1.27-1 fdisk_2.37.3-1+b1 file_1:5.41-2 findutils_4.9.0-2 g++_4:11.2.0-2 g++-11_11.2.0-18 g++-11-aarch64-linux-gnu_11.2.0-18cross1 g++-aarch64-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-14 gcc-11_11.2.0-18 gcc-11-aarch64-linux-gnu_11.2.0-18cross1 gcc-11-aarch64-linux-gnu-base_11.2.0-18cross1 gcc-11-base_11.2.0-18 gcc-11-cross-base_11.2.0-18cross1 gcc-12-base_12-20220302-1 gcc-12-cross-base_12-20220222-1cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-5 gcc-aarch64-linux-gnu_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 googletest_1.11.0-3 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hdf5-helpers_1.10.7+repack-4 hostname_3.23 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.4.0 libarchive-zip-perl_1.68-1 libarchive13_3.5.2-1 libasan5_9.4.0-5 libasan6_11.2.0-18 libasan6-arm64-cross_11.2.0-18cross1 libatomic1_12-20220302-1 libatomic1-arm64-cross_12-20220222-1cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1 libbinutils_2.38-2 libblasr-dev_5.3.5+dfsg-3 libblasr5.3.5_5.3.5+dfsg-3 libblkid1_2.37.3-1+b1 libboost-dev_1.74.0.3 libboost1.74-dev_1.74.0-14 libbrotli1_1.0.9-2+b3 libbz2-1.0_1.0.8-5 libc-bin_2.33-7 libc-dev-bin_2.33-7 libc6_2.33-7 libc6-arm64-cross_2.33-1cross1 libc6-dev_2.33-7 libc6-dev-arm64-cross_2.33-1cross1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_12-20220302-1 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.38-2 libctf0_2.38-2 libcurl3-gnutls_7.81.0-1 libcurl4_7.81.0-1 libcurl4-gnutls-dev_7.81.0-1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdebian-dpkgcross-perl_2.6.18+nmu2 libdeflate-dev_1.10-1 libdeflate0_1.10-1 libdpkg-perl_1.21.1 libelf1_0.186-1 libexpat1_2.4.6-1 libext2fs2_1.46.5-2 libfakeroot_1.27-1 libfdisk1_2.37.3-1+b1 libffi6_3.2.1-9 libffi8_3.4.2-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.23-1 libgcc-11-dev_11.2.0-18 libgcc-11-dev-arm64-cross_11.2.0-18cross1 libgcc-s1_12-20220302-1 libgcc-s1-arm64-cross_12-20220222-1cross1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.23-1 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libldap-2.4-2_2.4.59+dfsg-1+b1 liblocale-gettext-perl_1.07-4+b2 liblsan0_12-20220302-1 liblsan0-arm64-cross_12-20220222-1cross1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.3-1+b1 libmpc3_1.2.1-1 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncurses6_6.3-2 libncursesw6_6.3-2 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpbbam-dev_1.7.0+dfsg-2 libpbbam1.7.0_1.7.0+dfsg-2 libpbcopper-dev_2.0.0+dfsg-2 libpbcopper1.9.3_1.9.3+dfsg-2 libpbcopper2.0.0_2.0.0+dfsg-2 libpbdata-dev_5.3.5+dfsg-3 libpbihdf-dev_5.3.5+dfsg-3 libpbseq-dev_5.3.5+dfsg-3 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.34_5.34.0-3 libpipeline1_1.5.5-1 libprocps8_2:3.3.17-6 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.8-1 libpython3.9-minimal_3.9.10-2 libpython3.9-stdlib_3.9.10-2 libquadmath0_12-20220302-1 libreadline8_8.1.2-1 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-2 libsasl2-modules-db_2.1.28+dfsg-2 libseccomp2_2.5.3-2 libselinux1_3.3-1+b1 libsemanage-common_3.3-1 libsemanage1_3.1-2 libsemanage2_3.3-1+b1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.37.3-1+b1 libsqlite3-0_3.38.0-1 libss2_1.46.5-2 libssh2-1_1.10.0-3 libssl-dev_1.1.1m-1 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-18 libstdc++-11-dev-arm64-cross_11.2.0-18cross1 libstdc++6_12-20220302-1 libstdc++6-arm64-cross_12-20220222-1cross1 libsub-override-perl_0.09-2 libsystemd0_250.3-2 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-18 libtsan0-arm64-cross_11.2.0-18cross1 libubsan1_12-20220302-1 libubsan1-arm64-cross_12-20220222-1cross1 libuchardet0_0.0.7-1 libudev1_250.3-2 libunistring2_1.0-1 libuuid1_2.37.3-1+b1 libuv1_1.43.0-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.13+dfsg-1 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.16.11-1 linux-libc-dev-arm64-cross_5.15.5-1cross1 login_1:4.11.1+dfsg1-1 logsave_1.46.5-2 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.1-1 mawk_1.3.4.20200120-3+b1 media-types_5.0.0 meson_0.61.2-1 mount_2.37.3-1+b1 ncurses-base_6.3-2 ncurses-bin_6.3-2 ninja-build_1.10.1-1 passwd_1:4.11.1+dfsg1-1 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.28_5.28.1-6 perl-modules-5.34_5.34.0-3 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 procps_2:3.3.17-6 python3_3.9.8-1 python3-distutils_3.9.10-1 python3-lib2to3_3.9.10-1 python3-minimal_3.9.8-1 python3-pkg-resources_59.6.0-1.2 python3.9_3.9.10-2 python3.9-minimal_3.9.10-2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.3-1+b1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: blasr Binary: blasr Architecture: any Version: 5.3.5+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/blasr Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/blasr Vcs-Git: https://salsa.debian.org/med-team/blasr.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), python3:any, meson, cmake, pkg-config, libboost-dev, libhdf5-dev, zlib1g-dev, libpbseq-dev, libpbbam-dev, libpbdata-dev, libpbcopper-dev, libgtest-dev, libblasr-dev (>= 5.3.4+dfsg-3~) Package-List: blasr deb science optional arch=any Checksums-Sha1: 334132438305cfaf3d7ee6208bcb4cc4b493be5d 124460 blasr_5.3.5+dfsg.orig.tar.xz 140c76538467b36d0cf6c064aa572406aa22eef8 10912 blasr_5.3.5+dfsg-2.debian.tar.xz Checksums-Sha256: 765ac47ae74f56e3bee17e2a3c81d404faf7419e42eb45bc9f2a71c7a5942205 124460 blasr_5.3.5+dfsg.orig.tar.xz 8109884ea9357840a974c9e8a4bf420488fe699d925b05eb52ef7bf9dd685245 10912 blasr_5.3.5+dfsg-2.debian.tar.xz Files: 46c888e8f9c606d840b0d9dcc8036b21 124460 blasr_5.3.5+dfsg.orig.tar.xz c1c57ad4d6cef42779f158e967bf2657 10912 blasr_5.3.5+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmIJANYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEYBg//UWCruFiSccTPPkcQHmsQl372khqVD0rc 4cY8265aCIIs7AplMLjA6KHqa4jYuhY5vLJpZOewQE2i6U0CrHpxCf+fW4zdmDhD JKJH027i8bo1awmCLnNV2l639ex1oD1fwO4nbvVdq62ZAMP2cfEKjb2R7mKaDLJj eE3p+ogRmIF5yLRBIVHMIpiEaiUCNDUGMyzNog38IGrMv/jNsU4Cl44VNj7aQkMu riIlktmrZpNQs7ks6mysl4uY+Zkd0mvprG+F+oD1G2XeXdDcHqDsz6OTDj6wRVpc 1V31Fdc/nZC8/eYpTm7/S4Yf5JhGd8fvn4KgnNwTwRTqocsHMIgixHVIbgNuZOg0 r+tJIkUmeXGGqH5nouitXXiqkga5+uNdcZv2az3biS2GKEqa35xbWci2jnGSKROl +38ENQYGGk6vKoeC1RlrlRygtgkLQV8UV/Exx8UN1bfCy1nTdIHrzdsUVub5Yb0V F1/fNbKReP1Kb9ZGqrOXUJSfG0+WWEWwZuUQ56SoPDa1d5C2nYk3fVB4emCVSNpV 0e2bGIeiPdMq+2l0TrheJ7PL4+fLa7jHIyCJZpt7VpcCyxz8+/62iJkt+LclTQLf qUayfsgDKL4PGbe/C3AyZVIuPJmZP5hmxGvH2CFx1j1CWPJg6KeWw30TR9f1wpTu MRKUEZcobmE= =pTbE -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.tJeGhKwx/trustedkeys.kbx': General error gpgv: Signature made Sun Feb 13 13:00:06 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./blasr_5.3.5+dfsg-2.dsc dpkg-source: info: extracting blasr in /<> dpkg-source: info: unpacking blasr_5.3.5+dfsg.orig.tar.xz dpkg-source: info: unpacking blasr_5.3.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_pblibs.patch dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-70821ad3-b6d8-4fd6-9516-43beea671215 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package blasr dpkg-buildpackage: info: source version 5.3.5+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary-arch dh binary-arch --buildsystem=meson dh_update_autotools_config -a -O--buildsystem=meson dh_autoreconf -a -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' LDFLAGS="-L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5_cpp -lhdf5 -Wl,-z,relro" CPPFLAGS="-isystem /usr/include/hdf5/serial" dh_auto_configure -- -Dtests=false cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu --cross-file /<>/blasr-5.3.5\+dfsg/debian/.debhelper/generated/_source/meson-cross-file.conf -Dtests=false DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. The Meson build system Version: 0.61.2 Source dir: /<> Build dir: /<>/obj-aarch64-linux-gnu Build type: cross build Project name: blasr Project version: 5.3.5 C++ compiler for the host machine: /usr/bin/aarch64-linux-gnu-g++ (gcc 11.2.0 "aarch64-linux-gnu-g++ (Debian 11.2.0-18) 11.2.0") C++ linker for the host machine: /usr/bin/aarch64-linux-gnu-g++ ld.bfd 2.38 C++ compiler for the build machine: c++ (gcc 11.2.0 "c++ (Debian 11.2.0-18) 11.2.0") C++ linker for the build machine: c++ ld.bfd 2.38 Build machine cpu family: x86_64 Build machine cpu: x86_64 Host machine cpu family: aarch64 Host machine cpu: arm64 Target machine cpu family: aarch64 Target machine cpu: arm64 Compiler for C++ supports arguments -Wno-delete-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Run-time dependency threads found: YES Found pkg-config: /usr/bin/aarch64-linux-gnu-pkg-config (0.29.2) Run-time dependency Boost found: YES 1.74.0 (/usr/include) Library pbbam found: YES Run-time dependency libblasr found: YES 5.3.5 Run-time dependency zlib found: YES 1.2.11 Run-time dependency htslib found: YES 1.13+ds Library pbcopper found: YES Configuring BlasrVersion.h using configuration Build targets in project: 5 blasr 5.3.5 User defined options Cross files : /<>/debian/.debhelper/generated/_source/meson-cross-file.conf buildtype : plain libdir : lib/aarch64-linux-gnu localstatedir: /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload tests : false Found ninja-1.10.1 at /usr/bin/ninja make[1]: Leaving directory '/<>' dh_auto_build -a -O--buildsystem=meson cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 ninja -j1 -v [1/25] /usr/bin/meson --internal vcstagger ../BlasrGitHash.h.in BlasrGitHash.h '' /<> @BLASR_GIT_SHA1@ '(.*)' /<>/git describe --always '--dirty=*' [2/25] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o -MF libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o.d -o libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o -c ../extrautils/SuffixArrayToBWT.cpp FAILED: libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o -MF libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o.d -o libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o -c ../extrautils/SuffixArrayToBWT.cpp In file included from /usr/include/pbcopper/data/Read.h:11, from /usr/include/pbcopper/data/MappedRead.h:8, from /usr/include/pbbam/BamRecord.h:14, from /usr/include/pbseq/pbdata/DNASequence.hpp:17, from /usr/include/pbseq/alignment/bwt/Occ.hpp:8, from /usr/include/pbseq/alignment/bwt/BWT.hpp:7, from ../extrautils/SuffixArrayToBWT.cpp:4: /usr/include/pbcopper/data/ReadId.h:22:10: error: ‘optional’ in namespace ‘std’ does not name a template type 22 | std::optional ZmwInterval; | ^~~~~~~~ /usr/include/pbcopper/data/ReadId.h:22:5: note: ‘std::optional’ is only available from C++17 onwards 22 | std::optional ZmwInterval; | ^~~ In file included from /usr/include/pbcopper/data/MappedRead.h:8, from /usr/include/pbbam/BamRecord.h:14, from /usr/include/pbseq/pbdata/DNASequence.hpp:17, from /usr/include/pbseq/alignment/bwt/Occ.hpp:8, from /usr/include/pbseq/alignment/bwt/BWT.hpp:7, from ../extrautils/SuffixArrayToBWT.cpp:4: /usr/include/pbcopper/data/Read.h:28:49: error: ‘std::optional’ has not been declared 28 | Read(Data::ReadId id, std::string seq, std::optional pw, std::optional ipd, | ^~~~~~~~ /usr/include/pbcopper/data/Read.h:28:57: error: expected ‘,’ or ‘...’ before ‘<’ token 28 | Read(Data::ReadId id, std::string seq, std::optional pw, std::optional ipd, | ^ /usr/include/pbcopper/data/Read.h:40:10: error: ‘optional’ in namespace ‘std’ does not name a template type 40 | std::optional PulseWidth; | ^~~~~~~~ /usr/include/pbcopper/data/Read.h:40:5: note: ‘std::optional’ is only available from C++17 onwards 40 | std::optional PulseWidth; | ^~~ /usr/include/pbcopper/data/Read.h:42:10: error: ‘optional’ in namespace ‘std’ does not name a template type 42 | std::optional IPD; | ^~~~~~~~ /usr/include/pbcopper/data/Read.h:42:5: note: ‘std::optional’ is only available from C++17 onwards 42 | std::optional IPD; | ^~~ In file included from /usr/include/pbbam/BamRecord.h:14, from /usr/include/pbseq/pbdata/DNASequence.hpp:17, from /usr/include/pbseq/alignment/bwt/Occ.hpp:8, from /usr/include/pbseq/alignment/bwt/BWT.hpp:7, from ../extrautils/SuffixArrayToBWT.cpp:4: /usr/include/pbcopper/data/MappedRead.h:63:10: error: ‘optional’ in namespace ‘std’ does not name a template type 63 | std::optional AlignedIPD( | ^~~~~~~~ /usr/include/pbcopper/data/MappedRead.h:63:5: note: ‘std::optional’ is only available from C++17 onwards 63 | std::optional AlignedIPD( | ^~~ /usr/include/pbcopper/data/MappedRead.h:68:10: error: ‘optional’ in namespace ‘std’ does not name a template type 68 | std::optional AlignedPulseWidth( | ^~~~~~~~ /usr/include/pbcopper/data/MappedRead.h:68:5: note: ‘std::optional’ is only available from C++17 onwards 68 | std::optional AlignedPulseWidth( | ^~~ In file included from ../extrautils/SuffixArrayToBWT.cpp:4: /usr/include/pbseq/alignment/bwt/BWT.hpp: In member function ‘void Bwt::InitializeDNACharacterCount() [with T_BWT_Sequence = PackedDNASequence; T_DNASequence = FASTASequence]’: /usr/include/pbseq/alignment/bwt/BWT.hpp:192:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 192 | charCount[0]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:193:17: note: here 193 | case 0: //A | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:194:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 194 | charCount[1]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:195:17: note: here 195 | case 1: //C | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:196:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 196 | charCount[2]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:197:17: note: here 197 | case 2: //G | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:198:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 198 | charCount[3]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:199:17: note: here 199 | case 3: //T | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:200:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 200 | charCount[4]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:201:17: note: here 201 | case 4: //N | ^~~~ ninja: build stopped: subcommand failed. dh_auto_build: error: cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 ninja -j1 -v returned exit code 1 make: *** [debian/rules:33: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2022-03-03T00:44:05Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 1468 Build-Time: 8 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 37 Job: blasr_5.3.5+dfsg-2 Machine Architecture: amd64 Package: blasr Package-Time: 59 Source-Version: 5.3.5+dfsg-2 Space: 1468 Status: attempted Version: 5.3.5+dfsg-2 -------------------------------------------------------------------------------- Finished at 2022-03-03T00:44:05Z Build needed 00:00:59, 1468k disk space