sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | blasr 5.3.5+dfsg-4 (ppc64el) Thu, 10 Mar 2022 17:26:14 +0000 | +==============================================================================+ Package: blasr Version: 5.3.5+dfsg-4 Source Version: 5.3.5+dfsg-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-b3f0ea83-2534-47bd-bc30-09bee9b7181a' with '<>' I: NOTICE: Log filtering will replace 'build/blasr-C7WWBv/resolver-cRYVYW' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2022-03-10-1401.49-F-2022-03-10-0801.51.pdiff [27.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2022-03-10-1401.49-F-2022-03-10-0801.51.pdiff [24.4 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2022-03-10-1401.49-F-2022-03-10-0801.51.pdiff [27.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2022-03-10-1401.49-F-2022-03-10-0801.51.pdiff [24.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main ppc64el Packages [8848 kB] Fetched 9192 kB in 4s (2385 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libsemanage2 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 98.9 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libsemanage2 amd64 3.3-1+b2 [98.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 98.9 kB in 0s (7557 kB/s) (Reading database ... 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Processing triggers for libc-bin (2.33-7) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'blasr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/blasr.git Please use: git clone https://salsa.debian.org/med-team/blasr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 138 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main blasr 5.3.5+dfsg-4 (dsc) [2158 B] Get:2 http://debian.oregonstate.edu/debian unstable/main blasr 5.3.5+dfsg-4 (tar) [124 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main blasr 5.3.5+dfsg-4 (diff) [11.1 kB] Fetched 138 kB in 0s (4693 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/blasr-C7WWBv/blasr-5.3.5+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/blasr-C7WWBv' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), python3:any, meson, cmake, pkg-config, libboost-dev, libhdf5-dev, zlib1g-dev, libpbseq-dev, libpbbam-dev, libpbdata-dev, libpbcopper-dev, libgtest-dev, libblasr-dev (>= 5.3.4+dfsg-4~), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 13), python3:any, meson, cmake, pkg-config, libboost-dev, libhdf5-dev, zlib1g-dev, libpbseq-dev, libpbbam-dev, libpbdata-dev, libpbcopper-dev, libgtest-dev, libblasr-dev (>= 5.3.4+dfsg-4~), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [493 B] Get:5 copy:/<>/apt_archive ./ Packages [584 B] Fetched 2034 B in 0s (86.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils build-essential cmake cmake-data cpp-11-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross dpkg-dev dwz emacsen-common file g++ g++-11 g++-11-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-11-base:ppc64el gcc-11-cross-base gcc-11-powerpc64le-linux-gnu gcc-11-powerpc64le-linux-gnu-base gcc-12-base:ppc64el gcc-12-cross-base gcc-powerpc64le-linux-gnu gettext gettext-base googletest groff-base hdf5-helpers:ppc64el intltool-debian libaec-dev:ppc64el libaec0:ppc64el libarchive-zip-perl libarchive13 libasan6:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libblasr-dev:ppc64el libblasr5.3.5:ppc64el libboost-dev:ppc64el libboost1.74-dev:ppc64el libbrotli1 libbrotli1:ppc64el libbz2-1.0:ppc64el libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libcurl3-gnutls:ppc64el libcurl4 libcurl4:ppc64el libcurl4-gnutls-dev:ppc64el libdb5.3:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:ppc64el libdeflate0:ppc64el libdpkg-perl libelf1 libexpat1 libffi8:ppc64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:ppc64el libgcc-11-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgfortran5:ppc64el libglib2.0-0 libgmp10:ppc64el libgnutls30:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el libgtest-dev:ppc64el libhdf5-103-1:ppc64el libhdf5-cpp-103-1:ppc64el libhdf5-dev:ppc64el libhdf5-fortran-102:ppc64el libhdf5-hl-100:ppc64el libhdf5-hl-cpp-100:ppc64el libhdf5-hl-fortran-100:ppc64el libhogweed6:ppc64el libhts-dev:ppc64el libhts3:ppc64el libhtscodecs2:ppc64el libicu67 libidn2-0:ppc64el libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libjpeg-dev:ppc64el libjpeg62-turbo:ppc64el libjpeg62-turbo-dev:ppc64el libjsoncpp25 libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el libldap-2.4-2 libldap-2.4-2:ppc64el liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross liblzma-dev:ppc64el liblzma5:ppc64el libmagic-mgc libmagic1 libmpdec3 libncurses6 libnettle8:ppc64el libnghttp2-14 libnghttp2-14:ppc64el libnsl-dev libnsl-dev:ppc64el libnsl2:ppc64el libp11-kit0:ppc64el libpbbam-dev:ppc64el libpbbam1.7.0:ppc64el libpbcopper-dev:ppc64el libpbcopper1.9.3:ppc64el libpbcopper2.0.0:ppc64el libpbdata-dev:ppc64el libpbihdf-dev:ppc64el libpbseq-dev:ppc64el libperl5.34 libpipeline1 libprocps8 libpsl5 libpsl5:ppc64el libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0:ppc64el libquadmath0-ppc64el-cross librhash0 librtmp1 librtmp1:ppc64el libsasl2-2 libsasl2-2:ppc64el libsasl2-modules-db libsasl2-modules-db:ppc64el libsigsegv2 libsqlite3-0 libssh2-1 libssh2-1:ppc64el libssl-dev:ppc64el libssl1.1:ppc64el libstdc++-11-dev libstdc++-11-dev:ppc64el libstdc++-11-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libsz2:ppc64el libtasn1-6:ppc64el libtirpc-dev libtirpc-dev:ppc64el libtirpc3:ppc64el libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring2:ppc64el libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:ppc64el linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db media-types meson ninja-build perl perl-modules-5.34 pkg-config po-debconf procps python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal rpcsvc-proto sensible-utils ucf zlib1g:ppc64el zlib1g-dev:ppc64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format gcc-11-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-11-multilib gcc-11-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc:ppc64el libboost1.74-doc:ppc64el libboost-atomic1.74-dev:ppc64el libboost-chrono1.74-dev:ppc64el libboost-container1.74-dev:ppc64el libboost-context1.74-dev:ppc64el libboost-contract1.74-dev:ppc64el libboost-coroutine1.74-dev:ppc64el libboost-date-time1.74-dev:ppc64el libboost-exception1.74-dev:ppc64el libboost-fiber1.74-dev:ppc64el libboost-filesystem1.74-dev:ppc64el libboost-graph1.74-dev:ppc64el libboost-graph-parallel1.74-dev:ppc64el libboost-iostreams1.74-dev:ppc64el libboost-locale1.74-dev:ppc64el libboost-log1.74-dev:ppc64el libboost-math1.74-dev:ppc64el libboost-mpi1.74-dev:ppc64el libboost-mpi-python1.74-dev:ppc64el libboost-numpy1.74-dev:ppc64el libboost-program-options1.74-dev:ppc64el libboost-python1.74-dev:ppc64el libboost-random1.74-dev:ppc64el libboost-regex1.74-dev:ppc64el libboost-serialization1.74-dev:ppc64el libboost-stacktrace1.74-dev:ppc64el libboost-system1.74-dev:ppc64el libboost-test1.74-dev:ppc64el libboost-thread1.74-dev:ppc64el libboost-timer1.74-dev:ppc64el libboost-type-erasure1.74-dev:ppc64el libboost-wave1.74-dev:ppc64el libboost1.74-tools-dev:ppc64el libmpfrc++-dev:ppc64el libntl-dev:ppc64el libboost-nowide1.74-dev:ppc64el glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el libnss-nis:ppc64el libnss-nisplus:ppc64el glibc-doc manpages-dev:ppc64el libcurl4-doc:ppc64el libgnutls28-dev:ppc64el libidn11-dev:ppc64el libkrb5-dev:ppc64el libldap2-dev:ppc64el librtmp-dev:ppc64el libssh2-1-dev:ppc64el gnupg git bzr gnutls-bin:ppc64el krb5-doc:ppc64el krb5-user:ppc64el libhdf5-doc:ppc64el liblzma-doc:ppc64el libssl-doc:ppc64el libstdc++-11-doc libstdc++-11-doc:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.9-venv python3.9-doc binfmt-support Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx ca-certificates:ppc64el ca-certificates libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:ppc64el libldap-common libldap-common:ppc64el libgpm2 publicsuffix publicsuffix:ppc64el libsasl2-modules libsasl2-modules:ppc64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils build-essential cmake cmake-data cpp-11-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross dpkg-dev dwz emacsen-common file g++ g++-11 g++-11-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-11-base:ppc64el gcc-11-cross-base gcc-11-powerpc64le-linux-gnu gcc-11-powerpc64le-linux-gnu-base gcc-12-base:ppc64el gcc-12-cross-base gcc-powerpc64le-linux-gnu gettext gettext-base googletest groff-base hdf5-helpers:ppc64el intltool-debian libaec-dev:ppc64el libaec0:ppc64el libarchive-zip-perl libarchive13 libasan6:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libblasr-dev:ppc64el libblasr5.3.5:ppc64el libboost-dev:ppc64el libboost1.74-dev:ppc64el libbrotli1 libbrotli1:ppc64el libbz2-1.0:ppc64el libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libcurl3-gnutls:ppc64el libcurl4 libcurl4:ppc64el libcurl4-gnutls-dev:ppc64el libdb5.3:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:ppc64el libdeflate0:ppc64el libdpkg-perl libelf1 libexpat1 libffi8:ppc64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:ppc64el libgcc-11-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgfortran5:ppc64el libglib2.0-0 libgmp10:ppc64el libgnutls30:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el libgtest-dev:ppc64el libhdf5-103-1:ppc64el libhdf5-cpp-103-1:ppc64el libhdf5-dev:ppc64el libhdf5-fortran-102:ppc64el libhdf5-hl-100:ppc64el libhdf5-hl-cpp-100:ppc64el libhdf5-hl-fortran-100:ppc64el libhogweed6:ppc64el libhts-dev:ppc64el libhts3:ppc64el libhtscodecs2:ppc64el libicu67 libidn2-0:ppc64el libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libjpeg-dev:ppc64el libjpeg62-turbo:ppc64el libjpeg62-turbo-dev:ppc64el libjsoncpp25 libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el libldap-2.4-2 libldap-2.4-2:ppc64el liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross liblzma-dev:ppc64el liblzma5:ppc64el libmagic-mgc libmagic1 libmpdec3 libncurses6 libnettle8:ppc64el libnghttp2-14 libnghttp2-14:ppc64el libnsl-dev libnsl-dev:ppc64el libnsl2:ppc64el libp11-kit0:ppc64el libpbbam-dev:ppc64el libpbbam1.7.0:ppc64el libpbcopper-dev:ppc64el libpbcopper1.9.3:ppc64el libpbcopper2.0.0:ppc64el libpbdata-dev:ppc64el libpbihdf-dev:ppc64el libpbseq-dev:ppc64el libperl5.34 libpipeline1 libprocps8 libpsl5 libpsl5:ppc64el libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0:ppc64el libquadmath0-ppc64el-cross librhash0 librtmp1 librtmp1:ppc64el libsasl2-2 libsasl2-2:ppc64el libsasl2-modules-db libsasl2-modules-db:ppc64el libsigsegv2 libsqlite3-0 libssh2-1 libssh2-1:ppc64el libssl-dev:ppc64el libssl1.1:ppc64el libstdc++-11-dev libstdc++-11-dev:ppc64el libstdc++-11-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libsz2:ppc64el libtasn1-6:ppc64el libtirpc-dev libtirpc-dev:ppc64el libtirpc3:ppc64el libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring2:ppc64el libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:ppc64el linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db media-types meson ninja-build perl perl-modules-5.34 pkg-config po-debconf procps python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal rpcsvc-proto sbuild-build-depends-main-dummy:ppc64el sensible-utils ucf zlib1g:ppc64el zlib1g-dev:ppc64el 0 upgraded, 218 newly installed, 0 to remove and 0 not upgraded. Need to get 175 MB of archives. After this operation, 819 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1008 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.34 all 5.34.0-3 [2850 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.34 amd64 5.34.0-3 [4208 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.34.0-3 [297 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b2 [19.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-minimal amd64 3.9.10-2 [803 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.4.7-1 [109 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9-minimal amd64 3.9.10-2 [1937 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.9.8-1 [38.5 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 media-types all 6.0.0 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.38.0-1 [827 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-stdlib amd64 3.9.10-2 [1683 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9 amd64 3.9.10-2 [487 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.9.8-1 [21.6 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.9.8-1 [38.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-12-base ppc64el 12-20220302-1 [206 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.3-2 [102 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.17-7+b1 [64.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.17-7+b1 [502 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.41-2 [295 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.41-2 [129 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.41-2 [66.9 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.3-1+b1 [144 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.5-1 [37.6 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.10.1-1 [1407 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.5-1.1 [823 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-powerpc64le-linux-gnu amd64 2.38-2 [2686 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.27-1.1 [118 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.33-7 [2289 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.2.0-18 [1959 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.2.0-18 [10.2 MB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.21.1 [1568 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.21.1 [2171 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.13+dfsg-1 [709 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.5.2-1 [345 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2+b3 [276 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-2 [74.2 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg-2 [111 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.59+dfsg-1+b1 [233 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.10.0-3 [178 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.82.0-1 [357 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp25 amd64 1.9.5-3 [78.5 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.4.2-1 [129 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.43.0-1 [136 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 dh-elpa-helper all 2.0.10 [11.3 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 emacsen-common all 3.0.4 [19.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.22.1-1 [1905 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.22.1-1+b1 [7990 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-powerpc64le-linux-gnu-base amd64 11.2.0-18cross1 [208 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-powerpc64le-linux-gnu amd64 11.2.0-18cross1 [7934 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-powerpc64le-linux-gnu amd64 4:11.2.0-2 [17.0 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-18cross1 [203 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-12-cross-base all 12-20220222-1cross1 [202 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-ppc64el-cross all 2.33-1cross1 [1594 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-ppc64el-cross all 12-20220222-1cross1 [31.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-ppc64el-cross all 12-20220222-1cross1 [121 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-ppc64el-cross all 12-20220222-1cross1 [28.5 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-ppc64el-cross all 12-20220222-1cross1 [9560 B] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-ppc64el-cross all 11.2.0-18cross1 [2031 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-ppc64el-cross all 12-20220222-1cross1 [980 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-ppc64el-cross all 11.2.0-18cross1 [2014 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-ppc64el-cross all 12-20220222-1cross1 [666 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-ppc64el-cross all 12-20220222-1cross1 [898 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0-ppc64el-cross all 12-20220222-1cross1 [149 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-ppc64el-cross all 11.2.0-18cross1 [1271 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-powerpc64le-linux-gnu amd64 11.2.0-18cross1 [15.7 MB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-powerpc64le-linux-gnu amd64 4:11.2.0-2 [1468 B] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-ppc64el-cross all 5.15.5-1cross1 [1569 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-ppc64el-cross all 2.33-1cross1 [2359 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-ppc64el-cross all 11.2.0-18cross1 [2053 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-powerpc64le-linux-gnu amd64 11.2.0-18cross1 [8817 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 g++-powerpc64le-linux-gnu amd64 4:11.2.0-2 [1184 B] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1 [337 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-ppc64el all 12.9 [6716 B] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.6 [193 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.186-1 [179 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.6 [1054 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-11-base ppc64el 11.2.0-18 [208 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 googletest all 1.11.0-3 [535 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main ppc64el hdf5-helpers ppc64el 1.10.7+repack-4 [42.8 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-s1 ppc64el 12-20220302-1 [31.4 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6 ppc64el 2.33-7 [2898 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main ppc64el libaec0 ppc64el 1.0.6-1 [22.5 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main ppc64el libsz2 ppc64el 1.0.6-1 [7816 B] Get:128 http://debian.oregonstate.edu/debian unstable/main ppc64el libaec-dev ppc64el 1.0.6-1 [21.8 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main ppc64el libasan6 ppc64el 11.2.0-18 [2037 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main ppc64el libatomic1 ppc64el 12-20220302-1 [9848 B] Get:131 http://debian.oregonstate.edu/debian unstable/main ppc64el libbrotli1 ppc64el 1.0.9-2+b3 [286 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main ppc64el libcom-err2 ppc64el 1.46.5-2 [76.2 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main ppc64el libkrb5support0 ppc64el 1.19.2-2 [69.5 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main ppc64el libk5crypto3 ppc64el 1.19.2-2 [125 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main ppc64el libkeyutils1 ppc64el 1.6.1-3 [16.7 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main ppc64el libssl1.1 ppc64el 1.1.1m-1 [1542 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main ppc64el libkrb5-3 ppc64el 1.19.2-2 [398 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main ppc64el libgssapi-krb5-2 ppc64el 1.19.2-2 [181 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main ppc64el libunistring2 ppc64el 1.0-1 [422 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main ppc64el libidn2-0 ppc64el 2.3.2-2 [97.9 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main ppc64el libgmp10 ppc64el 2:6.2.1+dfsg-3 [574 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main ppc64el libnettle8 ppc64el 3.7.3-1 [297 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main ppc64el libhogweed6 ppc64el 3.7.3-1 [324 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main ppc64el libffi8 ppc64el 3.4.2-4 [26.9 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main ppc64el libp11-kit0 ppc64el 0.24.0-6 [347 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main ppc64el libtasn1-6 ppc64el 4.18.0-4 [61.0 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main ppc64el libgnutls30 ppc64el 3.7.3-4+b1 [1354 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg1-0.8 [722 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg-2 [76.5 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg-2 [121 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main ppc64el libldap-2.4-2 ppc64el 2.4.59+dfsg-1+b1 [251 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main ppc64el libnghttp2-14 ppc64el 1.43.0-1 [85.0 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main ppc64el libpsl5 ppc64el 0.21.0-1.2 [59.3 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-2 [94.7 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2+b2 [65.9 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main ppc64el libssh2-1 ppc64el 1.10.0-3 [188 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main ppc64el libzstd1 ppc64el 1.4.8+dfsg-3 [343 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main ppc64el libcurl4 ppc64el 7.82.0-1 [376 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-103-1 ppc64el 1.10.7+repack-4 [1155 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++6 ppc64el 12-20220302-1 [712 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-cpp-103-1 ppc64el 1.10.7+repack-4 [142 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main ppc64el libbz2-1.0 ppc64el 1.0.8-5 [50.4 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main ppc64el libcurl3-gnutls ppc64el 7.82.0-1 [373 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main ppc64el libdeflate0 ppc64el 1.10-1 [50.3 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main ppc64el libhtscodecs2 ppc64el 1.2.1-1 [64.0 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main ppc64el liblzma5 ppc64el 5.2.5-2 [178 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main ppc64el libhts3 ppc64el 1.13+ds-2 [433 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main ppc64el libpbcopper1.9.3 ppc64el 1.9.3+dfsg-2 [581 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main ppc64el libpbbam1.7.0 ppc64el 1.7.0+dfsg-2 [679 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main ppc64el libpbcopper2.0.0 ppc64el 2.0.0+dfsg-2 [595 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main ppc64el libblasr5.3.5 ppc64el 5.3.5+dfsg-4 [1094 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main ppc64el libpbcopper-dev ppc64el 2.0.0+dfsg-2 [928 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main ppc64el libpbdata-dev ppc64el 5.3.5+dfsg-4 [41.2 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main ppc64el libblasr-dev ppc64el 5.3.5+dfsg-4 [2091 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main ppc64el libgomp1 ppc64el 12-20220302-1 [123 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main ppc64el libitm1 ppc64el 12-20220302-1 [29.0 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main ppc64el liblsan0 ppc64el 12-20220302-1 [981 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main ppc64el libtsan0 ppc64el 11.2.0-18 [2021 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main ppc64el libubsan1 ppc64el 12-20220302-1 [898 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main ppc64el libquadmath0 ppc64el 12-20220302-1 [149 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-11-dev ppc64el 11.2.0-18 [1271 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main ppc64el linux-libc-dev ppc64el 5.16.12-1 [1501 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt1 ppc64el 1:4.4.27-1.1 [97.4 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt-dev ppc64el 1:4.4.27-1.1 [131 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main ppc64el libtirpc3 ppc64el 1.3.2-2 [95.4 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main ppc64el libnsl2 ppc64el 1.3.0-2 [44.8 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main ppc64el libtirpc-dev ppc64el 1.3.2-2 [209 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main ppc64el libnsl-dev ppc64el 1.3.0-2 [73.6 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6-dev ppc64el 2.33-7 [2369 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++-11-dev ppc64el 11.2.0-18 [2048 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost1.74-dev ppc64el 1.74.0-14 [9533 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-dev ppc64el 1.74.0.3 [4548 B] Get:193 http://debian.oregonstate.edu/debian unstable/main ppc64el libcurl4-gnutls-dev ppc64el 7.82.0-1 [478 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main ppc64el libdeflate-dev ppc64el 1.10-1 [47.4 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main ppc64el libgfortran5 ppc64el 12-20220302-1 [496 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.70.4-1 [1405 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main ppc64el libgtest-dev ppc64el 1.11.0-3 [240 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-fortran-102 ppc64el 1.10.7+repack-4 [115 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-hl-100 ppc64el 1.10.7+repack-4 [92.7 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-hl-fortran-100 ppc64el 1.10.7+repack-4 [61.1 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-hl-cpp-100 ppc64el 1.10.7+repack-4 [40.6 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2 [195 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main ppc64el libjpeg62-turbo ppc64el 1:2.1.2-1 [170 kB] Get:204 http://debian.oregonstate.edu/debian unstable/main ppc64el libjpeg62-turbo-dev ppc64el 1:2.1.2-1 [294 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main ppc64el libjpeg-dev ppc64el 1:2.1.2-1 [74.7 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main ppc64el libssl-dev ppc64el 1.1.1m-1 [1847 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-dev ppc64el 1.10.7+repack-4 [2730 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main ppc64el liblzma-dev ppc64el 5.2.5-2 [242 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main ppc64el libhts-dev ppc64el 1.13+ds-2 [4106 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main ppc64el libpbbam-dev ppc64el 1.7.0+dfsg-2 [87.2 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main ppc64el libpbihdf-dev ppc64el 5.3.5+dfsg-4 [47.7 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main ppc64el libpbseq-dev ppc64el 5.3.5+dfsg-4 [5500 B] Get:213 http://debian.oregonstate.edu/debian unstable/main amd64 ninja-build amd64 1.10.1-1 [112 kB] Get:214 http://debian.oregonstate.edu/debian unstable/main amd64 python3-pkg-resources all 59.6.0-1.2 [196 kB] Get:215 http://debian.oregonstate.edu/debian unstable/main amd64 python3-lib2to3 all 3.9.10-1 [79.4 kB] Get:216 http://debian.oregonstate.edu/debian unstable/main amd64 python3-distutils all 3.9.10-1 [146 kB] Get:217 http://debian.oregonstate.edu/debian unstable/main amd64 meson all 0.61.2-1 [517 kB] Get:218 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 175 MB in 2s (78.5 MB/s) Selecting previously unselected package perl-modules-5.34. (Reading database ... 10596 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.34_5.34.0-3_all.deb ... Unpacking perl-modules-5.34 (5.34.0-3) ... Selecting previously unselected package libperl5.34:amd64. Preparing to unpack .../1-libperl5.34_5.34.0-3_amd64.deb ... Unpacking libperl5.34:amd64 (5.34.0-3) ... Selecting previously unselected package perl. Preparing to unpack .../2-perl_5.34.0-3_amd64.deb ... Unpacking perl (5.34.0-3) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../3-liblocale-gettext-perl_1.07-4+b2_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../4-libpython3.9-minimal_3.9.10-2_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.10-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../5-libexpat1_2.4.7-1_amd64.deb ... 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Selecting previously unselected package libnettle8:ppc64el. Preparing to unpack .../126-libnettle8_3.7.3-1_ppc64el.deb ... Unpacking libnettle8:ppc64el (3.7.3-1) ... Selecting previously unselected package libhogweed6:ppc64el. Preparing to unpack .../127-libhogweed6_3.7.3-1_ppc64el.deb ... Unpacking libhogweed6:ppc64el (3.7.3-1) ... Selecting previously unselected package libffi8:ppc64el. Preparing to unpack .../128-libffi8_3.4.2-4_ppc64el.deb ... Unpacking libffi8:ppc64el (3.4.2-4) ... Selecting previously unselected package libp11-kit0:ppc64el. Preparing to unpack .../129-libp11-kit0_0.24.0-6_ppc64el.deb ... Unpacking libp11-kit0:ppc64el (0.24.0-6) ... Selecting previously unselected package libtasn1-6:ppc64el. Preparing to unpack .../130-libtasn1-6_4.18.0-4_ppc64el.deb ... Unpacking libtasn1-6:ppc64el (4.18.0-4) ... Selecting previously unselected package libgnutls30:ppc64el. Preparing to unpack .../131-libgnutls30_3.7.3-4+b1_ppc64el.deb ... 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Selecting previously unselected package libpsl5:ppc64el. Preparing to unpack .../137-libpsl5_0.21.0-1.2_ppc64el.deb ... Unpacking libpsl5:ppc64el (0.21.0-1.2) ... Selecting previously unselected package zlib1g:ppc64el. Preparing to unpack .../138-zlib1g_1%3a1.2.11.dfsg-2_ppc64el.deb ... Unpacking zlib1g:ppc64el (1:1.2.11.dfsg-2) ... Selecting previously unselected package librtmp1:ppc64el. Preparing to unpack .../139-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_ppc64el.deb ... Unpacking librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:ppc64el. Preparing to unpack .../140-libssh2-1_1.10.0-3_ppc64el.deb ... Unpacking libssh2-1:ppc64el (1.10.0-3) ... Selecting previously unselected package libzstd1:ppc64el. Preparing to unpack .../141-libzstd1_1.4.8+dfsg-3_ppc64el.deb ... Unpacking libzstd1:ppc64el (1.4.8+dfsg-3) ... Selecting previously unselected package libcurl4:ppc64el. Preparing to unpack .../142-libcurl4_7.82.0-1_ppc64el.deb ... 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Selecting previously unselected package libdeflate0:ppc64el. Preparing to unpack .../148-libdeflate0_1.10-1_ppc64el.deb ... Unpacking libdeflate0:ppc64el (1.10-1) ... Selecting previously unselected package libhtscodecs2:ppc64el. Preparing to unpack .../149-libhtscodecs2_1.2.1-1_ppc64el.deb ... Unpacking libhtscodecs2:ppc64el (1.2.1-1) ... Selecting previously unselected package liblzma5:ppc64el. Preparing to unpack .../150-liblzma5_5.2.5-2_ppc64el.deb ... Unpacking liblzma5:ppc64el (5.2.5-2) ... Selecting previously unselected package libhts3:ppc64el. Preparing to unpack .../151-libhts3_1.13+ds-2_ppc64el.deb ... Unpacking libhts3:ppc64el (1.13+ds-2) ... Selecting previously unselected package libpbcopper1.9.3:ppc64el. Preparing to unpack .../152-libpbcopper1.9.3_1.9.3+dfsg-2_ppc64el.deb ... Unpacking libpbcopper1.9.3:ppc64el (1.9.3+dfsg-2) ... Selecting previously unselected package libpbbam1.7.0:ppc64el. Preparing to unpack .../153-libpbbam1.7.0_1.7.0+dfsg-2_ppc64el.deb ... 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Selecting previously unselected package libboost-dev:ppc64el. Preparing to unpack .../176-libboost-dev_1.74.0.3_ppc64el.deb ... Unpacking libboost-dev:ppc64el (1.74.0.3) ... Selecting previously unselected package libcurl4-gnutls-dev:ppc64el. Preparing to unpack .../177-libcurl4-gnutls-dev_7.82.0-1_ppc64el.deb ... Unpacking libcurl4-gnutls-dev:ppc64el (7.82.0-1) ... Selecting previously unselected package libdeflate-dev:ppc64el. Preparing to unpack .../178-libdeflate-dev_1.10-1_ppc64el.deb ... Unpacking libdeflate-dev:ppc64el (1.10-1) ... Selecting previously unselected package libgfortran5:ppc64el. Preparing to unpack .../179-libgfortran5_12-20220302-1_ppc64el.deb ... Unpacking libgfortran5:ppc64el (12-20220302-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../180-libglib2.0-0_2.70.4-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.70.4-1) ... Selecting previously unselected package libgtest-dev:ppc64el. 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Unpacking libhdf5-dev:ppc64el (1.10.7+repack-4) ... Selecting previously unselected package liblzma-dev:ppc64el. Preparing to unpack .../192-liblzma-dev_5.2.5-2_ppc64el.deb ... Unpacking liblzma-dev:ppc64el (5.2.5-2) ... Selecting previously unselected package libhts-dev:ppc64el. Preparing to unpack .../193-libhts-dev_1.13+ds-2_ppc64el.deb ... Unpacking libhts-dev:ppc64el (1.13+ds-2) ... Selecting previously unselected package libpbbam-dev:ppc64el. Preparing to unpack .../194-libpbbam-dev_1.7.0+dfsg-2_ppc64el.deb ... Unpacking libpbbam-dev:ppc64el (1.7.0+dfsg-2) ... Selecting previously unselected package libpbihdf-dev:ppc64el. Preparing to unpack .../195-libpbihdf-dev_5.3.5+dfsg-4_ppc64el.deb ... Unpacking libpbihdf-dev:ppc64el (5.3.5+dfsg-4) ... Selecting previously unselected package libpbseq-dev:ppc64el. Preparing to unpack .../196-libpbseq-dev_5.3.5+dfsg-4_ppc64el.deb ... Unpacking libpbseq-dev:ppc64el (5.3.5+dfsg-4) ... Selecting previously unselected package ninja-build. 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Setting up gettext-base (0.21-4) ... Setting up file (1:5.41-2) ... Setting up perl-modules-5.34 (5.34.0-3) ... Setting up libgomp1-ppc64el-cross (12-20220222-1cross1) ... Setting up googletest (1.11.0-3) ... Setting up ninja-build (1.10.1-1) ... Setting up gcc-12-base:ppc64el (12-20220302-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-2) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up libuv1:amd64 (1.43.0-1) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up emacsen-common (3.0.4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up dh-elpa-helper (2.0.10) ... Setting up libncurses6:amd64 (6.3-2) ... Setting up libsigsegv2:amd64 (2.14-1) ... Setting up gcc-11-powerpc64le-linux-gnu-base:amd64 (11.2.0-18cross1) ... Setting up autopoint (0.21-4) ... Setting up libjsoncpp25:amd64 (1.9.5-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-2) ... Setting up libitm1-ppc64el-cross (12-20220222-1cross1) ... Setting up gcc-11-cross-base (11.2.0-18cross1) ... Setting up libatomic1-ppc64el-cross (12-20220222-1cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up librhash0:amd64 (1.4.2-1) ... Setting up libcrypt-dev:amd64 (1:4.4.27-1.1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up linux-libc-dev-ppc64el-cross (5.15.5-1cross1) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libc6-dev:amd64 (2.33-7) ... Setting up libssh2-1:amd64 (1.10.0-3) ... Setting up cmake-data (3.22.1-1) ... Setting up libgcc-s1-ppc64el-cross (12-20220222-1cross1) ... Setting up binutils-powerpc64le-linux-gnu (2.38-2) ... Setting up libelf1:amd64 (0.186-1) ... Setting up libxml2:amd64 (2.9.13+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up libprocps8:amd64 (2:3.3.17-7+b1) ... Setting up libpython3.9-stdlib:amd64 (3.9.10-2) ... Setting up libpython3-stdlib:amd64 (3.9.8-1) ... Setting up libperl5.34:amd64 (5.34.0-3) ... Setting up gettext (0.21-4) ... Setting up libasan6-ppc64el-cross (11.2.0-18cross1) ... Setting up libgtest-dev:ppc64el (1.11.0-3) ... Setting up libc6-dev-ppc64el-cross (2.33-1cross1) ... Setting up libtool (2.4.6-15) ... Setting up libquadmath0-ppc64el-cross (12-20220222-1cross1) ... Setting up libarchive13:amd64 (3.5.2-1) ... Setting up libldap-2.4-2:amd64 (2.4.59+dfsg-1+b1) ... Setting up m4 (1.4.18-5) ... Setting up cpp-11-powerpc64le-linux-gnu (11.2.0-18cross1) ... Setting up liblsan0-ppc64el-cross (12-20220222-1cross1) ... Setting up perl (5.34.0-3) ... Setting up libtsan0-ppc64el-cross (11.2.0-18cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.21.1) ... Setting up libstdc++6-ppc64el-cross (12-20220222-1cross1) ... Setting up autoconf (2.71-2) ... Setting up libstdc++-11-dev:amd64 (11.2.0-18) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up procps (2:3.3.17-7+b1) ... Setting up libcurl4:amd64 (7.82.0-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up python3.9 (3.9.10-2) ... Setting up cpp-powerpc64le-linux-gnu (4:11.2.0-2) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up g++-11 (11.2.0-18) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libubsan1-ppc64el-cross (12-20220222-1cross1) ... Setting up libdebhelper-perl (13.6) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up python3 (3.9.8-1) ... Setting up man-db (2.10.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.21.1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up pkg-config (0.29.2-1) ... Setting up g++ (4:11.2.0-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libgcc-11-dev-ppc64el-cross (11.2.0-18cross1) ... Setting up cmake (3.22.1-1+b1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up python3-lib2to3 (3.9.10-1) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.9.10-1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gcc-11-powerpc64le-linux-gnu (11.2.0-18cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up meson (0.61.2-1) ... Setting up libstdc++-11-dev-ppc64el-cross (11.2.0-18cross1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-powerpc64le-linux-gnu (4:11.2.0-2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up g++-11-powerpc64le-linux-gnu (11.2.0-18cross1) ... Setting up g++-powerpc64le-linux-gnu (4:11.2.0-2) ... Setting up debhelper (13.6) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-ppc64el (12.9) ... Setting up libgcc-s1:ppc64el (12-20220302-1) ... Setting up libc6:ppc64el (2.33-7) ... Setting up libffi8:ppc64el (3.4.2-4) ... Setting up libtasn1-6:ppc64el (4.18.0-4) ... Setting up libbz2-1.0:ppc64el (1.0.8-5) ... Setting up libdb5.3:ppc64el (5.3.28+dfsg1-0.8) ... Setting up libstdc++6:ppc64el (12-20220302-1) ... Setting up liblsan0:ppc64el (12-20220302-1) ... Setting up libitm1:ppc64el (12-20220302-1) ... Setting up libtsan0:ppc64el (11.2.0-18) ... Setting up libhtscodecs2:ppc64el (1.2.1-1) ... Setting up libzstd1:ppc64el (1.4.8+dfsg-3) ... Setting up libkeyutils1:ppc64el (1.6.1-3) ... Setting up liblzma5:ppc64el (5.2.5-2) ... Setting up libpbcopper2.0.0:ppc64el (2.0.0+dfsg-2) ... Setting up libssl1.1:ppc64el (1.1.1m-1) ... Setting up libbrotli1:ppc64el (1.0.9-2+b3) ... Setting up libnghttp2-14:ppc64el (1.43.0-1) ... Setting up libunistring2:ppc64el (1.0-1) ... Setting up libdeflate0:ppc64el (1.10-1) ... Setting up zlib1g:ppc64el (1:1.2.11.dfsg-2) ... Setting up libcrypt1:ppc64el (1:4.4.27-1.1) ... Setting up libidn2-0:ppc64el (2.3.2-2) ... Setting up libcom-err2:ppc64el (1.46.5-2) ... Setting up libgomp1:ppc64el (12-20220302-1) ... Setting up libaec0:ppc64el (1.0.6-1) ... Setting up libasan6:ppc64el (11.2.0-18) ... Setting up libkrb5support0:ppc64el (1.19.2-2) ... Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg-2) ... Setting up libjpeg62-turbo:ppc64el (1:2.1.2-1) ... Setting up libnettle8:ppc64el (3.7.3-1) ... Setting up libgmp10:ppc64el (2:6.2.1+dfsg-3) ... Setting up libquadmath0:ppc64el (12-20220302-1) ... Setting up libp11-kit0:ppc64el (0.24.0-6) ... Setting up libssl-dev:ppc64el (1.1.1m-1) ... Setting up libatomic1:ppc64el (12-20220302-1) ... Setting up libpbcopper-dev:ppc64el (2.0.0+dfsg-2) ... Setting up libk5crypto3:ppc64el (1.19.2-2) ... Setting up libsasl2-2:ppc64el (2.1.28+dfsg-2) ... Setting up libgfortran5:ppc64el (12-20220302-1) ... Setting up liblzma-dev:ppc64el (5.2.5-2) ... Setting up libubsan1:ppc64el (12-20220302-1) ... Setting up libgcc-11-dev:ppc64el (11.2.0-18) ... Setting up libcrypt-dev:ppc64el (1:4.4.27-1.1) ... Setting up libssh2-1:ppc64el (1.10.0-3) ... Setting up libkrb5-3:ppc64el (1.19.2-2) ... Setting up libpbcopper1.9.3:ppc64el (1.9.3+dfsg-2) ... Setting up libdeflate-dev:ppc64el (1.10-1) ... Setting up libsz2:ppc64el (1.0.6-1) ... Setting up libpsl5:ppc64el (0.21.0-1.2) ... Setting up libhogweed6:ppc64el (3.7.3-1) ... Setting up libaec-dev:ppc64el (1.0.6-1) ... Setting up libpbdata-dev:ppc64el (5.3.5+dfsg-4) ... Setting up libgnutls30:ppc64el (3.7.3-4+b1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:ppc64el (1.19.2-2) ... Setting up libtirpc3:ppc64el (1.3.2-2) ... Setting up libldap-2.4-2:ppc64el (2.4.59+dfsg-1+b1) ... Setting up libcurl3-gnutls:ppc64el (7.82.0-1) ... Setting up libcurl4-gnutls-dev:ppc64el (7.82.0-1) ... Setting up libtirpc-dev:ppc64el (1.3.2-2) ... Setting up libnsl2:ppc64el (1.3.0-2) ... Setting up libcurl4:ppc64el (7.82.0-1) ... Setting up libhts3:ppc64el (1.13+ds-2) ... Setting up libhdf5-103-1:ppc64el (1.10.7+repack-4) ... Setting up libnsl-dev:ppc64el (1.3.0-2) ... Setting up libhdf5-cpp-103-1:ppc64el (1.10.7+repack-4) ... Setting up libc6-dev:ppc64el (2.33-7) ... Setting up libpbbam1.7.0:ppc64el (1.7.0+dfsg-2) ... Setting up libhdf5-hl-100:ppc64el (1.10.7+repack-4) ... Setting up libblasr5.3.5:ppc64el (5.3.5+dfsg-4) ... Setting up libhdf5-hl-cpp-100:ppc64el (1.10.7+repack-4) ... Setting up libjpeg62-turbo-dev:ppc64el (1:2.1.2-1) ... Setting up libblasr-dev:ppc64el (5.3.5+dfsg-4) ... Setting up libhdf5-fortran-102:ppc64el (1.10.7+repack-4) ... Setting up libstdc++-11-dev:ppc64el (11.2.0-18) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-2) ... Setting up libhdf5-hl-fortran-100:ppc64el (1.10.7+repack-4) ... Setting up libboost1.74-dev:ppc64el (1.74.0-14) ... Setting up libjpeg-dev:ppc64el (1:2.1.2-1) ... Setting up libhts-dev:ppc64el (1.13+ds-2) ... Setting up libhdf5-dev:ppc64el (1.10.7+repack-4) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/powerpc64le-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libboost-dev:ppc64el (1.74.0.3) ... Setting up libpbbam-dev:ppc64el (1.7.0+dfsg-2) ... Setting up libpbihdf-dev:ppc64el (5.3.5+dfsg-4) ... Setting up libpbseq-dev:ppc64el (5.3.5+dfsg-4) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.33-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.38-2 dpkg-dev_1.21.1 g++-11_11.2.0-18 gcc-11_11.2.0-18 libc6-dev_2.33-7 libstdc++-11-dev_11.2.0-18 libstdc++-11-dev-ppc64el-cross_11.2.0-18cross1 libstdc++6_12-20220302-1 libstdc++6-ppc64el-cross_12-20220222-1cross1 linux-libc-dev_5.16.12-1 Package versions: adduser_3.120 apt_2.4.1 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-2 binutils-common_2.38-2 binutils-powerpc64le-linux-gnu_2.38-2 binutils-x86-64-linux-gnu_2.38-2 bsdextrautils_2.37.3-1+b1 bsdutils_1:2.37.3-1+b1 build-essential_12.9 bzip2_1.0.8-5 cmake_3.22.1-1+b1 cmake-data_3.22.1-1 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.2.0-18 cpp-11-powerpc64le-linux-gnu_11.2.0-18cross1 cpp-8_8.4.0-7 cpp-powerpc64le-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-ppc64el_12.9 dash_0.5.11+git20210903+057cd650a4ed-7 debconf_1.5.79 debhelper_13.6 debian-archive-keyring_2021.1.1 debianutils_5.7-0.1 dh-autoreconf_20 dh-elpa-helper_2.0.10 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.1 dwz_0.14-1 e2fsprogs_1.46.5-2 emacsen-common_3.0.4 fakeroot_1.28-1 fdisk_2.37.3-1+b1 file_1:5.41-2 findutils_4.9.0-2 g++_4:11.2.0-2 g++-11_11.2.0-18 g++-11-powerpc64le-linux-gnu_11.2.0-18cross1 g++-powerpc64le-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-14 gcc-11_11.2.0-18 gcc-11-base_11.2.0-18 gcc-11-cross-base_11.2.0-18cross1 gcc-11-powerpc64le-linux-gnu_11.2.0-18cross1 gcc-11-powerpc64le-linux-gnu-base_11.2.0-18cross1 gcc-12-base_12-20220302-1 gcc-12-cross-base_12-20220222-1cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-5 gcc-powerpc64le-linux-gnu_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 googletest_1.11.0-3 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hdf5-helpers_1.10.7+repack-4 hostname_3.23 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.4.1 libarchive-zip-perl_1.68-1 libarchive13_3.5.2-1 libasan5_9.4.0-5 libasan6_11.2.0-18 libasan6-ppc64el-cross_11.2.0-18cross1 libatomic1_12-20220302-1 libatomic1-ppc64el-cross_12-20220222-1cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1 libbinutils_2.38-2 libblasr-dev_5.3.5+dfsg-4 libblasr5.3.5_5.3.5+dfsg-4 libblkid1_2.37.3-1+b1 libboost-dev_1.74.0.3 libboost1.74-dev_1.74.0-14 libbrotli1_1.0.9-2+b3 libbz2-1.0_1.0.8-5 libc-bin_2.33-7 libc-dev-bin_2.33-7 libc6_2.33-7 libc6-dev_2.33-7 libc6-dev-ppc64el-cross_2.33-1cross1 libc6-ppc64el-cross_2.33-1cross1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_12-20220302-1 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.38-2 libctf0_2.38-2 libcurl3-gnutls_7.82.0-1 libcurl4_7.82.0-1 libcurl4-gnutls-dev_7.82.0-1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdebian-dpkgcross-perl_2.6.18+nmu2 libdeflate-dev_1.10-1 libdeflate0_1.10-1 libdpkg-perl_1.21.1 libelf1_0.186-1 libexpat1_2.4.7-1 libext2fs2_1.46.5-2 libfakeroot_1.28-1 libfdisk1_2.37.3-1+b1 libffi6_3.2.1-9 libffi8_3.4.2-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.23-1 libgcc-11-dev_11.2.0-18 libgcc-11-dev-ppc64el-cross_11.2.0-18cross1 libgcc-s1_12-20220302-1 libgcc-s1-ppc64el-cross_12-20220222-1cross1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12-20220302-1 libglib2.0-0_2.70.4-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.3-4+b1 libgomp1_12-20220302-1 libgomp1-ppc64el-cross_12-20220222-1cross1 libgpg-error0_1.43-3 libgssapi-krb5-2_1.19.2-2 libgtest-dev_1.11.0-3 libhdf5-103-1_1.10.7+repack-4 libhdf5-cpp-103-1_1.10.7+repack-4 libhdf5-dev_1.10.7+repack-4 libhdf5-fortran-102_1.10.7+repack-4 libhdf5-hl-100_1.10.7+repack-4 libhdf5-hl-cpp-100_1.10.7+repack-4 libhdf5-hl-fortran-100_1.10.7+repack-4 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.3-1 libhts-dev_1.13+ds-2 libhts3_1.13+ds-2 libhtscodecs2_1.2.1-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.24-2 libitm1_12-20220302-1 libitm1-ppc64el-cross_12-20220222-1cross1 libjpeg-dev_1:2.1.2-1 libjpeg62-turbo_1:2.1.2-1 libjpeg62-turbo-dev_1:2.1.2-1 libjsoncpp25_1.9.5-3 libk5crypto3_1.19.2-2 libkeyutils1_1.6.1-3 libkrb5-3_1.19.2-2 libkrb5support0_1.19.2-2 libldap-2.4-2_2.4.59+dfsg-1+b1 liblocale-gettext-perl_1.07-4+b2 liblsan0_12-20220302-1 liblsan0-ppc64el-cross_12-20220222-1cross1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.3-1+b1 libmpc3_1.2.1-1 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncurses6_6.3-2 libncursesw6_6.3-2 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpbbam-dev_1.7.0+dfsg-2 libpbbam1.7.0_1.7.0+dfsg-2 libpbcopper-dev_2.0.0+dfsg-2 libpbcopper1.9.3_1.9.3+dfsg-2 libpbcopper2.0.0_2.0.0+dfsg-2 libpbdata-dev_5.3.5+dfsg-4 libpbihdf-dev_5.3.5+dfsg-4 libpbseq-dev_5.3.5+dfsg-4 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.34_5.34.0-3 libpipeline1_1.5.5-1 libprocps8_2:3.3.17-7+b1 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.8-1 libpython3.9-minimal_3.9.10-2 libpython3.9-stdlib_3.9.10-2 libquadmath0_12-20220302-1 libquadmath0-ppc64el-cross_12-20220222-1cross1 libreadline8_8.1.2-1 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-2 libsasl2-modules-db_2.1.28+dfsg-2 libseccomp2_2.5.3-2 libselinux1_3.3-1+b1 libsemanage-common_3.3-1 libsemanage1_3.1-2 libsemanage2_3.3-1+b2 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.37.3-1+b1 libsqlite3-0_3.38.0-1 libss2_1.46.5-2 libssh2-1_1.10.0-3 libssl-dev_1.1.1m-1 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-18 libstdc++-11-dev-ppc64el-cross_11.2.0-18cross1 libstdc++6_12-20220302-1 libstdc++6-ppc64el-cross_12-20220222-1cross1 libsub-override-perl_0.09-2 libsystemd0_250.3-2 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-18 libtsan0-ppc64el-cross_11.2.0-18cross1 libubsan1_12-20220302-1 libubsan1-ppc64el-cross_12-20220222-1cross1 libuchardet0_0.0.7-1 libudev1_250.3-2 libunistring2_1.0-1 libuuid1_2.37.3-1+b1 libuv1_1.43.0-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.13+dfsg-1 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.16.12-1 linux-libc-dev-ppc64el-cross_5.15.5-1cross1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.1-1 mawk_1.3.4.20200120-3+b1 media-types_6.0.0 meson_0.61.2-1 mount_2.37.3-1+b1 ncurses-base_6.3-2 ncurses-bin_6.3-2 ninja-build_1.10.1-1 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.28_5.28.1-6 perl-modules-5.34_5.34.0-3 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 procps_2:3.3.17-7+b1 python3_3.9.8-1 python3-distutils_3.9.10-1 python3-lib2to3_3.9.10-1 python3-minimal_3.9.8-1 python3-pkg-resources_59.6.0-1.2 python3.9_3.9.10-2 python3.9-minimal_3.9.10-2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.3-1+b1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: blasr Binary: blasr Architecture: any Version: 5.3.5+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/blasr Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/blasr Vcs-Git: https://salsa.debian.org/med-team/blasr.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), python3:any, meson, cmake, pkg-config, libboost-dev, libhdf5-dev, zlib1g-dev, libpbseq-dev, libpbbam-dev, libpbdata-dev, libpbcopper-dev, libgtest-dev, libblasr-dev (>= 5.3.4+dfsg-4~) Package-List: blasr deb science optional arch=any Checksums-Sha1: 334132438305cfaf3d7ee6208bcb4cc4b493be5d 124460 blasr_5.3.5+dfsg.orig.tar.xz 1927196522748c7274ab89890173f8b672c53510 11116 blasr_5.3.5+dfsg-4.debian.tar.xz Checksums-Sha256: 765ac47ae74f56e3bee17e2a3c81d404faf7419e42eb45bc9f2a71c7a5942205 124460 blasr_5.3.5+dfsg.orig.tar.xz 0492eab7c997825462e85f0895eedf2703d2afdacb18c38c1f8300fbccedfcc5 11116 blasr_5.3.5+dfsg-4.debian.tar.xz Files: 46c888e8f9c606d840b0d9dcc8036b21 124460 blasr_5.3.5+dfsg.orig.tar.xz c1f3cb6b0371de08ddcea3017a3a9fd4 11116 blasr_5.3.5+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmIo/HoSHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxGnMP/3YE/z88BlTrkyDu8gQirTgF9kENVQue W9vNPtHoZmGX7vdaoXOVEyD94hK3/6T1ANWURhz0Ezp84FhH1ZmuI+S6IV6L/kkm 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signature ./blasr_5.3.5+dfsg-4.dsc dpkg-source: info: extracting blasr in /<> dpkg-source: info: unpacking blasr_5.3.5+dfsg.orig.tar.xz dpkg-source: info: unpacking blasr_5.3.5+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_pblibs.patch dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-b3f0ea83-2534-47bd-bc30-09bee9b7181a SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package blasr dpkg-buildpackage: info: source version 5.3.5+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary-arch dh binary-arch --buildsystem=meson dh_update_autotools_config -a -O--buildsystem=meson dh_autoreconf -a -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' LDFLAGS="-L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu/hdf5/serial -lhdf5_cpp -lhdf5 -Wl,-z,relro" CPPFLAGS="-isystem /usr/include/hdf5/serial" dh_auto_configure -- -Dtests=false cd obj-powerpc64le-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/powerpc64le-linux-gnu --cross-file /<>/blasr-5.3.5\+dfsg/debian/.debhelper/generated/_source/meson-cross-file.conf -Dtests=false WARNING: Unknown CPU family powerpc64le, please report this at https://github.com/mesonbuild/meson/issues/new DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. The Meson build system Version: 0.61.2 Source dir: /<> Build dir: /<>/obj-powerpc64le-linux-gnu Build type: cross build Project name: blasr Project version: 5.3.5 C++ compiler for the host machine: /usr/bin/powerpc64le-linux-gnu-g++ (gcc 11.2.0 "powerpc64le-linux-gnu-g++ (Debian 11.2.0-18) 11.2.0") C++ linker for the host machine: /usr/bin/powerpc64le-linux-gnu-g++ ld.bfd 2.38 C++ compiler for the build machine: c++ (gcc 11.2.0 "c++ (Debian 11.2.0-18) 11.2.0") C++ linker for the build machine: c++ ld.bfd 2.38 Build machine cpu family: x86_64 Build machine cpu: x86_64 Host machine cpu family: powerpc64le Host machine cpu: ppc64el Target machine cpu family: powerpc64le Target machine cpu: ppc64el Compiler for C++ supports arguments -Wno-delete-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Run-time dependency threads found: YES Found pkg-config: /usr/bin/powerpc64le-linux-gnu-pkg-config (0.29.2) Run-time dependency Boost found: YES 1.74.0 (/usr/include) Library pbbam found: YES Run-time dependency libblasr found: YES 5.3.5 Run-time dependency zlib found: YES 1.2.11 Run-time dependency htslib found: YES 1.13+ds Library pbcopper found: YES Configuring BlasrVersion.h using configuration Build targets in project: 5 blasr 5.3.5 User defined options Cross files : /<>/debian/.debhelper/generated/_source/meson-cross-file.conf buildtype : plain libdir : lib/powerpc64le-linux-gnu localstatedir: /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload tests : false Found ninja-1.10.1 at /usr/bin/ninja make[1]: Leaving directory '/<>' dh_auto_build -a -O--buildsystem=meson cd obj-powerpc64le-linux-gnu && LC_ALL=C.UTF-8 ninja -j1 -v [1/25] /usr/bin/meson --internal vcstagger ../BlasrGitHash.h.in BlasrGitHash.h '' /<> @BLASR_GIT_SHA1@ '(.*)' /<>/git describe --always '--dirty=*' [2/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o -MF libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o.d -o libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o -c ../extrautils/SuffixArrayToBWT.cpp In file included from ../extrautils/SuffixArrayToBWT.cpp:4: /usr/include/pbseq/alignment/bwt/BWT.hpp: In member function ‘void Bwt::InitializeDNACharacterCount() [with T_BWT_Sequence = PackedDNASequence; T_DNASequence = FASTASequence]’: /usr/include/pbseq/alignment/bwt/BWT.hpp:192:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 192 | charCount[0]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:193:17: note: here 193 | case 0: //A | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:194:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 194 | charCount[1]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:195:17: note: here 195 | case 1: //C | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:196:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 196 | charCount[2]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:197:17: note: here 197 | case 2: //G | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:198:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 198 | charCount[3]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:199:17: note: here 199 | case 3: //T | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:200:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 200 | charCount[4]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:201:17: note: here 201 | case 4: //N | ^~~~ [3/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_BwtToSuffixArray.cpp.o -MF libblasr_impl.a.p/extrautils_BwtToSuffixArray.cpp.o.d -o libblasr_impl.a.p/extrautils_BwtToSuffixArray.cpp.o -c ../extrautils/BwtToSuffixArray.cpp [4/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SWMatcher.cpp.o -MF libblasr_impl.a.p/extrautils_SWMatcher.cpp.o.d -o libblasr_impl.a.p/extrautils_SWMatcher.cpp.o -c ../extrautils/SWMatcher.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../extrautils/SWMatcher.cpp:6: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/powerpc64le-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/powerpc64le-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../extrautils/SWMatcher.cpp:6: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../extrautils/SWMatcher.cpp:6: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/powerpc64le-linux-gnu/include/c++/11/powerpc64le-linux-gnu/bits/c++allocator.h:33, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/allocator.h:46, from /usr/powerpc64le-linux-gnu/include/c++/11/string:41, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/locale_classes.h:40, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/ios_base.h:41, from /usr/powerpc64le-linux-gnu/include/c++/11/ios:42, from /usr/powerpc64le-linux-gnu/include/c++/11/ostream:38, from /usr/powerpc64le-linux-gnu/include/c++/11/iostream:39, from ../extrautils/SWMatcher.cpp:2: /usr/powerpc64le-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [5/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SAModify.cpp.o -MF libblasr_impl.a.p/extrautils_SAModify.cpp.o.d -o libblasr_impl.a.p/extrautils_SAModify.cpp.o -c ../extrautils/SAModify.cpp [6/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_ExciseRepeats.cpp.o -MF libblasr_impl.a.p/extrautils_ExciseRepeats.cpp.o.d -o libblasr_impl.a.p/extrautils_ExciseRepeats.cpp.o -c ../extrautils/ExciseRepeats.cpp [7/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_StoreQualityByContextFromCmpH5.cpp.o -MF libblasr_impl.a.p/extrautils_StoreQualityByContextFromCmpH5.cpp.o.d -o libblasr_impl.a.p/extrautils_StoreQualityByContextFromCmpH5.cpp.o -c ../extrautils/StoreQualityByContextFromCmpH5.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/format/StickAlignmentPrinter.hpp:8, from ../extrautils/StoreQualityByContextFromCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/powerpc64le-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/powerpc64le-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/format/StickAlignmentPrinter.hpp:8, from ../extrautils/StoreQualityByContextFromCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/format/StickAlignmentPrinter.hpp:8, from ../extrautils/StoreQualityByContextFromCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/powerpc64le-linux-gnu/include/c++/11/powerpc64le-linux-gnu/bits/c++allocator.h:33, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/allocator.h:46, from /usr/powerpc64le-linux-gnu/include/c++/11/vector:64, from /usr/include/pbseq/alignment/datastructures/alignment/CmpFile.hpp:4, from ../extrautils/StoreQualityByContextFromCmpH5.cpp:1: /usr/powerpc64le-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [8/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SALS.cpp.o -MF libblasr_impl.a.p/extrautils_SALS.cpp.o.d -o libblasr_impl.a.p/extrautils_SALS.cpp.o -c ../extrautils/SALS.cpp [9/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SimpleShredder.cpp.o -MF libblasr_impl.a.p/extrautils_SimpleShredder.cpp.o.d -o libblasr_impl.a.p/extrautils_SimpleShredder.cpp.o -c ../extrautils/SimpleShredder.cpp [10/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_Evolve.cpp.o -MF libblasr_impl.a.p/extrautils_Evolve.cpp.o.d -o libblasr_impl.a.p/extrautils_Evolve.cpp.o -c ../extrautils/Evolve.cpp [11/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_BuildSequenceDB.cpp.o -MF libblasr_impl.a.p/extrautils_BuildSequenceDB.cpp.o.d -o libblasr_impl.a.p/extrautils_BuildSequenceDB.cpp.o -c ../extrautils/BuildSequenceDB.cpp [12/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_PrintTupleCountTable.cpp.o -MF libblasr_impl.a.p/extrautils_PrintTupleCountTable.cpp.o.d -o libblasr_impl.a.p/extrautils_PrintTupleCountTable.cpp.o -c ../extrautils/PrintTupleCountTable.cpp [13/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_SamToM4.cpp.o -MF libblasr_impl.a.p/utils_SamToM4.cpp.o.d -o libblasr_impl.a.p/utils_SamToM4.cpp.o -c ../utils/SamToM4.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamToM4.cpp:21: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/powerpc64le-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/powerpc64le-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamToM4.cpp:21: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamToM4.cpp:21: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/powerpc64le-linux-gnu/include/c++/11/powerpc64le-linux-gnu/bits/c++allocator.h:33, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/allocator.h:46, from /usr/powerpc64le-linux-gnu/include/c++/11/string:41, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/locale_classes.h:40, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/ios_base.h:41, from /usr/powerpc64le-linux-gnu/include/c++/11/ios:42, from /usr/powerpc64le-linux-gnu/include/c++/11/ostream:38, from /usr/powerpc64le-linux-gnu/include/c++/11/iostream:39, from ../utils/SamToM4.cpp:19: /usr/powerpc64le-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [14/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_SamToCmpH5.cpp.o -MF libblasr_impl.a.p/utils_SamToCmpH5.cpp.o.d -o libblasr_impl.a.p/utils_SamToCmpH5.cpp.o -c ../utils/SamToCmpH5.cpp In file included from /usr/include/pbseq/alignment/datastructures/alignment/AlignmentCandidate.hpp:6, from ../utils/SamToCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/powerpc64le-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/powerpc64le-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/datastructures/alignment/AlignmentCandidate.hpp:6, from ../utils/SamToCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/AlignmentCandidate.hpp:6, from ../utils/SamToCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/powerpc64le-linux-gnu/include/c++/11/powerpc64le-linux-gnu/bits/c++allocator.h:33, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/allocator.h:46, from /usr/powerpc64le-linux-gnu/include/c++/11/string:41, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/locale_classes.h:40, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/ios_base.h:41, from /usr/powerpc64le-linux-gnu/include/c++/11/ios:42, from /usr/powerpc64le-linux-gnu/include/c++/11/ostream:38, from /usr/powerpc64le-linux-gnu/include/c++/11/iostream:39, from ../utils/SamToCmpH5.cpp:1: /usr/powerpc64le-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp:79, from ../utils/SamToCmpH5.cpp:5: /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp: In instantiation of ‘unsigned int AlignmentSetToCmpH5Adapter::StoreRefGroup(std::string, T_CmpFile&) [with T_CmpFile = HDFCmpFile >; std::string = std::__cxx11::basic_string]’: /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp:136:31: required from ‘void AlignmentSetToCmpH5Adapter::StoreAlignmentCandidate(AlignmentCandidate<>&, int, T_CmpFile&, int, bool) [with T_CmpFile = HDFCmpFile >]’ /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp:246:32: required from ‘void AlignmentSetToCmpH5Adapter::StoreAlignmentCandidateList(std::vector >&, T_CmpFile&, int, bool) [with T_CmpFile = HDFCmpFile >]’ ../utils/SamToCmpH5.cpp:199:56: required from here /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp:64:45: warning: implicitly-declared ‘RefGroupNameId& RefGroupNameId::operator=(const RefGroupNameId&)’ is deprecated [-Wdeprecated-copy] 64 | refNameToRefGroupNameandId[refName] = RefGroupNameId(refGroupName, refGroupId); In file included from ../utils/SamToCmpH5.cpp:5: /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp:28:5: note: because ‘RefGroupNameId’ has user-provided ‘RefGroupNameId::RefGroupNameId(const RefGroupNameId&)’ 28 | RefGroupNameId(const RefGroupNameId &rhs) | ^~~~~~~~~~~~~~ [15/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_SDPMatcher.cpp.o -MF libblasr_impl.a.p/utils_SDPMatcher.cpp.o.d -o libblasr_impl.a.p/utils_SDPMatcher.cpp.o -c ../utils/SDPMatcher.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SDPMatcher.cpp:8: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/powerpc64le-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/powerpc64le-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SDPMatcher.cpp:8: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SDPMatcher.cpp:8: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/powerpc64le-linux-gnu/include/c++/11/powerpc64le-linux-gnu/bits/c++allocator.h:33, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/allocator.h:46, from /usr/powerpc64le-linux-gnu/include/c++/11/string:41, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/locale_classes.h:40, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/ios_base.h:41, from /usr/powerpc64le-linux-gnu/include/c++/11/ios:42, from /usr/powerpc64le-linux-gnu/include/c++/11/ostream:38, from /usr/powerpc64le-linux-gnu/include/c++/11/iostream:39, from ../utils/SDPMatcher.cpp:3: /usr/powerpc64le-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [16/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_LoadPulses.cpp.o -MF libblasr_impl.a.p/utils_LoadPulses.cpp.o.d -o libblasr_impl.a.p/utils_LoadPulses.cpp.o -c ../utils/LoadPulses.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/datastructures/alignment/ByteAlignment.h:6, from ../utils/LoadPulses.cpp:11: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/powerpc64le-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/powerpc64le-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/datastructures/alignment/ByteAlignment.h:6, from ../utils/LoadPulses.cpp:11: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/datastructures/alignment/ByteAlignment.h:6, from ../utils/LoadPulses.cpp:11: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/powerpc64le-linux-gnu/include/c++/11/powerpc64le-linux-gnu/bits/c++allocator.h:33, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/allocator.h:46, from /usr/powerpc64le-linux-gnu/include/c++/11/unordered_map:40, from /usr/powerpc64le-linux-gnu/include/c++/11/functional:61, from /usr/powerpc64le-linux-gnu/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/powerpc64le-linux-gnu/include/c++/11/algorithm:74, from ../utils/LoadPulses.cpp:3: /usr/powerpc64le-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [17/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_PulseToFasta.cpp.o -MF libblasr_impl.a.p/utils_PulseToFasta.cpp.o.d -o libblasr_impl.a.p/utils_PulseToFasta.cpp.o -c ../utils/PulseToFasta.cpp [18/25] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_SamFilter.cpp.o -MF libblasr_impl.a.p/utils_SamFilter.cpp.o.d -o libblasr_impl.a.p/utils_SamFilter.cpp.o -c ../utils/SamFilter.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamFilter.cpp:32: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/powerpc64le-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/powerpc64le-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamFilter.cpp:32: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamFilter.cpp:32: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/powerpc64le-linux-gnu/include/c++/11/powerpc64le-linux-gnu/bits/c++allocator.h:33, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/allocator.h:46, from /usr/powerpc64le-linux-gnu/include/c++/11/string:41, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/locale_classes.h:40, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/ios_base.h:41, from /usr/powerpc64le-linux-gnu/include/c++/11/ios:42, from /usr/powerpc64le-linux-gnu/include/c++/11/ostream:38, from /usr/powerpc64le-linux-gnu/include/c++/11/iostream:39, from ../utils/SamFilter.cpp:29: /usr/powerpc64le-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [19/25] rm -f libblasr_impl.a && /usr/bin/powerpc64le-linux-gnu-ar csrDT libblasr_impl.a libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o libblasr_impl.a.p/extrautils_BwtToSuffixArray.cpp.o libblasr_impl.a.p/extrautils_SWMatcher.cpp.o libblasr_impl.a.p/extrautils_SAModify.cpp.o libblasr_impl.a.p/extrautils_ExciseRepeats.cpp.o libblasr_impl.a.p/extrautils_StoreQualityByContextFromCmpH5.cpp.o libblasr_impl.a.p/extrautils_SALS.cpp.o libblasr_impl.a.p/extrautils_SimpleShredder.cpp.o libblasr_impl.a.p/extrautils_Evolve.cpp.o libblasr_impl.a.p/extrautils_BuildSequenceDB.cpp.o libblasr_impl.a.p/extrautils_PrintTupleCountTable.cpp.o libblasr_impl.a.p/utils_SamToM4.cpp.o libblasr_impl.a.p/utils_SamToCmpH5.cpp.o libblasr_impl.a.p/utils_SDPMatcher.cpp.o libblasr_impl.a.p/utils_LoadPulses.cpp.o libblasr_impl.a.p/utils_PulseToFasta.cpp.o libblasr_impl.a.p/utils_SamFilter.cpp.o [20/25] /usr/bin/powerpc64le-linux-gnu-g++ -Iblasr.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -DCMAKE_BUILD=1 -MD -MQ blasr.p/Blasr.cpp.o -MF blasr.p/Blasr.cpp.o.d -o blasr.p/Blasr.cpp.o -c ../Blasr.cpp In file included from ../iblasr/BlasrMiscs.hpp:56, from ../iblasr/BlasrAlign.hpp:5, from ../Blasr.cpp:3: ../iblasr/BlasrMiscsImpl.hpp: In function ‘void MakeSubreadIntervals(std::vector&, std::vector&)’: ../iblasr/BlasrMiscsImpl.hpp:136:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 136 | for (auto subread : subreads) { | ^~~~~~~~ In file included from /usr/include/pbseq/pbdata/CCSSequence.hpp:5, from /usr/include/pbseq/alignment/files/CCSIterator.hpp:4, from ../iblasr/BlasrHeaders.h:57, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ In file included from ../iblasr/MappingIPC.h:5, from ../iblasr/BlasrHeaders.h:99, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: ../iblasr/MappingParameters.h: In copy constructor ‘MappingParameters::MappingParameters(const MappingParameters&)’: ../iblasr/MappingParameters.h:19:7: warning: implicitly-declared ‘constexpr AnchorParameters::AnchorParameters(const AnchorParameters&)’ is deprecated [-Wdeprecated-copy] 19 | class MappingParameters | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/anchoring/BWTSearch.hpp:7, from ../iblasr/BlasrHeaders.h:42, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/datastructures/anchoring/AnchorParameters.hpp:33:23: note: because ‘AnchorParameters’ has user-provided ‘AnchorParameters& AnchorParameters::operator=(const AnchorParameters&)’ 33 | AnchorParameters &operator=(const AnchorParameters &rhs); | ^~~~~~~~ ../Blasr.cpp: In function ‘void MapReadsNonCCS(MappingData >, FASTASequence, DNATuple>*, MappingBuffers&, SMRTSequence&, SMRTSequence&, std::vector&, MappingParameters&, const int&, ReadAlignments&, std::ofstream&)’: ../Blasr.cpp:382:49: note: synthesized method ‘MappingParameters::MappingParameters(const MappingParameters&)’ first required here 382 | MappingParameters sensitiveParams = params; | ^~~~~~ ../Blasr.cpp: In function ‘int main(int, char**)’: ../Blasr.cpp:1407:32: warning: cast between incompatible function types from ‘void (*)(MappingData >, FASTASequence, DNATuple>*)’ to ‘void* (*)(void*)’ [-Wcast-function-type] 1407 | (void *(*)(void *))MapReads, &mapdb[procIndex]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/pbseq/alignment/format/BAMPrinter.hpp:29, from ../iblasr/BlasrHeaders.h:60, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp: In instantiation of ‘void AlignmentToBamRecord(T_AlignmentCandidate&, T_Sequence&, T_Sequence&, PacBio::BAM::BamRecord&, AlignmentContext&, SupplementalQVList&, SAMOutput::Clipping, bool, bool) [with T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’: /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp:167:25: required from ‘void BAMOutput::PrintAlignment(T_AlignmentCandidate&, T_Sequence&, T_Sequence&, PacBio::BAM::IRecordWriter&, AlignmentContext&, SupplementalQVList&, SAMOutput::Clipping, bool, bool) [with T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrUtilsImpl.hpp:951:38: required from here /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp:27:45: warning: the compiler can assume that the address of ‘read’ will never be NULL [-Waddress] 27 | if (dynamic_cast(&read) == NULL) { | ^ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:11, from /usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp:4, from ../iblasr/BlasrHeaders.h:30, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/powerpc64le-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/powerpc64le-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:11, from /usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp:4, from ../iblasr/BlasrHeaders.h:30, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:11, from /usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp:4, from ../iblasr/BlasrHeaders.h:30, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/powerpc64le-linux-gnu/include/c++/11/powerpc64le-linux-gnu/bits/c++allocator.h:33, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/allocator.h:46, from /usr/powerpc64le-linux-gnu/include/c++/11/string:41, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/locale_classes.h:40, from /usr/powerpc64le-linux-gnu/include/c++/11/bits/ios_base.h:41, from /usr/powerpc64le-linux-gnu/include/c++/11/ios:42, from /usr/powerpc64le-linux-gnu/include/c++/11/ostream:38, from /usr/powerpc64le-linux-gnu/include/c++/11/iostream:39, from ../iblasr/BlasrHeaders.h:10, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/powerpc64le-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/powerpc64le-linux-gnu/include/c++/11/cassert:44, from /usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp:5, from /usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:35, from /usr/include/pbseq/alignment/algorithms/alignment/SDPAlignImpl.hpp:18, from /usr/include/pbseq/alignment/algorithms/alignment/SDPAlign.hpp:44, from /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:13, from /usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp:4, from ../iblasr/BlasrHeaders.h:30, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp: In instantiation of ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, blasr::Alignment&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, AlignmentType, bool) [with QSequence = SMRTSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction]’: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:526:23: required from ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, T_BufferCache&, blasr::Alignment&, AlignmentType, bool) [with QSequence = SMRTSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction; T_BufferCache = MappingBuffers]’ /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:512:23: required from ‘int GuidedAlign(QSequence&, TSequence&, T_ScoreFn&, int, int, int, float, T_BufferCache&, blasr::Alignment&, AlignmentType, bool, int) [with QSequence = SMRTSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction; T_BufferCache = MappingBuffers]’ ../iblasr/BlasrAlignImpl.hpp:1449:20: required from here /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:97:24: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 97 | assert(matrixNElem >= 0); | ~~~~~~~~~~~~^~~~ In file included from /usr/powerpc64le-linux-gnu/include/c++/11/cassert:44, from /usr/include/pbseq/alignment/statistics/StatUtils.hpp:5, from /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:12, from /usr/include/pbseq/alignment/algorithms/alignment/AffineKBandAlign.hpp:9, from ../iblasr/BlasrHeaders.h:31, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp: In instantiation of ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, AlignmentType, T_ScoreFn&, bool) [with T_QuerySequence = SMRTSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = IDSScoreFunction; DNALength = unsigned int]’: /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:30:22: required from ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, T_ScoreFn&, AlignmentType, bool) [with T_QuerySequence = SMRTSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = IDSScoreFunction; DNALength = unsigned int]’ ../iblasr/BlasrUtilsImpl.hpp:639:19: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:151:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 151 | assert(t - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:152:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 152 | assert(q - 1 >= 0); | ~~~~~~^~~~ In file included from /usr/powerpc64le-linux-gnu/include/c++/11/cassert:44, from /usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp:5, from /usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:35, from /usr/include/pbseq/alignment/algorithms/alignment/SDPAlignImpl.hpp:18, from /usr/include/pbseq/alignment/algorithms/alignment/SDPAlign.hpp:44, from /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:13, from /usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp:4, from ../iblasr/BlasrHeaders.h:30, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp: In instantiation of ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, blasr::Alignment&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, AlignmentType, bool) [with QSequence = FASTQSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction]’: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:526:23: required from ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, T_BufferCache&, blasr::Alignment&, AlignmentType, bool) [with QSequence = FASTQSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction; T_BufferCache = MappingBuffers]’ ../iblasr/BlasrUtilsImpl.hpp:689:32: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:97:24: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 97 | assert(matrixNElem >= 0); | ~~~~~~~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp: In instantiation of ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, blasr::Alignment&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, AlignmentType, bool) [with QSequence = FASTQSequence; TSequence = DNASequence; T_ScoreFn = DistanceMatrixScoreFunction]’: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:526:23: required from ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, T_BufferCache&, blasr::Alignment&, AlignmentType, bool) [with QSequence = FASTQSequence; TSequence = DNASequence; T_ScoreFn = DistanceMatrixScoreFunction; T_BufferCache = MappingBuffers]’ ../iblasr/BlasrUtilsImpl.hpp:698:32: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:97:24: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] In file included from /usr/powerpc64le-linux-gnu/include/c++/11/cassert:44, from /usr/include/pbseq/alignment/statistics/StatUtils.hpp:5, from /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:12, from /usr/include/pbseq/alignment/algorithms/alignment/AffineKBandAlign.hpp:9, from ../iblasr/BlasrHeaders.h:31, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/algorithms/alignment/OneGapAlignment.hpp: In instantiation of ‘int OneGapAlign(T_QuerySequence&, T_RefSequence&, T_ScoreFunction&, T_BufferList&, blasr::Alignment&) [with T_QuerySequence = FASTQSequence; T_RefSequence = DNASequence; T_ScoreFunction = DistanceMatrixScoreFunction; T_BufferList = MappingBuffers]’: ../iblasr/BlasrAlignImpl.hpp:918:40: required from ‘void AlignIntervals(T_TargetSequence&, T_QuerySequence&, T_QuerySequence&, WeightedIntervalSet&, int (*)[5], int, int, int, int, SequenceIndexDatabase&, std::vector*>&, MappingParameters&, MappingBuffers&, int) [with T_TargetSequence = FASTASequence; T_QuerySequence = SMRTSequence; TDBSequence = FASTQSequence]’ ../iblasr/BlasrAlignImpl.hpp:280:23: required from ‘void MapRead(T_Sequence&, T_Sequence&, T_RefSequence&, T_SuffixArray&, BWT&, SeqBoundaryFtr&, T_TupleCountTable&, SequenceIndexDatabase&, MappingParameters&, MappingMetrics&, std::vector*>&, MappingBuffers&, MappingIPC*, MappingSemaphores&) [with T_Sequence = SMRTSequence; T_RefSequence = FASTASequence; T_SuffixArray = SuffixArray >; T_TupleCountTable = TupleCountTable; BWT = Bwt; MappingIPC = MappingData >, FASTASequence, DNATuple>]’ ../Blasr.cpp:347:16: required from here /usr/include/pbseq/alignment/algorithms/alignment/OneGapAlignment.hpp:337:40: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 337 | assert(distanceBetweenLeftAndRight >= 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp: In instantiation of ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, AlignmentType, T_ScoreFn&, bool) [with T_QuerySequence = FASTQSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = IDSScoreFunction; DNALength = unsigned int]’: /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:30:22: required from ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, T_ScoreFn&, AlignmentType, bool) [with T_QuerySequence = FASTQSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = IDSScoreFunction; DNALength = unsigned int]’ ../iblasr/BlasrAlignImpl.hpp:1301:38: required from ‘void PairwiseLocalAlign(T_Sequence&, T_RefSequence&, int, MappingParameters&, T_AlignmentCandidate&, MappingBuffers&, AlignmentType) [with T_RefSequence = DNASequence; T_Sequence = FASTQSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrUtilsImpl.hpp:873:27: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:151:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 151 | assert(t - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:152:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 152 | assert(q - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp: In instantiation of ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, AlignmentType, T_ScoreFn&, bool) [with T_QuerySequence = FASTQSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = QualityValueScoreFunction; DNALength = unsigned int]’: /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:30:22: required from ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, T_ScoreFn&, AlignmentType, bool) [with T_QuerySequence = FASTQSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = QualityValueScoreFunction; DNALength = unsigned int]’ ../iblasr/BlasrAlignImpl.hpp:1310:38: required from ‘void PairwiseLocalAlign(T_Sequence&, T_RefSequence&, int, MappingParameters&, T_AlignmentCandidate&, MappingBuffers&, AlignmentType) [with T_RefSequence = DNASequence; T_Sequence = FASTQSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrUtilsImpl.hpp:873:27: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:151:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 151 | assert(t - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:152:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 152 | assert(q - 1 >= 0); | ~~~~~~^~~~ In file included from /usr/include/pbseq/alignment/format/BAMPrinter.hpp:29, from ../iblasr/BlasrHeaders.h:60, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp: In function ‘void AlignmentToBamRecord(T_AlignmentCandidate&, T_Sequence&, T_Sequence&, PacBio::BAM::BamRecord&, AlignmentContext&, SupplementalQVList&, SAMOutput::Clipping, bool, bool) [with T_Sequence = SMRTSequence]’: /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp:27:5: warning: ‘nonnull’ argument ‘read’ compared to NULL [-Wnonnull-compare] 27 | if (dynamic_cast(&read) == NULL) { | ^~ [21/25] /usr/bin/powerpc64le-linux-gnu-g++ -o blasr blasr.p/Blasr.cpp.o -I/usr/include/pbseq -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu/hdf5/serial -Wl,--as-needed -Wl,--no-undefined -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -Wl,--start-group -lhdf5_cpp -lhdf5 -Wl,-z,relro libblasr_impl.a -pthread -lpbbam /usr/lib/powerpc64le-linux-gnu/libblasr.so /usr/lib/powerpc64le-linux-gnu/libpbbam.so /usr/lib/powerpc64le-linux-gnu/libpbcopper.so -lpbcopper /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/libhts.so -lpbbam -lpbcopper -Wl,--end-group /usr/lib/gcc-cross/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/bin/ld: warning: libpbcopper.so.1.9.3, needed by /usr/lib/powerpc64le-linux-gnu/libpbbam.so, may conflict with libpbcopper.so.2.0.0 [22/25] /usr/bin/powerpc64le-linux-gnu-g++ -Isawriter.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -DCMAKE_BUILD=1 -MD -MQ sawriter.p/utils_SAWriter.cpp.o -MF sawriter.p/utils_SAWriter.cpp.o.d -o sawriter.p/utils_SAWriter.cpp.o -c ../utils/SAWriter.cpp [23/25] /usr/bin/powerpc64le-linux-gnu-g++ -o sawriter sawriter.p/utils_SAWriter.cpp.o -I/usr/include/pbseq -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu/hdf5/serial -Wl,--as-needed -Wl,--no-undefined -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -Wl,--start-group -lhdf5_cpp -lhdf5 -Wl,-z,relro libblasr_impl.a -pthread -lpbbam /usr/lib/powerpc64le-linux-gnu/libblasr.so /usr/lib/powerpc64le-linux-gnu/libpbbam.so /usr/lib/powerpc64le-linux-gnu/libpbcopper.so -lpbcopper /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/libhts.so -lpbbam -lpbcopper -Wl,--end-group [24/25] /usr/bin/powerpc64le-linux-gnu-g++ -ItoAfg.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -isystem /usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -DCMAKE_BUILD=1 -MD -MQ toAfg.p/utils_ToAfg.cpp.o -MF toAfg.p/utils_ToAfg.cpp.o.d -o toAfg.p/utils_ToAfg.cpp.o -c ../utils/ToAfg.cpp [25/25] /usr/bin/powerpc64le-linux-gnu-g++ -o toAfg toAfg.p/utils_ToAfg.cpp.o -I/usr/include/pbseq -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu/hdf5/serial -Wl,--as-needed -Wl,--no-undefined -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -Wl,--start-group -lhdf5_cpp -lhdf5 -Wl,-z,relro libblasr_impl.a -pthread -lpbbam /usr/lib/powerpc64le-linux-gnu/libblasr.so /usr/lib/powerpc64le-linux-gnu/libpbbam.so /usr/lib/powerpc64le-linux-gnu/libpbcopper.so -lpbcopper /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/libhts.so -lpbbam -lpbcopper -Wl,--end-group dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=meson" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=meson dh_prep -a -O--buildsystem=meson dh_auto_install --destdir=debian/blasr/ -a -O--buildsystem=meson cd obj-powerpc64le-linux-gnu && DESTDIR=/<>/blasr-5.3.5\+dfsg/debian/blasr LC_ALL=C.UTF-8 ninja install [1/4] Generating BlasrGitHash.h with a custom command [1/2] Installing files. Installing blasr to /<>/debian/blasr/usr/bin Installing sawriter to /<>/debian/blasr/usr/bin dh_install -a -O--buildsystem=meson dh_installdocs -a -O--buildsystem=meson dh_installchangelogs -a -O--buildsystem=meson dh_installexamples -a -O--buildsystem=meson dh_installman -a -O--buildsystem=meson dh_installsystemduser -a -O--buildsystem=meson dh_lintian -a -O--buildsystem=meson dh_perl -a -O--buildsystem=meson dh_link -a -O--buildsystem=meson dh_strip_nondeterminism -a -O--buildsystem=meson dh_compress -a -O--buildsystem=meson dh_fixperms -a -O--buildsystem=meson dh_missing -a -O--buildsystem=meson dh_dwz -a -O--buildsystem=meson dh_strip -a -O--buildsystem=meson dh_makeshlibs -a -O--buildsystem=meson dh_shlibdeps -a -O--buildsystem=meson dh_installdeb -a -O--buildsystem=meson dh_gencontrol -a -O--buildsystem=meson dh_md5sums -a -O--buildsystem=meson dh_builddeb -a -O--buildsystem=meson dpkg-deb: building package 'blasr' in '../blasr_5.3.5+dfsg-4_ppc64el.deb'. dpkg-deb: building package 'blasr-dbgsym' in '../blasr-dbgsym_5.3.5+dfsg-4_ppc64el.deb'. dpkg-genbuildinfo --build=any -O../blasr_5.3.5+dfsg-4_ppc64el.buildinfo dpkg-genchanges --build=any -O../blasr_5.3.5+dfsg-4_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-03-10T17:29:49Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ blasr_5.3.5+dfsg-4_ppc64el.changes: ----------------------------------- Format: 1.8 Date: Thu, 10 Mar 2022 00:33:01 +0530 Source: blasr Binary: blasr blasr-dbgsym Built-For-Profiles: cross nocheck Architecture: ppc64el Version: 5.3.5+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: blasr - mapping single-molecule sequencing reads Changes: blasr (5.3.5+dfsg-4) unstable; urgency=medium . * Team Upload. * Versioned Depends on libpbseq to fix debci * Update d/lintian-overrides * Add source lintian overrides for false positives * Update Uploader's copyright year Checksums-Sha1: e02ba640c3ae5584c50f99dada71880f1e268a3c 3163184 blasr-dbgsym_5.3.5+dfsg-4_ppc64el.deb 3700cb76108a984d0f0c6ed01f12ecd7fd1bf27a 7558 blasr_5.3.5+dfsg-4_ppc64el.buildinfo ad1cf91ddcd4fee69bd515156e4a97ca5ca1665f 225444 blasr_5.3.5+dfsg-4_ppc64el.deb Checksums-Sha256: c378e7886799e3fd6d40eef5171d1eb157a315c73456eefdb9b41f30e514d9e6 3163184 blasr-dbgsym_5.3.5+dfsg-4_ppc64el.deb a72fb68d62bf38414e11a21ad2a5ceb6599bc1857734c976ffbc39066029f3d9 7558 blasr_5.3.5+dfsg-4_ppc64el.buildinfo 9ec9135a28a0cc0006473eb707a768acb448f535067123a090c0d905453f0429 225444 blasr_5.3.5+dfsg-4_ppc64el.deb Files: 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blasr-dbgsym_5.3.5+dfsg-4_ppc64el.deb 9ec9135a28a0cc0006473eb707a768acb448f535067123a090c0d905453f0429 225444 blasr_5.3.5+dfsg-4_ppc64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 10 Mar 2022 17:29:48 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4), autotools-dev (= 20220109.1), base-files (= 12.2), base-passwd (= 3.5.52), bash (= 5.1-6), binutils (= 2.38-2), binutils-common (= 2.38-2), binutils-x86-64-linux-gnu (= 2.38-2), bsdextrautils (= 2.37.3-1+b1), bsdutils (= 1:2.37.3-1+b1), build-essential (= 12.9), bzip2 (= 1.0.8-5), cmake (= 3.22.1-1+b1), cmake-data (= 3.22.1-1), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-18), dash (= 0.5.11+git20210903+057cd650a4ed-7), debconf (= 1.5.79), debhelper (= 13.6), debianutils (= 5.7-0.1), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.10), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.1), dpkg-dev (= 1.21.1), dwz (= 0.14-1), emacsen-common (= 3.0.4), file (= 1:5.41-2), findutils (= 4.9.0-2), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-18), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-18), gcc-11-base (= 11.2.0-18), gcc-12-base (= 12-20220302-1), gettext (= 0.21-4), gettext-base (= 0.21-4), googletest (= 1.11.0-3), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4), hdf5-helpers (= 1.10.7+repack-4), hostname (= 3.23), init-system-helpers (= 1.62), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libaec-dev (= 1.0.6-1), libaec0 (= 1.0.6-1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.5.2-1), libasan6 (= 11.2.0-18), libatomic1 (= 12-20220302-1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1), libbinutils (= 2.38-2), libblasr-dev (= 5.3.5+dfsg-4), libblasr5.3.5 (= 5.3.5+dfsg-4), libblkid1 (= 2.37.3-1+b1), libboost-dev (= 1.74.0.3), libboost1.74-dev (= 1.74.0-14), libbrotli1 (= 1.0.9-2+b3), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-7), libc-dev-bin (= 2.33-7), libc6 (= 2.33-7), libc6-dev (= 2.33-7), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12-20220302-1), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.27-1.1), libcrypt1 (= 1:4.4.27-1.1), libctf-nobfd0 (= 2.38-2), libctf0 (= 2.38-2), libcurl3-gnutls (= 7.82.0-1), libcurl4 (= 7.82.0-1), libcurl4-gnutls-dev (= 7.82.0-1), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.261), libdebhelper-perl (= 13.6), libdeflate-dev (= 1.10-1), libdeflate0 (= 1.10-1), libdpkg-perl (= 1.21.1), libelf1 (= 0.186-1), libexpat1 (= 2.4.7-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.2.0-18), libgcc-s1 (= 12-20220302-1), libgcrypt20 (= 1.9.4-5), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran5 (= 12-20220302-1), libglib2.0-0 (= 2.70.4-1), libgmp10 (= 2:6.2.1+dfsg-3), libgnutls30 (= 3.7.3-4+b1), libgomp1 (= 12-20220302-1), libgpg-error0 (= 1.43-3), libgssapi-krb5-2 (= 1.19.2-2), libgtest-dev (= 1.11.0-3), libhdf5-103-1 (= 1.10.7+repack-4), libhdf5-cpp-103-1 (= 1.10.7+repack-4), libhdf5-dev (= 1.10.7+repack-4), libhdf5-fortran-102 (= 1.10.7+repack-4), libhdf5-hl-100 (= 1.10.7+repack-4), libhdf5-hl-cpp-100 (= 1.10.7+repack-4), libhdf5-hl-fortran-100 (= 1.10.7+repack-4), libhogweed6 (= 3.7.3-1), libhts-dev (= 1.13+ds-2), libhts3 (= 1.13+ds-2), libhtscodecs2 (= 1.2.1-1), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.24-2), libitm1 (= 12-20220302-1), libjpeg-dev (= 1:2.1.2-1), libjpeg62-turbo (= 1:2.1.2-1), libjpeg62-turbo-dev (= 1:2.1.2-1), libjsoncpp25 (= 1.9.5-3), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), libldap-2.4-2 (= 2.4.59+dfsg-1+b1), liblsan0 (= 12-20220302-1), liblz4-1 (= 1.9.3-2), liblzma-dev (= 5.2.5-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmount1 (= 2.37.3-1+b1), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.3-2), libncursesw6 (= 6.3-2), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.0-6), libpam-modules (= 1.4.0-11), libpam-modules-bin (= 1.4.0-11), libpam-runtime (= 1.4.0-11), libpam0g (= 1.4.0-11), libpbbam-dev (= 1.7.0+dfsg-2), libpbbam1.7.0 (= 1.7.0+dfsg-2), libpbcopper-dev (= 2.0.0+dfsg-2), libpbcopper1.9.3 (= 1.9.3+dfsg-2), libpbcopper2.0.0 (= 2.0.0+dfsg-2), libpbdata-dev (= 5.3.5+dfsg-4), libpbihdf-dev (= 5.3.5+dfsg-4), libpbseq-dev (= 5.3.5+dfsg-4), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13), libperl5.34 (= 5.34.0-3), libpipeline1 (= 1.5.5-1), libprocps8 (= 2:3.3.17-7+b1), libpsl5 (= 0.21.0-1.2), libpython3-stdlib (= 3.9.8-1), libpython3.9-minimal (= 3.9.10-2), libpython3.9-stdlib (= 3.9.10-2), libquadmath0 (= 12-20220302-1), libreadline8 (= 8.1.2-1), librhash0 (= 1.4.2-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-2), libsasl2-modules-db (= 2.1.28+dfsg-2), libseccomp2 (= 2.5.3-2), libselinux1 (= 3.3-1+b1), libsigsegv2 (= 2.14-1), libsmartcols1 (= 2.37.3-1+b1), libsqlite3-0 (= 3.38.0-1), libssh2-1 (= 1.10.0-3), libssl-dev (= 1.1.1m-1), libssl1.1 (= 1.1.1m-1), libstdc++-11-dev (= 11.2.0-18), libstdc++6 (= 12-20220302-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 250.3-2), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.18.0-4), libtinfo6 (= 6.3-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-18), libubsan1 (= 12-20220302-1), libuchardet0 (= 0.0.7-1), libudev1 (= 250.3-2), libunistring2 (= 1.0-1), libuuid1 (= 2.37.3-1+b1), libuv1 (= 1.43.0-1), libxml2 (= 2.9.13+dfsg-1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.16.12-1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.10.1-1), mawk (= 1.3.4.20200120-3+b1), media-types (= 6.0.0), meson (= 0.61.2-1), ncurses-base (= 6.3-2), ncurses-bin (= 6.3-2), ninja-build (= 1.10.1-1), patch (= 2.7.6-7), perl (= 5.34.0-3), perl-base (= 5.34.0-3), perl-modules-5.34 (= 5.34.0-3), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-7+b1), python3 (= 3.9.8-1), python3-distutils (= 3.9.10-1), python3-lib2to3 (= 3.9.10-1), python3-minimal (= 3.9.8-1), python3-pkg-resources (= 59.6.0-1.2), python3.9 (= 3.9.10-2), python3.9-minimal (= 3.9.10-2), readline-common (= 8.1.2-1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1), tar (= 1.34+dfsg-1), tzdata (= 2021e-1), util-linux (= 2.37.3-1+b1), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1646852581" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ blasr-dbgsym_5.3.5+dfsg-4_ppc64el.deb ------------------------------------- new Debian package, version 2.0. size 3163184 bytes: control archive=648 bytes. 416 bytes, 12 lines control 299 bytes, 3 lines md5sums Package: blasr-dbgsym Source: blasr Version: 5.3.5+dfsg-4 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 3238 Depends: blasr (= 5.3.5+dfsg-4) Section: debug Priority: optional Description: debug symbols for blasr Build-Ids: b0393621c24edf0b001ed20813ec136f9ca2c73a f8964f08bd13fb9a0abd84f03f54b759d8b35937 drwxr-xr-x root/root 0 2022-03-09 19:03 ./ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/lib/ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/lib/debug/.build-id/b0/ -rw-r--r-- root/root 149488 2022-03-09 19:03 ./usr/lib/debug/.build-id/b0/393621c24edf0b001ed20813ec136f9ca2c73a.debug drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/lib/debug/.build-id/f8/ -rw-r--r-- root/root 3122128 2022-03-09 19:03 ./usr/lib/debug/.build-id/f8/964f08bd13fb9a0abd84f03f54b759d8b35937.debug drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/ -rw-r--r-- root/root 30544 2022-03-09 19:03 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/blasr.debug drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/share/ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-03-09 19:03 ./usr/share/doc/blasr-dbgsym -> blasr blasr_5.3.5+dfsg-4_ppc64el.deb ------------------------------ new Debian package, version 2.0. size 225444 bytes: control archive=1196 bytes. 808 bytes, 14 lines control 982 bytes, 15 lines md5sums Package: blasr Version: 5.3.5+dfsg-4 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 744 Depends: libblasr5.3.5 (>= 5.3.5+dfsg), libc6 (>= 2.32), libgcc-s1 (>= 3.0), libhdf5-cpp-103-1 (>= 1.10.5), libpbbam1.7.0 (>= 1.7.0+dfsg), libpbcopper2.0.0 (>= 2.0.0+dfsg), libstdc++6 (>= 11), libpbseq (>= 5.3.5+dfsg-4~) Section: science Priority: optional Homepage: https://github.com/PacificBiosciences/blasr Description: mapping single-molecule sequencing reads Basic local alignment with successive refinement (BLASR) is a method for mapping single-molecule sequencing reads against a reference genome. Such reads are thousands of bases long, with divergence between them and the genome being dominated by insertion and deletion error. drwxr-xr-x root/root 0 2022-03-09 19:03 ./ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/bin/ -rwxr-xr-x root/root 661168 2022-03-09 19:03 ./usr/bin/blasr -rwxr-xr-x root/root 68496 2022-03-09 19:03 ./usr/bin/sawriter drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/share/ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/share/doc/blasr/ -rw-r--r-- root/root 373 2022-03-09 18:44 ./usr/share/doc/blasr/NEWS.Debian.gz -rw-r--r-- root/root 1291 2021-02-18 10:03 ./usr/share/doc/blasr/README.md -rw-r--r-- root/root 208 2022-03-09 18:44 ./usr/share/doc/blasr/README.source -rw-r--r-- root/root 542 2022-03-09 18:44 ./usr/share/doc/blasr/README.test -rw-r--r-- root/root 41 2022-03-09 18:44 ./usr/share/doc/blasr/TODO.Debian -rw-r--r-- root/root 2359 2022-03-09 19:03 ./usr/share/doc/blasr/changelog.Debian.gz -rw-r--r-- root/root 2193 2022-03-09 19:02 ./usr/share/doc/blasr/copyright drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/share/doc/blasr/examples/ -rw-r--r-- root/root 65 2022-03-09 18:44 ./usr/share/doc/blasr/examples/query.fasta -rw-r--r-- root/root 72 2022-03-09 18:44 ./usr/share/doc/blasr/examples/ref.fa -rw-r--r-- root/root 897 2022-03-09 18:44 ./usr/share/doc/blasr/run-unit-test drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 163 2022-03-09 19:02 ./usr/share/lintian/overrides/blasr drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/share/man/ drwxr-xr-x root/root 0 2022-03-09 19:03 ./usr/share/man/man1/ -rw-r--r-- root/root 1369 2022-03-09 19:03 ./usr/share/man/man1/blasr.1.gz -rw-r--r-- root/root 872 2022-03-09 19:03 ./usr/share/man/man1/sawriter.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [624 B] Get:5 copy:/<>/apt_archive ./ Packages [716 B] Fetched 2303 B in 0s (84.3 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:ppc64el t1utils unzip 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 6757 kB of archives. After this operation, 21.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.5-1 [51.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-3 [548 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-3 [927 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40+b1 [72.1 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b4 [11.3 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b3 [16.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b4 [25.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.31-1 [24.2 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b4 [45.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b8 [37.7 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b2 [15.5 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.28-1 [17.3 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b2 [25.7 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libconst-fast-perl all 0.014-1.1 [8552 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.27-1+b1 [129 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2+b1 [40.5 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.01-2+b1 [35.7 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-1+b6 [104 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b3 [26.1 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b4 [28.0 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-2 [7448 B] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-2 [8992 B] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-3 [60.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b2 [173 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b4 [12.1 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b2 [13.9 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b8 [17.5 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.009-1+b1 [12.2 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.634-1+b1 [46.9 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.023+ds-1 [99.7 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.023+ds-1 [104 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.22-1 [51.2 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.27-1 [28.5 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b3 [27.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b9 [8800 B] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1+b1 [13.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-1+b1 [197 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b4 [75.8 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b3 [20.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.10-1 [91.0 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1+b1 [35.9 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.23-1 [90.0 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.114.0 [1382 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6757 kB in 0s (23.3 MB/s) Selecting previously unselected package diffstat. (Reading database ... 42645 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.27-3_amd64.deb ... Unpacking gpgconf (2.2.27-3) ... Selecting previously unselected package gpg. Preparing to unpack .../03-gpg_2.2.27-3_amd64.deb ... Unpacking gpg (2.2.27-3) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../04-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../05-libapt-pkg-perl_0.1.40+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.40+b1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../06-libb-hooks-op-check-perl_0.22-1+b4_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b4) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../07-libdynaloader-functions-perl_0.003-1.1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1.1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../08-libdevel-callchecker-perl_0.008-1+b3_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b3) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../09-libparams-classify-perl_0.015-1+b4_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b4) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../10-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../11-libtry-tiny-perl_0.31-1_all.deb ... Unpacking libtry-tiny-perl (0.31-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../12-libmodule-implementation-perl_0.09-1.1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1.1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../13-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../14-libvariable-magic-perl_0.62-1+b4_amd64.deb ... Unpacking libvariable-magic-perl (0.62-1+b4) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../15-libb-hooks-endofscope-perl_0.26-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.26-1) ... Selecting previously unselected package libcapture-tiny-perl. 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Setting up libtry-tiny-perl (0.31-1) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b4) ... Setting up libassuan0:amd64 (2.5.5-1) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl:amd64 (4.023+ds-1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-1+b6) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.22-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up libperlio-utf8-strict-perl (0.009-1+b1) ... Setting up libio-prompt-tiny-perl (0.003-1) ... Setting up lzip (1.23-1) ... update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b4) ... Setting up libb-hooks-op-check-perl (0.22-1+b4) ... Setting up liblist-moreutils-xs-perl (0.430-2+b1) ... Setting up libparams-util-perl (1.102-1+b2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:amd64 (3.5.9-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b2) ... Setting up libsyntax-keyword-try-perl (0.27-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.634-1+b1) ... Setting up libpath-tiny-perl (0.122-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.27-3) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b8) ... Setting up libsort-versions-perl (1.62-1) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b3) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b9) ... Setting up libperlio-gzip-perl (0.19-1+b8) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.023+ds-1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.10-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.27-3) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.04-1+b4) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b4) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.114.0) ... Setting up sbuild-build-depends-lintian-dummy:ppc64el (0.invalid.0) ... Processing triggers for man-db (2.10.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.33-7) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 80432 Build-Time: 165 Distribution: unstable Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 38 Job: blasr_5.3.5+dfsg-4 Lintian: pass Machine Architecture: amd64 Package: blasr Package-Time: 215 Source-Version: 5.3.5+dfsg-4 Space: 80432 Status: successful Version: 5.3.5+dfsg-4 -------------------------------------------------------------------------------- Finished at 2022-03-10T17:29:49Z Build needed 00:03:35, 80432k disk space