sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | bppsuite 2.4.1-1 (armhf) Tue, 03 Dec 2019 19:58:41 +0000 | +==============================================================================+ Package: bppsuite Version: 2.4.1-1 Source Version: 2.4.1-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-b90687a6-ca88-406c-b723-d2bfa192263c' with '<>' I: NOTICE: Log filtering will replace 'build/bppsuite-YDcm3e/resolver-i7NngO' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-03-0817.40.pdiff [5664 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-03-1415.56.pdiff [17.3 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-03-1415.56.pdiff [17.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-03-0817.40.pdiff [26.6 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-03-1415.56.pdiff [26.7 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armhf Packages [7968 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-03-1415.56.pdiff [26.7 kB] Fetched 8242 kB in 2s (4272 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'bppsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bppsuite.git Please use: git clone https://salsa.debian.org/med-team/bppsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 227 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main bppsuite 2.4.1-1 (dsc) [2139 B] Get:2 http://debian.oregonstate.edu/debian unstable/main bppsuite 2.4.1-1 (tar) [214 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main bppsuite 2.4.1-1 (diff) [9976 B] Fetched 227 kB in 0s (3082 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/bppsuite-YDcm3e/bppsuite-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/bppsuite-YDcm3e' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), cmake, texinfo, libbpp-phyl-dev (>= 2.4.0), libbpp-popgen-dev (>= 2.4.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper (>= 11~), cmake, texinfo, libbpp-phyl-dev (>= 2.4.0), libbpp-popgen-dev (>= 2.4.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [433 B] Get:5 copy:/<>/apt_archive ./ Packages [525 B] Fetched 1915 B in 0s (93.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils cmake cmake-data cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbpp-core-dev:armhf libbpp-core4:armhf libbpp-phyl-dev:armhf libbpp-phyl12:armhf libbpp-popgen-dev:armhf libbpp-popgen8:armhf libbpp-seq-dev:armhf libbpp-seq12:armhf libbrotli1 libbsd0 libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc1:armhf libgcc1-armhf-cross libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2 libicu63 libio-string-perl libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtext-unidecode-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf procps sensible-utils tex-common texinfo ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation cmake-doc ninja-build gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf krb5-doc krb5-user libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended Recommended packages: curl | wget | lynx libidn2-0:armhf ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils cmake cmake-data cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbpp-core-dev:armhf libbpp-core4:armhf libbpp-phyl-dev:armhf libbpp-phyl12:armhf libbpp-popgen-dev:armhf libbpp-popgen8:armhf libbpp-seq-dev:armhf libbpp-seq12:armhf libbrotli1 libbsd0 libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc1:armhf libgcc1-armhf-cross libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2 libicu63 libio-string-perl libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtext-unidecode-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:armhf sensible-utils tex-common texinfo ucf 0 upgraded, 121 newly installed, 0 to remove and 0 not upgraded. Need to get 81.5 MB of archives. After this operation, 349 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-1 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 tex-common all 6.13 [53.2 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.2.1-21 [194 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps7 amd64 2:3.3.15-2+b1 [62.0 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.15-2+b1 [259 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-6 [253 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-6 [119 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-6 [67.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.33.1-5 [2722 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.15.4-1 [1580 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.4.0-1+b1 [335 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.7-5+b1 [267 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1 [69.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1 [106 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.48+dfsg-1+b2 [225 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.40.0-1 [85.0 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b1 [60.8 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.67.0-2 [321 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3+b1 [77.9 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.33.1-2 [125 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.15.4-1 [3568 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf-base amd64 9.2.1-21cross1 [194 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabihf amd64 9.2.1-21cross1 [6813 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [16.7 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-21cross1 [190 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.29-1cross7 [1122 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:9.2.1-21cross1 [37.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 9.2.1-21cross1 [73.2 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 9.2.1-21cross1 [6624 B] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 9.2.1-21cross1 [362 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 9.2.1-21cross1 [392 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 9.2.1-21cross1 [112 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armhf-cross all 9.2.1-21cross1 [664 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf amd64 9.2.1-21cross1 [7159 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1476 B] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.2.9-2cross7 [1312 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.29-1cross7 [2122 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armhf-cross all 9.2.1-21cross1 [1720 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabihf amd64 9.2.1-21cross1 [7390 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1184 B] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.8 [6644 B] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.7.1 [173 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-1 [14.6 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-4 [149 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.3-2 [1320 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.7.1 [997 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armhf libgcc1 armhf 1:9.2.1-21 [37.3 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.29-3 [2340 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.2.1-21 [369 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 9.2.1-21 [6864 B] Get:105 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 9.2.1-21 [431 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armhf libbpp-core4 armhf 2.4.1-4 [510 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armhf libbpp-core-dev armhf 2.4.1-4 [956 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armhf libbpp-seq12 armhf 2.4.1-4 [443 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armhf libbpp-phyl12 armhf 2.4.1-3 [1448 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armhf libbpp-seq-dev armhf 2.4.1-4 [765 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armhf libbpp-phyl-dev armhf 2.4.1-3 [3256 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armhf libbpp-popgen8 armhf 2.4.1-2 [194 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armhf libbpp-popgen-dev armhf 2.4.1-2 [284 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.3.9-3 [986 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.29-3 [2141 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 9.2.1-21 [75.2 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 9.2.1-21 [113 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.2.1-21 [664 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.2.1-21 [1720 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-unidecode-perl all 1.30-1 [103 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 texinfo amd64 6.7.0.dfsg.2-5 [1761 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 81.5 MB in 2s (40.8 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14997 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.0-1_amd64.deb ... Unpacking man-db (2.9.0-1) ... 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Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2+b1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.15.4-1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up binutils-arm-linux-gnueabihf (2.33.1-5) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-8) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libjsoncpp1:amd64 (1.7.4-3+b1) ... Setting up gcc-9-base:armhf (9.2.1-21) ... Setting up libgomp1-armhf-cross (9.2.1-21cross1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libtool (2.4.6-11) ... Setting up cpp-9-arm-linux-gnueabihf (9.2.1-21cross1) ... Setting up libarchive13:amd64 (3.4.0-1+b1) ... Setting up libc6-dev-armhf-cross (2.29-1cross7) ... Setting up libldap-2.4-2:amd64 (2.4.48+dfsg-1+b2) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-armhf-cross (9.2.1-21cross1) ... Setting up libgcc1-armhf-cross (1:9.2.1-21cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-4) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:amd64 (7.67.0-2) ... Setting up cpp-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up man-db (2.9.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armhf-cross (9.2.1-21cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up tex-common (6.13) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libstdc++6-armhf-cross (9.2.1-21cross1) ... Setting up libubsan1-armhf-cross (9.2.1-21cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-9-dev-armhf-cross (9.2.1-21cross1) ... Setting up cmake (3.15.4-1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up texinfo (6.7.0.dfsg.2-5) ... Setting up gcc-9-arm-linux-gnueabihf (9.2.1-21cross1) ... Setting up libstdc++-9-dev-armhf-cross (9.2.1-21cross1) ... Setting up gcc-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-9-arm-linux-gnueabihf (9.2.1-21cross1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armhf (12.8) ... Setting up libgcc1:armhf (1:9.2.1-21) ... Setting up dh-autoreconf (19) ... Setting up libc6:armhf (2.29-3) ... Setting up libc6-dev:armhf (2.29-3) ... Setting up libstdc++6:armhf (9.2.1-21) ... Setting up debhelper (12.7.1) ... Setting up libgomp1:armhf (9.2.1-21) ... Setting up libasan5:armhf (9.2.1-21) ... Setting up libbpp-core4:armhf (2.4.1-4) ... Setting up libatomic1:armhf (9.2.1-21) ... Setting up libubsan1:armhf (9.2.1-21) ... Setting up libbpp-seq12:armhf (2.4.1-4) ... Setting up libbpp-phyl12:armhf (2.4.1-3) ... Setting up libbpp-popgen8:armhf (2.4.1-2) ... Setting up libgcc-9-dev:armhf (9.2.1-21) ... Setting up libbpp-core-dev:armhf (2.4.1-4) ... Setting up libbpp-seq-dev:armhf (2.4.1-4) ... Setting up libstdc++-9-dev:armhf (9.2.1-21) ... Setting up libbpp-popgen-dev:armhf (2.4.1-2) ... Setting up libbpp-phyl-dev:armhf (2.4.1-3) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.29-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33.1-5 dpkg-dev_1.19.7 g++-8_8.3.0-26 g++-9_9.2.1-21 gcc-8_8.3.0-26 gcc-9_9.2.1-21 libc6-dev_2.29-3 libstdc++-8-dev_8.3.0-26 libstdc++-9-dev_9.2.1-21 libstdc++-9-dev-armhf-cross_9.2.1-21cross1 libstdc++6_9.2.1-21 libstdc++6-armhf-cross_9.2.1-21cross1 linux-libc-dev_5.3.9-3 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-5 binutils_2.33.1-5 binutils-arm-linux-gnueabihf_2.33.1-5 binutils-common_2.33.1-5 binutils-x86-64-linux-gnu_2.33.1-5 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cmake_3.15.4-1 cmake-data_3.15.4-1 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-26 cpp-9_9.2.1-21 cpp-9-arm-linux-gnueabihf_9.2.1-21cross1 cpp-arm-linux-gnueabihf_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armhf_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-4 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-26 g++-9_9.2.1-21 g++-9-arm-linux-gnueabihf_9.2.1-21cross1 g++-arm-linux-gnueabihf_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-26 gcc-8-base_8.3.0-26 gcc-9_9.2.1-21 gcc-9-arm-linux-gnueabihf_9.2.1-21cross1 gcc-9-arm-linux-gnueabihf-base_9.2.1-21cross1 gcc-9-base_9.2.1-21 gcc-9-cross-base_9.2.1-21cross1 gcc-arm-linux-gnueabihf_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libarchive13_3.4.0-1+b1 libasan5_9.2.1-21 libasan5-armhf-cross_9.2.1-21cross1 libatomic1_9.2.1-21 libatomic1-armhf-cross_9.2.1-21cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-5 libblkid1_2.34-0.1 libbpp-core-dev_2.4.1-4 libbpp-core4_2.4.1-4 libbpp-phyl-dev_2.4.1-3 libbpp-phyl12_2.4.1-3 libbpp-popgen-dev_2.4.1-2 libbpp-popgen8_2.4.1-2 libbpp-seq-dev_2.4.1-4 libbpp-seq12_2.4.1-4 libbrotli1_1.0.7-5+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-3 libc-dev-bin_2.29-3 libc6_2.29-3 libc6-armhf-cross_2.29-1cross7 libc6-dev_2.29-3 libc6-dev-armhf-cross_2.29-1cross7 libcap-ng0_0.7.9-2.1+b1 libcc1-0_9.2.1-21 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcurl4_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-26 libgcc-9-dev_9.2.1-21 libgcc-9-dev-armhf-cross_9.2.1-21cross1 libgcc1_1:9.2.1-21 libgcc1-armhf-cross_1:9.2.1-21cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-5 libgomp1_9.2.1-21 libgomp1-armhf-cross_9.2.1-21cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22-2 libitm1_9.2.1-21 libjsoncpp1_1.7.4-3+b1 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-4 liblsan0_9.2.1-21 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-26 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-3 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.1-2 libprocps7_2:3.3.15-2+b1 libpsl5_0.20.2-2 libquadmath0_9.2.1-21 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.2-2 libselinux1_2.9-3+b1 libsemanage-common_2.9-3 libsemanage1_2.9-3+b1 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-8-dev_8.3.0-26 libstdc++-9-dev_9.2.1-21 libstdc++-9-dev-armhf-cross_9.2.1-21cross1 libstdc++6_9.2.1-21 libstdc++6-armhf-cross_9.2.1-21cross1 libsub-override-perl_0.09-2 libsystemd0_244-3 libtasn1-6_4.15.0-2 libtext-unidecode-perl_1.30-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtsan0_9.2.1-21 libubsan1_9.2.1-21 libubsan1-armhf-cross_9.2.1-21cross1 libuchardet0_0.0.6-3 libudev1_244-3 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.33.1-2 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-8 libyaml-perl_1.29-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.9-3 linux-libc-dev-armhf-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 procps_2:3.3.15-2+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6+b1 tex-common_6.13 texinfo_6.7.0.dfsg.2-5 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bppsuite Binary: bppsuite, bppsuite-examples Architecture: any all Version: 2.4.1-1 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.2.0 Vcs-Browser: https://salsa.debian.org/med-team/bppsuite Vcs-Git: https://salsa.debian.org/med-team/bppsuite.git Build-Depends: debhelper (>= 11~), cmake, texinfo, libbpp-phyl-dev (>= 2.4.0), libbpp-popgen-dev (>= 2.4.0) Package-List: bppsuite deb science optional arch=any bppsuite-examples deb science optional arch=all Checksums-Sha1: 7ca13e39f3db596709d5eac1abee2f18c5147966 214404 bppsuite_2.4.1.orig.tar.gz bc9be65b02a5f54187c493b133f93b5f61462652 9976 bppsuite_2.4.1-1.debian.tar.xz Checksums-Sha256: 0485adcc17e37439069d27e4fac144e5ae38036ba21f31e6d21f070ce4ea5199 214404 bppsuite_2.4.1.orig.tar.gz 4bc9d0e666ee63aec13f27a723a8f9e34f91f7548607a2d2b6d1487482400665 9976 bppsuite_2.4.1-1.debian.tar.xz Files: d254ffd9e121b408aed36f49e62920d1 214404 bppsuite_2.4.1.orig.tar.gz 902c3e167e29d2591c7844b88cf72180 9976 bppsuite_2.4.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlt+qrIOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtFsdw/7BO3NpXRN10qYgFuuYIK0f+0GpVfpk7qYtBF+ 5M/MXHNoP4je+cvZ0Lzz9t+UcWXncpTOowcBpR+vfQ+jptagJter6ndfM0czr+HD cxZXAgD258T9YToZKBBUEiiMbKRkG3egPwBq55tKx5s7oRdedB6JqLWdhcNiY050 DwjlThjecKhC3iVJRE+xAky8Co+OqQ47zdZyryoWNCwSL0nBt+iIQgNQ2rhag6ew +4QtZTYW/CpQTu7q61DnbXY5t3MFNfGZIdqjWfcR7hNcmVSZuSxWgQ8UJx4Zych+ /RU9ogRRCVbODiEBZthZgs85MmJuCkhXXs760ubDhC3eJlMLQXXi/zR2ZgSO25jQ aowfC4dZdsU1ePb/YithTgH2m4MamCflW65wDrkLeXnekdEVGLAcgEmgaQDOO67G iu0oSMUZKpv6UGGf41mqxfH+zsB8O8T5OEofv9Kks8O1c+gfhADQsBkbZNeg8fHb MJFSaWBFIHSzfTJche8AqIq1hUuNNFTrdf4FuyPRSNwA2lBYw/tbrikse+THy/ua qm84IOWG/UPIv0NYEXaJvaB0vC1++vEdJM07hrBsHHVD4ll3p4IS194XH1zeUv5G 0FKLOkhMFJ7V5bkY3Ta30FiUAJiJL3xrrOtxnA09zad9rldTTKC8MADdfNZ4niqa 3UleXEY= =tXCz -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Aug 23 12:38:10 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bppsuite_2.4.1-1.dsc dpkg-source: info: extracting bppsuite in /<> dpkg-source: info: unpacking bppsuite_2.4.1.orig.tar.gz dpkg-source: info: unpacking bppsuite_2.4.1-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-b90687a6-ca88-406c-b723-d2bfa192263c SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Julien Dutheil dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DCMAKE_BUILD_TYPE=RelWithDebInfo cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=armv7l -DCMAKE_C_COMPILER=arm-linux-gnueabihf-gcc -DCMAKE_CXX_COMPILER=arm-linux-gnueabihf-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabihf-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabihf-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/arm-linux-gnueabihf-qmake -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_BUILD_TYPE=RelWithDebInfo .. -- The CXX compiler identification is GNU 9.2.1 -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabihf-g++ -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabihf-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- bpp-popgen 8.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-popgen.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 -- includes: /usr/include -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_COMPILER CMAKE_EXPORT_NO_PACKAGE_REGISTRY PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-arm-linux-gnueabihf make[1]: Leaving directory '/<>' dh_auto_build -a cd obj-arm-linux-gnueabihf && make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake --color= Scanning dependencies of target bppreroot make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 2%] Building CXX object bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -c /<>/bppSuite/bppReRoot.cpp [ 5%] Linking CXX executable bppreroot cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -o bppreroot /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 5%] Built target bppreroot make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake --color= Scanning dependencies of target bppancestor make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 7%] Building CXX object bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -c /<>/bppSuite/bppAncestor.cpp [ 10%] Linking CXX executable bppancestor cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppancestor.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 10%] Built target bppancestor make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake --color= Scanning dependencies of target bpppars make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 13%] Building CXX object bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppars.dir/bppPars.cpp.o -c /<>/bppSuite/bppPars.cpp [ 15%] Linking CXX executable bpppars cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 15%] Built target bpppars make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake --color= Scanning dependencies of target bpptreedraw make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 18%] Building CXX object bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -c /<>/bppSuite/bppTreeDraw.cpp [ 21%] Linking CXX executable bpptreedraw cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -o bpptreedraw /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 21%] Built target bpptreedraw make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake --color= Scanning dependencies of target bppdist make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 23%] Building CXX object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /<>/bppSuite/bppDist.cpp [ 26%] Linking CXX executable bppdist cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 26%] Built target bppdist make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= Scanning dependencies of target bppml make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 28%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppml.dir/bppML.cpp.o -c /<>/bppSuite/bppML.cpp [ 31%] Linking CXX executable bppml cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 31%] Built target bppml make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake --color= Scanning dependencies of target bppmixedlikelihoods make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 34%] Building CXX object bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -c /<>/bppSuite/bppMixedLikelihoods.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/bppSuite/bppMixedLikelihoods.cpp:50: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/bppSuite/bppMixedLikelihoods.cpp:50: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 36%] Linking CXX executable bppmixedlikelihoods cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppmixedlikelihoods.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 36%] Built target bppmixedlikelihoods make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake --color= Scanning dependencies of target bppseqgen make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 39%] Building CXX object bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -c /<>/bppSuite/bppSeqGen.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/bppSuite/bppSeqGen.cpp:50: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:650:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 650 | vector(_InputIterator __first, _InputIterator __last, | ^~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:650:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/bppSuite/bppSeqGen.cpp:50: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/bppSuite/bppSeqGen.cpp:50: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘void readTreesCoaSim(std::ifstream&, std::vector&, std::vector >&)’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /<>/bppSuite/bppSeqGen.cpp: In function ‘int main(int, char**)’: /<>/bppSuite/bppSeqGen.cpp:550:20: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 550 | tmpRates = vector(rates.begin() + previousPos, rates.begin() + currentPos); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/bppSuite/bppSeqGen.cpp:575:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 575 | tmpRates = vector(rates.begin() + previousPos + 1, rates.begin() + currentPos); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Linking CXX executable bppseqgen cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 42%] Built target bppseqgen make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake --color= Scanning dependencies of target bppseqman make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 44%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -c /<>/bppSuite/bppSeqMan.cpp [ 47%] Linking CXX executable bppseqman cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 47%] Built target bppseqman make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake --color= Scanning dependencies of target bppconsense make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 50%] Building CXX object bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppconsense.dir/bppConsense.cpp.o -c /<>/bppSuite/bppConsense.cpp [ 52%] Linking CXX executable bppconsense cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppconsense.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppconsense.dir/bppConsense.cpp.o -o bppconsense /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 52%] Built target bppconsense make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake --color= Scanning dependencies of target bpppopstats make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 55%] Building CXX object bppSuite/CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -c /<>/bppSuite/bppPopStats.cpp [ 57%] Linking CXX executable bpppopstats cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppopstats.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -o bpppopstats /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 57%] Built target bpppopstats make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= Scanning dependencies of target bppalnscore make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make 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/usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 63%] Built target bppalnscore make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/doc /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/doc /<>/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake --color= Scanning dependencies of target info make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 65%] Generating info page cd /<>/obj-arm-linux-gnueabihf/doc && /usr/bin/makeinfo --no-split -o /<>/obj-arm-linux-gnueabihf/doc/bppsuite.info /<>/doc/bppsuite.texi [ 68%] Compressing info page cd /<>/obj-arm-linux-gnueabihf/doc && /bin/gzip -c -n -9 /<>/obj-arm-linux-gnueabihf/doc/bppsuite.info > /<>/obj-arm-linux-gnueabihf/doc/bppsuite.info.gz make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 68%] Built target info make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/man /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/man /<>/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/DependInfo.cmake --color= Scanning dependencies of target man make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 71%] Compressing manpage bppalnscore.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppalnscore.1 > /<>/obj-arm-linux-gnueabihf/man/bppalnscore.1.gz [ 73%] Compressing manpage bppancestor.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppancestor.1 > /<>/obj-arm-linux-gnueabihf/man/bppancestor.1.gz [ 76%] Compressing manpage bppconsense.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppconsense.1 > /<>/obj-arm-linux-gnueabihf/man/bppconsense.1.gz [ 78%] Compressing manpage bppdist.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppdist.1 > /<>/obj-arm-linux-gnueabihf/man/bppdist.1.gz [ 81%] Compressing manpage bppmixedlikelihoods.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppmixedlikelihoods.1 > /<>/obj-arm-linux-gnueabihf/man/bppmixedlikelihoods.1.gz [ 84%] Compressing manpage bppml.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppml.1 > /<>/obj-arm-linux-gnueabihf/man/bppml.1.gz [ 86%] Compressing manpage bpppars.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bpppars.1 > /<>/obj-arm-linux-gnueabihf/man/bpppars.1.gz [ 89%] Compressing manpage bpppopstats.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bpppopstats.1 > /<>/obj-arm-linux-gnueabihf/man/bpppopstats.1.gz [ 92%] Compressing manpage bppreroot.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppreroot.1 > /<>/obj-arm-linux-gnueabihf/man/bppreroot.1.gz [ 94%] Compressing manpage bppseqgen.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppseqgen.1 > /<>/obj-arm-linux-gnueabihf/man/bppseqgen.1.gz [ 97%] Compressing manpage bppseqman.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppseqman.1 > /<>/obj-arm-linux-gnueabihf/man/bppseqman.1.gz [100%] Compressing manpage bpptreedraw.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bpptreedraw.1 > /<>/obj-arm-linux-gnueabihf/man/bpptreedraw.1.gz make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target man make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a cd obj-arm-linux-gnueabihf && make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppreroot.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 5%] Built target bppreroot make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppancestor.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 10%] Built target bppancestor make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpppars.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 15%] Built target bpppars make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpptreedraw.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 21%] Built target bpptreedraw make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppdist.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 26%] Built target bppdist make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppml.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 31%] Built target bppml make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 36%] Built target bppmixedlikelihoods make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppseqgen.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 42%] Built target bppseqgen make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppseqman.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 47%] Built target bppseqman make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppconsense.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 52%] Built target bppconsense make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpppopstats.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 57%] Built target bpppopstats make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppalnscore.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 63%] Built target bppalnscore make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/doc /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/doc /<>/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'doc/CMakeFiles/info.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 68%] Built target info make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/man /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/man /<>/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'man/CMakeFiles/man.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target man make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /<>/debian/tmp/usr/bin/bppml -- Installing: /<>/debian/tmp/usr/bin/bppseqgen -- Installing: /<>/debian/tmp/usr/bin/bppdist -- Installing: /<>/debian/tmp/usr/bin/bpppars -- Installing: /<>/debian/tmp/usr/bin/bppseqman -- Installing: /<>/debian/tmp/usr/bin/bppconsense -- Installing: /<>/debian/tmp/usr/bin/bppancestor -- Installing: /<>/debian/tmp/usr/bin/bppmixedlikelihoods -- Installing: /<>/debian/tmp/usr/bin/bppreroot -- Installing: /<>/debian/tmp/usr/bin/bpptreedraw -- Installing: /<>/debian/tmp/usr/bin/bppalnscore -- Installing: /<>/debian/tmp/usr/bin/bpppopstats -- Installing: /<>/debian/tmp/usr/share/info/bppsuite.info.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppalnscore.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppancestor.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppconsense.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppdist.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppmixedlikelihoods.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppml.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bpppars.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bpppopstats.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppreroot.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppseqgen.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppseqman.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bpptreedraw.1.gz make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installman: mv debian/bppsuite/usr/share/man/man1/bpptreedraw.1.dh-new debian/bppsuite/usr/share/man/man1/bpptreedraw.1: No such file or directory dh_installman: Aborting due to earlier error make: *** [debian/rules:8: binary-arch] Error 255 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-12-03T20:01:30Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 144516 Build-Time: 135 Distribution: unstable Fail-Stage: build Foreign Architectures: armhf Host Architecture: armhf Install-Time: 22 Job: bppsuite_2.4.1-1 Machine Architecture: amd64 Package: bppsuite Package-Time: 169 Source-Version: 2.4.1-1 Space: 144516 Status: attempted Version: 2.4.1-1 -------------------------------------------------------------------------------- Finished at 2019-12-03T20:01:30Z Build needed 00:02:49, 144516k disk space