sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | bwa 0.7.17-7 (ppc64el) Wed, 10 Jan 2024 23:55:09 +0000 | +==============================================================================+ Package: bwa Version: 0.7.17-7 Source Version: 0.7.17-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-575c85f0-dfe2-4bd2-99f9-a5704a43529a' with '<>' I: NOTICE: Log filtering will replace 'build/bwa-XraTIl/resolver-z3oDIo' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian sid InRelease Get:2 http://localhost:3142/debian sid/main ppc64el Packages [9472 kB] Fetched 9472 kB in 1s (8603 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bwa.git Please use: git clone https://salsa.debian.org/med-team/bwa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 245 kB of source archives. Get:1 http://localhost:3142/debian sid/main bwa 0.7.17-7 (dsc) [2116 B] Get:2 http://localhost:3142/debian sid/main bwa 0.7.17-7 (tar) [233 kB] Get:3 http://localhost:3142/debian sid/main bwa 0.7.17-7 (diff) [10.7 kB] Fetched 245 kB in 1s (240 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/bwa-XraTIl/bwa-0.7.17' with '<>' I: NOTICE: Log filtering will replace 'build/bwa-XraTIl' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [746 B] Get:5 copy:/<>/apt_archive ./ Packages [791 B] Fetched 2146 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils cpp-13-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-11-base:ppc64el gcc-13-base:ppc64el gcc-13-cross-base gcc-13-powerpc64le-linux-gnu gcc-13-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:ppc64el libasan8-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:ppc64el libgcc-13-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el libicu72 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libnsl-dev:ppc64el libnsl2:ppc64el libpipeline1 libquadmath0:ppc64el libquadmath0-ppc64el-cross libsimde-dev libssl3:ppc64el libstdc++-11-dev:ppc64el libstdc++-13-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtirpc-dev:ppc64el libtirpc3:ppc64el libtool libtsan0:ppc64el libtsan2-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-ppc64el-cross m4 man-db po-debconf sensible-utils ucf zlib1g:ppc64el zlib1g-dev:ppc64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el libnss-nis:ppc64el libnss-nisplus:ppc64el manpages-dev:ppc64el krb5-doc:ppc64el krb5-user:ppc64el libstdc++-11-doc:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:ppc64el libarchive-cpio-perl krb5-locales:ppc64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils cpp-13-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-11-base:ppc64el gcc-13-base:ppc64el gcc-13-cross-base gcc-13-powerpc64le-linux-gnu gcc-13-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:ppc64el libasan8-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:ppc64el libgcc-13-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el libicu72 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libnsl-dev:ppc64el libnsl2:ppc64el libpipeline1 libquadmath0:ppc64el libquadmath0-ppc64el-cross libsimde-dev libssl3:ppc64el libstdc++-11-dev:ppc64el libstdc++-13-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtirpc-dev:ppc64el libtirpc3:ppc64el libtool libtsan0:ppc64el libtsan2-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-ppc64el-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:ppc64el sensible-utils ucf zlib1g:ppc64el zlib1g-dev:ppc64el 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 97.1 MB of archives. After this operation, 408 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6+b1 [15.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14 [161 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1+b2 [38.1 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-1 [1402 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-powerpc64le-linux-gnu amd64 2.41.50.20231227-1 [2764 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-13-powerpc64le-linux-gnu-base amd64 13.2.0-7cross2 [41.0 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-13-powerpc64le-linux-gnu amd64 13.2.0-7cross2 [9192 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-powerpc64le-linux-gnu amd64 4:13.2.0-2 [4176 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-7cross2 [36.6 kB] Get:25 http://localhost:3142/debian sid/main amd64 libc6-ppc64el-cross all 2.37-12cross1 [1352 kB] Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-ppc64el-cross all 13.2.0-7cross2 [35.0 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-ppc64el-cross all 13.2.0-7cross2 [134 kB] Get:28 http://localhost:3142/debian sid/main amd64 libitm1-ppc64el-cross all 13.2.0-7cross2 [28.3 kB] Get:29 http://localhost:3142/debian sid/main amd64 libatomic1-ppc64el-cross all 13.2.0-7cross2 [9496 B] Get:30 http://localhost:3142/debian sid/main amd64 libasan8-ppc64el-cross all 13.2.0-7cross2 [2516 kB] Get:31 http://localhost:3142/debian sid/main amd64 liblsan0-ppc64el-cross all 13.2.0-7cross2 [1113 kB] Get:32 http://localhost:3142/debian sid/main amd64 libtsan2-ppc64el-cross all 13.2.0-7cross2 [2353 kB] Get:33 http://localhost:3142/debian sid/main amd64 libstdc++6-ppc64el-cross all 13.2.0-7cross2 [727 kB] Get:34 http://localhost:3142/debian sid/main amd64 libubsan1-ppc64el-cross all 13.2.0-7cross2 [1022 kB] Get:35 http://localhost:3142/debian sid/main amd64 libquadmath0-ppc64el-cross all 13.2.0-7cross2 [150 kB] Get:36 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-ppc64el-cross all 13.2.0-7cross2 [1372 kB] Get:37 http://localhost:3142/debian sid/main amd64 gcc-13-powerpc64le-linux-gnu amd64 13.2.0-7cross2 [18.1 MB] Get:38 http://localhost:3142/debian sid/main amd64 gcc-powerpc64le-linux-gnu amd64 4:13.2.0-2 [1484 B] Get:39 http://localhost:3142/debian sid/main amd64 linux-libc-dev-ppc64el-cross all 6.5.8-1cross1 [2004 kB] Get:40 http://localhost:3142/debian sid/main amd64 libc6-dev-ppc64el-cross all 2.37-12cross1 [1811 kB] Get:41 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-ppc64el-cross all 13.2.0-7cross2 [2292 kB] Get:42 http://localhost:3142/debian sid/main amd64 g++-13-powerpc64le-linux-gnu amd64 13.2.0-7cross2 [10.2 MB] Get:43 http://localhost:3142/debian sid/main amd64 g++-powerpc64le-linux-gnu amd64 4:13.2.0-2 [1184 B] Get:44 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:45 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:46 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:49 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:50 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:51 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b2 [313 kB] Get:52 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:53 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:54 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:55 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:56 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:57 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:58 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:59 http://localhost:3142/debian sid/main amd64 crossbuild-essential-ppc64el all 12.10 [3492 B] Get:60 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.9 [82.3 kB] Get:61 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:62 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:63 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:64 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:65 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:66 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:67 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get:68 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:69 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14 [1300 kB] Get:70 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:71 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:72 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.9 [956 kB] Get:73 http://localhost:3142/debian sid/main ppc64el gcc-11-base ppc64el 11.4.0-7 [40.3 kB] Get:74 http://localhost:3142/debian sid/main ppc64el gcc-13-base ppc64el 13.2.0-9 [41.5 kB] Get:75 http://localhost:3142/debian sid/main ppc64el libgcc-s1 ppc64el 13.2.0-9 [35.0 kB] Get:76 http://localhost:3142/debian sid/main ppc64el libc6 ppc64el 2.37-13 [2681 kB] Get:77 http://localhost:3142/debian sid/main ppc64el libasan6 ppc64el 11.4.0-7 [2037 kB] Get:78 http://localhost:3142/debian sid/main ppc64el libatomic1 ppc64el 13.2.0-9 [9756 B] Get:79 http://localhost:3142/debian sid/main ppc64el libcrypt1 ppc64el 1:4.4.36-4 [98.1 kB] Get:80 http://localhost:3142/debian sid/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [132 kB] Get:81 http://localhost:3142/debian sid/main ppc64el libkrb5support0 ppc64el 1.20.1-5 [36.2 kB] Get:82 http://localhost:3142/debian sid/main ppc64el libcom-err2 ppc64el 1.47.0-2+b1 [20.5 kB] Get:83 http://localhost:3142/debian sid/main ppc64el libk5crypto3 ppc64el 1.20.1-5 [89.8 kB] Get:84 http://localhost:3142/debian sid/main ppc64el libkeyutils1 ppc64el 1.6.3-2+b2 [10.4 kB] Get:85 http://localhost:3142/debian sid/main ppc64el libssl3 ppc64el 3.1.4-2 [2043 kB] Get:86 http://localhost:3142/debian sid/main ppc64el libkrb5-3 ppc64el 1.20.1-5 [364 kB] Get:87 http://localhost:3142/debian sid/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-5 [149 kB] Get:88 http://localhost:3142/debian sid/main ppc64el libtirpc3 ppc64el 1.3.4+ds-1 [93.3 kB] Get:89 http://localhost:3142/debian sid/main ppc64el libnsl2 ppc64el 1.3.0-3 [44.3 kB] Get:90 http://localhost:3142/debian sid/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1 [206 kB] Get:91 http://localhost:3142/debian sid/main ppc64el libnsl-dev ppc64el 1.3.0-3 [72.7 kB] Get:92 http://localhost:3142/debian sid/main ppc64el libc6-dev ppc64el 2.37-13 [1817 kB] Get:93 http://localhost:3142/debian sid/main ppc64el libgomp1 ppc64el 13.2.0-9 [137 kB] Get:94 http://localhost:3142/debian sid/main ppc64el libitm1 ppc64el 13.2.0-9 [28.8 kB] Get:95 http://localhost:3142/debian sid/main ppc64el liblsan0 ppc64el 13.2.0-9 [1114 kB] Get:96 http://localhost:3142/debian sid/main ppc64el libtsan0 ppc64el 11.4.0-7 [2022 kB] Get:97 http://localhost:3142/debian sid/main ppc64el libstdc++6 ppc64el 13.2.0-9 [777 kB] Get:98 http://localhost:3142/debian sid/main ppc64el libubsan1 ppc64el 13.2.0-9 [1023 kB] Get:99 http://localhost:3142/debian sid/main ppc64el libquadmath0 ppc64el 13.2.0-9 [149 kB] Get:100 http://localhost:3142/debian sid/main ppc64el libgcc-11-dev ppc64el 11.4.0-7 [1273 kB] Get:101 http://localhost:3142/debian sid/main amd64 libsimde-dev all 0.7.6-1 [384 kB] Get:102 http://localhost:3142/debian sid/main ppc64el libstdc++-11-dev ppc64el 11.4.0-7 [2072 kB] Get:103 http://localhost:3142/debian sid/main ppc64el zlib1g ppc64el 1:1.3.dfsg-3 [86.0 kB] Get:104 http://localhost:3142/debian sid/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3 [917 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 97.1 MB in 1s (193 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 16260 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-6+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-2+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.45-2+b1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-2+b1_amd64.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-14_amd64.deb ... Unpacking gettext-base (0.21-14) ... 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libc6-ppc64el-cross (2.37-12cross1) ... Setting up libdebhelper-perl (13.11.9) ... Setting up libmagic1:amd64 (1:5.45-2+b1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up gcc-13-powerpc64le-linux-gnu-base:amd64 (13.2.0-7cross2) ... Setting up libyaml-perl (1.31-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:ppc64el (13.2.0-9) ... Setting up gcc-13-cross-base (13.2.0-7cross2) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up libitm1-ppc64el-cross (13.2.0-7cross2) ... Setting up libatomic1-ppc64el-cross (13.2.0-7cross2) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up linux-libc-dev-ppc64el-cross (6.5.8-1cross1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libgcc-s1-ppc64el-cross (13.2.0-7cross2) ... Setting up binutils-powerpc64le-linux-gnu (2.41.50.20231227-1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up cpp-13-powerpc64le-linux-gnu (13.2.0-7cross2) ... Setting up libelf1:amd64 (0.190-1+b1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up cpp-powerpc64le-linux-gnu (4:13.2.0-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14) ... Setting up libc6-dev-ppc64el-cross (2.37-12cross1) ... Setting up libtool (2.4.7-7) ... Setting up libquadmath0-ppc64el-cross (13.2.0-7cross2) ... Setting up libasan8-ppc64el-cross (13.2.0-7cross2) ... Setting up libgomp1-ppc64el-cross (13.2.0-7cross2) ... Setting up liblsan0-ppc64el-cross (13.2.0-7cross2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libtsan2-ppc64el-cross (13.2.0-7cross2) ... Setting up dh-autoreconf (20) ... Setting up ucf (3.0043+nmu1) ... Setting up libstdc++6-ppc64el-cross (13.2.0-7cross2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libubsan1-ppc64el-cross (13.2.0-7cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-ppc64el-cross (13.2.0-7cross2) ... Setting up libstdc++-13-dev-ppc64el-cross (13.2.0-7cross2) ... Setting up debhelper (13.11.9) ... Setting up gcc-13-powerpc64le-linux-gnu (13.2.0-7cross2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-13-powerpc64le-linux-gnu (13.2.0-7cross2) ... Setting up gcc-powerpc64le-linux-gnu (4:13.2.0-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up g++-powerpc64le-linux-gnu (4:13.2.0-2) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-ppc64el (12.10) ... Setting up libgcc-s1:ppc64el (13.2.0-9) ... Setting up libc6:ppc64el (2.37-13) ... Setting up libstdc++6:ppc64el (13.2.0-9) ... Setting up liblsan0:ppc64el (13.2.0-9) ... Setting up libitm1:ppc64el (13.2.0-9) ... Setting up libtsan0:ppc64el (11.4.0-7) ... Setting up libkeyutils1:ppc64el (1.6.3-2+b2) ... Setting up libssl3:ppc64el (3.1.4-2) ... Setting up zlib1g:ppc64el (1:1.3.dfsg-3) ... Setting up libcrypt1:ppc64el (1:4.4.36-4) ... Setting up libcom-err2:ppc64el (1.47.0-2+b1) ... Setting up libgomp1:ppc64el (13.2.0-9) ... Setting up libasan6:ppc64el (11.4.0-7) ... Setting up libkrb5support0:ppc64el (1.20.1-5) ... Setting up libquadmath0:ppc64el (13.2.0-9) ... Setting up libatomic1:ppc64el (13.2.0-9) ... Setting up libk5crypto3:ppc64el (1.20.1-5) ... Setting up libubsan1:ppc64el (13.2.0-9) ... Setting up libgcc-11-dev:ppc64el (11.4.0-7) ... Setting up libcrypt-dev:ppc64el (1:4.4.36-4) ... Setting up libkrb5-3:ppc64el (1.20.1-5) ... Setting up libgssapi-krb5-2:ppc64el (1.20.1-5) ... Setting up libtirpc3:ppc64el (1.3.4+ds-1) ... Setting up libtirpc-dev:ppc64el (1.3.4+ds-1) ... Setting up libnsl2:ppc64el (1.3.0-3) ... Setting up libnsl-dev:ppc64el (1.3.0-3) ... Setting up libc6-dev:ppc64el (2.37-13) ... Setting up libstdc++-11-dev:ppc64el (11.4.0-7) ... Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231227-1 dpkg-dev_1.22.2 g++-11_11.4.0-7 g++-13_13.2.0-9 gcc-11_11.4.0-7 gcc-13_13.2.0-9 libc6-dev_2.37-13 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-ppc64el-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-ppc64el-cross_13.2.0-7cross2 linux-libc-dev_6.6.9-1 Package versions: adduser_3.137 apt_2.7.8 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41.50.20231227-1 binutils-common_2.41.50.20231227-1 binutils-powerpc64le-linux-gnu_2.41.50.20231227-1 binutils-x86-64-linux-gnu_2.41.50.20231227-1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.4-3+b1 cpp_4:13.2.0-2 cpp-11_11.4.0-7 cpp-13_13.2.0-9 cpp-13-powerpc64le-linux-gnu_13.2.0-7cross2 cpp-powerpc64le-linux-gnu_4:13.2.0-2 cross-config_2.6.20 crossbuild-essential-ppc64el_12.10 dash_0.5.12-6 debconf_1.5.83 debhelper_13.11.9 debian-archive-keyring_2023.4 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.2 dpkg-cross_2.6.20 dpkg-dev_1.22.2 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.32.2-1+b1 file_1:5.45-2+b1 findutils_4.9.0-5 g++_4:13.2.0-2 g++-11_11.4.0-7 g++-13_13.2.0-9 g++-13-powerpc64le-linux-gnu_13.2.0-7cross2 g++-powerpc64le-linux-gnu_4:13.2.0-2 gcc_4:13.2.0-2 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-13 gcc-13_13.2.0-9 gcc-13-base_13.2.0-9 gcc-13-cross-base_13.2.0-7cross2 gcc-13-powerpc64le-linux-gnu_13.2.0-7cross2 gcc-13-powerpc64le-linux-gnu-base_13.2.0-7cross2 gcc-9-base_9.5.0-4 gcc-powerpc64le-linux-gnu_4:13.2.0-2 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1+b1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-4 libapt-pkg6.0_2.7.8 libarchive-zip-perl_1.68-1 libasan6_11.4.0-7 libasan8_13.2.0-9 libasan8-ppc64el-cross_13.2.0-7cross2 libatomic1_13.2.0-9 libatomic1-ppc64el-cross_13.2.0-7cross2 libattr1_1:2.5.1-5 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41.50.20231227-1 libblkid1_2.39.3-6 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-13 libc-dev-bin_2.37-13 libc6_2.37-13 libc6-dev_2.37-13 libc6-dev-ppc64el-cross_2.37-12cross1 libc6-ppc64el-cross_2.37-12cross1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4+b2 libcc1-0_13.2.0-9 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41.50.20231227-1 libctf0_2.41.50.20231227-1 libdb5.3_5.3.28+dfsg2-4+b1 libdebconfclient0_0.271 libdebhelper-perl_13.11.9 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.2 libelf1_0.190-1+b1 libext2fs2_1.47.0-2+b1 libfakeroot_1.32.2-1+b1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-7 libgcc-13-dev_13.2.0-9 libgcc-13-dev-ppc64el-cross_13.2.0-7cross2 libgcc-s1_13.2.0-9 libgcc-s1-ppc64el-cross_13.2.0-7cross2 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-9 libgomp1-ppc64el-cross_13.2.0-7cross2 libgpg-error0_1.47-3 libgprofng0_2.41.50.20231227-1 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhwasan0_13.2.0-9 libicu72_72.1-4 libidn2-0_2.3.4-1+b2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_13.2.0-9 libitm1-ppc64el-cross_13.2.0-7cross2 libjansson4_2.14-2+b2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2+b2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 liblocale-gettext-perl_1.07-6+b1 liblsan0_13.2.0-9 liblsan0-ppc64el-cross_13.2.0-7cross2 liblz4-1_1.9.4-1+b2 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2+b1 libmagic1_1:5.45-2+b1 libmd0_1.1.0-2 libmount1_2.39.3-6 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1 libnettle8_3.9.1-2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpam-modules_1.5.2-9.1+b1 libpam-modules-bin_1.5.2-9.1+b1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1+b1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.38_5.38.2-2 libpipeline1_1.5.7-1+b2 libquadmath0_13.2.0-9 libquadmath0-ppc64el-cross_13.2.0-7cross2 libseccomp2_2.5.5-1 libselinux1_3.5-1+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b2 libsepol2_3.5-2 libsframe1_2.41.50.20231227-1 libsimde-dev_0.7.6-1 libsmartcols1_2.39.3-6 libss2_1.47.0-2+b1 libssl3_3.1.4-2 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-ppc64el-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-ppc64el-cross_13.2.0-7cross2 libsub-override-perl_0.10-1 libsystemd0_255.2-4 libtasn1-6_4.19.0-3+b2 libtext-glob-perl_0.11-3 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-7 libtsan2_13.2.0-9 libtsan2-ppc64el-cross_13.2.0-7cross2 libubsan1_13.2.0-9 libubsan1-ppc64el-cross_13.2.0-7cross2 libuchardet0_0.0.8-1 libudev1_255.2-4 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b2 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b2 libxxhash0_0.8.2-2 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.9-1 linux-libc-dev-ppc64el-cross_6.5.8-1cross1 login_1:4.13+dfsg1-3+b1 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 mount_2.39.3-6 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 passwd_1:4.13+dfsg1-3+b1 patch_2.7.6-7 perl_5.38.2-2 perl-base_5.38.2-2 perl-modules-5.34_5.34.0-5 perl-modules-5.38_5.38.2-2 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.35+dfsg-2 tzdata_2023d-1 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: bwa Binary: bwa, libbwa-dev Architecture: any Version: 0.7.17-7 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Carlos Borroto , Ognyan Kulev , Michael R. Crusoe Homepage: http://bio-bwa.sourceforge.net/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/bwa Vcs-Git: https://salsa.debian.org/med-team/bwa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libsimde-dev Package-List: bwa deb science optional arch=any libbwa-dev deb libdevel optional arch=any Checksums-Sha1: 77f9aac723110227ea51cb42011336d291d03723 232593 bwa_0.7.17.orig.tar.gz 6fec29cceeea8141a11afd85a0af448fed80ea6e 10668 bwa_0.7.17-7.debian.tar.xz Checksums-Sha256: 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd 232593 bwa_0.7.17.orig.tar.gz 5a314c240f2dddb9f0ab848fe2b1bacf37f794d1addbf023187ba5ce5aa8f1e7 10668 bwa_0.7.17-7.debian.tar.xz Files: 63c54309e7dda2311d4658e18c7adffb 232593 bwa_0.7.17.orig.tar.gz 3640eaef26aa14b5c4428dc2012586a7 10668 bwa_0.7.17-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmIlHc0ACgkQYAMWptwn 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dpkg-source: info: extracting bwa in /<> dpkg-source: info: unpacking bwa_0.7.17.orig.tar.gz dpkg-source: info: unpacking bwa_0.7.17-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_heap_block_overrun dpkg-source: info: applying fix_build_on_freebsd.patch dpkg-source: info: applying CVE-2019-10269.patch dpkg-source: info: applying simde dpkg-source: info: applying spelling dpkg-source: info: applying gcc10.patch dpkg-source: info: applying hurd Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.C99V8dHAfb/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-575c85f0-dfe2-4bd2-99f9-a5704a43529a SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package bwa dpkg-buildpackage: info: source version 0.7.17-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f gmon.out *.o a.out bwa *~ *.a make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- CFLAGS="-Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now" DFLAGS="-DHAVE_PTHREAD" make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=powerpc64le-linux-gnu-pkg-config CXX=powerpc64le-linux-gnu-g\+\+ CC=powerpc64le-linux-gnu-gcc "CFLAGS=-Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now" DFLAGS=-DHAVE_PTHREAD make[2]: Entering directory '/<>' powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD utils.c -o utils.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD kthread.c -o kthread.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD kstring.c -o kstring.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD ksw.c -o ksw.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwt.c -o bwt.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bntseq.c -o bntseq.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwa.c -o bwa.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwamem.c -o bwamem.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwamem_pair.c -o bwamem_pair.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwamem_extra.c -o bwamem_extra.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD malloc_wrap.c -o malloc_wrap.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD QSufSort.c -o QSufSort.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o bwt_gen.c: In function ‘BWTIncBuildRelativeRank’: bwt_gen.c:879:17: warning: variable ‘oldInverseSa0RelativeRank’ set but not used [-Wunused-but-set-variable] 879 | bgint_t oldInverseSa0RelativeRank = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~ bwt_gen.c: In function ‘BWTIncMergeBwt’: bwt_gen.c:953:22: warning: variable ‘bitsInWordMinusBitPerChar’ set but not used [-Wunused-but-set-variable] 953 | unsigned int bitsInWordMinusBitPerChar; | ^~~~~~~~~~~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD rope.c -o rope.o rope.c: In function ‘rope_restore_node’: rope.c:282:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 282 | fread(&is_bottom, 1, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ rope.c:283:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 283 | fread(&n, 2, 1, fp); | ^~~~~~~~~~~~~~~~~~~ rope.c:291:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 291 | fread(p[i].c, 8, 6, fp); | ^~~~~~~~~~~~~~~~~~~~~~~ rope.c:292:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 292 | fread(q, 2, 1, fp); | ^~~~~~~~~~~~~~~~~~ rope.c:293:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 293 | fread(q + 1, 1, *q, fp); | ^~~~~~~~~~~~~~~~~~~~~~~ rope.c: In function ‘rope_restore’: rope.c:312:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 312 | fread(&r->max_nodes, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rope.c:313:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 313 | fread(&r->block_len, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD rle.c -o rle.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD is.c -o is.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwtindex.c -o bwtindex.o ar -csru libbwa.a utils.o kthread.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o bwamem_extra.o malloc_wrap.o QSufSort.o bwt_gen.o rope.o rle.o is.o bwtindex.o ar: `u' modifier ignored since `D' is the default (see `U') powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwashm.c -o bwashm.o bwashm.c: In function ‘bwa_shm_stage’: bwashm.c:33:9: warning: ignoring return value of ‘ftruncate’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 33 | ftruncate(shmid, BWA_CTL_SIZE); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bwashm.c:70:9: warning: ignoring return value of ‘ftruncate’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | ftruncate(shmid, idx->l_mem); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwase.c -o bwase.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwtgap.c -o bwtgap.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwtaln.c -o bwtaln.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bamlite.c -o bamlite.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwape.c -o bwape.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD kopen.c -o kopen.o In file included from /usr/powerpc64le-linux-gnu/include/string.h:535, from kopen.c:6: In function ‘strncpy’, inlined from ‘cmd2argv’ at kopen.c:248:2, inlined from ‘kopen’ at kopen.c:306:13: /usr/powerpc64le-linux-gnu/include/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ specified bound between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘cmd2argv’, inlined from ‘kopen’ at kopen.c:306:13: kopen.c:247:32: warning: argument 1 range [18446744071562067969, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 247 | argv[0] = str = (char*)calloc(end - beg + 1, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from kopen.c:7: /usr/powerpc64le-linux-gnu/include/stdlib.h: In function ‘kopen’: /usr/powerpc64le-linux-gnu/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD pemerge.c -o pemerge.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD maxk.c -o maxk.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD fastmap.c -o fastmap.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwtsw2_pair.c -o bwtsw2_pair.o powerpc64le-linux-gnu-gcc -c -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD main.c -o main.o powerpc64le-linux-gnu-gcc -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwashm.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o bwape.o kopen.o pemerge.o maxk.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o fastmap.o bwtsw2_pair.o main.o -o bwa -L. -lbwa -lm -lz -lpthread -lrt make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS.md make[1]: Leaving directory '/<>' dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a debian/rules override_dh_gencontrol make[1]: Entering directory '/<>' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.6-1), " dpkg-gencontrol: warning: package bwa: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package bwa: substitution variable ${perl:Depends} unused, but is defined make[1]: Leaving directory '/<>' dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'bwa' in '../bwa_0.7.17-7_ppc64el.deb'. dpkg-deb: building package 'bwa-dbgsym' in '../bwa-dbgsym_0.7.17-7_ppc64el.deb'. dpkg-deb: building package 'libbwa-dev' in '../libbwa-dev_0.7.17-7_ppc64el.deb'. dpkg-genbuildinfo --build=any -O../bwa_0.7.17-7_ppc64el.buildinfo dpkg-genchanges --build=any -O../bwa_0.7.17-7_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-01-10T23:55:51Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bwa_0.7.17-7_ppc64el.changes: ----------------------------- Format: 1.8 Date: Sun, 06 Mar 2022 21:43:27 +0100 Source: bwa Binary: bwa bwa-dbgsym libbwa-dev Built-For-Profiles: cross nocheck Architecture: ppc64el Version: 0.7.17-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: bwa - Burrows-Wheeler Aligner libbwa-dev - Burrows-Wheeler Aligner source files Changes: bwa (0.7.17-7) unstable; urgency=medium . * Team upload * Installing all header files in /usr/include/bwa * Standards-Version: 4.6.0 (routine-update) . [ Steffen Möller ] * Update metadata - ref to guix Checksums-Sha1: 5552b709ebedca7be048b0fd2a4b00990927b956 460304 bwa-dbgsym_0.7.17-7_ppc64el.deb 193a572b4e09406757f7e25acea472c03f6c62b6 5669 bwa_0.7.17-7_ppc64el.buildinfo 785206256fed1e967fb38ef2e05ec837f7974aef 233488 bwa_0.7.17-7_ppc64el.deb f6426cf281cdd54f0df9930774353cae40d7d536 174608 libbwa-dev_0.7.17-7_ppc64el.deb Checksums-Sha256: e9f7b81480007d16ab451a661319ff0a8f749f5f2701aa275472e5800d191af4 460304 bwa-dbgsym_0.7.17-7_ppc64el.deb bf2ac1903b8554a565acd8920e63b956c484c2ef46b9c70fe0e30ebd75cde9df 5669 bwa_0.7.17-7_ppc64el.buildinfo dbedb1887137aaf6eb63cf91aef517a1e212db98803328ea5ba42ff95c1014ef 233488 bwa_0.7.17-7_ppc64el.deb 84f222bed41f564461682873d4ff2faf18b6374a4002a9027cb746c38db4fbbf 174608 libbwa-dev_0.7.17-7_ppc64el.deb Files: 5f62633598b25362337ee53b5cb5641f 460304 debug optional bwa-dbgsym_0.7.17-7_ppc64el.deb 1efe386b9857970297e59e5190e562b6 5669 science optional bwa_0.7.17-7_ppc64el.buildinfo 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debhelper (= 13.11.9), debianutils (= 5.16), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.2), dpkg-dev (= 1.22.2), dwz (= 0.15-1), file (= 1:5.45-2+b1), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2), g++-13 (= 13.2.0-9), gcc (= 4:13.2.0-2), gcc-11 (= 11.4.0-7), gcc-11-base (= 11.4.0-7), gcc-13 (= 13.2.0-9), gcc-13-base (= 13.2.0-9), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-4), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.4.0-7), libasan8 (= 13.2.0-9), libatomic1 (= 13.2.0-9), libattr1 (= 1:2.5.1-5), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.50.20231227-1), libblkid1 (= 2.39.3-6), libbz2-1.0 (= 1.0.8-5+b2), libc-bin (= 2.37-13), libc-dev-bin (= 2.37-13), libc6 (= 2.37-13), libc6-dev (= 2.37-13), libcap-ng0 (= 0.8.4-1), libcap2 (= 1:2.66-4+b2), libcc1-0 (= 13.2.0-9), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.41.50.20231227-1), libctf0 (= 2.41.50.20231227-1), libdb5.3 (= 5.3.28+dfsg2-4+b1), libdebconfclient0 (= 0.271), libdebhelper-perl (= 13.11.9), libdpkg-perl (= 1.22.2), libelf1 (= 0.190-1+b1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.4.0-7), libgcc-13-dev (= 13.2.0-9), libgcc-s1 (= 13.2.0-9), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgmp10 (= 2:6.3.0+dfsg-2), libgomp1 (= 13.2.0-9), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.41.50.20231227-1), libgssapi-krb5-2 (= 1.20.1-5), libhwasan0 (= 13.2.0-9), libicu72 (= 72.1-4), libisl23 (= 0.26-3+b2), libitm1 (= 13.2.0-9), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.20.1-5), libkeyutils1 (= 1.6.3-2+b2), libkrb5-3 (= 1.20.1-5), libkrb5support0 (= 1.20.1-5), liblsan0 (= 13.2.0-9), liblz4-1 (= 1.9.4-1+b2), liblzma5 (= 5.4.5-0.3), libmagic-mgc (= 1:5.45-2+b1), libmagic1 (= 1:5.45-2+b1), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-6), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libnumber-compare-perl (= 0.03-3), libpam-modules (= 1.5.2-9.1+b1), libpam-modules-bin (= 1.5.2-9.1+b1), libpam-runtime (= 1.5.2-9.1), libpam0g (= 1.5.2-9.1+b1), libpcre2-8-0 (= 10.42-4), libperl5.38 (= 5.38.2-2), libpipeline1 (= 1.5.7-1+b2), libquadmath0 (= 13.2.0-9), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-1+b2), libsframe1 (= 2.41.50.20231227-1), libsimde-dev (= 0.7.6-1), libsmartcols1 (= 2.39.3-6), libssl3 (= 3.1.4-2), libstdc++-13-dev (= 13.2.0-9), libstdc++6 (= 13.2.0-9), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.2-4), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan0 (= 11.4.0-7), libtsan2 (= 13.2.0-9), libubsan1 (= 13.2.0-9), libuchardet0 (= 0.0.8-1), libudev1 (= 255.2-4), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-6), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.9-1), login (= 1:4.13+dfsg1-3+b1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), patch (= 2.7.6-7), perl (= 5.38.2-2), perl-base (= 5.38.2-2), perl-modules-5.38 (= 5.38.2-2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-5), tar (= 1.35+dfsg-2), usrmerge (= 38), util-linux (= 2.39.3-6), xz-utils (= 5.4.5-0.3), zlib1g (= 1:1.3.dfsg-3), zlib1g-dev (= 1:1.3.dfsg-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1646599407" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bwa-dbgsym_0.7.17-7_ppc64el.deb ------------------------------- new Debian package, version 2.0. size 460304 bytes: control archive=536 bytes. 358 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: bwa-dbgsym Source: bwa Version: 0.7.17-7 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 485 Depends: bwa (= 0.7.17-7) Section: debug Priority: optional Description: debug symbols for bwa Build-Ids: b5cbf08be8bdb29a0660a97490b90fc1ccb338e0 drwxr-xr-x root/root 0 2022-03-06 20:43 ./ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/lib/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/lib/debug/.build-id/b5/ -rw-r--r-- root/root 485800 2022-03-06 20:43 ./usr/lib/debug/.build-id/b5/cbf08be8bdb29a0660a97490b90fc1ccb338e0.debug drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-03-06 20:43 ./usr/share/doc/bwa-dbgsym -> bwa bwa_0.7.17-7_ppc64el.deb ------------------------ new Debian package, version 2.0. size 233488 bytes: control archive=1308 bytes. 1017 bytes, 23 lines control 916 bytes, 14 lines md5sums Package: bwa Version: 0.7.17-7 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 575 Depends: libc6 (>= 2.34), zlib1g (>= 1:1.1.4) Recommends: perl Suggests: samtools Built-Using: simde (= 0.7.6-1) Section: science Priority: optional Homepage: http://bio-bwa.sourceforge.net/ Description: Burrows-Wheeler Aligner BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads. drwxr-xr-x root/root 0 2022-03-06 20:43 ./ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/bin/ -rwxr-xr-x root/root 526952 2022-03-06 20:43 ./usr/bin/bwa drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/bash-completion/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/bash-completion/completions/ -rw-r--r-- root/root 384 2022-03-06 14:42 ./usr/share/bash-completion/completions/bwa drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/bwa/ -rwxr-xr-x root/root 613 2022-03-06 20:43 ./usr/share/bwa/qualfa2fq.pl -rwxr-xr-x root/root 727 2022-03-06 20:43 ./usr/share/bwa/xa2multi.pl drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/doc/bwa/ -rw-r--r-- root/root 4216 2017-10-23 17:10 ./usr/share/doc/bwa/README-alt.md.gz -rw-r--r-- root/root 3511 2017-10-23 17:10 ./usr/share/doc/bwa/README.md.gz -rw-r--r-- root/root 823 2022-03-06 20:43 ./usr/share/doc/bwa/changelog.Debian.gz -rw-r--r-- root/root 14186 2022-03-06 20:43 ./usr/share/doc/bwa/changelog.gz -rw-r--r-- root/root 4397 2022-03-06 20:40 ./usr/share/doc/bwa/copyright drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/doc/bwa/examples/ -rw-r--r-- root/root 96 2022-03-06 14:42 ./usr/share/doc/bwa/examples/read1.fq -rw-r--r-- root/root 96 2022-03-06 14:42 ./usr/share/doc/bwa/examples/read2.fq -rw-r--r-- root/root 384 2022-03-06 14:42 ./usr/share/doc/bwa/examples/reads.fq -rw-r--r-- root/root 192 2022-03-06 14:42 ./usr/share/doc/bwa/examples/ref.fa drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/man/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/man/man1/ -rw-r--r-- root/root 10609 2022-03-06 20:43 ./usr/share/man/man1/bwa.1.gz libbwa-dev_0.7.17-7_ppc64el.deb ------------------------------- new Debian package, version 2.0. size 174608 bytes: control archive=1600 bytes. 1057 bytes, 24 lines control 1558 bytes, 26 lines md5sums Package: libbwa-dev Source: bwa Version: 0.7.17-7 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 554 Suggests: samtools Built-Using: simde (= 0.7.6-1) Section: libdevel Priority: optional Homepage: http://bio-bwa.sourceforge.net/ Description: Burrows-Wheeler Aligner source files BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads. . This package contains the source files for use in other programs. drwxr-xr-x root/root 0 2022-03-06 20:43 ./ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/include/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/include/bwa/ -rw-r--r-- root/root 1646 2017-10-23 17:10 ./usr/include/bwa/QSufSort.h -rw-r--r-- root/root 3124 2017-10-23 17:10 ./usr/include/bwa/bamlite.h -rw-r--r-- root/root 2775 2017-10-23 17:10 ./usr/include/bwa/bntseq.h -rw-r--r-- root/root 2044 2017-10-23 17:10 ./usr/include/bwa/bwa.h -rw-r--r-- root/root 7996 2022-03-06 20:43 ./usr/include/bwa/bwamem.h -rw-r--r-- root/root 1033 2017-10-23 17:10 ./usr/include/bwa/bwase.h -rw-r--r-- root/root 4966 2017-10-23 17:10 ./usr/include/bwa/bwt.h -rw-r--r-- root/root 653 2017-10-23 17:10 ./usr/include/bwa/bwt_lite.h -rw-r--r-- root/root 3833 2017-10-23 17:10 ./usr/include/bwa/bwtaln.h -rw-r--r-- root/root 996 2017-10-23 17:10 ./usr/include/bwa/bwtgap.h -rw-r--r-- root/root 1524 2017-10-23 17:10 ./usr/include/bwa/bwtsw2.h -rw-r--r-- root/root 15889 2017-10-23 17:10 ./usr/include/bwa/kbtree.h -rw-r--r-- root/root 20888 2017-10-23 17:10 ./usr/include/bwa/khash.h -rw-r--r-- root/root 8857 2017-10-23 17:10 ./usr/include/bwa/kseq.h -rw-r--r-- root/root 9718 2017-10-23 17:10 ./usr/include/bwa/ksort.h -rw-r--r-- root/root 2332 2017-10-23 17:10 ./usr/include/bwa/kstring.h -rw-r--r-- root/root 5091 2017-10-23 17:10 ./usr/include/bwa/ksw.h -rw-r--r-- root/root 2940 2017-10-23 17:10 ./usr/include/bwa/kvec.h -rw-r--r-- root/root 1183 2017-10-23 17:10 ./usr/include/bwa/malloc_wrap.h -rw-r--r-- root/root 1910 2022-03-06 20:43 ./usr/include/bwa/rle.h -rw-r--r-- root/root 1548 2017-10-23 17:10 ./usr/include/bwa/rope.h -rw-r--r-- root/root 3821 2017-10-23 17:10 ./usr/include/bwa/utils.h drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/lib/ -rw-r--r-- root/root 423264 2022-03-06 20:43 ./usr/lib/libbwa.a drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-03-06 20:43 ./usr/share/doc/libbwa-dev/ -rw-r--r-- root/root 825 2022-03-06 20:43 ./usr/share/doc/libbwa-dev/changelog.Debian.gz -rw-r--r-- root/root 14186 2022-03-06 20:43 ./usr/share/doc/libbwa-dev/changelog.gz -rw-r--r-- root/root 4397 2022-03-06 20:40 ./usr/share/doc/libbwa-dev/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1328 B] Get:5 copy:/<>/apt_archive ./ Packages [1411 B] Fetched 3354 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: The following packages have unmet dependencies: libtext-xslate-perl : Depends: perlapi-5.36.0 but it is not installable Depends: libmouse-perl but it is not going to be installed libtime-moment-perl : Depends: perlapi-5.36.0 but it is not installable libcpanel-json-xs-perl : Depends: perlapi-5.36.0 but it is not installable Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:ppc64el : Depends: lintian:amd64 E: External solver failed with: The following packages have unmet dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 9740 Build-Time: 20 Distribution: unstable Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 12 Job: bwa_0.7.17-7 Lintian: error Machine Architecture: amd64 Package: bwa Package-Time: 42 Source-Version: 0.7.17-7 Space: 9740 Status: successful Version: 0.7.17-7 -------------------------------------------------------------------------------- Finished at 2024-01-10T23:55:51Z Build needed 00:00:42, 9740k disk space