sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | cd-hit 4.8.1-2 (ppc64el) Thu, 12 Dec 2019 04:54:53 +0000 | +==============================================================================+ Package: cd-hit Version: 4.8.1-2 Source Version: 4.8.1-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-efa1189b-7f4b-4791-b228-d481c849069f' with '<>' I: NOTICE: Log filtering will replace 'build/cd-hit-pqyzQ2/resolver-K4Q6fj' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-11-0818.04.pdiff [13.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-11-1413.57.pdiff [6432 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-11-2014.23.pdiff [11.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-12-0213.02.pdiff [6509 B] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-12-0213.02.pdiff [6509 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-11-0818.04.pdiff [5737 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-11-1413.57.pdiff [6456 B] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-11-2014.23.pdiff [14.7 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-12-0213.02.pdiff [10.1 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-12-0213.02.pdiff [10.1 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main ppc64el Packages [7967 kB] Fetched 8240 kB in 2s (4138 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libselinux1 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 86.6 kB of archives. After this operation, 4096 B disk space will be freed. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libselinux1 amd64 3.0-1 [86.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 86.6 kB in 0s (0 B/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15016 files and directories currently installed.) Preparing to unpack .../libselinux1_3.0-1_amd64.deb ... Unpacking libselinux1:amd64 (3.0-1) over (2.9-3+b1) ... Setting up libselinux1:amd64 (3.0-1) ... Processing triggers for libc-bin (2.29-6) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'cd-hit' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/cd-hit.git Please use: git clone https://salsa.debian.org/med-team/cd-hit.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 955 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main cd-hit 4.8.1-2 (dsc) [1986 B] Get:2 http://debian.oregonstate.edu/debian unstable/main cd-hit 4.8.1-2 (tar) [946 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main cd-hit 4.8.1-2 (diff) [7712 B] Fetched 955 kB in 0s (33.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/cd-hit-pqyzQ2/cd-hit-4.8.1' with '<>' I: NOTICE: Log filtering will replace 'build/cd-hit-pqyzQ2' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 12~), help2man, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper (>= 12~), help2man, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [417 B] Get:5 copy:/<>/apt_archive ./ Packages [506 B] Fetched 1880 B in 0s (91.0 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdmainutils cpp-9-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-9-base:ppc64el gcc-9-cross-base gcc-9-powerpc64le-linux-gnu gcc-9-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan5:ppc64el libasan5-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libbsd0 libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt1:ppc64el libcrypt1-dev:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:ppc64el libgcc-9-dev-ppc64el-cross libgcc1:ppc64el libgcc1-ppc64el-cross libglib2.0-0 libgomp1:ppc64el libgomp1-ppc64el-cross libicu63 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libpipeline1 libquadmath0:ppc64el libquadmath0-ppc64el-cross libsigsegv2 libstdc++-9-dev:ppc64el libstdc++-9-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db po-debconf sensible-utils ucf zlib1g:ppc64el zlib1g-dev:ppc64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el manpages-dev:ppc64el libstdc++-9-doc:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:ppc64el libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdmainutils cpp-9-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-9-base:ppc64el gcc-9-cross-base gcc-9-powerpc64le-linux-gnu gcc-9-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan5:ppc64el libasan5-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libbsd0 libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt1:ppc64el libcrypt1-dev:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:ppc64el libgcc-9-dev-ppc64el-cross libgcc1:ppc64el libgcc1-ppc64el-cross libglib2.0-0 libgomp1:ppc64el libgomp1-ppc64el-cross libicu63 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libpipeline1 libquadmath0:ppc64el libquadmath0-ppc64el-cross libsigsegv2 libstdc++-9-dev:ppc64el libstdc++-9-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:ppc64el sensible-utils ucf zlib1g:ppc64el zlib1g-dev:ppc64el 0 upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 66.6 MB of archives. After this operation, 293 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-9-base ppc64el 9.2.1-21 [194 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-6 [253 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-6 [119 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-6 [67.2 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-powerpc64le-linux-gnu amd64 2.33.1-5 [2238 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-powerpc64le-linux-gnu-base amd64 9.2.1-21cross1 [195 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-powerpc64le-linux-gnu amd64 9.2.1-21cross1 [6740 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-powerpc64le-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-21cross1 [190 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-ppc64el-cross all 2.29-1cross7 [1539 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-ppc64el-cross all 1:9.2.1-21cross1 [29.8 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-ppc64el-cross all 9.2.1-21cross1 [90.7 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-ppc64el-cross all 9.2.1-21cross1 [29.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-ppc64el-cross all 9.2.1-21cross1 [9700 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-ppc64el-cross all 9.2.1-21cross1 [401 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-ppc64el-cross all 9.2.1-21cross1 [147 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-ppc64el-cross all 9.2.1-21cross1 [296 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-ppc64el-cross all 9.2.1-21cross1 [500 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-ppc64el-cross all 9.2.1-21cross1 [139 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0-ppc64el-cross all 9.2.1-21cross1 [148 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-ppc64el-cross all 9.2.1-21cross1 [1262 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-powerpc64le-linux-gnu amd64 9.2.1-21cross1 [7109 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-powerpc64le-linux-gnu amd64 4:9.2.1-3.1 [1480 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-ppc64el-cross all 5.2.9-2cross7 [1323 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-ppc64el-cross all 2.29-1cross7 [2671 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-ppc64el-cross all 9.2.1-21cross1 [1728 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-powerpc64le-linux-gnu amd64 9.2.1-21cross1 [7328 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 g++-powerpc64le-linux-gnu amd64 4:9.2.1-3.1 [1188 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-ppc64el all 12.8 [6652 B] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.7.2 [174 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-1 [14.6 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.3-2 [1320 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.7.2 [1018 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.11 [180 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc1 ppc64el 1:9.2.1-21 [29.8 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt1 ppc64el 1:4.4.10-5 [96.8 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6 ppc64el 2.29-6 [2801 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main ppc64el libasan5 ppc64el 9.2.1-21 [408 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main ppc64el libatomic1 ppc64el 9.2.1-21 [9832 B] Get:84 http://debian.oregonstate.edu/debian unstable/main ppc64el linux-libc-dev ppc64el 5.3.15-1 [1010 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt1-dev ppc64el 1:4.4.10-5 [121 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6-dev ppc64el 2.29-6 [2663 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main ppc64el libgomp1 ppc64el 9.2.1-21 [92.5 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main ppc64el libitm1 ppc64el 9.2.1-21 [29.7 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main ppc64el liblsan0 ppc64el 9.2.1-21 [147 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main ppc64el libtsan0 ppc64el 9.2.1-21 [303 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++6 ppc64el 9.2.1-21 [540 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main ppc64el libubsan1 ppc64el 9.2.1-21 [139 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main ppc64el libquadmath0 ppc64el 9.2.1-21 [148 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-9-dev ppc64el 9.2.1-21 [1257 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++-9-dev ppc64el 9.2.1-21 [1722 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-1+b1 [94.8 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-1+b1 [215 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 66.6 MB in 1s (68.1 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15015 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... 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Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6) ... Setting up gcc-9-powerpc64le-linux-gnu-base:amd64 (9.2.1-21cross1) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cpp-9-powerpc64le-linux-gnu (9.2.1-21cross1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-9-cross-base (9.2.1-21cross1) ... Setting up libitm1-ppc64el-cross (9.2.1-21cross1) ... Setting up libatomic1-ppc64el-cross (9.2.1-21cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up linux-libc-dev-ppc64el-cross (5.2.9-2cross7) ... Setting up libsub-override-perl (0.09-2) ... Setting up binutils-powerpc64le-linux-gnu (2.33.1-5) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-8) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up cpp-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Setting up gcc-9-base:ppc64el (9.2.1-21) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libgcc1-ppc64el-cross (1:9.2.1-21cross1) ... Setting up libc6-dev-ppc64el-cross (2.29-1cross7) ... Setting up libtool (2.4.6-11) ... Setting up libquadmath0-ppc64el-cross (9.2.1-21cross1) ... Setting up libasan5-ppc64el-cross (9.2.1-21cross1) ... Setting up m4 (1.4.18-4) ... Setting up libgomp1-ppc64el-cross (9.2.1-21cross1) ... Setting up liblsan0-ppc64el-cross (9.2.1-21cross1) ... Setting up help2man (1.47.11) ... Setting up libtsan0-ppc64el-cross (9.2.1-21cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++6-ppc64el-cross (9.2.1-21cross1) ... Setting up autoconf (2.69-11) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libubsan1-ppc64el-cross (9.2.1-21cross1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-9-dev-ppc64el-cross (9.2.1-21cross1) ... Setting up gcc-9-powerpc64le-linux-gnu (9.2.1-21cross1) ... Setting up po-debconf (1.0.21) ... Setting up libstdc++-9-dev-ppc64el-cross (9.2.1-21cross1) ... Setting up gcc-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-9-powerpc64le-linux-gnu (9.2.1-21cross1) ... Setting up g++-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-ppc64el (12.8) ... Setting up libcrypt1:ppc64el (1:4.4.10-5) ... Setting up libcrypt1-dev:ppc64el (1:4.4.10-5) ... Setting up libc6:ppc64el (2.29-6) ... Setting up libc6-dev:ppc64el (2.29-6) ... Setting up libitm1:ppc64el (9.2.1-21) ... Setting up libgcc1:ppc64el (1:9.2.1-21) ... Setting up debhelper (12.7.2) ... Setting up zlib1g:ppc64el (1:1.2.11.dfsg-1+b1) ... Setting up libgomp1:ppc64el (9.2.1-21) ... Setting up dh-autoreconf (19) ... Setting up libasan5:ppc64el (9.2.1-21) ... Setting up libquadmath0:ppc64el (9.2.1-21) ... Setting up libatomic1:ppc64el (9.2.1-21) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-1+b1) ... Setting up libstdc++6:ppc64el (9.2.1-21) ... Setting up liblsan0:ppc64el (9.2.1-21) ... Setting up libtsan0:ppc64el (9.2.1-21) ... Setting up libubsan1:ppc64el (9.2.1-21) ... Setting up libgcc-9-dev:ppc64el (9.2.1-21) ... Setting up libstdc++-9-dev:ppc64el (9.2.1-21) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.29-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33.1-5 dpkg-dev_1.19.7 g++-8_8.3.0-26 g++-9_9.2.1-21 gcc-8_8.3.0-26 gcc-9_9.2.1-21 libc6-dev_2.29-6 libstdc++-8-dev_8.3.0-26 libstdc++-9-dev_9.2.1-21 libstdc++-9-dev-ppc64el-cross_9.2.1-21cross1 libstdc++6_9.2.1-21 libstdc++6-ppc64el-cross_9.2.1-21cross1 linux-libc-dev_5.3.15-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 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libdebconfclient0_0.250 libdebhelper-perl_12.7.2 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-26 libgcc-9-dev_9.2.1-21 libgcc-9-dev-ppc64el-cross_9.2.1-21cross1 libgcc1_1:9.2.1-21 libgcc1-ppc64el-cross_1:9.2.1-21cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-5 libgomp1_9.2.1-21 libgomp1-ppc64el-cross_9.2.1-21cross1 libgpg-error0_1.36-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22-2 libitm1_9.2.1-21 libitm1-ppc64el-cross_9.2.1-21cross1 liblocale-gettext-perl_1.07-4 liblsan0_9.2.1-21 liblsan0-ppc64el-cross_9.2.1-21cross1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-6 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: cd-hit Binary: cd-hit Architecture: any Version: 4.8.1-2 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: http://weizhong-lab.ucsd.edu/cd-hit/ Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/cd-hit Vcs-Git: https://salsa.debian.org/med-team/cd-hit.git Testsuite: autopkgtest Build-Depends: debhelper (>= 12~), help2man, zlib1g-dev Package-List: cd-hit deb science optional arch=any Checksums-Sha1: 12c401562cd506296ccafa301e1fd8a29b210470 945639 cd-hit_4.8.1.orig.tar.gz 66597199be81461d36b2435d62c4ad8300b89329 7712 cd-hit_4.8.1-2.debian.tar.xz Checksums-Sha256: f8bc3cdd7aebb432fcd35eed0093e7a6413f1e36bbd2a837ebc06e57cdb20b70 945639 cd-hit_4.8.1.orig.tar.gz 0902bb47140f3deba732ee7c99cb285ec9a84d24b552370473cdf4f3c801c449 7712 cd-hit_4.8.1-2.debian.tar.xz Files: b997bcc5a07703ca9bd3f84818114c37 945639 cd-hit_4.8.1.orig.tar.gz 6b16f405b0af52f6f7871ae2e034183a 7712 cd-hit_4.8.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl006w8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEkKQ//dnY+Yb/2BiD9dJ5v/b6sR5YI5rp1UzYn MN8pyyH0+lJPszk9v91HPjSiMcjHRZBCtah2PUZSyuJZhf6Bqd/HK9KS9XYMy6GC zBDbNQY5XMDLyeCsWDG1p5W2xCEsmrabB4Nsk3KsLR6fMuTuDtJTbZsD4EdJoz3h ukkVLeZ0t9bKMssFtYfBUUNbIQFHCRJKfxzmKEASo7eqanVQvetcpQZsv3QsfNZa 2ggzRmcQKTXt7qJMYstEMfRdtQyWv02AP182dvKrGeJ5u/V9RNm4ucgvYZ1g3EdO k0xzQ7oiVPexiAvQYh4horQcPGlhoCCzf/l9qf3IOTPdcY+4gsKCN+rVr8SGgpRJ l7UI9JbaueeRp7u6bszMi6gypnwsoSfaYXY0KpVEWG/liA46pDQfCdqA5SmmKCVS 5T2YHx1nFzNjJtuU0H+4FfFUZHtvhCMIAkz5vRtv88SgXFTkb4+x32DiVXSoe7dE u20sF6FnxrGSasRT+pRON12xn5uj/vhPTZHy38ncv/WRTZVxOge4scfgCgwxbhPV SNWsEUIkZZTTVY6OA8BW8gGwNHWqYedqZjyhzrhfmhR4Q3kuWn7evGh07mBjtCSH kpDNTnnAG2o10lv3y65OEu84IFNrxJWFDaMA8kHaAIi1sDe39pQcEH/t526nF8rO GTPKA76vzVk= =ybOa -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Jul 21 22:45:35 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cd-hit_4.8.1-2.dsc dpkg-source: info: extracting cd-hit in /<> dpkg-source: info: unpacking cd-hit_4.8.1.orig.tar.gz dpkg-source: info: unpacking cd-hit_4.8.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_help2man.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-efa1189b-7f4b-4791-b228-d481c849069f SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package cd-hit dpkg-buildpackage: info: source version 4.8.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f *.o cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454 make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- openmp=yes CC='$(CXX)' make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=powerpc64le-linux-gnu-pkg-config CXX=powerpc64le-linux-gnu-g\+\+ CC=powerpc64le-linux-gnu-gcc openmp=yes CC=\$\(CXX\) make[2]: Entering directory '/<>' powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-common.c++ -c cdhit-common.c++:322:16: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 322 | strcpy( date, __DATE__ ); | ^~~~~~~~ cdhit-common.c++:326:66: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 326 | printf( "Program: CD-HIT, V" CDHIT_VERSION WITH_OPENMP ", %s, " __TIME__ "\n", date ); | ^~~~~~~~ In file included from cdhit-common.c++:28: In member function ‘void NVector::Resize(int, const TYPE&) [with TYPE = long int]’, inlined from ‘NVector::NVector(int, const TYPE&) [with TYPE = long int]’ at cdhit-common.h:119:4, inlined from ‘int local_band_align(char*, char*, int, int, ScoreMatrix&, int&, int&, int&, float&, int*, int, int, int, WorkingBuffer&)’ at cdhit-common.c++:815:36: cdhit-common.h:144:27: warning: argument 1 range [18446744056529682448, 18446744073709551608] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 144 | items = (TYPE*)realloc( items, capacity*sizeof(TYPE) ); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdhit-common.h: In function ‘int local_band_align(char*, char*, int, int, ScoreMatrix&, int&, int&, int&, float&, int*, int, int, int, WorkingBuffer&)’: cdhit-common.h:144:27: note: in a call to built-in allocation function ‘void* __builtin_malloc(long unsigned int)’ powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-utility.c++ -c cdhit-utility.c++:9:79: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 9 | char cd_hit_ver[] = "\t\t====== CD-HIT version " CDHIT_VERSION " (built on " __DATE__ ") ======"; | ^~~~~~~~ powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit.c++ -c powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-est.c++ -c powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-est.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-est powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-2d.c++ -c powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-2d.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-2d powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-est-2d.c++ -c powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-est-2d.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-est-2d powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-div.c++ -c powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-div.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-div powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-454.c++ -c powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-454.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-454 make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- PREFIX=debian/cd-hit/usr/lib/cd-hit make -j1 install DESTDIR=/<>/debian/cd-hit AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=debian/cd-hit/usr/lib/cd-hit make[2]: Entering directory '/<>' for prog in cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454; do \ install -m 0755 $prog debian/cd-hit/usr/lib/cd-hit; \ done install -m 0755 *.pl debian/cd-hit/usr/lib/cd-hit; make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/cd-hit/usr/share/man/man1/ help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='quickly group sequences' \ /<>/cd-hit > /<>/debian/cd-hit/usr/share/man/man1//cd-hit.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='quickly group sequences, optimised for 454 data' \ /<>/cd-hit-454 > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-454.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='quickly group sequences in db1 or db2 format' \ /<>/cd-hit-2d > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-2d.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='run CD-HIT algorithm on RNA/DNA sequences' \ /<>/cd-hit-est > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-est.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='run CD-HIT algorithm on RNA/DNA sequences in db1 or db2 format' \ /<>/cd-hit-est-2d > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-est-2d.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='divide a big clustering job into pieces to run cd-hit-2d or cd-hit-est-2d jobs' \ /<>/cd-hit-2d-para.pl > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-2d-para.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs' \ /<>/cd-hit-para.pl > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-para.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='divide a FASTA file into pieces' \ /<>/cd-hit-div.pl > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-div.1 # psi-cd-hit.pl is throwing some errors which are fixed using sed # ... at least in versions <= 4.6.4 - now help2man does not work at all #help2man --no-info --no-discard-stderr --version-string='4.8.1' \ # --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities' \ # /<>/psi-cd-hit.pl | \ # sed -e '/^Name "main::.*" used only once:/d' \ # > /<>/debian/cd-hit/usr/share/man/man1//psi-cd-hit.1 # help2man does not work at all since version 4.6.4 #help2man --no-info --no-discard-stderr --version-string='4.8.1' \ # --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities in db1 or db2 format' \ # /<>/psi-cd-hit-2d.pl > /<>/debian/cd-hit/usr/share/man/man1//psi-cd-hit-2d.1 # FIXME: what is the difference between psi-cd-hit-2d.pl and psi-cd-hit-2d-g1.pl ? # help2man does not work at all since version 4.6.4 #help2man --no-info --no-discard-stderr --version-string='4.8.1' \ # --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities in db1 or db2 format' \ # /<>/psi-cd-hit-2d-g1.pl > /<>/debian/cd-hit/usr/share/man/man1//psi-cd-hit-2d-g1.1 # No help output from # clstr2tree.pl # clstr_merge.pl # clstr_merge_noorder.pl # clstr_reduce.pl # clstr_renumber.pl # clstr_rev.pl # clstr_sort_by.pl # clstr_sort_prot_by # make_multi_seq # psi-cd-hit-local.pl -> even throws several "used only once: possible typo" errors make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'cd-hit' in '../cd-hit_4.8.1-2_ppc64el.deb'. dpkg-deb: building package 'cd-hit-dbgsym' in '../cd-hit-dbgsym_4.8.1-2_ppc64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../cd-hit_4.8.1-2_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-12-12T04:55:56Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ cd-hit_4.8.1-2_ppc64el.changes: ------------------------------- Format: 1.8 Date: Mon, 22 Jul 2019 00:42:22 +0200 Source: cd-hit Binary: cd-hit cd-hit-dbgsym Built-For-Profiles: cross nocheck Architecture: ppc64el Version: 4.8.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: cd-hit - suite of programs designed to quickly group sequences Closes: 932652 Changes: cd-hit (4.8.1-2) unstable; urgency=medium . [ Helmut Grohne ] * Fix FTCBFS: Makefile expects a C++ compiler in $CC. (Closes: #932652) Checksums-Sha1: ad2d9248ebd7d645794e627b99f96b6b4660733f 2006224 cd-hit-dbgsym_4.8.1-2_ppc64el.deb f6664f6db0b24d08045f6a52745ee5c42243baef 4762 cd-hit_4.8.1-2_ppc64el.buildinfo e41ea45c65e8c0ce23d0ca42e60eb39e6ecde2d9 512640 cd-hit_4.8.1-2_ppc64el.deb Checksums-Sha256: bad63d1795c84f0e384111299f863a6dd48bee444dd6dedbe939fa704455c74c 2006224 cd-hit-dbgsym_4.8.1-2_ppc64el.deb af7f7b5f7a708f52ef11ffb535f9596319fc355c1cda346fd2122420351f5c36 4762 cd-hit_4.8.1-2_ppc64el.buildinfo 8107d3ce6e7657c385a5a7d65e4ebfabe19effff07609ec815e3565975f7028a 512640 cd-hit_4.8.1-2_ppc64el.deb Files: 8ed915369e6cb63aa62eddb66779aafb 2006224 debug optional cd-hit-dbgsym_4.8.1-2_ppc64el.deb 328d9ad2d598749c0e11ef312a37eee7 4762 science optional cd-hit_4.8.1-2_ppc64el.buildinfo 425b4671ccda66b6e4d03c35ee1fa832 512640 science optional cd-hit_4.8.1-2_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: cd-hit Binary: cd-hit Architecture: ppc64el Version: 4.8.1-2 Checksums-Md5: 8ed915369e6cb63aa62eddb66779aafb 2006224 cd-hit-dbgsym_4.8.1-2_ppc64el.deb 425b4671ccda66b6e4d03c35ee1fa832 512640 cd-hit_4.8.1-2_ppc64el.deb Checksums-Sha1: ad2d9248ebd7d645794e627b99f96b6b4660733f 2006224 cd-hit-dbgsym_4.8.1-2_ppc64el.deb e41ea45c65e8c0ce23d0ca42e60eb39e6ecde2d9 512640 cd-hit_4.8.1-2_ppc64el.deb Checksums-Sha256: bad63d1795c84f0e384111299f863a6dd48bee444dd6dedbe939fa704455c74c 2006224 cd-hit-dbgsym_4.8.1-2_ppc64el.deb 8107d3ce6e7657c385a5a7d65e4ebfabe19effff07609ec815e3565975f7028a 512640 cd-hit_4.8.1-2_ppc64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 12 Dec 2019 04:55:56 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-5), binutils (= 2.33.1-5), binutils-common (= 2.33.1-5), binutils-x86-64-linux-gnu (= 2.33.1-5), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-26), cpp-9 (= 9.2.1-21), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.7.2), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.37-6), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-21), gcc (= 4:9.2.1-3.1), gcc-8 (= 8.3.0-26), gcc-8-base (= 8.3.0-26), gcc-9 (= 9.2.1-21), gcc-9-base (= 9.2.1-21), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3+b1), help2man (= 1.47.11), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libarchive-zip-perl (= 1.67-1), libasan5 (= 9.2.1-21), libatomic1 (= 9.2.1-21), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2+b1), libbinutils (= 2.33.1-5), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-6), libc-dev-bin (= 2.29-6), libc6 (= 2.29-6), libc6-dev (= 2.29-6), libcap-ng0 (= 0.7.9-2.1+b1), libcc1-0 (= 9.2.1-21), libcroco3 (= 0.6.13-1), libcrypt1 (= 1:4.4.10-5), libcrypt1-dev (= 1:4.4.10-5), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.250), libdebhelper-perl (= 12.7.2), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.6.3-1), libgcc-8-dev (= 8.3.0-26), libgcc-9-dev (= 9.2.1-21), libgcc1 (= 1:9.2.1-21), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.62.3-2), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.2.1-21), libgpg-error0 (= 1.36-7), libicu63 (= 63.2-2), libisl22 (= 0.22-2), libitm1 (= 9.2.1-21), liblocale-gettext-perl (= 1.07-4), liblsan0 (= 9.2.1-21), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-6), libmagic1 (= 1:5.37-6), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-26), libncursesw6 (= 6.1+20191019-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.1-2), libquadmath0 (= 9.2.1-21), libseccomp2 (= 2.4.2-2), libselinux1 (= 3.0-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.2.1-21), libstdc++6 (= 9.2.1-21), libsub-override-perl (= 0.09-2), libsystemd0 (= 244-3), libtinfo6 (= 6.1+20191019-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-21), libubsan1 (= 9.2.1-21), libuchardet0 (= 0.0.6-3), libudev1 (= 244-3), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-8), linux-libc-dev (= 5.3.15-1), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.0-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20191019-1), ncurses-bin (= 6.1+20191019-1), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-1), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1), zlib1g-dev (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1563748942" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ cd-hit-dbgsym_4.8.1-2_ppc64el.deb --------------------------------- new Debian package, version 2.0. size 2006224 bytes: control archive=856 bytes. 574 bytes, 12 lines control 724 bytes, 7 lines md5sums Package: cd-hit-dbgsym Source: cd-hit Version: 4.8.1-2 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 2218 Depends: cd-hit (= 4.8.1-2) Section: debug Priority: optional Description: debug symbols for cd-hit Build-Ids: 0fbbe641e077690193d7f5e9c75102330231c766 91e7ede9c5099a49cf7acfb93e35aaac337e484b 99c15b2c24750501edb881de02984063caf2f6b6 eba248d8be084c2c3509b6c56ed142aa08346ce2 f57e318b96c26eaced4ce59a611194359c2eccbe f7cde8ce26397d787e22d7d16862d94bdd3443d5 drwxr-xr-x root/root 0 2019-07-21 22:42 ./ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/debug/.build-id/0f/ -rw-r--r-- root/root 349584 2019-07-21 22:42 ./usr/lib/debug/.build-id/0f/bbe641e077690193d7f5e9c75102330231c766.debug drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/debug/.build-id/91/ -rw-r--r-- root/root 351960 2019-07-21 22:42 ./usr/lib/debug/.build-id/91/e7ede9c5099a49cf7acfb93e35aaac337e484b.debug drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/debug/.build-id/99/ -rw-r--r-- root/root 354744 2019-07-21 22:42 ./usr/lib/debug/.build-id/99/c15b2c24750501edb881de02984063caf2f6b6.debug drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/debug/.build-id/eb/ -rw-r--r-- root/root 358472 2019-07-21 22:42 ./usr/lib/debug/.build-id/eb/a248d8be084c2c3509b6c56ed142aa08346ce2.debug drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/debug/.build-id/f5/ -rw-r--r-- root/root 348040 2019-07-21 22:42 ./usr/lib/debug/.build-id/f5/7e318b96c26eaced4ce59a611194359c2eccbe.debug drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/debug/.build-id/f7/ -rw-r--r-- root/root 348304 2019-07-21 22:42 ./usr/lib/debug/.build-id/f7/cde8ce26397d787e22d7d16862d94bdd3443d5.debug drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/ -rw-r--r-- root/root 138568 2019-07-21 22:42 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/cd-hit.debug drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/share/ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/share/doc/cd-hit-dbgsym -> cd-hit cd-hit_4.8.1-2_ppc64el.deb -------------------------- new Debian package, version 2.0. size 512640 bytes: control archive=2148 bytes. 920 bytes, 17 lines control 3454 bytes, 52 lines md5sums Package: cd-hit Version: 4.8.1-2 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 1806 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libgomp1 (>= 6), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4), perl:any Section: science Priority: optional Homepage: http://weizhong-lab.ucsd.edu/cd-hit/ Description: suite of programs designed to quickly group sequences cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information. drwxr-xr-x root/root 0 2019-07-21 22:42 ./ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/bin/ lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cd-hit -> ../lib/cd-hit/cd-hit lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cd-hit-2d -> ../lib/cd-hit/cd-hit-2d lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cd-hit-2d-para -> ../lib/cd-hit/cd-hit-2d-para.pl lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cd-hit-454 -> ../lib/cd-hit/cd-hit-454 lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cd-hit-div -> ../lib/cd-hit/cd-hit-div.pl lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cd-hit-est -> ../lib/cd-hit/cd-hit-est lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cd-hit-est-2d -> ../lib/cd-hit/cd-hit-est-2d lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cd-hit-para -> ../lib/cd-hit/cd-hit-para.pl lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cdhit -> cd-hit lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cdhit-2d -> cd-hit-2d lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cdhit-454 -> cd-hit-454 lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cdhit-est -> cd-hit-est lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/cdhit-est-2d -> cd-hit-est-2d lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/clstr2tree -> ../lib/cd-hit/clstr2tree.pl lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/clstr_merge -> ../lib/cd-hit/clstr_merge.pl lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/clstr_merge_noorder -> ../lib/cd-hit/clstr_merge_noorder.pl lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/clstr_reduce -> ../lib/cd-hit/clstr_reduce.pl lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/clstr_renumber -> ../lib/cd-hit/clstr_renumber.pl lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/clstr_rev -> ../lib/cd-hit/clstr_rev.pl lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/clstr_sort_by -> ../lib/cd-hit/clstr_sort_by.pl lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/clstr_sort_prot_by -> ../lib/cd-hit/clstr_sort_prot_by.pl lrwxrwxrwx root/root 0 2019-07-21 22:42 ./usr/bin/make_multi_seq -> ../lib/cd-hit/make_multi_seq.pl drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/lib/cd-hit/ -rwxr-xr-x root/root 3152 2019-07-21 22:42 ./usr/lib/cd-hit/FET.pl -rwxr-xr-x root/root 212560 2019-07-21 22:42 ./usr/lib/cd-hit/cd-hit -rwxr-xr-x root/root 212560 2019-07-21 22:42 ./usr/lib/cd-hit/cd-hit-2d -rwxr-xr-x root/root 12596 2019-07-21 22:42 ./usr/lib/cd-hit/cd-hit-2d-para.pl -rwxr-xr-x root/root 212648 2019-07-21 22:42 ./usr/lib/cd-hit/cd-hit-454 -rwxr-xr-x root/root 2126 2019-07-21 22:42 ./usr/lib/cd-hit/cd-hit-clstr_2_blm8.pl -rwxr-xr-x root/root 212560 2019-07-21 22:42 ./usr/lib/cd-hit/cd-hit-div -rwxr-xr-x root/root 992 2019-07-21 22:42 ./usr/lib/cd-hit/cd-hit-div.pl -rwxr-xr-x root/root 212560 2019-07-21 22:42 ./usr/lib/cd-hit/cd-hit-est -rwxr-xr-x root/root 212560 2019-07-21 22:42 ./usr/lib/cd-hit/cd-hit-est-2d -rwxr-xr-x root/root 11859 2019-07-21 22:42 ./usr/lib/cd-hit/cd-hit-para.pl -rwxr-xr-x root/root 952 2019-07-21 22:42 ./usr/lib/cd-hit/clstr2tree.pl -rwxr-xr-x root/root 1209 2019-07-21 22:42 ./usr/lib/cd-hit/clstr2txt.pl -rwxr-xr-x root/root 4503 2019-07-21 22:42 ./usr/lib/cd-hit/clstr2xml.pl -rwxr-xr-x root/root 464 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_cut.pl -rwxr-xr-x root/root 3258 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_list.pl -rwxr-xr-x root/root 1129 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_list_sort.pl -rwxr-xr-x root/root 3199 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_merge.pl -rwxr-xr-x root/root 2162 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_merge_noorder.pl -rwxr-xr-x root/root 3465 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_quality_eval.pl -rwxr-xr-x root/root 2335 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_quality_eval_by_link.pl -rwxr-xr-x root/root 1000 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_reduce.pl -rwxr-xr-x root/root 196 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_renumber.pl -rwxr-xr-x root/root 554 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_rep.pl -rwxr-xr-x root/root 1160 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_reps_faa_rev.pl -rwxr-xr-x root/root 1620 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_rev.pl -rwxr-xr-x root/root 387 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_select.pl -rwxr-xr-x root/root 555 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_select_rep.pl -rwxr-xr-x root/root 779 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_size_histogram.pl -rwxr-xr-x root/root 725 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_size_stat.pl -rwxr-xr-x root/root 806 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_sort_by.pl -rwxr-xr-x root/root 1291 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_sort_prot_by.pl -rwxr-xr-x root/root 2928 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_sql_tbl.pl -rwxr-xr-x root/root 1103 2019-07-21 22:42 ./usr/lib/cd-hit/clstr_sql_tbl_sort.pl -rwxr-xr-x root/root 1670 2019-07-21 22:42 ./usr/lib/cd-hit/make_multi_seq.pl -rwxr-xr-x root/root 3668 2019-07-21 22:42 ./usr/lib/cd-hit/plot_2d.pl -rwxr-xr-x root/root 2190 2019-07-21 22:42 ./usr/lib/cd-hit/plot_len1.pl drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/share/ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/share/doc-base/ -rw-r--r-- root/root 753 2019-07-21 22:42 ./usr/share/doc-base/cd-hit drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/share/doc/cd-hit/ -rw-r--r-- root/root 771 2019-07-21 22:42 ./usr/share/doc/cd-hit/README.Debian -rw-r--r-- root/root 421458 2019-02-28 20:13 ./usr/share/doc/cd-hit/cdhit-user-guide.pdf -rw-r--r-- root/root 2213 2019-07-21 22:42 ./usr/share/doc/cd-hit/changelog.Debian.gz -rw-r--r-- root/root 962 2019-02-28 20:13 ./usr/share/doc/cd-hit/changelog.gz -rw-r--r-- root/root 1151 2019-07-21 22:42 ./usr/share/doc/cd-hit/copyright drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/share/doc/cd-hit/examples/ -rw-r--r-- root/root 2269 2019-07-21 22:42 ./usr/share/doc/cd-hit/examples/example.fa drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/share/man/ drwxr-xr-x root/root 0 2019-07-21 22:42 ./usr/share/man/man1/ -rw-r--r-- root/root 1147 2019-07-21 22:42 ./usr/share/man/man1/cd-hit-2d-para.1.gz -rw-r--r-- root/root 265 2019-07-21 22:42 ./usr/share/man/man1/cd-hit-2d.1.gz -rw-r--r-- root/root 268 2019-07-21 22:42 ./usr/share/man/man1/cd-hit-454.1.gz -rw-r--r-- root/root 229 2019-07-21 22:42 ./usr/share/man/man1/cd-hit-div.1.gz -rw-r--r-- root/root 284 2019-07-21 22:42 ./usr/share/man/man1/cd-hit-est-2d.1.gz -rw-r--r-- root/root 264 2019-07-21 22:42 ./usr/share/man/man1/cd-hit-est.1.gz -rw-r--r-- root/root 1110 2019-07-21 22:42 ./usr/share/man/man1/cd-hit-para.1.gz -rw-r--r-- root/root 245 2019-07-21 22:42 ./usr/share/man/man1/cd-hit.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [545 B] Get:5 copy:/<>/apt_archive ./ Packages [636 B] Fetched 2144 B in 0s (100 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libfreezethaw-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:ppc64el t1utils 0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded. 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[21.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.006000-1 [273 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.80+repack-2+b1 [34.8 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.41.0 [1298 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8904 kB in 0s (33.8 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21260 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.8_all.deb ... Unpacking netbase (5.8) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.29-6) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 27140 Build-Time: 33 Distribution: unstable Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 17 Job: cd-hit_4.8.1-2 Lintian: pass Machine Architecture: amd64 Package: cd-hit Package-Time: 63 Source-Version: 4.8.1-2 Space: 27140 Status: successful Version: 4.8.1-2 -------------------------------------------------------------------------------- Finished at 2019-12-12T04:55:56Z Build needed 00:01:03, 27140k disk space