sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | centrifuge 1.0.3-11 (armel) Sat, 27 May 2023 08:19:35 +0000 | +==============================================================================+ Package: centrifuge Version: 1.0.3-11 Source Version: 1.0.3-11 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-043a216d-5f2e-4c85-aa4a-ff2bba684f9c' with '<>' I: NOTICE: Log filtering will replace 'build/centrifuge-WpRY8j/resolver-d2mC7N' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [195 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-05-27-0205.35-F-2023-05-27-0205.35.pdiff [10.8 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-05-27-0205.35-F-2023-05-27-0205.35.pdiff [10.8 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-05-27-0205.35-F-2023-05-27-0205.35.pdiff [13.3 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-05-27-0205.35-F-2023-05-27-0205.35.pdiff [13.3 kB] Get:6 http://localhost:3142/debian sid/main armel Packages [9003 kB] Fetched 9350 kB in 2s (5034 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'centrifuge' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/centrifuge.git Please use: git clone https://salsa.debian.org/med-team/centrifuge.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 719 kB of source archives. Get:1 http://localhost:3142/debian sid/main centrifuge 1.0.3-11 (dsc) [2037 B] Get:2 http://localhost:3142/debian sid/main centrifuge 1.0.3-11 (tar) [701 kB] Get:3 http://localhost:3142/debian sid/main centrifuge 1.0.3-11 (diff) [15.2 kB] Fetched 719 kB in 0s (14.0 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/centrifuge-WpRY8j/centrifuge-1.0.3' with '<>' I: NOTICE: Log filtering will replace 'build/centrifuge-WpRY8j' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, jellyfish, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, jellyfish, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [429 B] Get:5 copy:/<>/apt_archive ./ Packages [517 B] Fetched 1903 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils cpp-12-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-python dh-strip-nondeterminism dpkg-cross dwz file g++-12-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-base:armel gcc-12-arm-linux-gnueabi gcc-12-arm-linux-gnueabi-base gcc-12-base:armel gcc-12-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian jellyfish:armel libarchive-zip-perl libasan6:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1:armel libbz2-1.0:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libcurl3-gnutls:armel libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:armel libelf1 libexpat1 libffi8:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel libgcc-12-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libhogweed6:armel libhts3:armel libhtscodecs2:armel libicu72 libidn2-0:armel libio-string-perl libjellyfish-2.0-2:armel libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.5-0:armel liblocale-gettext-perl liblzma5:armel libmagic-mgc libmagic1 libncursesw6 libnettle8:armel libnghttp2-14:armel libnsl-dev:armel libnsl2:armel libp11-kit0:armel libpipeline1 libpsl5:armel libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libsqlite3-0 libssh2-1:armel libssl3:armel libstdc++-11-dev:armel libstdc++-12-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtasn1-6:armel libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring2:armel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:armel linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db media-types po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-minimal readline-common sensible-utils ucf zlib1g:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make flit python3-build python3-tomli python3-installer binutils-multiarch gcc-12-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel manpages-dev:armel gnutls-bin:armel krb5-doc:armel krb5-user:armel libstdc++-11-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx ca-certificates:armel libarchive-cpio-perl krb5-locales:armel libldap-common:armel libgpm2 publicsuffix:armel libsasl2-modules:armel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils cpp-12-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-python dh-strip-nondeterminism dpkg-cross dwz file g++-12-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-base:armel gcc-12-arm-linux-gnueabi gcc-12-arm-linux-gnueabi-base gcc-12-base:armel gcc-12-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian jellyfish:armel libarchive-zip-perl libasan6:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1:armel libbz2-1.0:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libcurl3-gnutls:armel libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:armel libelf1 libexpat1 libffi8:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel libgcc-12-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libhogweed6:armel libhts3:armel libhtscodecs2:armel libicu72 libidn2-0:armel libio-string-perl libjellyfish-2.0-2:armel libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.5-0:armel liblocale-gettext-perl liblzma5:armel libmagic-mgc libmagic1 libncursesw6 libnettle8:armel libnghttp2-14:armel libnsl-dev:armel libnsl2:armel libp11-kit0:armel libpipeline1 libpsl5:armel libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libsqlite3-0 libssh2-1:armel libssl3:armel libstdc++-11-dev:armel libstdc++-12-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtasn1-6:armel libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring2:armel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:armel linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db media-types po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-minimal readline-common sbuild-build-depends-main-dummy:armel sensible-utils ucf zlib1g:armel 0 upgraded, 138 newly installed, 0 to remove and 0 not upgraded. Need to get 96.3 MB of archives. After this operation, 366 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get:3 http://localhost:3142/debian sid/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get:4 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:5 http://localhost:3142/debian sid/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get:6 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 media-types all 10.0.0 [26.1 kB] Get:8 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:9 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:10 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:11 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:12 http://localhost:3142/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get:13 http://localhost:3142/debian sid/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get:14 http://localhost:3142/debian sid/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:15 http://localhost:3142/debian sid/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:16 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:17 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get:18 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get:19 http://localhost:3142/debian sid/main amd64 file amd64 1:5.44-3 [42.5 kB] Get:20 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-12 [160 kB] Get:21 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:22 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get:23 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get:24 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:25 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get:26 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:27 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:28 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:29 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:30 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:31 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-12 [495 kB] Get:32 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabi amd64 2.40-2 [3232 kB] Get:33 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabi-base amd64 12.2.0-14cross1 [37.7 kB] Get:34 http://localhost:3142/debian sid/main amd64 cpp-12-arm-linux-gnueabi amd64 12.2.0-14cross1 [8665 kB] Get:35 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabi amd64 4:12.2.0-3 [3980 B] Get:36 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:37 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-14cross1 [33.2 kB] Get:38 http://localhost:3142/debian sid/main amd64 libc6-armel-cross all 2.36-8cross1 [883 kB] Get:39 http://localhost:3142/debian sid/main amd64 libgcc-s1-armel-cross all 12.2.0-14cross1 [38.4 kB] Get:40 http://localhost:3142/debian sid/main amd64 libgomp1-armel-cross all 12.2.0-14cross1 [96.6 kB] Get:41 http://localhost:3142/debian sid/main amd64 libatomic1-armel-cross all 12.2.0-14cross1 [8856 B] Get:42 http://localhost:3142/debian sid/main amd64 libasan8-armel-cross all 12.2.0-14cross1 [2093 kB] Get:43 http://localhost:3142/debian sid/main amd64 libstdc++6-armel-cross all 12.2.0-14cross1 [464 kB] Get:44 http://localhost:3142/debian sid/main amd64 libubsan1-armel-cross all 12.2.0-14cross1 [862 kB] Get:45 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-armel-cross all 12.2.0-14cross1 [735 kB] Get:46 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabi amd64 12.2.0-14cross1 [17.0 MB] Get:47 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabi amd64 4:12.2.0-3 [1472 B] Get:48 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armel-cross all 6.1.4-1cross1 [1801 kB] Get:49 http://localhost:3142/debian sid/main amd64 libc6-dev-armel-cross all 2.36-8cross1 [1285 kB] Get:50 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-armel-cross all 12.2.0-14cross1 [2033 kB] Get:51 http://localhost:3142/debian sid/main amd64 g++-12-arm-linux-gnueabi amd64 12.2.0-14cross1 [9594 kB] Get:52 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabi amd64 4:12.2.0-3 [1176 B] Get:53 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:54 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:55 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:56 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get:57 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:58 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:59 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:60 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:61 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:62 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:63 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:64 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:65 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:66 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:67 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:68 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armel all 12.9 [6704 B] Get:69 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:70 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-5 [517 kB] Get:71 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:72 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:73 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:74 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:75 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:76 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get:77 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:78 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-12 [1300 kB] Get:79 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:80 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:81 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.4 [942 kB] Get:82 http://localhost:3142/debian sid/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:83 http://localhost:3142/debian sid/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:84 http://localhost:3142/debian sid/main amd64 dh-python all 5.20230130 [104 kB] Get:85 http://localhost:3142/debian sid/main armel gcc-11-base armel 11.3.0-15 [39.1 kB] Get:86 http://localhost:3142/debian sid/main armel gcc-12-base armel 12.2.0-14 [37.5 kB] Get:87 http://localhost:3142/debian sid/main armel libgcc-s1 armel 12.2.0-14 [38.4 kB] Get:88 http://localhost:3142/debian sid/main armel libc6 armel 2.36-9 [2142 kB] Get:89 http://localhost:3142/debian sid/main armel libbz2-1.0 armel 1.0.8-5+b1 [45.4 kB] Get:90 http://localhost:3142/debian sid/main armel libbrotli1 armel 1.0.9-2+b6 [282 kB] Get:91 http://localhost:3142/debian sid/main armel libgmp10 armel 2:6.2.1+dfsg1-1.1 [508 kB] Get:92 http://localhost:3142/debian sid/main armel libnettle8 armel 3.8.1-2 [294 kB] Get:93 http://localhost:3142/debian sid/main armel libhogweed6 armel 3.8.1-2 [315 kB] Get:94 http://localhost:3142/debian sid/main armel libunistring2 armel 1.0-2 [398 kB] Get:95 http://localhost:3142/debian sid/main armel libidn2-0 armel 2.3.3-1+b1 [120 kB] Get:96 http://localhost:3142/debian sid/main armel libffi8 armel 3.4.4-1 [19.3 kB] Get:97 http://localhost:3142/debian sid/main armel libp11-kit0 armel 0.24.1-2 [323 kB] Get:98 http://localhost:3142/debian sid/main armel libtasn1-6 armel 4.19.0-2 [50.9 kB] Get:99 http://localhost:3142/debian sid/main armel libgnutls30 armel 3.7.9-2 [1309 kB] Get:100 http://localhost:3142/debian sid/main armel libcom-err2 armel 1.47.0-2 [19.1 kB] Get:101 http://localhost:3142/debian sid/main armel libkrb5support0 armel 1.20.1-2 [29.2 kB] Get:102 http://localhost:3142/debian sid/main armel libk5crypto3 armel 1.20.1-2 [74.1 kB] Get:103 http://localhost:3142/debian sid/main armel libkeyutils1 armel 1.6.3-2 [7864 B] Get:104 http://localhost:3142/debian sid/main armel libatomic1 armel 12.2.0-14 [9160 B] Get:105 http://localhost:3142/debian sid/main armel libssl3 armel 3.0.8-1 [1624 kB] Get:106 http://localhost:3142/debian sid/main armel libkrb5-3 armel 1.20.1-2 [284 kB] Get:107 http://localhost:3142/debian sid/main armel libgssapi-krb5-2 armel 1.20.1-2 [110 kB] Get:108 http://localhost:3142/debian sid/main armel libdb5.3 armel 5.3.28+dfsg2-1 [575 kB] Get:109 http://localhost:3142/debian sid/main armel libsasl2-modules-db armel 2.1.28+dfsg-11 [18.8 kB] Get:110 http://localhost:3142/debian sid/main armel libsasl2-2 armel 2.1.28+dfsg-11 [51.4 kB] Get:111 http://localhost:3142/debian sid/main armel libldap-2.5-0 armel 2.5.13+dfsg-5 [156 kB] Get:112 http://localhost:3142/debian sid/main armel libnghttp2-14 armel 1.53.0-1 [61.3 kB] Get:113 http://localhost:3142/debian sid/main armel libpsl5 armel 0.21.2-1 [57.5 kB] Get:114 http://localhost:3142/debian sid/main armel zlib1g armel 1:1.2.13.dfsg-1 [73.6 kB] Get:115 http://localhost:3142/debian sid/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-2+b2 [55.1 kB] Get:116 http://localhost:3142/debian sid/main armel libssh2-1 armel 1.10.0-3+b1 [161 kB] Get:117 http://localhost:3142/debian sid/main armel libzstd1 armel 1.5.4+dfsg2-5 [251 kB] Get:118 http://localhost:3142/debian sid/main armel libcurl3-gnutls armel 7.88.1-10 [339 kB] Get:119 http://localhost:3142/debian sid/main armel libdeflate0 armel 1.14-1 [45.5 kB] Get:120 http://localhost:3142/debian sid/main armel libhtscodecs2 armel 1.3.0-4 [60.7 kB] Get:121 http://localhost:3142/debian sid/main armel liblzma5 armel 5.4.1-0.2 [193 kB] Get:122 http://localhost:3142/debian sid/main armel libhts3 armel 1.16+ds-3 [372 kB] Get:123 http://localhost:3142/debian sid/main armel libstdc++6 armel 12.2.0-14 [506 kB] Get:124 http://localhost:3142/debian sid/main armel libjellyfish-2.0-2 armel 2.3.0-15+b3 [54.3 kB] Get:125 http://localhost:3142/debian sid/main armel jellyfish armel 2.3.0-15+b3 [652 kB] Get:126 http://localhost:3142/debian sid/main armel libasan6 armel 11.3.0-15 [1944 kB] Get:127 http://localhost:3142/debian sid/main armel linux-libc-dev armel 6.1.27-1 [1737 kB] Get:128 http://localhost:3142/debian sid/main armel libcrypt1 armel 1:4.4.33-2 [95.9 kB] Get:129 http://localhost:3142/debian sid/main armel libcrypt-dev armel 1:4.4.33-2 [126 kB] Get:130 http://localhost:3142/debian sid/main armel libtirpc3 armel 1.3.3+ds-1 [72.0 kB] Get:131 http://localhost:3142/debian sid/main armel libnsl2 armel 1.3.0-2 [33.0 kB] Get:132 http://localhost:3142/debian sid/main armel libtirpc-dev armel 1.3.3+ds-1 [182 kB] Get:133 http://localhost:3142/debian sid/main armel libnsl-dev armel 1.3.0-2 [61.7 kB] Get:134 http://localhost:3142/debian sid/main armel libc6-dev armel 2.36-9 [1289 kB] Get:135 http://localhost:3142/debian sid/main armel libgomp1 armel 12.2.0-14 [99.1 kB] Get:136 http://localhost:3142/debian sid/main armel libubsan1 armel 12.2.0-14 [863 kB] Get:137 http://localhost:3142/debian sid/main armel libgcc-11-dev armel 11.3.0-15 [706 kB] Get:138 http://localhost:3142/debian sid/main armel libstdc++-11-dev armel 11.3.0-15 [1979 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.3 MB in 1s (182 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 15274 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... 15604 files and directories currently installed.) 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Preparing to unpack .../093-libdb5.3_5.3.28+dfsg2-1_armel.deb ... Unpacking libdb5.3:armel (5.3.28+dfsg2-1) ... Selecting previously unselected package libsasl2-modules-db:armel. Preparing to unpack .../094-libsasl2-modules-db_2.1.28+dfsg-11_armel.deb ... Unpacking libsasl2-modules-db:armel (2.1.28+dfsg-11) ... Selecting previously unselected package libsasl2-2:armel. Preparing to unpack .../095-libsasl2-2_2.1.28+dfsg-11_armel.deb ... Unpacking libsasl2-2:armel (2.1.28+dfsg-11) ... Selecting previously unselected package libldap-2.5-0:armel. Preparing to unpack .../096-libldap-2.5-0_2.5.13+dfsg-5_armel.deb ... Unpacking libldap-2.5-0:armel (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:armel. Preparing to unpack .../097-libnghttp2-14_1.53.0-1_armel.deb ... Unpacking libnghttp2-14:armel (1.53.0-1) ... Selecting previously unselected package libpsl5:armel. Preparing to unpack .../098-libpsl5_0.21.2-1_armel.deb ... Unpacking libpsl5:armel (0.21.2-1) ... Selecting previously unselected package zlib1g:armel. Preparing to unpack .../099-zlib1g_1%3a1.2.13.dfsg-1_armel.deb ... Unpacking zlib1g:armel (1:1.2.13.dfsg-1) ... Selecting previously unselected package librtmp1:armel. Preparing to unpack .../100-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armel.deb ... Unpacking librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armel. Preparing to unpack .../101-libssh2-1_1.10.0-3+b1_armel.deb ... Unpacking libssh2-1:armel (1.10.0-3+b1) ... Selecting previously unselected package libzstd1:armel. Preparing to unpack .../102-libzstd1_1.5.4+dfsg2-5_armel.deb ... Unpacking libzstd1:armel (1.5.4+dfsg2-5) ... Selecting previously unselected package libcurl3-gnutls:armel. Preparing to unpack .../103-libcurl3-gnutls_7.88.1-10_armel.deb ... Unpacking libcurl3-gnutls:armel (7.88.1-10) ... Selecting previously unselected package libdeflate0:armel. Preparing to unpack .../104-libdeflate0_1.14-1_armel.deb ... Unpacking libdeflate0:armel (1.14-1) ... Selecting previously unselected package libhtscodecs2:armel. Preparing to unpack .../105-libhtscodecs2_1.3.0-4_armel.deb ... Unpacking libhtscodecs2:armel (1.3.0-4) ... Selecting previously unselected package liblzma5:armel. Preparing to unpack .../106-liblzma5_5.4.1-0.2_armel.deb ... Unpacking liblzma5:armel (5.4.1-0.2) ... Selecting previously unselected package libhts3:armel. Preparing to unpack .../107-libhts3_1.16+ds-3_armel.deb ... Unpacking libhts3:armel (1.16+ds-3) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../108-libstdc++6_12.2.0-14_armel.deb ... Unpacking libstdc++6:armel (12.2.0-14) ... Selecting previously unselected package libjellyfish-2.0-2:armel. Preparing to unpack .../109-libjellyfish-2.0-2_2.3.0-15+b3_armel.deb ... Unpacking libjellyfish-2.0-2:armel (2.3.0-15+b3) ... Selecting previously unselected package jellyfish:armel. Preparing to unpack .../110-jellyfish_2.3.0-15+b3_armel.deb ... Unpacking jellyfish:armel (2.3.0-15+b3) ... Selecting previously unselected package libasan6:armel. Preparing to unpack .../111-libasan6_11.3.0-15_armel.deb ... Unpacking libasan6:armel (11.3.0-15) ... Selecting previously unselected package linux-libc-dev:armel. Preparing to unpack .../112-linux-libc-dev_6.1.27-1_armel.deb ... Unpacking linux-libc-dev:armel (6.1.27-1) ... Selecting previously unselected package libcrypt1:armel. Preparing to unpack .../113-libcrypt1_1%3a4.4.33-2_armel.deb ... Unpacking libcrypt1:armel (1:4.4.33-2) ... Selecting previously unselected package libcrypt-dev:armel. Preparing to unpack .../114-libcrypt-dev_1%3a4.4.33-2_armel.deb ... Unpacking libcrypt-dev:armel (1:4.4.33-2) ... Selecting previously unselected package libtirpc3:armel. Preparing to unpack .../115-libtirpc3_1.3.3+ds-1_armel.deb ... Unpacking libtirpc3:armel (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:armel. Preparing to unpack .../116-libnsl2_1.3.0-2_armel.deb ... Unpacking libnsl2:armel (1.3.0-2) ... Selecting previously unselected package libtirpc-dev:armel. Preparing to unpack .../117-libtirpc-dev_1.3.3+ds-1_armel.deb ... Unpacking libtirpc-dev:armel (1.3.3+ds-1) ... Selecting previously unselected package libnsl-dev:armel. Preparing to unpack .../118-libnsl-dev_1.3.0-2_armel.deb ... Unpacking libnsl-dev:armel (1.3.0-2) ... Selecting previously unselected package libc6-dev:armel. Preparing to unpack .../119-libc6-dev_2.36-9_armel.deb ... Unpacking libc6-dev:armel (2.36-9) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../120-libgomp1_12.2.0-14_armel.deb ... Unpacking libgomp1:armel (12.2.0-14) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../121-libubsan1_12.2.0-14_armel.deb ... Unpacking libubsan1:armel (12.2.0-14) ... Selecting previously unselected package libgcc-11-dev:armel. Preparing to unpack .../122-libgcc-11-dev_11.3.0-15_armel.deb ... Unpacking libgcc-11-dev:armel (11.3.0-15) ... Selecting previously unselected package libstdc++-11-dev:armel. Preparing to unpack .../123-libstdc++-11-dev_11.3.0-15_armel.deb ... Unpacking libstdc++-11-dev:armel (11.3.0-15) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../124-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up gcc-11-base:armel (11.3.0-15) ... Setting up libfile-which-perl (1.27-2) ... Setting up binutils-arm-linux-gnueabi (2.40-2) ... Setting up libicu72:amd64 (72.1-3) ... Setting up gcc-12-cross-base (12.2.0-14cross1) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up linux-libc-dev:armel (6.1.27-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libyaml-perl (1.30-2) ... Setting up linux-libc-dev-armel-cross (6.1.4-1cross1) ... Setting up gcc-12-base:armel (12.2.0-14) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up autopoint (0.21-12) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up autoconf (2.71-3) ... Setting up libc6-armel-cross (2.36-8cross1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up gcc-12-arm-linux-gnueabi-base:amd64 (12.2.0-14cross1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libc6-dev-armel-cross (2.36-8cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up cpp-12-arm-linux-gnueabi (12.2.0-14cross1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libgomp1-armel-cross (12.2.0-14cross1) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libgcc-s1-armel-cross (12.2.0-14cross1) ... Setting up libstdc++6-armel-cross (12.2.0-14cross1) ... Setting up libatomic1-armel-cross (12.2.0-14cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up cpp-arm-linux-gnueabi (4:12.2.0-3) ... Setting up libubsan1-armel-cross (12.2.0-14cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libasan8-armel-cross (12.2.0-14cross1) ... Setting up libgcc-12-dev-armel-cross (12.2.0-14cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-12-arm-linux-gnueabi (12.2.0-14cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-arm-linux-gnueabi (4:12.2.0-3) ... Setting up libstdc++-12-dev-armel-cross (12.2.0-14cross1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-12-arm-linux-gnueabi (12.2.0-14cross1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-arm-linux-gnueabi (4:12.2.0-3) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-armel (12.9) ... Setting up libgcc-s1:armel (12.2.0-14) ... Setting up libc6:armel (2.36-9) ... Setting up libffi8:armel (3.4.4-1) ... Setting up libtasn1-6:armel (4.19.0-2) ... Setting up libbz2-1.0:armel (1.0.8-5+b1) ... Setting up libdb5.3:armel (5.3.28+dfsg2-1) ... Setting up libstdc++6:armel (12.2.0-14) ... Setting up libhtscodecs2:armel (1.3.0-4) ... Setting up libzstd1:armel (1.5.4+dfsg2-5) ... Setting up libkeyutils1:armel (1.6.3-2) ... Setting up liblzma5:armel (5.4.1-0.2) ... Setting up libbrotli1:armel (1.0.9-2+b6) ... Setting up libnghttp2-14:armel (1.53.0-1) ... Setting up libunistring2:armel (1.0-2) ... Setting up libdeflate0:armel (1.14-1) ... Setting up zlib1g:armel (1:1.2.13.dfsg-1) ... Setting up libcrypt1:armel (1:4.4.33-2) ... Setting up libidn2-0:armel (2.3.3-1+b1) ... Setting up libcom-err2:armel (1.47.0-2) ... Setting up libgomp1:armel (12.2.0-14) ... Setting up libasan6:armel (11.3.0-15) ... Setting up libkrb5support0:armel (1.20.1-2) ... Setting up libsasl2-modules-db:armel (2.1.28+dfsg-11) ... Setting up libjellyfish-2.0-2:armel (2.3.0-15+b3) ... Setting up libnettle8:armel (3.8.1-2) ... Setting up libgmp10:armel (2:6.2.1+dfsg1-1.1) ... Setting up libp11-kit0:armel (0.24.1-2) ... Setting up libatomic1:armel (12.2.0-14) ... Setting up libk5crypto3:armel (1.20.1-2) ... Setting up libsasl2-2:armel (2.1.28+dfsg-11) ... Setting up libubsan1:armel (12.2.0-14) ... Setting up libgcc-11-dev:armel (11.3.0-15) ... Setting up libcrypt-dev:armel (1:4.4.33-2) ... Setting up libpsl5:armel (0.21.2-1) ... Setting up libhogweed6:armel (3.8.1-2) ... Setting up libssl3:armel (3.0.8-1) ... Setting up libgnutls30:armel (3.7.9-2) ... Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libssh2-1:armel (1.10.0-3+b1) ... Setting up libkrb5-3:armel (1.20.1-2) ... Setting up libldap-2.5-0:armel (2.5.13+dfsg-5) ... Setting up libgssapi-krb5-2:armel (1.20.1-2) ... Setting up libtirpc3:armel (1.3.3+ds-1) ... Setting up libcurl3-gnutls:armel (7.88.1-10) ... Setting up libtirpc-dev:armel (1.3.3+ds-1) ... Setting up libnsl2:armel (1.3.0-2) ... Setting up libhts3:armel (1.16+ds-3) ... Setting up jellyfish:armel (2.3.0-15+b3) ... Setting up libnsl-dev:armel (1.3.0-2) ... Setting up libc6-dev:armel (2.36-9) ... Setting up libstdc++-11-dev:armel (11.3.0-15) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.36-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) amd64 (x86_64) Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.22 g++-11_11.3.0-15 g++-12_12.2.0-14 gcc-11_11.3.0-15 gcc-12_12.2.0-14 libc6-dev_2.36-9 libstdc++-11-dev_11.3.0-15 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-armel-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-armel-cross_12.2.0-14cross1 linux-libc-dev_6.1.27-1 Package versions: adduser_3.134 apt_2.6.1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_12.4 base-passwd_3.6.1 bash_5.2.15-2+b2 binutils_2.40-2 binutils-arm-linux-gnueabi_2.40-2 binutils-common_2.40-2 binutils-x86-64-linux-gnu_2.40-2 bsdextrautils_2.38.1-5+b1 bsdutils_1:2.38.1-5+b1 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-3 cpp-11_11.3.0-15 cpp-12_12.2.0-14 cpp-12-arm-linux-gnueabi_12.2.0-14cross1 cpp-arm-linux-gnueabi_4:12.2.0-3 cross-config_2.6.20 crossbuild-essential-armel_12.9 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2023.3 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_5.20230130 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22 dpkg-cross_2.6.20 dpkg-dev_1.21.22 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.2.0-3 g++-11_11.3.0-15 g++-12_12.2.0-14 g++-12-arm-linux-gnueabi_12.2.0-14cross1 g++-arm-linux-gnueabi_4:12.2.0-3 gcc_4:12.2.0-3 gcc-11_11.3.0-15 gcc-11-base_11.3.0-15 gcc-12_12.2.0-14 gcc-12-arm-linux-gnueabi_12.2.0-14cross1 gcc-12-arm-linux-gnueabi-base_12.2.0-14cross1 gcc-12-base_12.2.0-14 gcc-12-cross-base_12.2.0-14cross1 gcc-9-base_9.5.0-3 gcc-arm-linux-gnueabi_4:12.2.0-3 gettext_0.21-12 gettext-base_0.21-12 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 jellyfish_2.3.0-15+b3 libacl1_2.3.1-3 libapt-pkg6.0_2.6.1 libarchive-zip-perl_1.68-1 libasan6_11.3.0-15 libasan8_12.2.0-14 libasan8-armel-cross_12.2.0-14cross1 libatomic1_12.2.0-14 libatomic1-armel-cross_12.2.0-14cross1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.9-1 libaudit1_1:3.0.9-1 libbinutils_2.40-2 libblkid1_2.38.1-5+b1 libbrotli1_1.0.9-2+b6 libbz2-1.0_1.0.8-5+b1 libc-bin_2.36-9 libc-dev-bin_2.36-9 libc6_2.36-9 libc6-armel-cross_2.36-8cross1 libc6-dev_2.36-9 libc6-dev-armel-cross_2.36-8cross1 libcap-ng0_0.8.3-1+b3 libcap2_1:2.66-4 libcc1-0_12.2.0-14 libcom-err2_1.47.0-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.33-2 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source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: centrifuge Binary: centrifuge Architecture: any Version: 1.0.3-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://ccb.jhu.edu/software/centrifuge/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/centrifuge Vcs-Git: https://salsa.debian.org/med-team/centrifuge.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, jellyfish Package-List: centrifuge deb science optional arch=any Checksums-Sha1: c31fc38298b74f5b81f1d3704f7c4311231d6bc0 701273 centrifuge_1.0.3.orig.tar.gz 8be8e53beb61d1f6a4b681b1e383999e99bde55d 15220 centrifuge_1.0.3-11.debian.tar.xz Checksums-Sha256: 71340f5c0c20dd4f7c4d98ea87f9edcbb1443fff8434e816a5465cbebaca9343 701273 centrifuge_1.0.3.orig.tar.gz bdf867738f93e51112837a45b213b0fb3be9950bda5062f9cd179f9f348d5429 15220 centrifuge_1.0.3-11.debian.tar.xz Files: 4ab20730ae43f26a98b754d83213e10c 701273 centrifuge_1.0.3.orig.tar.gz 2e0e361b6c2198258d63e58f6cc8758e 15220 centrifuge_1.0.3-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmNDtB0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHXPhAAm3zgl7OYJTpQav3J3S8BBp54/PHpvJKM dHvdrB8do4YyXlSU5nmHy2iwrevfQrx8mwIhfHMn9xnlr2ruWjq77KIbzTFlTL4k qE7em+qENDPAurDKptBhnePWLopygWgTKFes9QiX1IPu5I7BPXPqzekv7rnPXzDe LRCehwzgEuL6yGRNKh3gW7SO2lKUOHZoOK90cn46AqeDoGVRVKGqaOzu87hc89Te EmW6xEP75VjT5Oc9JaO6cThmSi77fTnJFfyeKGjGky3zroXgg0uCWzCSgwMw1rcw iqmvo88fecgdQN3TZHMiA1IvMtK6ZXAGtHBqFyvqTb5dTO/i58Z7cnL9Ogt4ucOI I/ngUUcNZcRuMv75LhiA8tC94qwLNeIt3ivQxzeCiNhr5Za8u5+nHQ0u3Lr89Z9E DemyrkR+6beiRH1cETCN92PUONgwFit8LT1wCIE0i54USDQ54w28kbCoNIpuOpVZ OheWUXLtqtIqzBL/fP1uyi9BlS/WlpYTqZjNlXjIsTsWzk2wRorUd2VViY7M022/ /UvrSOsymKOj1U9Z8zpdHtUNh0XI6mF8LD2wKHb98k9B3zGKp0xeDUtThlQG49Ub 4T/IoX9PCH9qHzUTUxaE+HFrmcgrWG0pOJ0xtZth0ISNWTHh6IjCtoF8nAvS+iy0 oLuHATRcYdg= =4KSz -----END PGP SIGNATURE----- gpgv: Signature made Mon Oct 10 05:56:45 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./centrifuge_1.0.3-11.dsc: no acceptable signature found dpkg-source: info: extracting centrifuge in /<> dpkg-source: info: unpacking centrifuge_1.0.3.orig.tar.gz dpkg-source: info: unpacking centrifuge_1.0.3-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Makefile-Use-consistent-build-time-and-build-host.patch dpkg-source: info: applying fix_auto_ptr_usage_in_gcc-7.patch dpkg-source: info: applying 0002-Fix-build-with-rank.patch dpkg-source: info: applying 0003-Fix-make-install-DESTDIR.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying no_msse2.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix_arm_build.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-043a216d-5f2e-4c85-aa4a-ff2bba684f9c SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package centrifuge dpkg-buildpackage: info: source version 1.0.3-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean --with python3 dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f centrifuge-build-bin centrifuge-class centrifuge-inspect-bin centrifuge-build-bin-debug centrifuge-class-debug centrifuge-inspect-bin-debug \ centrifuge-build-bin.exe centrifuge-class.exe centrifuge-inspect-bin.exe centrifuge-build-bin-debug.exe centrifuge-class-debug.exe centrifuge-inspect-bin-debug.exe \ centrifuge-src.zip centrifuge-bin.zip rm -f core.* .tmp.head rm -rf *.dSYM make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- BITS=32 BITS_FLAG= make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc BITS=32 BITS_FLAG= make[2]: Entering directory '/<>' arm-linux-gnueabi-g++ -O3 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -funroll-loops -g3 \"" \ -fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"BUILDHOST\"" -DBUILD_TIME="\"`date --utc --date=@1665381161 +%F`\"" -DCOMPILER_VERSION="\"`arm-linux-gnueabi-g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBOWTIE_MM -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ \ -o centrifuge-build-bin centrifuge_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp diff_sample.cpp centrifuge_build_main.cpp \ -lpthread In file included from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge_build.cpp:27: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ blockwise_sa.h: In function ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 490 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 491 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = S2bDnaString]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:15: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ bt2_idx.h: In instantiation of ‘void Ebwt::buildToDisk(InorderBlockwiseSA&, const TStr&, std::ostream&, std::ostream&, std::ostream*, std::ostream*, const EList&, int) [with TStr = SString; index_t = long long unsigned int; std::ostream = std::basic_ostream]’: bt2_idx.h:1492:16: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const std::string&, EList >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here bt2_idx.h:3452:41: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 3452 | for(size_t k = 0; k < kmer_size; k++) { | ~~^~~~~~~~~~~ bt2_idx.h:3641:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 3641 | for(size_t k = 0; k < kmer_size; k++) { | ~~^~~~~~~~~~~ bt2_idx.h: In instantiation of ‘void Ebwt::buildToDisk(InorderBlockwiseSA&, const TStr&, std::ostream&, std::ostream&, std::ostream*, std::ostream*, const EList&, int) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ostream = std::basic_ostream]’: bt2_idx.h:1492:16: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const std::string&, EList >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:697:25: required from here bt2_idx.h:3452:41: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 3452 | for(size_t k = 0; k < kmer_size; k++) { | ~~^~~~~~~~~~~ bt2_idx.h:3641:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 3641 | for(size_t k = 0; k < kmer_size; k++) { | ~~^~~~~~~~~~~ diff_sample.h: In instantiation of ‘void DifferenceCoverSample::build(int) [with TStr = SString]’: blockwise_sa.h:383:20: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const std::string&, EList >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here diff_sample.h:813:43: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 813 | sanityCheckOrderedSufs(t, t.length(), sPrimeArr, sPrimeSz, v); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diff_sample.h:813:43: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] diff_sample.h: In instantiation of ‘void DifferenceCoverSample::build(int) [with TStr = S2bDnaString]’: blockwise_sa.h:383:20: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = S2bDnaString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = S2bDnaString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = S2bDnaString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const std::string&, EList >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:697:25: required from here diff_sample.h:813:43: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf2(const T&, TIndexOffU*, size_t, TIndexOffU*, int, bool, bool, size_t, EList*) [with T = SString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: diff_sample.h:772:30: required from ‘void DifferenceCoverSample::build(int) [with TStr = SString]’ blockwise_sa.h:383:20: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const std::string&, EList >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here multikey_qsort.h:661:39: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 661 | sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In instantiation of ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = SString]’: blockwise_sa.h:607:9: required from ‘void KarkkainenBlockwiseSA::buildSamples() [with TStr = SString]’ blockwise_sa.h:388:4: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const std::string&, EList >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here blockwise_sa.h:460:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 460 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 461 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h:460:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf2(const T&, TIndexOffU*, size_t, TIndexOffU*, int, bool, bool, size_t, EList*) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: diff_sample.h:772:30: required from ‘void DifferenceCoverSample::build(int) [with TStr = S2bDnaString]’ blockwise_sa.h:383:20: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = S2bDnaString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = S2bDnaString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = S2bDnaString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const std::string&, EList >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:697:25: required from here multikey_qsort.h:661:39: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 661 | sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:454:19: required from ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = SString]’ blockwise_sa.h:607:9: required from ‘void KarkkainenBlockwiseSA::buildSamples() [with TStr = SString]’ blockwise_sa.h:388:4: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const std::string&, EList >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = SString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:460:15: required from ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = SString]’ blockwise_sa.h:607:9: required from ‘void KarkkainenBlockwiseSA::buildSamples() [with TStr = SString]’ blockwise_sa.h:388:4: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const std::string&, EList >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:454:19: required from ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = SString]’ blockwise_sa.h:607:9: required from ‘void KarkkainenBlockwiseSA::buildSamples() [with TStr = SString]’ blockwise_sa.h:388:4: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const std::string&, EList >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:454:19: required from ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = SString]’ blockwise_sa.h:607:9: required from ‘void KarkkainenBlockwiseSA::buildSamples() [with TStr = SString]’ blockwise_sa.h:388:4: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const std::string&, EList >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:454:19: required from ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = SString]’ blockwise_sa.h:607:9: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const std::string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const std::string&, const std::string&, const std::string&, const std::string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const std::string&, EList >&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ In file included from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ blockwise_sa.h: In function ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 490 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 491 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = S2bDnaString]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:15: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ In file included from diff_sample.cpp:20: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ arm-linux-gnueabi-g++ -O3 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -funroll-loops -g3 \"" \ -fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"BUILDHOST\"" -DBUILD_TIME="\"`date --utc --date=@1665381161 +%F`\"" -DCOMPILER_VERSION="\"`arm-linux-gnueabi-g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBOWTIE_MM -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ \ -o centrifuge-class centrifuge.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp qual.cpp pat.cpp read_qseq.cpp ref_coord.cpp mask.cpp pe.cpp aligner_seed_policy.cpp scoring.cpp presets.cpp simple_func.cpp random_util.cpp outq.cpp centrifuge_main.cpp \ -lpthread In file included from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge.cpp:34: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ blockwise_sa.h: In function ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 490 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 491 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = S2bDnaString]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:15: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from centrifuge.cpp:47: classifier.h: In instantiation of ‘int Classifier::go(const Scoring&, const Ebwt&, const Ebwt&, const BitPairReference&, WalkMetrics&, PerReadMetrics&, HIMetrics&, SpeciesMetrics&, RandomSource&, AlnSinkWrap&) [with index_t = long long unsigned int; local_index_t = short unsigned int]’: centrifuge.cpp:2660:34: required from here classifier.h:411:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 411 | if(i + 1 < _hitMap.size()) { | ~~~~~~^~~~~~~~~~~~~~~~ classifier.h:432:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 432 | if(_hitMap[i].rank + 1 >= _hitMap[i].path.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ classifier.h:442:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 442 | uint64_t parent_taxID = (rank + 1 >= _hitMap[i].path.size() ? 1 : _hitMap[i].path[rank + 1]); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ classifier.h:475:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 475 | uint64_t cur_parent_taxID = (rank + 1 >= _hitMap[i].path.size() ? 1 : _hitMap[i].path[rank + 1]); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ classifier.h: In instantiation of ‘void Classifier::searchForwardAndReverse(index_t, const Ebwt&, const Scoring&, RandomSource&, const ReportingParams&, index_t) [with index_t = long long unsigned int; local_index_t = short unsigned int]’: classifier.h:238:13: required from ‘int Classifier::go(const Scoring&, const Ebwt&, const Ebwt&, const BitPairReference&, WalkMetrics&, PerReadMetrics&, HIMetrics&, SpeciesMetrics&, RandomSource&, AlnSinkWrap&) [with index_t = long long unsigned int; local_index_t = short unsigned int]’ centrifuge.cpp:2660:34: required from here classifier.h:850:50: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘const THitInt’ {aka ‘const long long int’} [-Wsign-compare] 850 | hit.size() + rchit.size() > rp.ihits) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ classifier.h:647:16: warning: variable ‘cur’ set but not used [-Wunused-but-set-variable] 647 | size_t cur[2] = {0, 0} ; | ^~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ In file included from centrifuge.cpp:41: aln_sink.h: In instantiation of ‘void AlnSinkSam::appendMate(Ebwt&, BTString&, const Read&, const Read*, TReadId, AlnRes*, AlnRes*, const AlnSetSumm&, const PerReadMetrics&, SpeciesMetrics&, size_t) [with index_t = long long unsigned int; BTString = SStringExpandable; TReadId = long long unsigned int; size_t = unsigned int]’: aln_sink.h:1407:9: required from ‘void AlnSinkSam::append(BTString&, size_t, const Read*, const Read*, TReadId, AlnRes*, AlnRes*, const AlnSetSumm&, const PerReadMetrics&, SpeciesMetrics&, bool, size_t) [with index_t = long long unsigned int; BTString = SStringExpandable; size_t = unsigned int; TReadId = long long unsigned int]’ aln_sink.h:1392:15: required from here aln_sink.h:2302:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2302 | for (int i=0; i < this->tab_fmt_cols_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ blockwise_sa.h: In function ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 490 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 491 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = S2bDnaString]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:15: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ arm-linux-gnueabi-g++ -O3 -funroll-loops -g3 \ -DCOMPILER_OPTIONS="\"-O3 -funroll-loops -g3 \"" \ -fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"BUILDHOST\"" -DBUILD_TIME="\"`date --utc --date=@1665381161 +%F`\"" -DCOMPILER_VERSION="\"`arm-linux-gnueabi-g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBOWTIE_MM -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -Wall \ -I . \ -o centrifuge-inspect-bin centrifuge_inspect.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp \ -lpthread In file included from blockwise_sa.h:29, from bt2_idx.h:44, from hier_idx.h:24, from centrifuge_inspect.cpp:28: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ blockwise_sa.h: In function ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 490 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 491 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = S2bDnaString]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:15: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/set:60, from centrifuge_inspect.cpp:24: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/map:61, from bt2_idx.h:34: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘Ebwt::Ebwt(const std::string&, int, int, bool, int32_t, int32_t, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool) [with index_t = long long unsigned int]’ at bt2_idx.h:702:28: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘Ebwt::Ebwt(const std::string&, int, int, bool, int32_t, int32_t, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool) [with index_t = long long unsigned int]’ at bt2_idx.h:743:36: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ blockwise_sa.h: In function ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 490 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 491 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = S2bDnaString]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:15: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- prefix=/usr/lib/centrifuge make -j1 install DESTDIR=/<>/debian/centrifuge AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" prefix=/usr/lib/centrifuge make[2]: Entering directory '/<>' mkdir -p /<>/debian/centrifuge/usr/lib/centrifuge/bin mkdir -p /<>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/indices install -m 0644 indices/Makefile /<>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/indices install -d -m 0755 /<>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc install -m 0644 doc/* /<>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc for file in centrifuge-build-bin centrifuge-class centrifuge-inspect-bin centrifuge centrifuge-build centrifuge-inspect centrifuge-download centrifuge-kreport centrifuge-BuildSharedSequence.pl centrifuge-RemoveEmptySequence.pl centrifuge-RemoveN.pl centrifuge-compress.pl centrifuge-sort-nt.pl; do \ install -m 0755 $file /<>/debian/centrifuge/usr/lib/centrifuge/bin ; \ done make[2]: Leaving directory '/<>' mv debian/centrifuge/usr/lib/centrifuge/bin/* debian/centrifuge/usr/lib/centrifuge/ rmdir debian/centrifuge/usr/lib/centrifuge/bin # move documentation to correct location mkdir -p debian/centrifuge/usr/share/doc/centrifuge/html mv debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc/*html \ debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc/*css \ debian/centrifuge/usr/share/doc/centrifuge/html # remove useless stuff in documentation dir rm -rf debian/centrifuge/usr/lib/centrifuge/share/doc/ make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done rm -rf debian/*/usr/lib/centrifuge/share/centrifuge/doc find debian -name manual.inc.html | xargs rm -rf make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_python3 -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/centrifuge/usr/lib/centrifuge/centrifuge-inspect-bin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/centrifuge/usr/lib/centrifuge/centrifuge-class contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/centrifuge/usr/lib/centrifuge/centrifuge-build-bin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package centrifuge: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package centrifuge: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'centrifuge' in '../centrifuge_1.0.3-11_armel.deb'. dpkg-deb: building package 'centrifuge-dbgsym' in '../centrifuge-dbgsym_1.0.3-11_armel.deb'. dpkg-genbuildinfo --build=any -O../centrifuge_1.0.3-11_armel.buildinfo dpkg-genchanges --build=any -O../centrifuge_1.0.3-11_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-05-27T08:21:16Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ centrifuge_1.0.3-11_armel.changes: ---------------------------------- Format: 1.8 Date: Mon, 10 Oct 2022 07:52:41 +0200 Source: centrifuge Binary: centrifuge centrifuge-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 1.0.3-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: centrifuge - rapid and memory-efficient system for classification of DNA seque Closes: 1021513 Changes: centrifuge (1.0.3-11) unstable; urgency=medium . * Builds reproducibly (thanks for the patch to Vagrant Cascadian) Closes: #1021513 * Standards-Version: 4.6.1 (routine-update) * Set upstream metadata fields: Repository-Browse. * Lintian-overrides for false positive (see lintian bug #1017966) Checksums-Sha1: 0d35370bdf4551b2901d675b401e0a82211ecafc 3460884 centrifuge-dbgsym_1.0.3-11_armel.deb ab71fae5e1f778f23caff586107aeef4cec96a33 6375 centrifuge_1.0.3-11_armel.buildinfo 592e724eeceffc36761be660684a0545b2f24af7 507532 centrifuge_1.0.3-11_armel.deb Checksums-Sha256: 71c6993711e09e6d3600302d12b2ef1bd452f51e65b6846bfc04866d087e817b 3460884 centrifuge-dbgsym_1.0.3-11_armel.deb c44c4093ca4e1146cd2880f3d26d5d965e0dce967e2f4b2543829da233052eec 6375 centrifuge_1.0.3-11_armel.buildinfo 209b2e2e350cb3f459ab6b2b769819cda1d84a272087cc29a2b99056a65b2cd4 507532 centrifuge_1.0.3-11_armel.deb Files: ec1daeeb1d707a973b8bafb7d73d7d3a 3460884 debug optional centrifuge-dbgsym_1.0.3-11_armel.deb 05b67dfe1766dbcdb49a5649059ab703 6375 science optional centrifuge_1.0.3-11_armel.buildinfo 9f00a1fd55fee0f743685b5ba6a4997a 507532 science optional centrifuge_1.0.3-11_armel.deb /<>/centrifuge_1.0.3-11_armel.changes.new could not be renamed to /<>/centrifuge_1.0.3-11_armel.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: centrifuge Binary: centrifuge centrifuge-dbgsym Architecture: armel Version: 1.0.3-11 Checksums-Md5: ec1daeeb1d707a973b8bafb7d73d7d3a 3460884 centrifuge-dbgsym_1.0.3-11_armel.deb 9f00a1fd55fee0f743685b5ba6a4997a 507532 centrifuge_1.0.3-11_armel.deb Checksums-Sha1: 0d35370bdf4551b2901d675b401e0a82211ecafc 3460884 centrifuge-dbgsym_1.0.3-11_armel.deb 592e724eeceffc36761be660684a0545b2f24af7 507532 centrifuge_1.0.3-11_armel.deb Checksums-Sha256: 71c6993711e09e6d3600302d12b2ef1bd452f51e65b6846bfc04866d087e817b 3460884 centrifuge-dbgsym_1.0.3-11_armel.deb 209b2e2e350cb3f459ab6b2b769819cda1d84a272087cc29a2b99056a65b2cd4 507532 centrifuge_1.0.3-11_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 27 May 2023 08:21:16 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-12), autotools-dev (= 20220109.1), base-files (= 12.4), base-passwd (= 3.6.1), bash (= 5.2.15-2+b2), binutils (= 2.40-2), binutils-common (= 2.40-2), binutils-x86-64-linux-gnu (= 2.40-2), bsdextrautils (= 2.38.1-5+b1), bsdutils (= 1:2.38.1-5+b1), build-essential (= 12.9), bzip2 (= 1.0.8-5+b1), coreutils (= 9.1-1), cpp (= 4:12.2.0-3), cpp-11 (= 11.3.0-15), cpp-12 (= 12.2.0-14), dash (= 0.5.12-2), debconf (= 1.5.82), debhelper (= 13.11.4), debianutils (= 5.7-0.4), dh-autoreconf (= 20), dh-python (= 5.20230130), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22), dpkg-dev (= 1.21.22), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-4), g++ (= 4:12.2.0-3), g++-12 (= 12.2.0-14), gcc (= 4:12.2.0-3), gcc-11 (= 11.3.0-15), gcc-11-base (= 11.3.0-15), gcc-12 (= 12.2.0-14), gcc-12-base (= 12.2.0-14), gettext (= 0.21-12), gettext-base (= 0.21-12), grep (= 3.8-5), groff-base (= 1.22.4-10), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), jellyfish (= 2.3.0-15+b3), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-15), libasan8 (= 12.2.0-14), libatomic1 (= 12.2.0-14), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.0.9-1), libaudit1 (= 1:3.0.9-1), libbinutils (= 2.40-2), libblkid1 (= 2.38.1-5+b1), libbrotli1 (= 1.0.9-2+b6), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.36-9), libc-dev-bin (= 2.36-9), libc6 (= 2.36-9), libc6-dev (= 2.36-9), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-4), libcc1-0 (= 12.2.0-14), libcom-err2 (= 1.47.0-2), libcrypt-dev (= 1:4.4.33-2), libcrypt1 (= 1:4.4.33-2), libctf-nobfd0 (= 2.40-2), libctf0 (= 2.40-2), libcurl3-gnutls (= 7.88.1-10), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.270), libdebhelper-perl (= 13.11.4), libdeflate0 (= 1.14-1), libdpkg-perl (= 1.21.22), libelf1 (= 0.188-2.1), libexpat1 (= 2.5.0-1), libffi8 (= 3.4.4-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.3.0-15), libgcc-12-dev (= 12.2.0-14), libgcc-s1 (= 12.2.0-14), libgcrypt20 (= 1.10.1-3), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1.1), libgnutls30 (= 3.7.9-2), libgomp1 (= 12.2.0-14), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.40-2), libgssapi-krb5-2 (= 1.20.1-2), libhogweed6 (= 3.8.1-2), libhts3 (= 1.16+ds-3), libhtscodecs2 (= 1.3.0-4), libicu72 (= 72.1-3), libidn2-0 (= 2.3.3-1+b1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-14), libjansson4 (= 2.14-2), libjellyfish-2.0-2 (= 2.3.0-15+b3), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), libldap-2.5-0 (= 2.5.13+dfsg-5), liblsan0 (= 12.2.0-14), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-5+b1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4-4), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.53.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.24.1-2), libpam-modules (= 1.5.2-6), libpam-modules-bin (= 1.5.2-6), libpam-runtime (= 1.5.2-6), libpam0g (= 1.5.2-6), libpcre2-8-0 (= 10.42-1), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libpsl5 (= 0.21.2-1), libpython3-stdlib (= 3.11.2-1+b1), libpython3.11-minimal (= 3.11.2-6), libpython3.11-stdlib (= 3.11.2-6), libquadmath0 (= 12.2.0-14), libreadline8 (= 8.2-1.3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-11), libsasl2-modules-db (= 2.1.28+dfsg-11), libseccomp2 (= 2.5.4-1+b3), libselinux1 (= 3.4-1+b5), libsmartcols1 (= 2.38.1-5+b1), libsqlite3-0 (= 3.40.1-2), libssh2-1 (= 1.10.0-3+b1), libssl3 (= 3.0.8-1), libstdc++-12-dev (= 12.2.0-14), libstdc++6 (= 12.2.0-14), libsub-override-perl (= 0.09-4), libsystemd0 (= 252.6-1), libtasn1-6 (= 4.19.0-2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4-4), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libtsan0 (= 11.3.0-15), libtsan2 (= 12.2.0-14), libubsan1 (= 12.2.0-14), libuchardet0 (= 0.0.7-1), libudev1 (= 252.6-1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-5+b1), libxml2 (= 2.9.14+dfsg-1.2), libzstd1 (= 1.5.4+dfsg2-5), linux-libc-dev (= 6.1.27-1), login (= 1:4.13+dfsg1-1+b1), m4 (= 1.4.19-3), make (= 4.3-4.1), man-db (= 2.11.2-2), mawk (= 1.3.4.20200120-3.1), media-types (= 10.0.0), ncurses-base (= 6.4-4), ncurses-bin (= 6.4-4), patch (= 2.7.6-7), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.2-1+b1), python3-distutils (= 3.11.2-3), python3-lib2to3 (= 3.11.2-3), python3-minimal (= 3.11.2-1+b1), python3.11 (= 3.11.2-6), python3.11-minimal (= 3.11.2-6), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.17+nmu1), sysvinit-utils (= 3.06-4), tar (= 1.34+dfsg-1.2), usrmerge (= 35), util-linux (= 2.38.1-5+b1), util-linux-extra (= 2.38.1-5+b1), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1665381161" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ centrifuge-dbgsym_1.0.3-11_armel.deb ------------------------------------ new Debian package, version 2.0. size 3460884 bytes: control archive=692 bytes. 467 bytes, 12 lines control 406 bytes, 4 lines md5sums Package: centrifuge-dbgsym Source: centrifuge Version: 1.0.3-11 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 3541 Depends: centrifuge (= 1.0.3-11) Section: debug Priority: optional Description: debug symbols for centrifuge Build-Ids: 75780335ca637ec3eedd4f10ef84573da5de55dd 962d7cb3b17052b474e6a96cb8aa6e42b77e84a3 f7e76feb936edcdecb98a181606adfb923515700 drwxr-xr-x root/root 0 2022-10-10 05:52 ./ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/debug/.build-id/75/ -rw-r--r-- root/root 972564 2022-10-10 05:52 ./usr/lib/debug/.build-id/75/780335ca637ec3eedd4f10ef84573da5de55dd.debug drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/debug/.build-id/96/ -rw-r--r-- root/root 1556284 2022-10-10 05:52 ./usr/lib/debug/.build-id/96/2d7cb3b17052b474e6a96cb8aa6e42b77e84a3.debug drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/debug/.build-id/f7/ -rw-r--r-- root/root 846652 2022-10-10 05:52 ./usr/lib/debug/.build-id/f7/e76feb936edcdecb98a181606adfb923515700.debug drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/debug/.dwz/arm-linux-gnueabi/ -rw-r--r-- root/root 235320 2022-10-10 05:52 ./usr/lib/debug/.dwz/arm-linux-gnueabi/centrifuge.debug drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/share/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-10-10 05:52 ./usr/share/doc/centrifuge-dbgsym -> centrifuge centrifuge_1.0.3-11_armel.deb ----------------------------- new Debian package, version 2.0. size 507532 bytes: control archive=1792 bytes. 1168 bytes, 21 lines control 2253 bytes, 30 lines md5sums Package: centrifuge Version: 1.0.3-11 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1501 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libstdc++6 (>= 11), python3:any, python3, hisat2, jellyfish Section: science Priority: optional Homepage: https://ccb.jhu.edu/software/centrifuge/ Description: rapid and memory-efficient system for classification of DNA sequences Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers. drwxr-xr-x root/root 0 2022-10-10 05:52 ./ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/bin/ -rwxr-xr-x root/root 312 2022-10-10 05:52 ./usr/bin/centrifuge lrwxrwxrwx root/root 0 2022-10-10 05:52 ./usr/bin/centrifuge-build -> centrifuge lrwxrwxrwx root/root 0 2022-10-10 05:52 ./usr/bin/centrifuge-compress -> centrifuge lrwxrwxrwx root/root 0 2022-10-10 05:52 ./usr/bin/centrifuge-download -> centrifuge lrwxrwxrwx root/root 0 2022-10-10 05:52 ./usr/bin/centrifuge-inspect -> centrifuge drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/centrifuge/ -rwxr-xr-x root/root 19883 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge -rwxr-xr-x root/root 12126 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-BuildSharedSequence.pl -rwxr-xr-x root/root 407 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-RemoveEmptySequence.pl -rwxr-xr-x root/root 1007 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-RemoveN.pl -rwxr-xr-x root/root 2312 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-build -rwxr-xr-x root/root 414328 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-build-bin -rwxr-xr-x root/root 549604 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-class -rwxr-xr-x root/root 13305 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-compress.pl -rwxr-xr-x root/root 11670 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-download -rwxr-xr-x root/root 1868 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-inspect -rwxr-xr-x root/root 345856 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-inspect-bin -rwxr-xr-x root/root 5231 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-kreport -rwxr-xr-x root/root 3214 2022-10-10 05:52 ./usr/lib/centrifuge/centrifuge-sort-nt.pl drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/centrifuge/share/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/centrifuge/share/centrifuge/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/lib/centrifuge/share/centrifuge/indices/ -rw-r--r-- root/root 12887 2022-10-10 05:52 ./usr/lib/centrifuge/share/centrifuge/indices/Makefile drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/share/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/share/doc/centrifuge/ -rw-r--r-- root/root 1025 2022-10-10 05:52 ./usr/share/doc/centrifuge/changelog.Debian.gz -rw-r--r-- root/root 1054 2022-10-10 05:52 ./usr/share/doc/centrifuge/copyright drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/share/doc/centrifuge/html/ -rw-r--r-- root/root 1234 2022-10-10 05:52 ./usr/share/doc/centrifuge/html/add.css -rw-r--r-- root/root 1158 2022-10-10 05:52 ./usr/share/doc/centrifuge/html/faq.shtml -rw-r--r-- root/root 423 2022-10-10 05:52 ./usr/share/doc/centrifuge/html/footer.inc.html -rw-r--r-- root/root 2388 2022-10-10 05:52 ./usr/share/doc/centrifuge/html/index.shtml.gz -rw-r--r-- root/root 84288 2022-10-10 05:52 ./usr/share/doc/centrifuge/html/manual.html -rw-r--r-- root/root 1068 2022-10-10 05:52 ./usr/share/doc/centrifuge/html/manual.shtml -rw-r--r-- root/root 1348 2022-10-10 05:52 ./usr/share/doc/centrifuge/html/sidebar.inc.shtml.gz -rw-r--r-- root/root 7942 2022-10-10 05:52 ./usr/share/doc/centrifuge/html/style.css drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/share/man/ drwxr-xr-x root/root 0 2022-10-10 05:52 ./usr/share/man/man1/ -rw-r--r-- root/root 1204 2022-10-10 05:52 ./usr/share/man/man1/centrifuge-build.1.gz -rw-r--r-- root/root 379 2022-10-10 05:52 ./usr/share/man/man1/centrifuge-compress.1.gz -rw-r--r-- root/root 854 2022-10-10 05:52 ./usr/share/man/man1/centrifuge-download.1.gz -rw-r--r-- root/root 920 2022-10-10 05:52 ./usr/share/man/man1/centrifuge-inspect.1.gz -rw-r--r-- root/root 1931 2022-10-10 05:52 ./usr/share/man/man1/centrifuge.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [560 B] Get:5 copy:/<>/apt_archive ./ Packages [648 B] Fetched 2171 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:armel t1utils unzip 0 upgraded, 124 newly installed, 0 to remove and 0 not upgraded. Need to get 12.6 MB of archives. After this operation, 49.1 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get:4 http://localhost:3142/debian sid/main amd64 ca-certificates all 20230311 [153 kB] Get:5 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.65-1 [33.3 kB] Get:6 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.5-5 [48.5 kB] Get:7 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1.1 [564 kB] Get:8 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1.1 [949 kB] Get:9 http://localhost:3142/debian sid/main amd64 iso-codes all 4.15.0-1 [2906 kB] Get:10 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:11 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b2 [69.2 kB] Get:12 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB] Get:13 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:14 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB] Get:15 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB] Get:16 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:18 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:19 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:20 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB] Get:21 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:22 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b1 [123 kB] Get:23 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:24 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:25 http://localhost:3142/debian sid/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:26 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.17-1 [90.4 kB] Get:27 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.81-1 [101 kB] Get:28 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.55-1 [220 kB] Get:29 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:30 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.14-1 [18.1 kB] Get:31 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b1 [36.4 kB] Get:32 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get:33 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.28-2 [16.4 kB] Get:34 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB] Get:35 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:36 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.113-1 [10.6 kB] Get:37 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.989-1 [50.5 kB] Get:38 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:39 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.35-1 [131 kB] Get:40 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get:41 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:42 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:43 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:44 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.58-2 [43.6 kB] Get:45 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b1 [35.2 kB] Get:46 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:48 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:49 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:50 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b1 [99.5 kB] Get:51 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:52 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:53 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b1 [24.3 kB] Get:54 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b1 [29.4 kB] Get:55 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:56 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:57 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:58 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:59 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:60 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:61 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:62 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:63 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:64 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB] Get:65 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:66 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:70 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:71 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:72 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get:73 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:74 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:75 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:76 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.68-1 [186 kB] Get:77 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:78 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:79 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:80 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:81 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004004-1 [13.3 kB] Get:82 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:83 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-5 [37.7 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:87 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:88 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:89 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:90 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:91 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:92 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:94 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:95 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:96 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:97 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB] Get:98 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:99 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:100 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:101 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:102 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.634-1+b2 [43.1 kB] Get:103 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:104 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.003+ds-1 [99.5 kB] Get:105 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.003+ds-1 [102 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:107 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.33-1 [58.4 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.28-1 [28.6 kB] Get:109 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:110 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:111 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1 [13.0 kB] Get:112 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:113 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:115 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB] Get:116 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.16-1 [116 kB] Get:117 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:118 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1 [34.4 kB] Get:119 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-5 [61.9 kB] Get:120 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:121 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:122 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:123 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:124 http://localhost:3142/debian sid/main amd64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.6 MB in 0s (105 MB/s) Selecting previously unselected package netbase. (Reading database ... 22228 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.0.8-1_amd64.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package diffstat. Preparing to unpack .../003-diffstat_1.65-1_amd64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../004-libassuan0_2.5.5-5_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../005-gpgconf_2.2.40-1.1_amd64.deb ... Unpacking gpgconf (2.2.40-1.1) ... Selecting previously unselected package gpg. 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Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../012-libdevel-callchecker-perl_0.008-2_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.008-2) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../013-libparams-classify-perl_0.015-2+b1_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2+b1) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../014-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../015-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../016-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... 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Unpacking libdata-messagepack-perl (1.02-1+b1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../044-libnet-domain-tld-perl_1.75-3_all.deb ... Unpacking libnet-domain-tld-perl (1.75-3) ... Selecting previously unselected package libdata-validate-domain-perl. Preparing to unpack .../045-libdata-validate-domain-perl_0.10-1.1_all.deb ... Unpacking libdata-validate-domain-perl (0.10-1.1) ... Selecting previously unselected package libnet-ipv6addr-perl. Preparing to unpack .../046-libnet-ipv6addr-perl_1.02-1_all.deb ... Unpacking libnet-ipv6addr-perl (1.02-1) ... Selecting previously unselected package libnet-netmask-perl. Preparing to unpack .../047-libnet-netmask-perl_2.0002-2_all.deb ... Unpacking libnet-netmask-perl (2.0002-2) ... Selecting previously unselected package libnetaddr-ip-perl. Preparing to unpack .../048-libnetaddr-ip-perl_4.079+dfsg-2+b1_amd64.deb ... Unpacking libnetaddr-ip-perl (4.079+dfsg-2+b1) ... 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Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.8-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b1) ... Setting up libperlio-gzip-perl (0.20-1+b1) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.003+ds-1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.17-1) ... Setting up iso-codes (4.15.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.40-1.1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.113-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.55-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.68-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.16-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 33376 Build-Time: 79 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 13 Job: centrifuge_1.0.3-11 Lintian: pass Machine Architecture: amd64 Package: centrifuge Package-Time: 101 Source-Version: 1.0.3-11 Space: 33376 Status: successful Version: 1.0.3-11 -------------------------------------------------------------------------------- Finished at 2023-05-27T08:21:16Z Build needed 00:01:41, 33376k disk space