sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | centrifuge 1.0.3-9 (armel) Fri, 15 Oct 2021 20:02:24 +0000 | +==============================================================================+ Package: centrifuge Version: 1.0.3-9 Source Version: 1.0.3-9 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-1f8c43ad-8ce7-421c-bcd9-dc17d631474b' with '<>' I: NOTICE: Log filtering will replace 'build/centrifuge-gCTXZH/resolver-YD6BZr' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-10-15-1401.30-F-2021-10-15-0801.34.pdiff [22.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-10-15-1401.30-F-2021-10-15-0801.34.pdiff [17.2 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-10-15-1401.30-F-2021-10-15-0801.34.pdiff [22.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-10-15-1401.30-F-2021-10-15-0801.34.pdiff [17.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main armel Packages [8416 kB] Fetched 8748 kB in 4s (2379 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'centrifuge' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/centrifuge.git Please use: git clone https://salsa.debian.org/med-team/centrifuge.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 718 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main centrifuge 1.0.3-9 (dsc) [2033 B] Get:2 http://debian.oregonstate.edu/debian unstable/main centrifuge 1.0.3-9 (tar) [701 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main centrifuge 1.0.3-9 (diff) [14.6 kB] Fetched 718 kB in 0s (8494 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/centrifuge-gCTXZH/centrifuge-1.0.3' with '<>' I: NOTICE: Log filtering will replace 'build/centrifuge-gCTXZH' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, jellyfish, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, jellyfish, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [429 B] Get:5 copy:/<>/apt_archive ./ Packages [518 B] Fetched 1904 B in 0s (72.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils build-essential cpp-11-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-python dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-arm-linux-gnueabi gcc-11-arm-linux-gnueabi-base gcc-11-base:armel gcc-11-cross-base gcc-9-base:armel gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian jellyfish:armel libarchive-zip-perl libasan5:armel libasan6-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1:armel libbz2-1.0:armel libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armel libcrypt1:armel libcurl3-gnutls:armel libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:armel libdpkg-perl libelf1 libexpat1 libffi8:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev-armel-cross libgcc-9-dev:armel libgcc-s1:armel libgcc-s1-armel-cross libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libhogweed6:armel libhts3:armel libhtscodecs2:armel libicu67 libidn2-0:armel libio-string-perl libjellyfish-2.0-2:armel libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.4-2:armel liblocale-gettext-perl liblzma5:armel libmagic-mgc libmagic1 libmpdec3 libnettle8:armel libnghttp2-14:armel libnsl-dev libnsl-dev:armel libnsl2:armel libp11-kit0:armel libperl5.32 libpipeline1 libpsl5:armel libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libsigsegv2 libsqlite3-0 libssh2-1:armel libssl1.1:armel libstdc++-11-dev libstdc++-11-dev-armel-cross libstdc++-9-dev:armel libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtasn1-6:armel libtirpc-dev libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring2:armel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db media-types perl perl-modules-5.32 po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.9 python3.9-minimal rpcsvc-proto sensible-utils ucf zlib1g:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-11-multilib gcc-11-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel glibc-doc manpages-dev:armel gnupg git bzr gnutls-bin:armel krb5-doc:armel krb5-user:armel libstdc++-11-doc libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binfmt-support Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx ca-certificates:armel libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:armel libldap-common:armel publicsuffix:armel ca-certificates libsasl2-modules:armel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils build-essential cpp-11-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-python dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-arm-linux-gnueabi gcc-11-arm-linux-gnueabi-base gcc-11-base:armel gcc-11-cross-base gcc-9-base:armel gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian jellyfish:armel libarchive-zip-perl libasan5:armel libasan6-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1:armel libbz2-1.0:armel libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armel libcrypt1:armel libcurl3-gnutls:armel libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:armel libdpkg-perl libelf1 libexpat1 libffi8:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev-armel-cross libgcc-9-dev:armel libgcc-s1:armel libgcc-s1-armel-cross libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libhogweed6:armel libhts3:armel libhtscodecs2:armel libicu67 libidn2-0:armel libio-string-perl libjellyfish-2.0-2:armel libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.4-2:armel liblocale-gettext-perl liblzma5:armel libmagic-mgc libmagic1 libmpdec3 libnettle8:armel libnghttp2-14:armel libnsl-dev libnsl-dev:armel libnsl2:armel libp11-kit0:armel libperl5.32 libpipeline1 libpsl5:armel libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libsigsegv2 libsqlite3-0 libssh2-1:armel libssl1.1:armel libstdc++-11-dev libstdc++-11-dev-armel-cross libstdc++-9-dev:armel libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtasn1-6:armel libtirpc-dev libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring2:armel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db media-types perl perl-modules-5.32 po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.9 python3.9-minimal rpcsvc-proto sbuild-build-depends-main-dummy:armel sensible-utils ucf zlib1g:armel 0 upgraded, 150 newly installed, 0 to remove and 0 not upgraded. Need to get 282 MB of archives. After this operation, 996 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-3 [143 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-7 [935 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-6 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-minimal amd64 3.9.7-4 [804 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.4.1-2+b1 [104 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9-minimal amd64 3.9.7-4 [1963 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 media-types all 4.0.0 [30.3 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-stdlib amd64 3.9.7-4 [1688 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9 amd64 3.9.7-4 [480 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main armel gcc-11-base armel 11.2.0-9 [205 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.4.0-3 [200 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.4-2 [819 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.37-7 [2865 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-2 [104 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.32-4 [2251 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.2.0-9 [1949 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.2.0-9 [49.7 MB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-arm-linux-gnueabi-base amd64 11.2.0-9cross1 [206 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-arm-linux-gnueabi amd64 11.2.0-9cross1 [48.3 MB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:11.2.0-2 [17.0 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-9cross1 [201 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.32-1cross4 [1121 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armel-cross all 11.2.0-9cross1 [38.5 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 11.2.0-9cross1 [88.5 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 11.2.0-9cross1 [8812 B] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-armel-cross all 11.2.0-9cross1 [1937 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 11.2.0-9cross1 [426 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 11.2.0-9cross1 [798 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-armel-cross all 11.2.0-9cross1 [703 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-arm-linux-gnueabi amd64 11.2.0-9cross1 [54.8 MB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:11.2.0-2 [1460 B] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.10.46-4cross4 [1436 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.32-1cross4 [1801 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-armel-cross all 11.2.0-9cross1 [1954 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-arm-linux-gnueabi amd64 11.2.0-9cross1 [52.4 MB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:11.2.0-2 [1176 B] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-5 [696 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.9 [6704 B] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.5.2 [192 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.5.2 [1056 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 python3-lib2to3 all 3.9.7-1 [79.4 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 python3-distutils all 3.9.7-1 [146 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armel libgcc-s1 armel 11.2.0-9 [38.4 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.32-4 [2349 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armel libbz2-1.0 armel 1.0.8-4 [45.5 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armel libbrotli1 armel 1.0.9-2+b2 [265 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armel libgmp10 armel 2:6.2.1+dfsg-2 [506 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armel libnettle8 armel 3.7.3-1 [281 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armel libhogweed6 armel 3.7.3-1 [307 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armel libunistring2 armel 0.9.10-6 [360 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armel libidn2-0 armel 2.3.2-2 [92.2 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armel libffi8 armel 3.4.2-3 [21.1 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armel libp11-kit0 armel 0.24.0-5 [327 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armel libtasn1-6 armel 4.17.0-2 [50.3 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armel libgnutls30 armel 3.7.2-2 [1275 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armel libcom-err2 armel 1.46.4-1 [74.5 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armel libkrb5support0 armel 1.18.3-7 [62.4 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armel libk5crypto3 armel 1.18.3-7 [108 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armel libkeyutils1 armel 1.6.1-2 [14.5 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armel libssl1.1 armel 1.1.1l-1 [1279 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main armel libkrb5-3 armel 1.18.3-7 [315 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main armel libgssapi-krb5-2 armel 1.18.3-7 [142 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main armel libdb5.3 armel 5.3.28+dfsg1-0.8 [572 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main armel libsasl2-modules-db armel 2.1.27+dfsg-2.1 [67.7 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main armel libsasl2-2 armel 2.1.27+dfsg-2.1 [98.4 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main armel libldap-2.4-2 armel 2.4.59+dfsg-1 [209 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main armel libnghttp2-14 armel 1.43.0-1 [65.5 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main armel libpsl5 armel 0.21.0-1.2 [56.2 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-2 [84.7 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-2+b2 [55.1 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main armel libssh2-1 armel 1.10.0-2 [162 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main armel libcurl3-gnutls armel 7.74.0-1.3+b1 [301 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main armel libdeflate0 armel 1.8-1 [42.6 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main armel libhtscodecs2 armel 1.1.1-3+b1 [51.3 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main armel liblzma5 armel 5.2.5-2 [159 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main armel libhts3 armel 1.13+ds-2 [343 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 11.2.0-9 [466 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main armel libjellyfish-2.0-2 armel 2.3.0-12 [56.6 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main armel jellyfish armel 2.3.0-12 [655 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.4.0-3 [2703 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 11.2.0-9 [9016 B] Get:139 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.14.12-1 [1399 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main armel libcrypt1 armel 1:4.4.25-2 [98.8 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main armel libcrypt-dev armel 1:4.4.25-2 [115 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main armel libtirpc3 armel 1.3.2-2 [71.6 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main armel libnsl2 armel 1.3.0-2 [33.0 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main armel libtirpc-dev armel 1.3.2-2 [182 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main armel libnsl-dev armel 1.3.0-2 [61.7 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.32-4 [1849 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 11.2.0-9 [90.6 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 11.2.0-9 [799 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.4.0-3 [641 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.4.0-3 [1761 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 282 MB in 3s (109 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10545 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.37.2-3_amd64.deb ... Unpacking bsdextrautils (2.37.2-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../05-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../06-libperl5.32_5.32.1-6_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-6) ... Selecting previously unselected package perl. Preparing to unpack .../07-perl_5.32.1-6_amd64.deb ... Unpacking perl (5.32.1-6) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../08-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../09-libpython3.9-minimal_3.9.7-4_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.7-4) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../10-libexpat1_2.4.1-2+b1_amd64.deb ... Unpacking libexpat1:amd64 (2.4.1-2+b1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../11-python3.9-minimal_3.9.7-4_amd64.deb ... Unpacking python3.9-minimal (3.9.7-4) ... Setting up libpython3.9-minimal:amd64 (3.9.7-4) ... Setting up libexpat1:amd64 (2.4.1-2+b1) ... Setting up python3.9-minimal (3.9.7-4) ... Selecting previously unselected package python3-minimal. (Reading database ... 13385 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../3-libsqlite3-0_3.36.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.36.0-2) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../4-libpython3.9-stdlib_3.9.7-4_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.7-4) ... Selecting previously unselected package python3.9. Preparing to unpack .../5-python3.9_3.9.7-4_amd64.deb ... Unpacking python3.9 (3.9.7-4) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... 13791 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package gcc-11-base:armel. Preparing to unpack .../001-gcc-11-base_11.2.0-9_armel.deb ... Unpacking gcc-11-base:armel (11.2.0-9) ... Selecting previously unselected package gcc-9-base:armel. Preparing to unpack .../002-gcc-9-base_9.4.0-3_armel.deb ... Unpacking gcc-9-base:armel (9.4.0-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../005-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../008-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../009-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.16.4-2_all.deb ... Unpacking automake (1:1.16.4-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package binutils-arm-linux-gnueabi. Preparing to unpack .../015-binutils-arm-linux-gnueabi_2.37-7_amd64.deb ... Unpacking binutils-arm-linux-gnueabi (2.37-7) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../016-libcrypt-dev_1%3a4.4.25-2_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.25-2) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../017-libtirpc-dev_1.3.2-2_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.2-2) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../018-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package rpcsvc-proto. Preparing to unpack .../019-rpcsvc-proto_1.4.2-4_amd64.deb ... Unpacking rpcsvc-proto (1.4.2-4) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../020-libc6-dev_2.32-4_amd64.deb ... Unpacking libc6-dev:amd64 (2.32-4) ... Selecting previously unselected package libstdc++-11-dev:amd64. Preparing to unpack .../021-libstdc++-11-dev_11.2.0-9_amd64.deb ... Unpacking libstdc++-11-dev:amd64 (11.2.0-9) ... Selecting previously unselected package g++-11. Preparing to unpack .../022-g++-11_11.2.0-9_amd64.deb ... Unpacking g++-11 (11.2.0-9) ... Selecting previously unselected package g++. Preparing to unpack .../023-g++_4%3a11.2.0-2_amd64.deb ... Unpacking g++ (4:11.2.0-2) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../024-libdpkg-perl_1.20.9_all.deb ... Unpacking libdpkg-perl (1.20.9) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../025-dpkg-dev_1.20.9_all.deb ... Unpacking dpkg-dev (1.20.9) ... Selecting previously unselected package build-essential. Preparing to unpack .../026-build-essential_12.9_amd64.deb ... Unpacking build-essential (12.9) ... Selecting previously unselected package gcc-11-arm-linux-gnueabi-base:amd64. Preparing to unpack .../027-gcc-11-arm-linux-gnueabi-base_11.2.0-9cross1_amd64.deb ... Unpacking gcc-11-arm-linux-gnueabi-base:amd64 (11.2.0-9cross1) ... Selecting previously unselected package cpp-11-arm-linux-gnueabi. Preparing to unpack .../028-cpp-11-arm-linux-gnueabi_11.2.0-9cross1_amd64.deb ... Unpacking cpp-11-arm-linux-gnueabi (11.2.0-9cross1) ... Selecting previously unselected package cpp-arm-linux-gnueabi. Preparing to unpack .../029-cpp-arm-linux-gnueabi_4%3a11.2.0-2_amd64.deb ... Unpacking cpp-arm-linux-gnueabi (4:11.2.0-2) ... Selecting previously unselected package cross-config. Preparing to unpack .../030-cross-config_2.6.18+nmu2_all.deb ... Unpacking cross-config (2.6.18+nmu2) ... Selecting previously unselected package gcc-11-cross-base. Preparing to unpack .../031-gcc-11-cross-base_11.2.0-9cross1_all.deb ... Unpacking gcc-11-cross-base (11.2.0-9cross1) ... Selecting previously unselected package libc6-armel-cross. Preparing to unpack .../032-libc6-armel-cross_2.32-1cross4_all.deb ... Unpacking libc6-armel-cross (2.32-1cross4) ... Selecting previously unselected package libgcc-s1-armel-cross. Preparing to unpack .../033-libgcc-s1-armel-cross_11.2.0-9cross1_all.deb ... Unpacking libgcc-s1-armel-cross (11.2.0-9cross1) ... Selecting previously unselected package libgomp1-armel-cross. Preparing to unpack .../034-libgomp1-armel-cross_11.2.0-9cross1_all.deb ... Unpacking libgomp1-armel-cross (11.2.0-9cross1) ... Selecting previously unselected package libatomic1-armel-cross. Preparing to unpack .../035-libatomic1-armel-cross_11.2.0-9cross1_all.deb ... Unpacking libatomic1-armel-cross (11.2.0-9cross1) ... Selecting previously unselected package libasan6-armel-cross. Preparing to unpack .../036-libasan6-armel-cross_11.2.0-9cross1_all.deb ... Unpacking libasan6-armel-cross (11.2.0-9cross1) ... Selecting previously unselected package libstdc++6-armel-cross. Preparing to unpack .../037-libstdc++6-armel-cross_11.2.0-9cross1_all.deb ... Unpacking libstdc++6-armel-cross (11.2.0-9cross1) ... Selecting previously unselected package libubsan1-armel-cross. Preparing to unpack .../038-libubsan1-armel-cross_11.2.0-9cross1_all.deb ... Unpacking libubsan1-armel-cross (11.2.0-9cross1) ... Selecting previously unselected package libgcc-11-dev-armel-cross. Preparing to unpack .../039-libgcc-11-dev-armel-cross_11.2.0-9cross1_all.deb ... Unpacking libgcc-11-dev-armel-cross (11.2.0-9cross1) ... Selecting previously unselected package gcc-11-arm-linux-gnueabi. Preparing to unpack .../040-gcc-11-arm-linux-gnueabi_11.2.0-9cross1_amd64.deb ... Unpacking gcc-11-arm-linux-gnueabi (11.2.0-9cross1) ... Selecting previously unselected package gcc-arm-linux-gnueabi. Preparing to unpack .../041-gcc-arm-linux-gnueabi_4%3a11.2.0-2_amd64.deb ... Unpacking gcc-arm-linux-gnueabi (4:11.2.0-2) ... Selecting previously unselected package linux-libc-dev-armel-cross. Preparing to unpack .../042-linux-libc-dev-armel-cross_5.10.46-4cross4_all.deb ... Unpacking linux-libc-dev-armel-cross (5.10.46-4cross4) ... Selecting previously unselected package libc6-dev-armel-cross. Preparing to unpack .../043-libc6-dev-armel-cross_2.32-1cross4_all.deb ... Unpacking libc6-dev-armel-cross (2.32-1cross4) ... Selecting previously unselected package libstdc++-11-dev-armel-cross. Preparing to unpack .../044-libstdc++-11-dev-armel-cross_11.2.0-9cross1_all.deb ... Unpacking libstdc++-11-dev-armel-cross (11.2.0-9cross1) ... Selecting previously unselected package g++-11-arm-linux-gnueabi. Preparing to unpack .../045-g++-11-arm-linux-gnueabi_11.2.0-9cross1_amd64.deb ... Unpacking g++-11-arm-linux-gnueabi (11.2.0-9cross1) ... Selecting previously unselected package g++-arm-linux-gnueabi. Preparing to unpack .../046-g++-arm-linux-gnueabi_4%3a11.2.0-2_amd64.deb ... Unpacking g++-arm-linux-gnueabi (4:11.2.0-2) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../047-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../048-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../049-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../050-libxml2_2.9.12+dfsg-5_amd64.deb ... Unpacking libxml2:amd64 (2.9.12+dfsg-5) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../051-libxml-namespacesupport-perl_1.12-1.1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1.1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../052-libxml-sax-base-perl_1.09-1.1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1.1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../053-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../054-libxml-libxml-perl_2.0134+dfsg-2+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../055-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../056-libyaml-perl_1.30-1_all.deb ... Unpacking libyaml-perl (1.30-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../057-libconfig-auto-perl_0.44-1.1_all.deb ... Unpacking libconfig-auto-perl (0.44-1.1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../058-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../059-libfile-homedir-perl_1.006-1_all.deb ... Unpacking libfile-homedir-perl (1.006-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../060-libdebian-dpkgcross-perl_2.6.18+nmu2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.18+nmu2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../061-dpkg-cross_2.6.18+nmu2_all.deb ... Unpacking dpkg-cross (2.6.18+nmu2) ... Selecting previously unselected package crossbuild-essential-armel. Preparing to unpack .../062-crossbuild-essential-armel_12.9_all.deb ... Unpacking crossbuild-essential-armel (12.9) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../063-libdebhelper-perl_13.5.2_all.deb ... Unpacking libdebhelper-perl (13.5.2) ... Selecting previously unselected package libtool. Preparing to unpack .../064-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../065-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../066-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../067-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../068-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../069-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../070-libelf1_0.185-2_amd64.deb ... Unpacking libelf1:amd64 (0.185-2) ... Selecting previously unselected package dwz. Preparing to unpack .../071-dwz_0.14-1_amd64.deb ... Unpacking dwz (0.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../072-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../073-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../074-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../075-debhelper_13.5.2_all.deb ... Unpacking debhelper (13.5.2) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../076-python3-lib2to3_3.9.7-1_all.deb ... Unpacking python3-lib2to3 (3.9.7-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../077-python3-distutils_3.9.7-1_all.deb ... Unpacking python3-distutils (3.9.7-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../078-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package libgcc-s1:armel. Preparing to unpack .../079-libgcc-s1_11.2.0-9_armel.deb ... Unpacking libgcc-s1:armel (11.2.0-9) ... Selecting previously unselected package libc6:armel. Preparing to unpack .../080-libc6_2.32-4_armel.deb ... Unpacking libc6:armel (2.32-4) ... Selecting previously unselected package libbz2-1.0:armel. Preparing to unpack .../081-libbz2-1.0_1.0.8-4_armel.deb ... Unpacking libbz2-1.0:armel (1.0.8-4) ... Selecting previously unselected package libbrotli1:armel. Preparing to unpack .../082-libbrotli1_1.0.9-2+b2_armel.deb ... Unpacking libbrotli1:armel (1.0.9-2+b2) ... Selecting previously unselected package libgmp10:armel. Preparing to unpack .../083-libgmp10_2%3a6.2.1+dfsg-2_armel.deb ... Unpacking libgmp10:armel (2:6.2.1+dfsg-2) ... Selecting previously unselected package libnettle8:armel. Preparing to unpack .../084-libnettle8_3.7.3-1_armel.deb ... Unpacking libnettle8:armel (3.7.3-1) ... Selecting previously unselected package libhogweed6:armel. Preparing to unpack .../085-libhogweed6_3.7.3-1_armel.deb ... Unpacking libhogweed6:armel (3.7.3-1) ... Selecting previously unselected package libunistring2:armel. Preparing to unpack .../086-libunistring2_0.9.10-6_armel.deb ... Unpacking libunistring2:armel (0.9.10-6) ... Selecting previously unselected package libidn2-0:armel. Preparing to unpack .../087-libidn2-0_2.3.2-2_armel.deb ... Unpacking libidn2-0:armel (2.3.2-2) ... Selecting previously unselected package libffi8:armel. Preparing to unpack .../088-libffi8_3.4.2-3_armel.deb ... Unpacking libffi8:armel (3.4.2-3) ... Selecting previously unselected package libp11-kit0:armel. Preparing to unpack .../089-libp11-kit0_0.24.0-5_armel.deb ... Unpacking libp11-kit0:armel (0.24.0-5) ... Selecting previously unselected package libtasn1-6:armel. Preparing to unpack .../090-libtasn1-6_4.17.0-2_armel.deb ... Unpacking libtasn1-6:armel (4.17.0-2) ... Selecting previously unselected package libgnutls30:armel. Preparing to unpack .../091-libgnutls30_3.7.2-2_armel.deb ... Unpacking libgnutls30:armel (3.7.2-2) ... Selecting previously unselected package libcom-err2:armel. Preparing to unpack .../092-libcom-err2_1.46.4-1_armel.deb ... Unpacking libcom-err2:armel (1.46.4-1) ... Selecting previously unselected package libkrb5support0:armel. Preparing to unpack .../093-libkrb5support0_1.18.3-7_armel.deb ... Unpacking libkrb5support0:armel (1.18.3-7) ... Selecting previously unselected package libk5crypto3:armel. Preparing to unpack .../094-libk5crypto3_1.18.3-7_armel.deb ... Unpacking libk5crypto3:armel (1.18.3-7) ... Selecting previously unselected package libkeyutils1:armel. Preparing to unpack .../095-libkeyutils1_1.6.1-2_armel.deb ... Unpacking libkeyutils1:armel (1.6.1-2) ... Selecting previously unselected package libssl1.1:armel. Preparing to unpack .../096-libssl1.1_1.1.1l-1_armel.deb ... Unpacking libssl1.1:armel (1.1.1l-1) ... Selecting previously unselected package libkrb5-3:armel. Preparing to unpack .../097-libkrb5-3_1.18.3-7_armel.deb ... Unpacking libkrb5-3:armel (1.18.3-7) ... Selecting previously unselected package libgssapi-krb5-2:armel. Preparing to unpack .../098-libgssapi-krb5-2_1.18.3-7_armel.deb ... Unpacking libgssapi-krb5-2:armel (1.18.3-7) ... Selecting previously unselected package libdb5.3:armel. Preparing to unpack .../099-libdb5.3_5.3.28+dfsg1-0.8_armel.deb ... Unpacking libdb5.3:armel (5.3.28+dfsg1-0.8) ... Selecting previously unselected package libsasl2-modules-db:armel. Preparing to unpack .../100-libsasl2-modules-db_2.1.27+dfsg-2.1_armel.deb ... Unpacking libsasl2-modules-db:armel (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:armel. Preparing to unpack .../101-libsasl2-2_2.1.27+dfsg-2.1_armel.deb ... Unpacking libsasl2-2:armel (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:armel. Preparing to unpack .../102-libldap-2.4-2_2.4.59+dfsg-1_armel.deb ... Unpacking libldap-2.4-2:armel (2.4.59+dfsg-1) ... Selecting previously unselected package libnghttp2-14:armel. Preparing to unpack .../103-libnghttp2-14_1.43.0-1_armel.deb ... Unpacking libnghttp2-14:armel (1.43.0-1) ... Selecting previously unselected package libpsl5:armel. Preparing to unpack .../104-libpsl5_0.21.0-1.2_armel.deb ... Unpacking libpsl5:armel (0.21.0-1.2) ... Selecting previously unselected package zlib1g:armel. Preparing to unpack .../105-zlib1g_1%3a1.2.11.dfsg-2_armel.deb ... Unpacking zlib1g:armel (1:1.2.11.dfsg-2) ... Selecting previously unselected package librtmp1:armel. Preparing to unpack .../106-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armel.deb ... Unpacking librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armel. Preparing to unpack .../107-libssh2-1_1.10.0-2_armel.deb ... Unpacking libssh2-1:armel (1.10.0-2) ... Selecting previously unselected package libcurl3-gnutls:armel. Preparing to unpack .../108-libcurl3-gnutls_7.74.0-1.3+b1_armel.deb ... Unpacking libcurl3-gnutls:armel (7.74.0-1.3+b1) ... Selecting previously unselected package libdeflate0:armel. Preparing to unpack .../109-libdeflate0_1.8-1_armel.deb ... Unpacking libdeflate0:armel (1.8-1) ... Selecting previously unselected package libhtscodecs2:armel. Preparing to unpack .../110-libhtscodecs2_1.1.1-3+b1_armel.deb ... Unpacking libhtscodecs2:armel (1.1.1-3+b1) ... Selecting previously unselected package liblzma5:armel. Preparing to unpack .../111-liblzma5_5.2.5-2_armel.deb ... Unpacking liblzma5:armel (5.2.5-2) ... Selecting previously unselected package libhts3:armel. Preparing to unpack .../112-libhts3_1.13+ds-2_armel.deb ... Unpacking libhts3:armel (1.13+ds-2) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../113-libstdc++6_11.2.0-9_armel.deb ... Unpacking libstdc++6:armel (11.2.0-9) ... Selecting previously unselected package libjellyfish-2.0-2:armel. Preparing to unpack .../114-libjellyfish-2.0-2_2.3.0-12_armel.deb ... Unpacking libjellyfish-2.0-2:armel (2.3.0-12) ... Selecting previously unselected package jellyfish:armel. Preparing to unpack .../115-jellyfish_2.3.0-12_armel.deb ... Unpacking jellyfish:armel (2.3.0-12) ... Selecting previously unselected package libasan5:armel. Preparing to unpack .../116-libasan5_9.4.0-3_armel.deb ... Unpacking libasan5:armel (9.4.0-3) ... Selecting previously unselected package libatomic1:armel. Preparing to unpack .../117-libatomic1_11.2.0-9_armel.deb ... Unpacking libatomic1:armel (11.2.0-9) ... Selecting previously unselected package linux-libc-dev:armel. Preparing to unpack .../118-linux-libc-dev_5.14.12-1_armel.deb ... Unpacking linux-libc-dev:armel (5.14.12-1) ... Selecting previously unselected package libcrypt1:armel. Preparing to unpack .../119-libcrypt1_1%3a4.4.25-2_armel.deb ... Unpacking libcrypt1:armel (1:4.4.25-2) ... Selecting previously unselected package libcrypt-dev:armel. Preparing to unpack .../120-libcrypt-dev_1%3a4.4.25-2_armel.deb ... Unpacking libcrypt-dev:armel (1:4.4.25-2) ... Selecting previously unselected package libtirpc3:armel. Preparing to unpack .../121-libtirpc3_1.3.2-2_armel.deb ... Unpacking libtirpc3:armel (1.3.2-2) ... Selecting previously unselected package libnsl2:armel. Preparing to unpack .../122-libnsl2_1.3.0-2_armel.deb ... Unpacking libnsl2:armel (1.3.0-2) ... Selecting previously unselected package libtirpc-dev:armel. Preparing to unpack .../123-libtirpc-dev_1.3.2-2_armel.deb ... Unpacking libtirpc-dev:armel (1.3.2-2) ... Selecting previously unselected package libnsl-dev:armel. Preparing to unpack .../124-libnsl-dev_1.3.0-2_armel.deb ... Unpacking libnsl-dev:armel (1.3.0-2) ... Selecting previously unselected package libc6-dev:armel. Preparing to unpack .../125-libc6-dev_2.32-4_armel.deb ... Unpacking libc6-dev:armel (2.32-4) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../126-libgomp1_11.2.0-9_armel.deb ... Unpacking libgomp1:armel (11.2.0-9) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../127-libubsan1_11.2.0-9_armel.deb ... Unpacking libubsan1:armel (11.2.0-9) ... Selecting previously unselected package libgcc-9-dev:armel. Preparing to unpack .../128-libgcc-9-dev_9.4.0-3_armel.deb ... Unpacking libgcc-9-dev:armel (9.4.0-3) ... Selecting previously unselected package libstdc++-9-dev:armel. Preparing to unpack .../129-libstdc++-9-dev_9.4.0-3_armel.deb ... Unpacking libstdc++-9-dev:armel (9.4.0-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../130-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up gcc-11-base:armel (11.2.0-9) ... Setting up binutils-arm-linux-gnueabi (2.37-7) ... Setting up gcc-11-arm-linux-gnueabi-base:amd64 (11.2.0-9cross1) ... Setting up bsdextrautils (2.37.2-3) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up cpp-11-arm-linux-gnueabi (11.2.0-9cross1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up perl-modules-5.32 (5.32.1-6) ... Setting up libsqlite3-0:amd64 (3.36.0-2) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:armel (5.14.12-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up linux-libc-dev-armel-cross (5.10.46-4cross4) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up cpp-arm-linux-gnueabi (4:11.2.0-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up libc6-armel-cross (2.32-1cross4) ... Setting up gcc-11-cross-base (11.2.0-9cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.25-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libc6-dev:amd64 (2.32-4) ... Setting up libc6-dev-armel-cross (2.32-1cross4) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libpython3.9-stdlib:amd64 (3.9.7-4) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up gcc-9-base:armel (9.4.0-3) ... Setting up gettext (0.21-4) ... Setting up libgomp1-armel-cross (11.2.0-9cross1) ... Setting up libtool (2.4.6-15) ... Setting up libgcc-s1-armel-cross (11.2.0-9cross1) ... Setting up m4 (1.4.18-5) ... Setting up libstdc++6-armel-cross (11.2.0-9cross1) ... Setting up libatomic1-armel-cross (11.2.0-9cross1) ... Setting up perl (5.32.1-6) ... Setting up libubsan1-armel-cross (11.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up autoconf (2.71-2) ... Setting up libstdc++-11-dev:amd64 (11.2.0-9) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up libsub-override-perl (0.09-2) ... Setting up python3.9 (3.9.7-4) ... Setting up libasan6-armel-cross (11.2.0-9cross1) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up libgcc-11-dev-armel-cross (11.2.0-9cross1) ... Setting up g++-11 (11.2.0-9) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.2) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up python3 (3.9.2-3) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up g++ (4:11.2.0-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libstdc++-11-dev-armel-cross (11.2.0-9cross1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up python3-lib2to3 (3.9.7-1) ... Setting up python3-distutils (3.9.7-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gcc-11-arm-linux-gnueabi (11.2.0-9cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-11-arm-linux-gnueabi (11.2.0-9cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up gcc-arm-linux-gnueabi (4:11.2.0-2) ... Setting up debhelper (13.5.2) ... Setting up g++-arm-linux-gnueabi (4:11.2.0-2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-armel (12.9) ... Setting up libgcc-s1:armel (11.2.0-9) ... Setting up libc6:armel (2.32-4) ... Setting up libffi8:armel (3.4.2-3) ... Setting up libtasn1-6:armel (4.17.0-2) ... Setting up libbz2-1.0:armel (1.0.8-4) ... Setting up libdb5.3:armel (5.3.28+dfsg1-0.8) ... Setting up libstdc++6:armel (11.2.0-9) ... Setting up libhtscodecs2:armel (1.1.1-3+b1) ... Setting up libkeyutils1:armel (1.6.1-2) ... Setting up liblzma5:armel (5.2.5-2) ... Setting up libssl1.1:armel (1.1.1l-1) ... Setting up libbrotli1:armel (1.0.9-2+b2) ... Setting up libnghttp2-14:armel (1.43.0-1) ... Setting up libunistring2:armel (0.9.10-6) ... Setting up libdeflate0:armel (1.8-1) ... Setting up zlib1g:armel (1:1.2.11.dfsg-2) ... Setting up libcrypt1:armel (1:4.4.25-2) ... Setting up libidn2-0:armel (2.3.2-2) ... Setting up libcom-err2:armel (1.46.4-1) ... Setting up libgomp1:armel (11.2.0-9) ... Setting up libkrb5support0:armel (1.18.3-7) ... Setting up libsasl2-modules-db:armel (2.1.27+dfsg-2.1) ... Setting up libjellyfish-2.0-2:armel (2.3.0-12) ... Setting up libasan5:armel (9.4.0-3) ... Setting up libnettle8:armel (3.7.3-1) ... Setting up libgmp10:armel (2:6.2.1+dfsg-2) ... Setting up libp11-kit0:armel (0.24.0-5) ... Setting up libatomic1:armel (11.2.0-9) ... Setting up libk5crypto3:armel (1.18.3-7) ... Setting up libsasl2-2:armel (2.1.27+dfsg-2.1) ... Setting up libubsan1:armel (11.2.0-9) ... Setting up libcrypt-dev:armel (1:4.4.25-2) ... Setting up libssh2-1:armel (1.10.0-2) ... Setting up libkrb5-3:armel (1.18.3-7) ... Setting up libpsl5:armel (0.21.0-1.2) ... Setting up libhogweed6:armel (3.7.3-1) ... Setting up libgcc-9-dev:armel (9.4.0-3) ... Setting up libgnutls30:armel (3.7.2-2) ... Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:armel (1.18.3-7) ... Setting up libtirpc3:armel (1.3.2-2) ... Setting up libldap-2.4-2:armel (2.4.59+dfsg-1) ... Setting up libcurl3-gnutls:armel (7.74.0-1.3+b1) ... Setting up libtirpc-dev:armel (1.3.2-2) ... Setting up libnsl2:armel (1.3.0-2) ... Setting up libhts3:armel (1.13+ds-2) ... Setting up jellyfish:armel (2.3.0-12) ... Setting up libnsl-dev:armel (1.3.0-2) ... Setting up libc6-dev:armel (2.32-4) ... Setting up libstdc++-9-dev:armel (9.4.0-3) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-9 gcc-11_11.2.0-9 libc6-dev_2.32-4 libstdc++-11-dev_11.2.0-9 libstdc++-11-dev-armel-cross_11.2.0-9cross1 libstdc++-9-dev_9.4.0-3 libstdc++6_11.2.0-9 libstdc++6-armel-cross_11.2.0-9cross1 linux-libc-dev_5.14.12-1 Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 binutils_2.37-7 binutils-arm-linux-gnueabi_2.37-7 binutils-common_2.37-7 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-3 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:11.2.0-2 cpp-11_11.2.0-9 cpp-11-arm-linux-gnueabi_11.2.0-9cross1 cpp-8_8.4.0-7 cpp-arm-linux-gnueabi_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-armel_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-python_4.20201102+nmu1 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.26-1 fdisk_2.37.2-3 file_1:5.39-3 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-9 g++-11-arm-linux-gnueabi_11.2.0-9cross1 g++-arm-linux-gnueabi_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-11 gcc-11_11.2.0-9 gcc-11-arm-linux-gnueabi_11.2.0-9cross1 gcc-11-arm-linux-gnueabi-base_11.2.0-9cross1 gcc-11-base_11.2.0-9 gcc-11-cross-base_11.2.0-9cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-3 gcc-arm-linux-gnueabi_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 jellyfish_2.3.0-12 libacl1_2.3.1-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan5_9.4.0-3 libasan6_11.2.0-9 libasan6-armel-cross_11.2.0-9cross1 libatomic1_11.2.0-9 libatomic1-armel-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-7 libblkid1_2.37.2-3 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-armel-cross_2.32-1cross4 libc6-dev_2.32-4 libc6-dev-armel-cross_2.32-1cross4 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-9 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libcurl3-gnutls_7.74.0-1.3+b1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdebian-dpkgcross-perl_2.6.18+nmu2 libdeflate0_1.8-1 libdpkg-perl_1.20.9 libelf1_0.185-2 libexpat1_2.4.1-2+b1 libext2fs2_1.46.4-1 libfakeroot_1.26-1 libfdisk1_2.37.2-3 libffi6_3.2.1-9 libffi8_3.4.2-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libgcc-11-dev_11.2.0-9 libgcc-11-dev-armel-cross_11.2.0-9cross1 libgcc-9-dev_9.4.0-3 libgcc-s1_11.2.0-9 libgcc-s1-armel-cross_11.2.0-9cross1 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-9 libgomp1-armel-cross_11.2.0-9cross1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.3-1 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3+b1 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.24-2 libitm1_11.2.0-9 libjellyfish-2.0-2_2.3.0-12 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-9 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-3 libmpc3_1.2.1-1 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncursesw6_6.2+20210905-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.2-3 libpython3.9-minimal_3.9.7-4 libpython3.9-stdlib_3.9.7-4 libquadmath0_11.2.0-9 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-3 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-9 libstdc++-11-dev-armel-cross_11.2.0-9cross1 libstdc++-9-dev_9.4.0-3 libstdc++6_11.2.0-9 libstdc++6-armel-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_249.5-1 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-9 libubsan1_11.2.0-9 libubsan1-armel-cross_11.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_249.5-1 libunistring2_0.9.10-6 libuuid1_2.37.2-3 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.14.12-1 linux-libc-dev-armel-cross_5.10.46-4cross4 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mount_2.37.2-3 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-6 po-debconf_1.0.21+nmu1 python3_3.9.2-3 python3-distutils_3.9.7-1 python3-lib2to3_3.9.7-1 python3-minimal_3.9.2-3 python3.9_3.9.7-4 python3.9-minimal_3.9.7-4 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021c-2 ucf_3.0043 util-linux_2.37.2-3 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: centrifuge Binary: centrifuge Architecture: any Version: 1.0.3-9 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://ccb.jhu.edu/software/centrifuge/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/centrifuge Vcs-Git: https://salsa.debian.org/med-team/centrifuge.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, jellyfish Package-List: centrifuge deb science optional arch=any Checksums-Sha1: c31fc38298b74f5b81f1d3704f7c4311231d6bc0 701273 centrifuge_1.0.3.orig.tar.gz e20e982238586dbb811acb28501283c51535c666 14632 centrifuge_1.0.3-9.debian.tar.xz Checksums-Sha256: 71340f5c0c20dd4f7c4d98ea87f9edcbb1443fff8434e816a5465cbebaca9343 701273 centrifuge_1.0.3.orig.tar.gz 642588cc4ad931da4bba7b6a66cc7e7c1889bcbe2fe4570c5ef5b8c4cd094555 14632 centrifuge_1.0.3-9.debian.tar.xz Files: 4ab20730ae43f26a98b754d83213e10c 701273 centrifuge_1.0.3.orig.tar.gz c7daefc7f6c1acd4689ef13f465f2419 14632 centrifuge_1.0.3-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFlMlcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE6qA//TxnnEgb26K9ySkAoA6hhxQ4Dc+VVNVpp tvUanhKk5pfNFk2PP6ncrkSYpa1+MEXxh3k5dmnO5fL6zGs6Njq7kW/N+l7G6cvP jr3zsp2jXhhDnkhmIqZT1HdCrkJNuSgZkSUQnwcn7uAGHb/vfRnS9AZ3QiW5RKyN pBHqRV+68XonmHBOBeU5NA7Zx9Uz6SIM+Pj/Fwu749mQPoUDos4ZPUqTCcIAi9Ce DXYysrWWbLL+baAYDI8oxpzQ9Z81Q28kzTbyVFc6/vXSmnwFgAXBfCcvZrQksOk7 I8pW7CxCq9jnQA0awcDLb5XyRu09DbuGY2cuevLdKWvXOm7V4iqnP5brJJG9+h7X rb00zmLHAKua5RjWikNvATwCH75jRBJqs0YJzFdcv6Lu5M/gVvdSCq8GlPIA5uJS XEEtntz5vHApMBFG8e/PsN0/U1PagOFGM+Yhcpvbk0IsRsqSvvg8b+q9kimy6BuC 16nEyKlsDbf+4X4oOI/ceDqvcObmVUpBHJGFiHsEwW+Jlv3U5bLLykrKuUr09ysc WNfj7USrotf08Xp0xFhxU9mfVD8YF0Dp/zybqH7dh9A0CyLvsrBG+jFVxfz6XJTf M2eQ+wOSn5dDl+X5OYzWSyBwi0hCFzW1wKlhyWQ/nkTbEGXsDfknWHPTrEO7gDMe DZTPlu2GrYk= =nawx -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.4mOFdyf1/trustedkeys.kbx': General error gpgv: Signature made Tue Oct 12 06:59:35 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./centrifuge_1.0.3-9.dsc dpkg-source: info: extracting centrifuge in /<> dpkg-source: info: unpacking centrifuge_1.0.3.orig.tar.gz dpkg-source: info: unpacking centrifuge_1.0.3-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_auto_ptr_usage_in_gcc-7.patch dpkg-source: info: applying 0002-Fix-build-with-rank.patch dpkg-source: info: applying 0003-Fix-make-install-DESTDIR.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying no_msse2.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix_arm_build.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-1f8c43ad-8ce7-421c-bcd9-dc17d631474b SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package centrifuge dpkg-buildpackage: info: source version 1.0.3-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean --with python3 dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f centrifuge-build-bin centrifuge-class centrifuge-inspect-bin centrifuge-build-bin-debug centrifuge-class-debug centrifuge-inspect-bin-debug \ centrifuge-build-bin.exe centrifuge-class.exe centrifuge-inspect-bin.exe centrifuge-build-bin-debug.exe centrifuge-class-debug.exe centrifuge-inspect-bin-debug.exe \ centrifuge-src.zip centrifuge-bin.zip rm -f core.* .tmp.head rm -rf *.dSYM make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- BITS=32 BITS_FLAG= make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc BITS=32 BITS_FLAG= make[2]: Entering directory '/<>' arm-linux-gnueabi-g++ -O3 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -funroll-loops -g3 \"" \ -fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`arm-linux-gnueabi-g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBOWTIE_MM -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ \ -o centrifuge-build-bin centrifuge_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp diff_sample.cpp centrifuge_build_main.cpp \ -lpthread In file included from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge_build.cpp:27: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from bt2_idx.h:44, from centrifuge_build.cpp:27: blockwise_sa.h: In function ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 490 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 491 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = S2bDnaString]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge_build.cpp:27: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ In file included from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge_build.cpp:27: multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:15: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge_build.cpp:27: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ In file included from centrifuge_build.cpp:27: bt2_idx.h: In instantiation of ‘void Ebwt::buildToDisk(InorderBlockwiseSA&, const TStr&, std::ostream&, std::ostream&, std::ostream*, std::ostream*, const EList&, int) [with TStr = SString; index_t = long long unsigned int; std::ostream = std::basic_ostream]’: bt2_idx.h:1492:16: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here bt2_idx.h:3452:41: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 3452 | for(size_t k = 0; k < kmer_size; k++) { | ~~^~~~~~~~~~~ bt2_idx.h:3641:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 3641 | for(size_t k = 0; k < kmer_size; k++) { | ~~^~~~~~~~~~~ bt2_idx.h: In instantiation of ‘void Ebwt::buildToDisk(InorderBlockwiseSA&, const TStr&, std::ostream&, std::ostream&, std::ostream*, std::ostream*, const EList&, int) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ostream = std::basic_ostream]’: bt2_idx.h:1492:16: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:697:25: required from here bt2_idx.h:3452:41: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 3452 | for(size_t k = 0; k < kmer_size; k++) { | ~~^~~~~~~~~~~ bt2_idx.h:3641:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 3641 | for(size_t k = 0; k < kmer_size; k++) { | ~~^~~~~~~~~~~ In file included from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge_build.cpp:27: diff_sample.h: In instantiation of ‘void DifferenceCoverSample::build(int) [with TStr = SString]’: blockwise_sa.h:383:20: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here diff_sample.h:813:43: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 813 | sanityCheckOrderedSufs(t, t.length(), sPrimeArr, sPrimeSz, v); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diff_sample.h:813:43: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] diff_sample.h: In instantiation of ‘void DifferenceCoverSample::build(int) [with TStr = S2bDnaString]’: blockwise_sa.h:383:20: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = S2bDnaString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = S2bDnaString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = S2bDnaString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:697:25: required from here diff_sample.h:813:43: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] diff_sample.h:813:43: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge_build.cpp:27: multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf2(const T&, TIndexOffU*, size_t, TIndexOffU*, int, bool, bool, size_t, EList*) [with T = SString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: diff_sample.h:772:30: required from ‘void DifferenceCoverSample::build(int) [with TStr = SString]’ blockwise_sa.h:383:20: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here multikey_qsort.h:661:39: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 661 | sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from bt2_idx.h:44, from centrifuge_build.cpp:27: blockwise_sa.h: In instantiation of ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = SString]’: blockwise_sa.h:607:9: required from ‘void KarkkainenBlockwiseSA::buildSamples() [with TStr = SString]’ blockwise_sa.h:388:4: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here blockwise_sa.h:460:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 460 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 461 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h:460:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge_build.cpp:27: multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf2(const T&, TIndexOffU*, size_t, TIndexOffU*, int, bool, bool, size_t, EList*) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: diff_sample.h:772:30: required from ‘void DifferenceCoverSample::build(int) [with TStr = S2bDnaString]’ blockwise_sa.h:383:20: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = S2bDnaString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = S2bDnaString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = S2bDnaString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:697:25: required from here multikey_qsort.h:661:39: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 661 | sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge_build.cpp:27: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:454:19: required from ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = SString]’ blockwise_sa.h:607:9: required from ‘void KarkkainenBlockwiseSA::buildSamples() [with TStr = SString]’ blockwise_sa.h:388:4: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ In file included from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge_build.cpp:27: multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = SString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:460:15: required from ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = SString]’ blockwise_sa.h:607:9: required from ‘void KarkkainenBlockwiseSA::buildSamples() [with TStr = SString]’ blockwise_sa.h:388:4: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge_build.cpp:27: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:454:19: required from ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = SString]’ blockwise_sa.h:607:9: required from ‘void KarkkainenBlockwiseSA::buildSamples() [with TStr = SString]’ blockwise_sa.h:388:4: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:454:19: required from ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = SString]’ blockwise_sa.h:607:9: required from ‘void KarkkainenBlockwiseSA::buildSamples() [with TStr = SString]’ blockwise_sa.h:388:4: required from ‘void KarkkainenBlockwiseSA::build() [with TStr = SString]’ blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = SString; T2 = const unsigned char*; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:454:19: required from ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = SString]’ blockwise_sa.h:607:9: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] blockwise_sa.h:362:4: required from ‘void KarkkainenBlockwiseSA::reset() [with TStr = SString]’ blockwise_sa.h:215:29: required from ‘KarkkainenBlockwiseSA::KarkkainenBlockwiseSA(const TStr&, TIndexOffU, int, uint32_t, uint32_t, bool, bool, bool, std::string, std::ostream&) [with TStr = SString; TIndexOffU = long long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ bt2_idx.h:1488:33: required from ‘void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ bt2_idx.h:881:23: required from ‘Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ centrifuge_build.cpp:472:19: required from ‘void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]’ centrifuge_build.cpp:677:28: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ In file included from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from bt2_idx.h:44, from bt2_idx.cpp:25: blockwise_sa.h: In function ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 490 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 491 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = S2bDnaString]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ In file included from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:15: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ In file included from diff_sample.cpp:20: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ arm-linux-gnueabi-g++ -O3 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -funroll-loops -g3 \"" \ -fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`arm-linux-gnueabi-g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBOWTIE_MM -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ \ -o centrifuge-class centrifuge.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp qual.cpp pat.cpp read_qseq.cpp ref_coord.cpp mask.cpp pe.cpp aligner_seed_policy.cpp scoring.cpp presets.cpp simple_func.cpp random_util.cpp outq.cpp centrifuge_main.cpp \ -lpthread In file included from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge.cpp:34: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from bt2_idx.h:44, from centrifuge.cpp:34: blockwise_sa.h: In function ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 490 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 491 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = S2bDnaString]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge.cpp:34: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ In file included from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge.cpp:34: multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:15: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from centrifuge.cpp:47: classifier.h: In instantiation of ‘int Classifier::go(const Scoring&, const Ebwt&, const Ebwt&, const BitPairReference&, WalkMetrics&, PerReadMetrics&, HIMetrics&, SpeciesMetrics&, RandomSource&, AlnSinkWrap&) [with index_t = long long unsigned int; local_index_t = short unsigned int]’: centrifuge.cpp:2660:34: required from here classifier.h:411:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 411 | if(i + 1 < _hitMap.size()) { | ~~~~~~^~~~~~~~~~~~~~~~ classifier.h:432:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 432 | if(_hitMap[i].rank + 1 >= _hitMap[i].path.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ classifier.h:442:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 442 | uint64_t parent_taxID = (rank + 1 >= _hitMap[i].path.size() ? 1 : _hitMap[i].path[rank + 1]); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ classifier.h:475:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 475 | uint64_t cur_parent_taxID = (rank + 1 >= _hitMap[i].path.size() ? 1 : _hitMap[i].path[rank + 1]); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge.cpp:34: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ In file included from centrifuge.cpp:47: classifier.h: In instantiation of ‘void Classifier::searchForwardAndReverse(index_t, const Ebwt&, const Scoring&, RandomSource&, const ReportingParams&, index_t) [with index_t = long long unsigned int; local_index_t = short unsigned int]’: classifier.h:238:13: required from ‘int Classifier::go(const Scoring&, const Ebwt&, const Ebwt&, const BitPairReference&, WalkMetrics&, PerReadMetrics&, HIMetrics&, SpeciesMetrics&, RandomSource&, AlnSinkWrap&) [with index_t = long long unsigned int; local_index_t = short unsigned int]’ centrifuge.cpp:2660:34: required from here classifier.h:850:50: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘const THitInt’ {aka ‘const long long int’} [-Wsign-compare] 850 | hit.size() + rchit.size() > rp.ihits) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ classifier.h:647:16: warning: variable ‘cur’ set but not used [-Wunused-but-set-variable] 647 | size_t cur[2] = {0, 0} ; | ^~~ In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge.cpp:34: multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ In file included from centrifuge.cpp:41: aln_sink.h: In instantiation of ‘void AlnSinkSam::appendMate(Ebwt&, BTString&, const Read&, const Read*, TReadId, AlnRes*, AlnRes*, const AlnSetSumm&, const PerReadMetrics&, SpeciesMetrics&, size_t) [with index_t = long long unsigned int; BTString = SStringExpandable; TReadId = long long unsigned int; size_t = unsigned int]’: aln_sink.h:1407:9: required from ‘void AlnSinkSam::append(BTString&, size_t, const Read*, const Read*, TReadId, AlnRes*, AlnRes*, const AlnSetSumm&, const PerReadMetrics&, SpeciesMetrics&, bool, size_t) [with index_t = long long unsigned int; BTString = SStringExpandable; size_t = unsigned int; TReadId = long long unsigned int]’ aln_sink.h:1392:15: required from here aln_sink.h:2302:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2302 | for (int i=0; i < this->tab_fmt_cols_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from bt2_idx.h:44, from bt2_idx.cpp:25: blockwise_sa.h: In function ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 490 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 491 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = S2bDnaString]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ In file included from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:15: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ arm-linux-gnueabi-g++ -O3 -funroll-loops -g3 \ -DCOMPILER_OPTIONS="\"-O3 -funroll-loops -g3 \"" \ -fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`arm-linux-gnueabi-g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBOWTIE_MM -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -Wall \ -I . \ -o centrifuge-inspect-bin centrifuge_inspect.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp \ -lpthread In file included from blockwise_sa.h:29, from bt2_idx.h:44, from hier_idx.h:24, from centrifuge_inspect.cpp:28: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from bt2_idx.h:44, from hier_idx.h:24, from centrifuge_inspect.cpp:28: blockwise_sa.h: In function ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 490 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 491 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = S2bDnaString]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from hier_idx.h:24, from centrifuge_inspect.cpp:28: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ In file included from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from hier_idx.h:24, from centrifuge_inspect.cpp:28: multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:15: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from hier_idx.h:24, from centrifuge_inspect.cpp:28: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/set:60, from centrifuge_inspect.cpp:24: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/map:61, from bt2_idx.h:34, from hier_idx.h:24, from centrifuge_inspect.cpp:28: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_map.h: In constructor ‘Ebwt::Ebwt(const string&, int, int, bool, int32_t, int32_t, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool, bool) [with index_t = long long unsigned int]’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: diff_sample.h:175:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from bt2_idx.h:44, from bt2_idx.cpp:25: blockwise_sa.h: In function ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 490 | mkeyQSortSuf(t, s, slen, 4, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 491 | this->verbose(), this->sanityCheck()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::qsort(EList&) [with TStr = S2bDnaString]’: blockwise_sa.h:490:29: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:70: note: in expansion of macro ‘OFF_MASK’ 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ^~~~~~~~ In file included from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 764 | if(sanityCheck) sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multikey_qsort.h:764:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] multikey_qsort.h: In instantiation of ‘void mkeyQSortSuf(const T&, TIndexOffU*, size_t, int, bool, bool, size_t) [with T = S2bDnaString; TIndexOffU = long long unsigned int; size_t = unsigned int]’: blockwise_sa.h:490:15: required from here multikey_qsort.h:496:47: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 496 | if(sanityCheck) sanityCheckOrderedSufs(host, hlen, s, slen, upto); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ds.h:32, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: multikey_qsort.h: In instantiation of ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’: multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1155:70: note: in expansion of macro ‘OFF_MASK’ 1155 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1164:70: note: in expansion of macro ‘OFF_MASK’ 1164 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1066:40: note: in expansion of macro ‘OFF_MASK’ 1066 | OFF_MASK, begin, end); | ^~~~~~~~ multikey_qsort.h: In instantiation of ‘void selectionSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’: multikey_qsort.h:1062:33: required from ‘void bucketSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, uint8_t, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int; uint8_t = unsigned char]’ multikey_qsort.h:1161:20: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, size_t, size_t, size_t, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ multikey_qsort.h:763:18: required from ‘void mkeyQSortSufDcU8(const T1&, const T2&, size_t, TIndexOffU*, size_t, const DifferenceCoverSample&, int, bool, bool) [with T1 = S2bDnaString; T2 = S2bDnaString; size_t = unsigned int; TIndexOffU = long long unsigned int]’ blockwise_sa.h:484:19: required from here btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:914:31: note: in expansion of macro ‘OFF_MASK’ 914 | off = OFF_MASK; | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:923:64: note: in expansion of macro ‘OFF_MASK’ 923 | OFF_MASK, begin, end); | ^~~~~~~~ btypes.h:25:18: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 25 | #define OFF_MASK 0xffffffffffffffff | ^~~~~~~~~~~~~~~~~~ multikey_qsort.h:1007:62: note: in expansion of macro ‘OFF_MASK’ 1007 | sanityCheckOrderedSufs(host1, hlen, s, slen, OFF_MASK, begin, end); | ^~~~~~~~ make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- prefix=/usr/lib/centrifuge make -j1 install DESTDIR=/<>/debian/centrifuge AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" prefix=/usr/lib/centrifuge make[2]: Entering directory '/<>' mkdir -p /<>/debian/centrifuge/usr/lib/centrifuge/bin mkdir -p /<>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/indices install -m 0644 indices/Makefile /<>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/indices install -d -m 0755 /<>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc install -m 0644 doc/* /<>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc for file in centrifuge-build-bin centrifuge-class centrifuge-inspect-bin centrifuge centrifuge-build centrifuge-inspect centrifuge-download centrifuge-kreport centrifuge-BuildSharedSequence.pl centrifuge-RemoveEmptySequence.pl centrifuge-RemoveN.pl centrifuge-compress.pl centrifuge-sort-nt.pl; do \ install -m 0755 $file /<>/debian/centrifuge/usr/lib/centrifuge/bin ; \ done make[2]: Leaving directory '/<>' mv debian/centrifuge/usr/lib/centrifuge/bin/* debian/centrifuge/usr/lib/centrifuge/ rmdir debian/centrifuge/usr/lib/centrifuge/bin # move documentation to correct location mkdir -p debian/centrifuge/usr/share/doc/centrifuge/html mv debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc/*html \ debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc/*css \ debian/centrifuge/usr/share/doc/centrifuge/html # remove useless stuff in documentation dir rm -rf debian/centrifuge/usr/lib/centrifuge/share/doc/ make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done rm -rf debian/*/usr/lib/centrifuge/share/centrifuge/doc find debian -name manual.inc.html | xargs rm -rf make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_python3 -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/centrifuge/usr/lib/centrifuge/centrifuge-build-bin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/centrifuge/usr/lib/centrifuge/centrifuge-class contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/centrifuge/usr/lib/centrifuge/centrifuge-inspect-bin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package centrifuge: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: package centrifuge: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: Depends field of package centrifuge: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: package centrifuge: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'centrifuge' in '../centrifuge_1.0.3-9_armel.deb'. dpkg-deb: building package 'centrifuge-dbgsym' in '../centrifuge-dbgsym_1.0.3-9_armel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../centrifuge_1.0.3-9_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-15T20:05:26Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ centrifuge_1.0.3-9_armel.changes: --------------------------------- Format: 1.8 Date: Tue, 12 Oct 2021 08:43:55 +0200 Source: centrifuge Binary: centrifuge centrifuge-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 1.0.3-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: centrifuge - rapid and memory-efficient system for classification of DNA seque Changes: centrifuge (1.0.3-9) unstable; urgency=medium . * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) * Fix manpages Checksums-Sha1: 00c859e993f7df38f44ecb9fd082ac3302bb235c 3431064 centrifuge-dbgsym_1.0.3-9_armel.deb a79dd54f30c393d01ef78a896a0b795f96b49d9e 5984 centrifuge_1.0.3-9_armel.buildinfo a203aed0efbec01a138822e09b99d264a224ed57 501712 centrifuge_1.0.3-9_armel.deb Checksums-Sha256: f8d3a1fe25459b66d6212cf78c15ea2dada5060c5e4b47007e32906b42fbbe38 3431064 centrifuge-dbgsym_1.0.3-9_armel.deb 8bf05de387b2186c8d8d740099446172244cd7b2dcfa4fbff4d4d0c9fdeef24d 5984 centrifuge_1.0.3-9_armel.buildinfo c11385756901ec64aa77d807a0a0573eaf69d97c274bdbf3107e6cc7e0a33541 501712 centrifuge_1.0.3-9_armel.deb Files: 0d993ce288b4ba889fbfcf021413beaf 3431064 debug optional centrifuge-dbgsym_1.0.3-9_armel.deb 22bcddfa88f591c707868a3a4b4a8089 5984 science optional centrifuge_1.0.3-9_armel.buildinfo 7da6d23fb27373295001a2a0aa69d128 501712 science optional centrifuge_1.0.3-9_armel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: centrifuge Binary: centrifuge centrifuge-dbgsym Architecture: armel Version: 1.0.3-9 Checksums-Md5: 0d993ce288b4ba889fbfcf021413beaf 3431064 centrifuge-dbgsym_1.0.3-9_armel.deb 7da6d23fb27373295001a2a0aa69d128 501712 centrifuge_1.0.3-9_armel.deb Checksums-Sha1: 00c859e993f7df38f44ecb9fd082ac3302bb235c 3431064 centrifuge-dbgsym_1.0.3-9_armel.deb a203aed0efbec01a138822e09b99d264a224ed57 501712 centrifuge_1.0.3-9_armel.deb Checksums-Sha256: f8d3a1fe25459b66d6212cf78c15ea2dada5060c5e4b47007e32906b42fbbe38 3431064 centrifuge-dbgsym_1.0.3-9_armel.deb c11385756901ec64aa77d807a0a0573eaf69d97c274bdbf3107e6cc7e0a33541 501712 centrifuge_1.0.3-9_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 15 Oct 2021 20:05:26 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.4-2), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-3+b2), binutils (= 2.37-7), binutils-common (= 2.37-7), binutils-x86-64-linux-gnu (= 2.37-7), bsdextrautils (= 2.37.2-3), bsdutils (= 1:2.37.2-3), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-9), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.5.2), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-python (= 4.20201102+nmu1), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-9), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-9), gcc-11-base (= 11.2.0-9), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), jellyfish (= 2.3.0-12), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-9), libatomic1 (= 11.2.0-9), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1), libbinutils (= 2.37-7), libblkid1 (= 2.37.2-3), libbrotli1 (= 1.0.9-2+b2), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.32-4), libc-dev-bin (= 2.32-4), libc6 (= 2.32-4), libc6-dev (= 2.32-4), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-9), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.25-2), libcrypt1 (= 1:4.4.25-2), libctf-nobfd0 (= 2.37-7), libctf0 (= 2.37-7), libcurl3-gnutls (= 7.74.0-1.3+b1), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.5.2), libdeflate0 (= 1.8-1), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libexpat1 (= 2.4.1-2+b1), libffi8 (= 3.4.2-3), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-11-dev (= 11.2.0-9), libgcc-s1 (= 11.2.0-9), libgcrypt20 (= 1.9.4-3+b1), libgdbm-compat4 (= 1.21-1), libgdbm6 (= 1.21-1), libgmp10 (= 2:6.2.1+dfsg-2), libgnutls30 (= 3.7.2-2), libgomp1 (= 11.2.0-9), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.18.3-7), libhogweed6 (= 3.7.3-1), libhts3 (= 1.13+ds-2), libhtscodecs2 (= 1.1.1-3+b1), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.24-2), libitm1 (= 11.2.0-9), libjellyfish-2.0-2 (= 2.3.0-12), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), libldap-2.4-2 (= 2.4.59+dfsg-1), liblsan0 (= 11.2.0-9), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.37.2-3), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2), libmpfr6 (= 4.1.0-3), libncursesw6 (= 6.2+20210905-1), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.0-5), libpam-modules (= 1.4.0-10), libpam-modules-bin (= 1.4.0-10), libpam-runtime (= 1.4.0-10), libpam0g (= 1.4.0-10), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.3-1), libpsl5 (= 0.21.0-1.2), libpython3-stdlib (= 3.9.2-3), libpython3.9-minimal (= 3.9.7-4), libpython3.9-stdlib (= 3.9.7-4), libquadmath0 (= 11.2.0-9), libreadline8 (= 8.1-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2.1), libsasl2-modules-db (= 2.1.27+dfsg-2.1), libseccomp2 (= 2.5.2-2), libselinux1 (= 3.1-3), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-3), libsqlite3-0 (= 3.36.0-2), libssh2-1 (= 1.10.0-2), libssl1.1 (= 1.1.1l-1), libstdc++-11-dev (= 11.2.0-9), libstdc++6 (= 11.2.0-9), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.5-1), libtasn1-6 (= 4.17.0-2), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-9), libubsan1 (= 11.2.0-9), libuchardet0 (= 0.0.7-1), libudev1 (= 249.5-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-3), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.14.12-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), media-types (= 4.0.0), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), po-debconf (= 1.0.21+nmu1), python3 (= 3.9.2-3), python3-distutils (= 3.9.7-1), python3-lib2to3 (= 3.9.7-1), python3-minimal (= 3.9.2-3), python3.9 (= 3.9.7-4), python3.9-minimal (= 3.9.7-4), readline-common (= 8.1-2), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.00-1), tar (= 1.34+dfsg-1), tzdata (= 2021c-2), util-linux (= 2.37.2-3), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1634021035" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ centrifuge-dbgsym_1.0.3-9_armel.deb ----------------------------------- new Debian package, version 2.0. size 3431064 bytes: control archive=688 bytes. 465 bytes, 12 lines control 406 bytes, 4 lines md5sums Package: centrifuge-dbgsym Source: centrifuge Version: 1.0.3-9 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 3510 Depends: centrifuge (= 1.0.3-9) Section: debug Priority: optional Description: debug symbols for centrifuge Build-Ids: 203c14f5ac8f9bd0b6857392d9a6e70eb6b3153e a83c0e15da98f349f89aba237633d445477149ae f559c022924010900e27df077e6609189833688d drwxr-xr-x root/root 0 2021-10-12 06:43 ./ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/debug/.build-id/20/ -rw-r--r-- root/root 1553820 2021-10-12 06:43 ./usr/lib/debug/.build-id/20/3c14f5ac8f9bd0b6857392d9a6e70eb6b3153e.debug drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/debug/.build-id/a8/ -rw-r--r-- root/root 958048 2021-10-12 06:43 ./usr/lib/debug/.build-id/a8/3c0e15da98f349f89aba237633d445477149ae.debug drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/debug/.build-id/f5/ -rw-r--r-- root/root 821048 2021-10-12 06:43 ./usr/lib/debug/.build-id/f5/59c022924010900e27df077e6609189833688d.debug drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/debug/.dwz/arm-linux-gnueabi/ -rw-r--r-- root/root 245416 2021-10-12 06:43 ./usr/lib/debug/.dwz/arm-linux-gnueabi/centrifuge.debug drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/share/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-12 06:43 ./usr/share/doc/centrifuge-dbgsym -> centrifuge centrifuge_1.0.3-9_armel.deb ---------------------------- new Debian package, version 2.0. size 501712 bytes: control archive=1788 bytes. 1154 bytes, 21 lines control 2253 bytes, 30 lines md5sums Package: centrifuge Version: 1.0.3-9 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1481 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 11), python3, hisat2, jellyfish Section: science Priority: optional Homepage: https://ccb.jhu.edu/software/centrifuge/ Description: rapid and memory-efficient system for classification of DNA sequences Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers. drwxr-xr-x root/root 0 2021-10-12 06:43 ./ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/bin/ -rwxr-xr-x root/root 312 2021-10-12 06:43 ./usr/bin/centrifuge lrwxrwxrwx root/root 0 2021-10-12 06:43 ./usr/bin/centrifuge-build -> centrifuge lrwxrwxrwx root/root 0 2021-10-12 06:43 ./usr/bin/centrifuge-compress -> centrifuge lrwxrwxrwx root/root 0 2021-10-12 06:43 ./usr/bin/centrifuge-download -> centrifuge lrwxrwxrwx root/root 0 2021-10-12 06:43 ./usr/bin/centrifuge-inspect -> centrifuge drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/centrifuge/ -rwxr-xr-x root/root 19883 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge -rwxr-xr-x root/root 12126 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge-BuildSharedSequence.pl -rwxr-xr-x root/root 407 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge-RemoveEmptySequence.pl -rwxr-xr-x root/root 1007 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge-RemoveN.pl -rwxr-xr-x root/root 2312 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge-build -rwxr-xr-x root/root 406136 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge-build-bin -rwxr-xr-x root/root 545508 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge-class -rwxr-xr-x root/root 13305 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge-compress.pl -rwxr-xr-x root/root 11670 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge-download -rwxr-xr-x root/root 1868 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge-inspect -rwxr-xr-x root/root 337664 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge-inspect-bin -rwxr-xr-x root/root 5231 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge-kreport -rwxr-xr-x root/root 3214 2021-10-12 06:43 ./usr/lib/centrifuge/centrifuge-sort-nt.pl drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/centrifuge/share/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/centrifuge/share/centrifuge/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/lib/centrifuge/share/centrifuge/indices/ -rw-r--r-- root/root 12887 2021-10-12 06:43 ./usr/lib/centrifuge/share/centrifuge/indices/Makefile drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/share/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/share/doc/centrifuge/ -rw-r--r-- root/root 1189 2021-10-12 06:43 ./usr/share/doc/centrifuge/changelog.Debian.gz -rw-r--r-- root/root 1054 2021-10-12 06:43 ./usr/share/doc/centrifuge/copyright drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/share/doc/centrifuge/html/ -rw-r--r-- root/root 1234 2021-10-12 06:43 ./usr/share/doc/centrifuge/html/add.css -rw-r--r-- root/root 1158 2021-10-12 06:43 ./usr/share/doc/centrifuge/html/faq.shtml -rw-r--r-- root/root 423 2021-10-12 06:43 ./usr/share/doc/centrifuge/html/footer.inc.html -rw-r--r-- root/root 2388 2021-10-12 06:43 ./usr/share/doc/centrifuge/html/index.shtml.gz -rw-r--r-- root/root 84288 2021-10-12 06:43 ./usr/share/doc/centrifuge/html/manual.html -rw-r--r-- root/root 1068 2021-10-12 06:43 ./usr/share/doc/centrifuge/html/manual.shtml -rw-r--r-- root/root 1348 2021-10-12 06:43 ./usr/share/doc/centrifuge/html/sidebar.inc.shtml.gz -rw-r--r-- root/root 7942 2021-10-12 06:43 ./usr/share/doc/centrifuge/html/style.css drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-12 06:43 ./usr/share/man/man1/ -rw-r--r-- root/root 1204 2021-10-12 06:43 ./usr/share/man/man1/centrifuge-build.1.gz -rw-r--r-- root/root 379 2021-10-12 06:43 ./usr/share/man/man1/centrifuge-compress.1.gz -rw-r--r-- root/root 854 2021-10-12 06:43 ./usr/share/man/man1/centrifuge-download.1.gz -rw-r--r-- root/root 920 2021-10-12 06:43 ./usr/share/man/man1/centrifuge-inspect.1.gz -rw-r--r-- root/root 1931 2021-10-12 06:43 ./usr/share/man/man1/centrifuge.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [560 B] Get:5 copy:/<>/apt_archive ./ Packages [647 B] Fetched 2170 B in 0s (80.0 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:armel t1utils unzip 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 6783 kB of archives. After this operation, 20.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.5-1 [51.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-2 [547 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-2 [927 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40 [72.2 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b7 [38.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.27-1 [17.1 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libconst-fast-perl all 0.014-1.1 [8552 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.26-1 [129 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.01-2 [35.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-2 [60.4 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.008-1+b1 [12.0 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.634-1 [46.5 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b2 [27.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012004-1 [351 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1 [35.5 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-4 [88.2 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.109.0 [1338 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6783 kB in 0s (50.3 MB/s) Selecting previously unselected package diffstat. (Reading database ... 22177 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.27-2_amd64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package gpg. Preparing to unpack .../03-gpg_2.2.27-2_amd64.deb ... Unpacking gpg (2.2.27-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../04-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../05-libapt-pkg-perl_0.1.40_amd64.deb ... Unpacking libapt-pkg-perl (0.1.40) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../06-libb-hooks-op-check-perl_0.22-1+b3_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b3) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../07-libdynaloader-functions-perl_0.003-1.1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1.1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../08-libdevel-callchecker-perl_0.008-1+b2_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b2) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../09-libparams-classify-perl_0.015-1+b3_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../10-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../11-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../12-libmodule-implementation-perl_0.09-1.1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1.1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../13-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../14-libvariable-magic-perl_0.62-1+b3_amd64.deb ... Unpacking libvariable-magic-perl (0.62-1+b3) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../15-libb-hooks-endofscope-perl_0.24-1.1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.24-1.1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../16-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../17-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../18-libclass-method-modifiers-perl_2.13-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../19-libclass-xsaccessor-perl_1.19-3+b7_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b7) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../20-libclone-perl_0.45-1+b1_amd64.deb ... Unpacking libclone-perl (0.45-1+b1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../21-libconfig-tiny-perl_2.27-1_all.deb ... Unpacking libconfig-tiny-perl (2.27-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../22-libparams-util-perl_1.102-1+b1_amd64.deb ... Unpacking libparams-util-perl (1.102-1+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../23-libsub-install-perl_0.928-1.1_all.deb ... Unpacking libsub-install-perl (0.928-1.1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../24-libdata-optlist-perl_0.112-1_all.deb ... Unpacking libdata-optlist-perl (0.112-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../25-libsub-exporter-perl_0.988-1_all.deb ... Unpacking libsub-exporter-perl (0.988-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../26-libconst-fast-perl_0.014-1.1_all.deb ... Unpacking libconst-fast-perl (0.014-1.1) ... Selecting previously unselected package libcpanel-json-xs-perl. Preparing to unpack .../27-libcpanel-json-xs-perl_4.26-1_amd64.deb ... Unpacking libcpanel-json-xs-perl (4.26-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../28-libdevel-stacktrace-perl_2.0400-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../29-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../30-libiterator-perl_0.03+ds1-1.1_all.deb ... Unpacking libiterator-perl (0.03+ds1-1.1) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../31-libiterator-util-perl_0.02+ds1-1.1_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-1.1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../32-libexporter-tiny-perl_1.002002-1_all.deb ... Unpacking libexporter-tiny-perl (1.002002-1) ... Selecting previously unselected package liblist-moreutils-xs-perl. Preparing to unpack .../33-liblist-moreutils-xs-perl_0.430-2_amd64.deb ... Unpacking liblist-moreutils-xs-perl (0.430-2) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../34-liblist-moreutils-perl_0.430-2_all.deb ... Unpacking liblist-moreutils-perl (0.430-2) ... Selecting previously unselected package libdata-dpath-perl. Preparing to unpack .../35-libdata-dpath-perl_0.58-1_all.deb ... Unpacking libdata-dpath-perl (0.58-1) ... Selecting previously unselected package libdata-messagepack-perl. Preparing to unpack .../36-libdata-messagepack-perl_1.01-2_amd64.deb ... Unpacking libdata-messagepack-perl (1.01-2) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../37-libnet-domain-tld-perl_1.75-1.1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1.1) ... Selecting previously unselected package libdata-validate-domain-perl. Preparing to unpack .../38-libdata-validate-domain-perl_0.10-1.1_all.deb ... Unpacking libdata-validate-domain-perl (0.10-1.1) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../39-libdevel-size-perl_0.83-1+b2_amd64.deb ... Unpacking libdevel-size-perl (0.83-1+b2) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../40-libemail-address-xs-perl_1.04-1+b3_amd64.deb ... Unpacking libemail-address-xs-perl (1.04-1+b3) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../41-libipc-system-simple-perl_1.30-1_all.deb ... Unpacking libipc-system-simple-perl (1.30-1) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../42-libfile-basedir-perl_0.09-1_all.deb ... Unpacking libfile-basedir-perl (0.09-1) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../43-libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../44-libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../45-libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package libfont-ttf-perl. Preparing to unpack .../46-libfont-ttf-perl_1.06-1.1_all.deb ... Unpacking libfont-ttf-perl (1.06-1.1) ... Selecting previously unselected package libhtml-html5-entities-perl. Preparing to unpack .../47-libhtml-html5-entities-perl_0.004-1.1_all.deb ... Unpacking libhtml-html5-entities-perl (0.004-1.1) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../48-libimport-into-perl_1.002005-1_all.deb ... Unpacking libimport-into-perl (1.002005-1) ... Selecting previously unselected package libio-interactive-perl. Preparing to unpack .../49-libio-interactive-perl_1.023-1_all.deb ... Unpacking libio-interactive-perl (1.023-1) ... Selecting previously unselected package libio-prompt-tiny-perl. Preparing to unpack .../50-libio-prompt-tiny-perl_0.003-1_all.deb ... Unpacking libio-prompt-tiny-perl (0.003-1) ... Selecting previously unselected package libipc-run3-perl. Preparing to unpack .../51-libipc-run3-perl_0.048-2_all.deb ... Unpacking libipc-run3-perl (0.048-2) ... Selecting previously unselected package libjson-maybexs-perl. Preparing to unpack .../52-libjson-maybexs-perl_1.004003-1_all.deb ... Unpacking libjson-maybexs-perl (1.004003-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../53-liblist-compare-perl_0.55-1_all.deb ... Unpacking liblist-compare-perl (0.55-1) ... Selecting previously unselected package liblist-someutils-perl. Preparing to unpack .../54-liblist-someutils-perl_0.58-1_all.deb ... Unpacking liblist-someutils-perl (0.58-1) ... Selecting previously unselected package liblist-utilsby-perl. Preparing to unpack .../55-liblist-utilsby-perl_0.11-1_all.deb ... Unpacking liblist-utilsby-perl (0.11-1) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../56-liblzo2-2_2.10-2_amd64.deb ... Unpacking liblzo2-2:amd64 (2.10-2) ... Selecting previously unselected package libmarkdown2:amd64. Preparing to unpack .../57-libmarkdown2_2.2.7-2_amd64.deb ... Unpacking libmarkdown2:amd64 (2.2.7-2) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../58-librole-tiny-perl_2.002004-1_all.deb ... Unpacking librole-tiny-perl (2.002004-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../59-libsub-quote-perl_2.006006-1_all.deb ... Unpacking libsub-quote-perl (2.006006-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../60-libmoo-perl_2.005004-2_all.deb ... Unpacking libmoo-perl (2.005004-2) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../61-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libmoox-aliases-perl. Preparing to unpack .../62-libmoox-aliases-perl_0.001006-1.1_all.deb ... Unpacking libmoox-aliases-perl (0.001006-1.1) ... Selecting previously unselected package libmouse-perl. Preparing to unpack .../63-libmouse-perl_2.5.10-1+b1_amd64.deb ... Unpacking libmouse-perl (2.5.10-1+b1) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../64-libpackage-stash-perl_0.39-1_all.deb ... Unpacking libpackage-stash-perl (0.39-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../65-libsub-identify-perl_0.14-1+b3_amd64.deb ... Unpacking libsub-identify-perl (0.14-1+b3) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../66-libsub-name-perl_0.26-1+b1_amd64.deb ... Unpacking libsub-name-perl (0.26-1+b1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../67-libnamespace-clean-perl_0.27-1_all.deb ... Unpacking libnamespace-clean-perl (0.27-1) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../68-libpath-tiny-perl_0.118-1_all.deb ... Unpacking libpath-tiny-perl (0.118-1) ... Selecting previously unselected package libperlio-gzip-perl. Preparing to unpack .../69-libperlio-gzip-perl_0.19-1+b7_amd64.deb ... Unpacking libperlio-gzip-perl (0.19-1+b7) ... Selecting previously unselected package libperlio-utf8-strict-perl. Preparing to unpack .../70-libperlio-utf8-strict-perl_0.008-1+b1_amd64.deb ... Unpacking libperlio-utf8-strict-perl (0.008-1+b1) ... Selecting previously unselected package libproc-processtable-perl:amd64. Preparing to unpack .../71-libproc-processtable-perl_0.634-1_amd64.deb ... Unpacking libproc-processtable-perl:amd64 (0.634-1) ... Selecting previously unselected package libsereal-decoder-perl. Preparing to unpack .../72-libsereal-decoder-perl_4.018+ds-1+b1_amd64.deb ... Unpacking libsereal-decoder-perl (4.018+ds-1+b1) ... Selecting previously unselected package libsereal-encoder-perl. Preparing to unpack .../73-libsereal-encoder-perl_4.018+ds-1+b1_amd64.deb ... Unpacking libsereal-encoder-perl (4.018+ds-1+b1) ... Selecting previously unselected package libsort-versions-perl. Preparing to unpack .../74-libsort-versions-perl_1.62-1_all.deb ... Unpacking libsort-versions-perl (1.62-1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../75-libterm-readkey-perl_2.38-1+b2_amd64.deb ... Unpacking libterm-readkey-perl (2.38-1+b2) ... Selecting previously unselected package libtext-levenshteinxs-perl. Preparing to unpack .../76-libtext-levenshteinxs-perl_0.03-4+b8_amd64.deb ... Unpacking libtext-levenshteinxs-perl (0.03-4+b8) ... Selecting previously unselected package libtext-markdown-discount-perl:amd64. Preparing to unpack .../77-libtext-markdown-discount-perl_0.13-1_amd64.deb ... Unpacking libtext-markdown-discount-perl:amd64 (0.13-1) ... Selecting previously unselected package libtext-xslate-perl. Preparing to unpack .../78-libtext-xslate-perl_3.5.8-1+b1_amd64.deb ... Unpacking libtext-xslate-perl (3.5.8-1+b1) ... Selecting previously unselected package libtime-duration-perl. Preparing to unpack .../79-libtime-duration-perl_1.21-1_all.deb ... Unpacking libtime-duration-perl (1.21-1) ... Selecting previously unselected package libtime-moment-perl. Preparing to unpack .../80-libtime-moment-perl_0.44-1+b3_amd64.deb ... Unpacking libtime-moment-perl (0.44-1+b3) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../81-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libtype-tiny-perl. Preparing to unpack .../82-libtype-tiny-perl_1.012004-1_all.deb ... Unpacking libtype-tiny-perl (1.012004-1) ... Selecting previously unselected package libunicode-utf8-perl. Preparing to unpack .../83-libunicode-utf8-perl_0.62-1+b2_amd64.deb ... Unpacking libunicode-utf8-perl (0.62-1+b2) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../84-liburi-perl_5.08-1_all.deb ... Unpacking liburi-perl (5.08-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../85-libyaml-0-2_0.2.2-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.2-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../86-libyaml-libyaml-perl_0.83+ds-1_amd64.deb ... Unpacking libyaml-libyaml-perl (0.83+ds-1) ... Selecting previously unselected package lzip. Preparing to unpack .../87-lzip_1.22-4_amd64.deb ... Unpacking lzip (1.22-4) ... Selecting previously unselected package lzop. Preparing to unpack .../88-lzop_1.04-2_amd64.deb ... Unpacking lzop (1.04-2) ... Selecting previously unselected package patchutils. Preparing to unpack .../89-patchutils_0.4.2-1_amd64.deb ... Unpacking patchutils (0.4.2-1) ... Selecting previously unselected package t1utils. Preparing to unpack .../90-t1utils_1.41-4_amd64.deb ... Unpacking t1utils (1.41-4) ... Selecting previously unselected package unzip. Preparing to unpack .../91-unzip_6.0-26_amd64.deb ... Unpacking unzip (6.0-26) ... Selecting previously unselected package lintian. Preparing to unpack .../92-lintian_2.109.0_all.deb ... Unpacking lintian (2.109.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:armel. Preparing to unpack .../93-sbuild-build-depends-lintian-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40) ... Setting up libunicode-utf8-perl (0.62-1+b2) ... Setting up libmouse-perl (2.5.10-1+b1) ... Setting up libdata-messagepack-perl (1.01-2) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b3) ... Setting up libcpanel-json-xs-perl (4.26-1) ... Setting up libdevel-size-perl (0.83-1+b2) ... Setting up unzip (6.0-26) ... Setting up libyaml-libyaml-perl (0.83+ds-1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b3) ... Setting up libassuan0:amd64 (2.5.5-1) ... Setting up libconfig-tiny-perl (2.27-1) ... Setting up libsereal-encoder-perl (4.018+ds-1+b1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up libperlio-utf8-strict-perl (0.008-1+b1) ... Setting up libio-prompt-tiny-perl (0.003-1) ... Setting up lzip (1.22-4) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.634-1) ... Setting up libpath-tiny-perl (0.118-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.27-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libsort-versions-perl (1.62-1) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.08-1) ... Setting up gpg (2.2.27-2) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtype-tiny-perl (1.012004-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-2) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.109.0) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.32-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 33220 Build-Time: 120 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 47 Job: centrifuge_1.0.3-9 Lintian: pass Machine Architecture: amd64 Package: centrifuge Package-Time: 182 Source-Version: 1.0.3-9 Space: 33220 Status: successful Version: 1.0.3-9 -------------------------------------------------------------------------------- Finished at 2021-10-15T20:05:26Z Build needed 00:03:02, 33220k disk space