sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | centrifuge 1.0.4.2-1 (mips64el) Mon, 10 Feb 2025 14:11:04 +0000 | +==============================================================================+ Package: centrifuge Version: 1.0.4.2-1 Source Version: 1.0.4.2-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-48520b0c-4065-4828-b92a-c8da76185e9d' with '<>' I: NOTICE: Log filtering will replace 'build/centrifuge-5GZ2jt/resolver-BqoCU5' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [205 kB] Get:2 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB] Get:3 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/non-free-firmware Sources.diff/Index [63.3 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:6 http://localhost:3142/debian unstable/contrib Sources T-2025-02-10-0811.26-F-2025-02-10-0811.26.pdiff [915 B] Get:7 http://localhost:3142/debian unstable/main Sources T-2025-02-10-0811.26-F-2025-02-10-0213.27.pdiff [51.9 kB] Get:8 http://localhost:3142/debian unstable/non-free-firmware Sources T-2025-02-10-0213.27-F-2025-02-10-0213.27.pdiff [29 B] Get:6 http://localhost:3142/debian unstable/contrib Sources T-2025-02-10-0811.26-F-2025-02-10-0811.26.pdiff [915 B] Get:9 http://localhost:3142/debian unstable/main amd64 Packages T-2025-02-10-0811.26-F-2025-02-10-0213.27.pdiff [59.1 kB] Get:8 http://localhost:3142/debian unstable/non-free-firmware Sources T-2025-02-10-0213.27-F-2025-02-10-0213.27.pdiff [29 B] Get:7 http://localhost:3142/debian unstable/main Sources T-2025-02-10-0811.26-F-2025-02-10-0213.27.pdiff [51.9 kB] Get:9 http://localhost:3142/debian unstable/main amd64 Packages T-2025-02-10-0811.26-F-2025-02-10-0213.27.pdiff [59.1 kB] Get:10 http://localhost:3142/debian unstable/main mips64el Packages [9702 kB] Fetched 10.3 MB in 3s (3723 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'centrifuge' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/centrifuge.git Please use: git clone https://salsa.debian.org/med-team/centrifuge.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 741 kB of source archives. Get:1 http://localhost:3142/debian unstable/main centrifuge 1.0.4.2-1 (dsc) [2233 B] Get:2 http://localhost:3142/debian unstable/main centrifuge 1.0.4.2-1 (tar) [725 kB] Get:3 http://localhost:3142/debian unstable/main centrifuge 1.0.4.2-1 (diff) [14.4 kB] Fetched 741 kB in 0s (12.4 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/centrifuge-5GZ2jt/centrifuge-1.0.4.2' with '<>' I: NOTICE: Log filtering will replace 'build/centrifuge-5GZ2jt' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-python, dh-sequence-python3, jellyfish, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-python, dh-sequence-python3, jellyfish, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [790 B] Get:5 copy:/<>/apt_archive ./ Packages [836 B] Fetched 2235 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: architecture-properties:mips64el autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cpp-14-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-python dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-14-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-14-base:mips64el gcc-14-cross-base-mipsen gcc-14-mips64el-linux-gnuabi64 gcc-14-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian jellyfish:mips64el libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbrotli1:mips64el libbz2-1.0:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl3t64-gnutls:mips64el libdb5.3t64:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:mips64el libelf1t64 libexpat1 libfakeroot libffi8 libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-14-dev:mips64el libgcc-14-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp10:mips64el libgnutls30t64:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libhogweed6t64:mips64el libhts3t64:mips64el libhtscodecs2:mips64el libicu72 libidn2-0:mips64el libio-string-perl libjellyfish-2.0-2:mips64el libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap2:mips64el liblocale-gettext-perl liblzma5:mips64el libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:mips64el libnghttp2-14:mips64el libnghttp3-9:mips64el libngtcp2-16:mips64el libngtcp2-crypto-gnutls8:mips64el libp11-kit0:mips64el libpipeline1 libproc2-0 libpsl5t64:mips64el libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libsqlite3-0 libssh2-1t64:mips64el libssl3t64:mips64el libstdc++-14-dev:mips64el libstdc++-14-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libtasn1-6:mips64el libtext-charwidth-perl libtext-wrapi18n-perl libtool libuchardet0 libunistring5 libunistring5:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mips64el linux-libc-dev-mips64el-cross m4 man-db media-types netbase po-debconf procps python3 python3-autocommand python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-minimal python3-more-itertools python3-pkg-resources python3-setuptools python3-typeguard python3-typing-extensions python3-zipp python3.13 python3.13-minimal readline-common sensible-utils ucf zlib1g:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make flit python3-build python3-installer python3-wheel binutils-multiarch gcc-14-doc manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el libnss-nis:mips64el libnss-nisplus:mips64el manpages-dev:mips64el gnutls-bin:mips64el krb5-doc:mips64el krb5-user:mips64el libstdc++-14-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.13-venv python3.13-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx ca-certificates:mips64el libarchive-cpio-perl krb5-locales:mips64el libldap-common:mips64el libgpm2 publicsuffix:mips64el libsasl2-modules:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc linux-sysctl-defaults ca-certificates The following NEW packages will be installed: architecture-properties:mips64el autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cpp-14-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-python dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-14-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-14-base:mips64el gcc-14-cross-base-mipsen gcc-14-mips64el-linux-gnuabi64 gcc-14-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian jellyfish:mips64el libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbrotli1:mips64el libbz2-1.0:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl3t64-gnutls:mips64el libdb5.3t64:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:mips64el libelf1t64 libexpat1 libfakeroot libffi8 libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-14-dev:mips64el libgcc-14-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp10:mips64el libgnutls30t64:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libhogweed6t64:mips64el libhts3t64:mips64el libhtscodecs2:mips64el libicu72 libidn2-0:mips64el libio-string-perl libjellyfish-2.0-2:mips64el libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap2:mips64el liblocale-gettext-perl liblzma5:mips64el libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:mips64el libnghttp2-14:mips64el libnghttp3-9:mips64el libngtcp2-16:mips64el libngtcp2-crypto-gnutls8:mips64el libp11-kit0:mips64el libpipeline1 libproc2-0 libpsl5t64:mips64el libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libsqlite3-0 libssh2-1t64:mips64el libssl3t64:mips64el libstdc++-14-dev:mips64el libstdc++-14-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libtasn1-6:mips64el libtext-charwidth-perl libtext-wrapi18n-perl libtool libuchardet0 libunistring5 libunistring5:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mips64el linux-libc-dev-mips64el-cross m4 man-db media-types netbase po-debconf procps python3 python3-autocommand python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-minimal python3-more-itertools python3-pkg-resources python3-setuptools python3-typeguard python3-typing-extensions python3-zipp python3.13 python3.13-minimal readline-common sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el 0 upgraded, 149 newly installed, 0 to remove and 0 not upgraded. Need to get 99.5 MB of archives. After this operation, 404 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://localhost:3142/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:5 http://localhost:3142/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get:6 http://localhost:3142/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get:7 http://localhost:3142/debian unstable/main amd64 media-types all 11.0.0 [27.6 kB] Get:8 http://localhost:3142/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250125-2 [135 kB] Get:11 http://localhost:3142/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get:15 http://localhost:3142/debian unstable/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get:17 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get:19 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get:20 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get:23 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get:24 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:26 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get:27 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:29 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:31 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:32 http://localhost:3142/debian unstable/main amd64 ucf all 3.0049 [42.5 kB] Get:33 http://localhost:3142/debian unstable/main mips64el architecture-properties mips64el 0.2.5 [2272 B] Get:34 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get:35 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:36 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:37 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get:38 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get:39 http://localhost:3142/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.43.50.20241230-1cross1+nmu1 [2903 kB] Get:40 http://localhost:3142/debian unstable/main amd64 gcc-14-mips64el-linux-gnuabi64-base amd64 14.2.0-13cross1 [48.8 kB] Get:41 http://localhost:3142/debian unstable/main amd64 cpp-14-mips64el-linux-gnuabi64 amd64 14.2.0-13cross1 [9700 kB] Get:42 http://localhost:3142/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:14.2.0-1 [3408 B] Get:43 http://localhost:3142/debian unstable/main amd64 cross-config all 2.6.20 [16.3 kB] Get:44 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base-mipsen all 14.2.0-13cross1 [44.1 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libc6-mips64el-cross all 2.40-5cross1 [1145 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libgcc-s1-mips64el-cross all 14.2.0-13cross1 [86.3 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libgomp1-mips64el-cross all 14.2.0-13cross1 [118 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libatomic1-mips64el-cross all 14.2.0-13cross1 [7676 B] Get:49 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-mips64el-cross all 14.2.0-13cross1 [330 kB] Get:50 http://localhost:3142/debian unstable/main amd64 gcc-14-mips64el-linux-gnuabi64 amd64 14.2.0-13cross1 [18.5 MB] Get:51 http://localhost:3142/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:14.2.0-1 [1460 B] Get:52 http://localhost:3142/debian unstable/main amd64 libstdc++6-mips64el-cross all 14.2.0-13cross1 [620 kB] Get:53 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 6.12.8-1cross1 [2311 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.40-5cross1 [1644 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-mips64el-cross all 14.2.0-13cross1 [2452 kB] Get:56 http://localhost:3142/debian unstable/main amd64 g++-14-mips64el-linux-gnuabi64 amd64 14.2.0-13cross1 [10.7 MB] Get:57 http://localhost:3142/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:14.2.0-1 [1212 B] Get:58 http://localhost:3142/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-3 [44.8 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:72 http://localhost:3142/debian unstable/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:73 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:74 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get:76 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:79 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:80 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:81 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get:83 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get:84 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:85 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:86 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get:87 http://localhost:3142/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:88 http://localhost:3142/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get:89 http://localhost:3142/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:90 http://localhost:3142/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get:91 http://localhost:3142/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:92 http://localhost:3142/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get:93 http://localhost:3142/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:94 http://localhost:3142/debian unstable/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get:95 http://localhost:3142/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:96 http://localhost:3142/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get:97 http://localhost:3142/debian unstable/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get:98 http://localhost:3142/debian unstable/main amd64 dh-python all 6.20250108 [113 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37-1 [29.7 kB] Get:100 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37-1 [75.6 kB] Get:101 http://localhost:3142/debian unstable/main mips64el gcc-14-base mips64el 14.2.0-16 [48.9 kB] Get:102 http://localhost:3142/debian unstable/main mips64el libgcc-s1 mips64el 14.2.0-16 [86.2 kB] Get:103 http://localhost:3142/debian unstable/main mips64el libc6 mips64el 2.40-6 [2472 kB] Get:104 http://localhost:3142/debian unstable/main mips64el libbz2-1.0 mips64el 1.0.8-6 [39.3 kB] Get:105 http://localhost:3142/debian unstable/main mips64el libbrotli1 mips64el 1.1.0-2+b6 [326 kB] Get:106 http://localhost:3142/debian unstable/main mips64el libgmp10 mips64el 2:6.3.0+dfsg-3 [551 kB] Get:107 http://localhost:3142/debian unstable/main mips64el libnettle8t64 mips64el 3.10-1+b1 [309 kB] Get:108 http://localhost:3142/debian unstable/main mips64el libhogweed6t64 mips64el 3.10-1+b1 [326 kB] Get:109 http://localhost:3142/debian unstable/main mips64el libunistring5 mips64el 1.3-1 [452 kB] Get:110 http://localhost:3142/debian unstable/main mips64el libidn2-0 mips64el 2.3.7-2+b1 [126 kB] Get:111 http://localhost:3142/debian unstable/main mips64el libffi8 mips64el 3.4.6-1 [23.5 kB] Get:112 http://localhost:3142/debian unstable/main mips64el libp11-kit0 mips64el 0.25.5-3 [343 kB] Get:113 http://localhost:3142/debian unstable/main mips64el libtasn1-6 mips64el 4.20.0-1 [47.1 kB] Get:114 http://localhost:3142/debian unstable/main mips64el libgnutls30t64 mips64el 3.8.8-2 [1273 kB] Get:115 http://localhost:3142/debian unstable/main mips64el libkrb5support0 mips64el 1.21.3-4 [31.5 kB] Get:116 http://localhost:3142/debian unstable/main mips64el libcom-err2 mips64el 1.47.2-1 [24.2 kB] Get:117 http://localhost:3142/debian unstable/main mips64el libk5crypto3 mips64el 1.21.3-4 [86.3 kB] Get:118 http://localhost:3142/debian unstable/main mips64el libkeyutils1 mips64el 1.6.3-4 [8664 B] Get:119 http://localhost:3142/debian unstable/main mips64el libzstd1 mips64el 1.5.6+dfsg-2 [292 kB] Get:120 http://localhost:3142/debian unstable/main mips64el zlib1g mips64el 1:1.3.dfsg+really1.3.1-1+b1 [80.3 kB] Get:121 http://localhost:3142/debian unstable/main mips64el libssl3t64 mips64el 3.4.0-2 [1730 kB] Get:122 http://localhost:3142/debian unstable/main mips64el libkrb5-3 mips64el 1.21.3-4 [295 kB] Get:123 http://localhost:3142/debian unstable/main mips64el libgssapi-krb5-2 mips64el 1.21.3-4 [123 kB] Get:124 http://localhost:3142/debian unstable/main mips64el libdb5.3t64 mips64el 5.3.28+dfsg2-9 [608 kB] Get:125 http://localhost:3142/debian unstable/main mips64el libsasl2-modules-db mips64el 2.1.28+dfsg1-8+b1 [19.4 kB] Get:126 http://localhost:3142/debian unstable/main mips64el libsasl2-2 mips64el 2.1.28+dfsg1-8+b1 [53.3 kB] Get:127 http://localhost:3142/debian unstable/main mips64el libldap2 mips64el 2.6.9+dfsg-1 [171 kB] Get:128 http://localhost:3142/debian unstable/main mips64el libnghttp2-14 mips64el 1.64.0-1 [69.5 kB] Get:129 http://localhost:3142/debian unstable/main mips64el libnghttp3-9 mips64el 1.6.0-2 [59.9 kB] Get:130 http://localhost:3142/debian unstable/main mips64el libngtcp2-16 mips64el 1.9.1-1 [108 kB] Get:131 http://localhost:3142/debian unstable/main mips64el libngtcp2-crypto-gnutls8 mips64el 1.9.1-1 [16.6 kB] Get:132 http://localhost:3142/debian unstable/main mips64el libpsl5t64 mips64el 0.21.2-1.1+b1 [56.9 kB] Get:133 http://localhost:3142/debian unstable/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2+b5 [53.6 kB] Get:134 http://localhost:3142/debian unstable/main mips64el libssh2-1t64 mips64el 1.11.1-1 [234 kB] Get:135 http://localhost:3142/debian unstable/main mips64el libcurl3t64-gnutls mips64el 8.12.0+git20250209.89ed161+ds-1 [326 kB] Get:136 http://localhost:3142/debian unstable/main mips64el libdeflate0 mips64el 1.23-1+b1 [37.8 kB] Get:137 http://localhost:3142/debian unstable/main mips64el libhtscodecs2 mips64el 1.6.1-1 [71.9 kB] Get:138 http://localhost:3142/debian unstable/main mips64el liblzma5 mips64el 5.6.3-1+b1 [266 kB] Get:139 http://localhost:3142/debian unstable/main mips64el libhts3t64 mips64el 1.21+ds-1 [421 kB] Get:140 http://localhost:3142/debian unstable/main mips64el libstdc++6 mips64el 14.2.0-16 [668 kB] Get:141 http://localhost:3142/debian unstable/main mips64el libjellyfish-2.0-2 mips64el 2.3.1-4 [64.2 kB] Get:142 http://localhost:3142/debian unstable/main mips64el jellyfish mips64el 2.3.1-4 [682 kB] Get:143 http://localhost:3142/debian unstable/main mips64el libatomic1 mips64el 14.2.0-16 [8000 B] Get:144 http://localhost:3142/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.38-1 [96.3 kB] Get:145 http://localhost:3142/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.38-1 [129 kB] Get:146 http://localhost:3142/debian unstable/main mips64el libc6-dev mips64el 2.40-6 [1654 kB] Get:147 http://localhost:3142/debian unstable/main mips64el libgomp1 mips64el 14.2.0-16 [121 kB] Get:148 http://localhost:3142/debian unstable/main mips64el libgcc-14-dev mips64el 14.2.0-16 [330 kB] Get:149 http://localhost:3142/debian unstable/main mips64el libstdc++-14-dev mips64el 14.2.0-16 [2454 kB] Preconfiguring packages ... Fetched 99.5 MB in 2s (43.8 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12871 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_amd64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:amd64 (3.13.2-1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... 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Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../06-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. 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Unpacking cpp-mips64el-linux-gnuabi64 (4:14.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../026-cross-config_2.6.20_all.deb ... Unpacking cross-config (2.6.20) ... Selecting previously unselected package gcc-14-cross-base-mipsen. Preparing to unpack .../027-gcc-14-cross-base-mipsen_14.2.0-13cross1_all.deb ... Unpacking gcc-14-cross-base-mipsen (14.2.0-13cross1) ... Selecting previously unselected package libc6-mips64el-cross. Preparing to unpack .../028-libc6-mips64el-cross_2.40-5cross1_all.deb ... Unpacking libc6-mips64el-cross (2.40-5cross1) ... Selecting previously unselected package libgcc-s1-mips64el-cross. Preparing to unpack .../029-libgcc-s1-mips64el-cross_14.2.0-13cross1_all.deb ... Unpacking libgcc-s1-mips64el-cross (14.2.0-13cross1) ... Selecting previously unselected package libgomp1-mips64el-cross. Preparing to unpack .../030-libgomp1-mips64el-cross_14.2.0-13cross1_all.deb ... Unpacking libgomp1-mips64el-cross (14.2.0-13cross1) ... Selecting previously unselected package libatomic1-mips64el-cross. Preparing to unpack .../031-libatomic1-mips64el-cross_14.2.0-13cross1_all.deb ... Unpacking libatomic1-mips64el-cross (14.2.0-13cross1) ... Selecting previously unselected package libgcc-14-dev-mips64el-cross. Preparing to unpack .../032-libgcc-14-dev-mips64el-cross_14.2.0-13cross1_all.deb ... Unpacking libgcc-14-dev-mips64el-cross (14.2.0-13cross1) ... Selecting previously unselected package gcc-14-mips64el-linux-gnuabi64. Preparing to unpack .../033-gcc-14-mips64el-linux-gnuabi64_14.2.0-13cross1_amd64.deb ... Unpacking gcc-14-mips64el-linux-gnuabi64 (14.2.0-13cross1) ... Selecting previously unselected package gcc-mips64el-linux-gnuabi64. Preparing to unpack .../034-gcc-mips64el-linux-gnuabi64_4%3a14.2.0-1_amd64.deb ... Unpacking gcc-mips64el-linux-gnuabi64 (4:14.2.0-1) ... Selecting previously unselected package libstdc++6-mips64el-cross. 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Setting up libffi8:amd64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up netbase (6.4) ... Setting up linux-libc-dev-mips64el-cross (6.12.8-1cross1) ... Setting up gcc-14-mips64el-linux-gnuabi64-base:amd64 (14.2.0-13cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libgomp1-mips64el-cross (14.2.0-13cross1) ... Setting up libgcc-s1-mips64el-cross (14.2.0-13cross1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libatomic1-mips64el-cross (14.2.0-13cross1) ... Setting up libtool (2.5.4-3) ... Setting up cpp-14-mips64el-linux-gnuabi64 (14.2.0-13cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgcc-14-dev-mips64el-cross (14.2.0-13cross1) ... Setting up libc6-dev-mips64el-cross (2.40-5cross1) ... Setting up ucf (3.0049) ... Setting up libstdc++6-mips64el-cross (14.2.0-13cross1) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up cpp-mips64el-linux-gnuabi64 (4:14.2.0-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libstdc++-14-dev-mips64el-cross (14.2.0-13cross1) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up gcc-14-mips64el-linux-gnuabi64 (14.2.0-13cross1) ... Setting up python3.13 (3.13.2-1) ... Setting up g++-14-mips64el-linux-gnuabi64 (14.2.0-13cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up python3-typing-extensions (4.12.2-2) ... Setting up gcc-mips64el-linux-gnuabi64 (4:14.2.0-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up g++-mips64el-linux-gnuabi64 (4:14.2.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up debhelper (13.24.1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dh-python (6.20250108) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libgcc-s1:mips64el (14.2.0-16) ... Setting up libc6:mips64el (2.40-6) ... Setting up libnghttp3-9:mips64el (1.6.0-2) ... Setting up libdb5.3t64:mips64el (5.3.28+dfsg2-9) ... Setting up libffi8:mips64el (3.4.6-1) ... Setting up libtasn1-6:mips64el (4.20.0-1) ... Setting up libngtcp2-16:mips64el (1.9.1-1) ... Setting up libbz2-1.0:mips64el (1.0.8-6) ... Setting up libstdc++6:mips64el (14.2.0-16) ... Setting up libhtscodecs2:mips64el (1.6.1-1) ... Setting up libzstd1:mips64el (1.5.6+dfsg-2) ... Setting up libkeyutils1:mips64el (1.6.3-4) ... Setting up liblzma5:mips64el (5.6.3-1+b1) ... Setting up libbrotli1:mips64el (1.1.0-2+b6) ... Setting up libnghttp2-14:mips64el (1.64.0-1) ... Setting up libdeflate0:mips64el (1.23-1+b1) ... Setting up zlib1g:mips64el (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:mips64el (1:4.4.38-1) ... Setting up libcom-err2:mips64el (1.47.2-1) ... Setting up libgomp1:mips64el (14.2.0-16) ... Setting up libkrb5support0:mips64el (1.21.3-4) ... Setting up libsasl2-modules-db:mips64el (2.1.28+dfsg1-8+b1) ... Setting up libjellyfish-2.0-2:mips64el (2.3.1-4) ... Setting up libnettle8t64:mips64el (3.10-1+b1) ... Setting up libgmp10:mips64el (2:6.3.0+dfsg-3) ... Setting up libp11-kit0:mips64el (0.25.5-3) ... Setting up libunistring5:mips64el (1.3-1) ... Setting up libatomic1:mips64el (14.2.0-16) ... Setting up libk5crypto3:mips64el (1.21.3-4) ... Setting up libhogweed6t64:mips64el (3.10-1+b1) ... Setting up libcrypt-dev:mips64el (1:4.4.38-1) ... Setting up libc6-dev:mips64el (2.40-6) ... Setting up libgcc-14-dev:mips64el (14.2.0-16) ... Setting up libstdc++-14-dev:mips64el (14.2.0-16) ... Setting up libssl3t64:mips64el (3.4.0-2) ... Setting up libidn2-0:mips64el (2.3.7-2+b1) ... Setting up libsasl2-2:mips64el (2.1.28+dfsg1-8+b1) ... Setting up libkrb5-3:mips64el (1.21.3-4) ... Setting up libssh2-1t64:mips64el (1.11.1-1) ... Setting up libldap2:mips64el (2.6.9+dfsg-1) ... Setting up libgnutls30t64:mips64el (3.8.8-2) ... Setting up libpsl5t64:mips64el (0.21.2-1.1+b1) ... Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssapi-krb5-2:mips64el (1.21.3-4) ... Setting up libngtcp2-crypto-gnutls8:mips64el (1.9.1-1) ... Setting up libcurl3t64-gnutls:mips64el (8.12.0+git20250209.89ed161+ds-1) ... Setting up libhts3t64:mips64el (1.21+ds-1) ... Setting up jellyfish:mips64el (2.3.1-4) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.40-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) amd64 (x86_64) Toolchain package versions: binutils_2.44-1 dpkg-dev_1.22.15 g++-14_14.2.0-16 gcc-14_14.2.0-16 libc6-dev_2.40-6 libstdc++-14-dev_14.2.0-16 libstdc++-14-dev-mips64el-cross_14.2.0-13cross1 libstdc++6_14.2.0-16 libstdc++6-mips64el-cross_14.2.0-13cross1 linux-libc-dev_6.12.13-1 Package versions: apt_2.9.28 architecture-properties_0.2.5 autoconf_2.72-3 automake_1:1.17-3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1 binutils_2.44-1 binutils-common_2.44-1 binutils-mips64el-linux-gnuabi64_2.43.50.20241230-1cross1+nmu1 binutils-x86-64-linux-gnu_2.44-1 bsdextrautils_2.40.4-3 bsdutils_1:2.40.4-3 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-16 cpp-14-mips64el-linux-gnuabi64_14.2.0-13cross1 cpp-14-x86-64-linux-gnu_14.2.0-16 cpp-mips64el-linux-gnuabi64_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 cross-config_2.6.20 crossbuild-essential-mips64el_12.9 dash_0.5.12-12 debconf_1.5.89 debhelper_13.24.1 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-python_6.20250108 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-2 dpkg_1.22.15 dpkg-cross_2.6.20 dpkg-dev_1.22.15 dwz_0.15-1+b1 e2fsprogs_1.47.2-1 fakeroot_1.37-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-16 g++-14-mips64el-linux-gnuabi64_14.2.0-13cross1 g++-14-x86-64-linux-gnu_14.2.0-16 g++-mips64el-linux-gnuabi64_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-16 gcc-14-base_14.2.0-16 gcc-14-cross-base-mipsen_14.2.0-13cross1 gcc-14-mips64el-linux-gnuabi64_14.2.0-13cross1 gcc-14-mips64el-linux-gnuabi64-base_14.2.0-13cross1 gcc-14-x86-64-linux-gnu_14.2.0-16 gcc-mips64el-linux-gnuabi64_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 jellyfish_2.3.1-4 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.28 libarchive-zip-perl_1.68-1 libasan8_14.2.0-16 libatomic1_14.2.0-16 libatomic1-mips64el-cross_14.2.0-13cross1 libattr1_1:2.5.2-2 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b1 libbinutils_2.44-1 libblkid1_2.40.4-3 libbrotli1_1.1.0-2+b6 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.40-6 libc-dev-bin_2.40-6 libc6_2.40-6 libc6-dev_2.40-6 libc6-dev-mips64el-cross_2.40-5cross1 libc6-mips64el-cross_2.40-5cross1 libcap-ng0_0.8.5-4 libcap2_1:2.66-5+b1 libcc1-0_14.2.0-16 libcom-err2_1.47.2-1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-3 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-1 libctf0_2.44-1 libcurl3t64-gnutls_8.12.0+git20250209.89ed161+ds-1 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdebian-dpkgcross-perl_2.6.20 libdeflate0_1.23-1+b1 libdpkg-perl_1.22.15 libelf1t64_0.192-4 libexpat1_2.6.4-1 libext2fs2t64_1.47.2-1 libfakeroot_1.37-1 libffi8_3.4.6-1 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.14.1-2 libfile-which-perl_1.27-2 libgcc-14-dev_14.2.0-16 libgcc-14-dev-mips64el-cross_14.2.0-13cross1 libgcc-s1_14.2.0-16 libgcc-s1-mips64el-cross_14.2.0-13cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.8-2 libgomp1_14.2.0-16 libgomp1-mips64el-cross_14.2.0-13cross1 libgprofng0_2.44-1 libgssapi-krb5-2_1.21.3-4 libhogweed6t64_3.10-1+b1 libhts3t64_1.21+ds-1 libhtscodecs2_1.6.1-1 libhwasan0_14.2.0-16 libicu72_72.1-6 libidn2-0_2.3.7-2+b1 libio-string-perl_1.08-4 libisl23_0.27-1 libitm1_14.2.0-16 libjansson4_2.14-2+b3 libjellyfish-2.0-2_2.3.1-4 libk5crypto3_1.21.3-4 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-4 libkrb5support0_1.21.3-4 libldap2_2.6.9+dfsg-1 liblocale-gettext-perl_1.07-7+b1 liblsan0_14.2.0-16 liblz4-1_1.10.0-3 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmd0_1.1.0-2+b1 libmount1_2.40.4-3 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libncursesw6_6.5+20250125-2 libnettle8t64_3.10-1+b1 libnghttp2-14_1.64.0-1 libnghttp3-9_1.6.0-2 libngtcp2-16_1.9.1-1 libngtcp2-crypto-gnutls8_1.9.1-1 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-2 libpam-modules-bin_1.7.0-2 libpam-runtime_1.7.0-2 libpam0g_1.7.0-2 libpcre2-8-0_10.45-1 libperl5.40_5.40.0-8 libpipeline1_1.5.8-1 libproc2-0_2:4.0.4-7 libpsl5t64_0.21.2-1.1+b1 libpython3-stdlib_3.13.1-2 libpython3.13-minimal_3.13.2-1 libpython3.13-stdlib_3.13.2-1 libquadmath0_14.2.0-16 libreadline8t64_8.2-6 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-8+b1 libsasl2-modules-db_2.1.28+dfsg1-8+b1 libseccomp2_2.5.5-2 libselinux1_3.8-1 libsemanage-common_3.7-2.1 libsemanage2_3.7-2.1 libsepol2_3.8-1 libsframe1_2.44-1 libsmartcols1_2.40.4-3 libsqlite3-0_3.46.1-1 libss2_1.47.2-1 libssh2-1t64_1.11.1-1 libssl3t64_3.4.0-2 libstdc++-14-dev_14.2.0-16 libstdc++-14-dev-mips64el-cross_14.2.0-13cross1 libstdc++6_14.2.0-16 libstdc++6-mips64el-cross_14.2.0-13cross1 libsystemd0_257.2-3 libtasn1-6_4.20.0-1 libtext-charwidth-perl_0.04-11+b4 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.5+20250125-2 libtool_2.5.4-3 libtsan2_14.2.0-16 libubsan1_14.2.0-16 libuchardet0_0.0.8-1+b2 libudev1_257.2-3 libunistring5_1.3-1 libuuid1_2.40.4-3 libxml-libxml-perl_2.0207+dfsg+really+2.0134-5+b2 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-4 libxml-simple-perl_2.25-2 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libxxhash0_0.8.3-2 libyaml-perl_1.31-1 libzstd1_1.5.6+dfsg-2 linux-libc-dev_6.12.13-1 linux-libc-dev-mips64el-cross_6.12.8-1cross1 login_1:4.16.0-2+really2.40.4-3 login.defs_1:4.16.0-7 logsave_1.47.2-1 m4_1.4.19-5 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20250131-1 media-types_11.0.0 mount_2.40.4-3 ncurses-base_6.5+20250125-2 ncurses-bin_6.5+20250125-2 netbase_6.4 openssl-provider-legacy_3.4.0-2 passwd_1:4.16.0-7 patch_2.7.6-7 perl_5.40.0-8 perl-base_5.40.0-8 perl-modules-5.40_5.40.0-8 po-debconf_1.0.21+nmu1 procps_2:4.0.4-7 python3_3.13.1-2 python3-autocommand_2.2.2-3 python3-inflect_7.3.1-2 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.13.1-2 python3-more-itertools_10.6.0-1 python3-pkg-resources_75.6.0-1 python3-setuptools_75.6.0-1 python3-typeguard_4.4.1-1 python3-typing-extensions_4.12.2-2 python3-zipp_3.21.0-1 python3.13_3.13.2-1 python3.13-minimal_3.13.2-1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sqv_1.2.1-6 sysvinit-utils_3.13-1 tar_1.35+dfsg-3.1 tzdata_2025a-2 ucf_3.0049 util-linux_2.40.4-3 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: centrifuge Binary: centrifuge Architecture: any Version: 1.0.4.2-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://ccb.jhu.edu/software/centrifuge/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/centrifuge Vcs-Git: https://salsa.debian.org/med-team/centrifuge.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-python, dh-sequence-python3, jellyfish Package-List: centrifuge deb science optional arch=any Checksums-Sha1: 1a3b12389de45d4ffac6f18d2e53ca814bf1d841 724549 centrifuge_1.0.4.2.orig.tar.gz 72d999489fd0b428ed6e02a832a9eea099ea9a24 14412 centrifuge_1.0.4.2-1.debian.tar.xz Checksums-Sha256: db142790522a72971c7deda7d22e1f29fce54dbf23afc2e40def9f5a764f4c99 724549 centrifuge_1.0.4.2.orig.tar.gz 62b2c861273cd5a2b47147fcc787eab524d2c6c7477a2510f7abb0c48d736079 14412 centrifuge_1.0.4.2-1.debian.tar.xz Files: fb533376bfd31a515e1e238e22f298d6 724549 centrifuge_1.0.4.2.orig.tar.gz 713f012ce61a4456b07ad9be91f8917e 14412 centrifuge_1.0.4.2-1.debian.tar.xz Dgit: c4d9da73ca2427f99f75d8b2c285b752f4e1773a debian archive/debian/1.0.4.2-1 https://git.dgit.debian.org/centrifuge -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmcgCtIUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdp58A/+Mz/4F/kQ/j3dYVmKOMXHiha/jziC XH1ukNy2CCEaMw7agdn1rhTESbY0/2kcoMpePnOelCof4IURdr6DoJ2+saJayrVG xrTfndHn0SKr9PCSEcDU/hcdqaa3R4giXr6C+vwuJbGVAefDGawnV122+Sl+ZTM1 KS7JjnAtv+RGiTTyLVquOqF8HIQKr5C9RwkMthhyVAxz7eoUvyvQNubBNFLQjA42 o1F1X8kZfLurqLuVYaHE5ctj5SvFPQSlBjWp4XyjJb0sKGdGDnj0wvqpYumRsCfL khqz6whdTbMcEwFC/K28JhR2CsC4gecvLgSsriYqxquXrTsFmUXDmTuQu9+j4sFr JtytqdruC0NjvqaKrEozhKQZ6fPff+5VF20gnQSwsOXZJMJG7j3Cfu7hsF9FoET4 +EX6w9jo0JyfgMpR3X/RM6k8t2InD5VAw45/cz7RQxrRcpU2mf99nSwr8SumtqUv rJskHWFyRvBIgnnrUTJw8dSlorKfysg+yn0730hUtKwnkodIr4Yj4b0Ui5zBtOw4 M4fkVJBxRIF9mMQ07RtoCOyKS1IE7JuXuWY5ReqVKGxBRhlIsqiib32N7pWOkLco v+cVLu9fc2uNTaL0ODeb8FDcR1pLHP2x0fUMnrxcEFSb3VU+ZQJYP52lEEjdwJZY Ut/VgCyNyJVTyTc= =rZlX -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./centrifuge_1.0.4.2-1.dsc: unsupported subcommand dpkg-source: info: extracting centrifuge in /<> dpkg-source: info: unpacking centrifuge_1.0.4.2.orig.tar.gz dpkg-source: info: unpacking centrifuge_1.0.4.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Makefile-Use-consistent-build-time-and-build-host.patch dpkg-source: info: applying 0003-Fix-make-install-DESTDIR.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying no_msse2.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix_arm_build.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.iNmyD07mWe/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-48520b0c-4065-4828-b92a-c8da76185e9d SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package centrifuge dpkg-buildpackage: info: source version 1.0.4.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el debian/rules clean dh clean --with python3 dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f centrifuge-build-bin centrifuge-class centrifuge-inspect-bin centrifuge-build-bin-debug centrifuge-class-debug centrifuge-inspect-bin-debug \ centrifuge-build-bin.exe centrifuge-class.exe centrifuge-inspect-bin.exe centrifuge-build-bin-debug.exe centrifuge-class-debug.exe centrifuge-inspect-bin-debug.exe \ centrifuge-src.zip centrifuge-bin.zip rm -f core.* .tmp.head rm -rf *.dSYM make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- BITS=64 BITS_FLAG= make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mips64el-linux-gnuabi64-pkg-config CXX=mips64el-linux-gnuabi64-g\+\+ CC=mips64el-linux-gnuabi64-gcc BITS=64 BITS_FLAG= make[2]: Entering directory '/<>' mips64el-linux-gnuabi64-g++ -O3 -funroll-loops -g3 -std=c++11 -DCOMPILER_OPTIONS="\"-O3 -funroll-loops -g3 -std=c++11 \"" \ -fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.4\"" -DBUILD_HOST="\"BUILDHOST\"" -DBUILD_TIME="\"`date --utc --date=@1730152336 +%F`\"" -DCOMPILER_VERSION="\"`mips64el-linux-gnuabi64-g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBOWTIE_MM -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ \ -o centrifuge-build-bin centrifuge_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp diff_sample.cpp centrifuge_build_main.cpp \ -lpthread cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from bt2_idx.h:48, from centrifuge_build.cpp:27: ref_read.h: In function ‘RefRecord fastaRefReadAppend(FileBuf&, bool, TStr&, TIndexOffU&, RefReadInParams&, std::string*) [with TStr = SString]’: ref_read.h:295:49: warning: array subscript -1 is below array bounds of ‘uint8_t []’ {aka ‘unsigned char []’} [-Warray-bounds=] 295 | if(rparms.nsToAs && asc2dnacat[c] >= 2) c = 'A'; | ~~~~~~~~~~~~^ In file included from bt2_idx.h:41: alphabet.h:36:16: note: while referencing ‘asc2dnacat’ 36 | extern uint8_t asc2dnacat[]; | ^~~~~~~~~~ In function ‘RefRecord fastaRefReadAppend(FileBuf&, bool, TStr&, TIndexOffU&, RefReadInParams&, std::string*) [with TStr = S2bDnaString]’, inlined from ‘void Ebwt::joinToDisk(EList&, EList&, index_t, const RefReadInParams&, TStr&, std::ostream&, std::ostream&) [with TStr = S2bDnaString; index_t = long unsigned int]’ at bt2_idx.h:3302:38: ref_read.h:295:49: warning: array subscript -1 is below array bounds of ‘uint8_t []’ {aka ‘unsigned char []’} [-Warray-bounds=] 295 | if(rparms.nsToAs && asc2dnacat[c] >= 2) c = 'A'; | ~~~~~~~~~~~~^ alphabet.h: In function ‘void Ebwt::joinToDisk(EList&, EList&, index_t, const RefReadInParams&, TStr&, std::ostream&, std::ostream&) [with TStr = S2bDnaString; index_t = long unsigned int]’: alphabet.h:36:16: note: while referencing ‘asc2dnacat’ 36 | extern uint8_t asc2dnacat[]; | ^~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ mips64el-linux-gnuabi64-g++ -O3 -funroll-loops -g3 -std=c++11 -DCOMPILER_OPTIONS="\"-O3 -funroll-loops -g3 -std=c++11 \"" \ -fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.4\"" -DBUILD_HOST="\"BUILDHOST\"" -DBUILD_TIME="\"`date --utc --date=@1730152336 +%F`\"" -DCOMPILER_VERSION="\"`mips64el-linux-gnuabi64-g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBOWTIE_MM -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ \ -o centrifuge-class centrifuge.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp qual.cpp pat.cpp read_qseq.cpp ref_coord.cpp mask.cpp pe.cpp aligner_seed_policy.cpp scoring.cpp presets.cpp simple_func.cpp random_util.cpp outq.cpp centrifuge_main.cpp \ -lpthread cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ centrifuge.cpp: In function ‘void driver(const char*, const std::string&, const std::string&)’: centrifuge.cpp:3090:25: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3090 | auto_ptr refs; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/14/memory:78, from bt2_idx.h:28, from centrifuge.cpp:34: /usr/mips64el-linux-gnuabi64/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from centrifuge.cpp:47: classifier.h: In instantiation of ‘int Classifier::go(const Scoring&, const Ebwt&, const Ebwt&, const BitPairReference&, WalkMetrics&, PerReadMetrics&, HIMetrics&, SpeciesMetrics&, RandomSource&, AlnSinkWrap&) [with index_t = long unsigned int; local_index_t = short unsigned int]’: centrifuge.cpp:2693:34: required from here 2693 | classifier.go(sc, ebwtFw, ebwtBw, ref, wlm, prm, him, spm, rnd, msinkwrap); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ classifier.h:432:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 432 | if(_hitMap[i]._rank + 1 >= _hitMap[i].path.size()) { | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ classifier.h:442:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 442 | uint64_t parent_taxID = (rank + 1 >= _hitMap[i].path.size() ? 1 : _hitMap[i].path[rank + 1]); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ classifier.h:475:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 475 | uint64_t cur_parent_taxID = (rank + 1 >= _hitMap[i].path.size() ? 1 : _hitMap[i].path[rank + 1]); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ centrifuge.cpp: In instantiation of ‘void driver(const char*, const std::string&, const std::string&) [with TStr = SString; std::string = std::__cxx11::basic_string]’: centrifuge.cpp:3469:26: required from here 3469 | driver >("DNA", bt2index, outfile); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ centrifuge.cpp:3027:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 3027 | if ( fileIdx < mates1.size() ) | ~~~~~~~~^~~~~~~~~~~~~~~ centrifuge.cpp:3033:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 3033 | else if ( fileIdx < mates1.size() + queries.size() ) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ classifier.h: In instantiation of ‘void Classifier::searchForwardAndReverse(index_t, const Ebwt&, const Scoring&, RandomSource&, const ReportingParams&, index_t) [with index_t = long unsigned int; local_index_t = short unsigned int]’: classifier.h:238:13: required from ‘int Classifier::go(const Scoring&, const Ebwt&, const Ebwt&, const BitPairReference&, WalkMetrics&, PerReadMetrics&, HIMetrics&, SpeciesMetrics&, RandomSource&, AlnSinkWrap&) [with index_t = long unsigned int; local_index_t = short unsigned int]’ 238 | searchForwardAndReverse(rdi, ebwtFw, sc, rnd, rp, increment); | ^~~~~~~~~~~~~~~~~~~~~~~ centrifuge.cpp:2693:34: required from here 2693 | classifier.go(sc, ebwtFw, ebwtBw, ref, wlm, prm, him, spm, rnd, msinkwrap); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ classifier.h:864:50: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘const THitInt’ {aka ‘const long int’} [-Wsign-compare] 864 | hit.size() + rchit.size() > rp.ihits) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ mips64el-linux-gnuabi64-g++ -O3 -funroll-loops -g3 -std=c++11 \ -DCOMPILER_OPTIONS="\"-O3 -funroll-loops -g3 -std=c++11 \"" \ -fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.4\"" -DBUILD_HOST="\"BUILDHOST\"" -DBUILD_TIME="\"`date --utc --date=@1730152336 +%F`\"" -DCOMPILER_VERSION="\"`mips64el-linux-gnuabi64-g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBOWTIE_MM -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -Wall \ -I . \ -o centrifuge-inspect-bin centrifuge_inspect.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp \ -lpthread cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- prefix=/usr/lib/centrifuge make -j1 install DESTDIR=/<>/debian/centrifuge AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" prefix=/usr/lib/centrifuge make[2]: Entering directory '/<>' mkdir -p /<>/debian/centrifuge/usr/lib/centrifuge/bin mkdir -p /<>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/indices install -m 0644 indices/Makefile /<>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/indices install -d -m 0755 /<>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc install -m 0644 doc/* /<>/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc for file in centrifuge-build-bin centrifuge-class centrifuge-inspect-bin centrifuge centrifuge-build centrifuge-inspect centrifuge-download centrifuge-kreport centrifuge-BuildSharedSequence.pl centrifuge-RemoveEmptySequence.pl centrifuge-RemoveN.pl centrifuge-compress.pl centrifuge-sort-nt.pl; do \ install -m 0755 $file /<>/debian/centrifuge/usr/lib/centrifuge/bin ; \ done make[2]: Leaving directory '/<>' mv debian/centrifuge/usr/lib/centrifuge/bin/* debian/centrifuge/usr/lib/centrifuge/ rmdir debian/centrifuge/usr/lib/centrifuge/bin # move documentation to correct location mkdir -p debian/centrifuge/usr/share/doc/centrifuge/html mv debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc/*html \ debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc/*css \ debian/centrifuge/usr/share/doc/centrifuge/html # remove useless stuff in documentation dir rm -rf debian/centrifuge/usr/lib/centrifuge/share/doc/ make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done rm -rf debian/*/usr/lib/centrifuge/share/centrifuge/doc find debian -name manual.inc.html | xargs rm -rf make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_python3 -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld.so.1.usr-is-merged dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package centrifuge: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package centrifuge: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'centrifuge' in '../centrifuge_1.0.4.2-1_mips64el.deb'. dpkg-deb: building package 'centrifuge-dbgsym' in '../centrifuge-dbgsym_1.0.4.2-1_mips64el.deb'. dpkg-genbuildinfo --build=any -O../centrifuge_1.0.4.2-1_mips64el.buildinfo dpkg-genchanges --build=any -O../centrifuge_1.0.4.2-1_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-02-10T14:13:05Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ --------------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ centrifuge_1.0.4.2-1_mips64el.changes: -------------------------------------- Format: 1.8 Date: Mon, 28 Oct 2024 22:52:16 +0100 Source: centrifuge Binary: centrifuge centrifuge-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 1.0.4.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: centrifuge - rapid and memory-efficient system for classification of DNA seque Changes: centrifuge (1.0.4.2-1) unstable; urgency=medium . * New upstream version 1.0.4.2 Checksums-Sha1: 72de30cb0637c339fbf6f09d1f4ef7cb2a1a1475 3672176 centrifuge-dbgsym_1.0.4.2-1_mips64el.deb 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Source: centrifuge Binary: centrifuge centrifuge-dbgsym Architecture: mips64el Version: 1.0.4.2-1 Checksums-Md5: ebdfa0e6c69235efdca79efb15c34db8 3672176 centrifuge-dbgsym_1.0.4.2-1_mips64el.deb ea1e83154b8109ec6866a8f4e1f0df6b 556316 centrifuge_1.0.4.2-1_mips64el.deb Checksums-Sha1: 72de30cb0637c339fbf6f09d1f4ef7cb2a1a1475 3672176 centrifuge-dbgsym_1.0.4.2-1_mips64el.deb 525d2aa908d7a6742ec6778e553fe401864734d0 556316 centrifuge_1.0.4.2-1_mips64el.deb Checksums-Sha256: 8f97a48af214a0aadfb6de617538c198eac7e9b44a7815fb16787c9fb1f89a31 3672176 centrifuge-dbgsym_1.0.4.2-1_mips64el.deb 1852b2a5e050edc4ef1a7ccd42591f519a73995f674173164626ea6e9c680611 556316 centrifuge_1.0.4.2-1_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 10 Feb 2025 14:13:04 +0000 Build-Path: /<> Installed-Build-Depends: architecture-properties (= 0.2.5), autoconf (= 2.72-3), automake (= 1:1.17-3), autopoint (= 0.23.1-1), autotools-dev (= 20220109.1), base-files (= 13.6), base-passwd (= 3.6.6), bash (= 5.2.37-1), binutils (= 2.44-1), binutils-common (= 2.44-1), binutils-x86-64-linux-gnu (= 2.44-1), bsdextrautils (= 2.40.4-3), bsdutils (= 1:2.40.4-3), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.5-1+b1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-16), cpp-14-x86-64-linux-gnu (= 14.2.0-16), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.89), debhelper (= 13.24.1), debianutils (= 5.21), dh-autoreconf (= 20), dh-python (= 6.20250108), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-2), dpkg (= 1.22.15), dpkg-dev (= 1.22.15), dwz (= 0.15-1+b1), file (= 1:5.45-3+b1), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-16), g++-14-x86-64-linux-gnu (= 14.2.0-16), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-16), gcc-14-base (= 14.2.0-16), gcc-14-x86-64-linux-gnu (= 14.2.0-16), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-1), gettext-base (= 0.23.1-1), grep (= 3.11-4), groff-base (= 1.23.0-7), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), jellyfish (= 2.3.1-4), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-16), libatomic1 (= 14.2.0-16), libattr1 (= 1:2.5.2-2), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b1), libbinutils (= 2.44-1), libblkid1 (= 2.40.4-3), libbrotli1 (= 1.1.0-2+b6), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-6), libc-dev-bin (= 2.40-6), libc6 (= 2.40-6), libc6-dev (= 2.40-6), libcap-ng0 (= 0.8.5-4), libcap2 (= 1:2.66-5+b1), libcc1-0 (= 14.2.0-16), libcom-err2 (= 1.47.2-1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-1), libctf0 (= 2.44-1), libcurl3t64-gnutls (= 8.12.0+git20250209.89ed161+ds-1), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.277), libdebhelper-perl (= 13.24.1), libdeflate0 (= 1.23-1+b1), libdpkg-perl (= 1.22.15), libelf1t64 (= 0.192-4), libexpat1 (= 2.6.4-1), libffi8 (= 3.4.6-1), 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1.6.0-2), libngtcp2-16 (= 1.9.1-1), libngtcp2-crypto-gnutls8 (= 1.9.1-1), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-2), libpam-modules-bin (= 1.7.0-2), libpam-runtime (= 1.7.0-2), libpam0g (= 1.7.0-2), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.0-8), libpipeline1 (= 1.5.8-1), libpsl5t64 (= 0.21.2-1.1+b1), libpython3-stdlib (= 3.13.1-2), libpython3.13-minimal (= 3.13.2-1), libpython3.13-stdlib (= 3.13.2-1), libquadmath0 (= 14.2.0-16), libreadline8t64 (= 8.2-6), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-8+b1), libsasl2-modules-db (= 2.1.28+dfsg1-8+b1), libseccomp2 (= 2.5.5-2), libselinux1 (= 3.8-1), libsframe1 (= 2.44-1), libsmartcols1 (= 2.40.4-3), libsqlite3-0 (= 3.46.1-1), libssh2-1t64 (= 1.11.1-1), libssl3t64 (= 3.4.0-2), libstdc++-14-dev (= 14.2.0-16), libstdc++6 (= 14.2.0-16), libsystemd0 (= 257.2-3), libtasn1-6 (= 4.20.0-1), libtinfo6 (= 6.5+20250125-2), libtool (= 2.5.4-3), libtsan2 (= 14.2.0-16), libubsan1 (= 14.2.0-16), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.2-3), libunistring5 (= 1.3-1), libuuid1 (= 2.40.4-3), libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1), libzstd1 (= 1.5.6+dfsg-2), linux-libc-dev (= 6.12.13-1), m4 (= 1.4.19-5), make (= 4.4.1-1), man-db (= 2.13.0-1), mawk (= 1.3.4.20250131-1), media-types (= 11.0.0), ncurses-base (= 6.5+20250125-2), ncurses-bin (= 6.5+20250125-2), netbase (= 6.4), openssl-provider-legacy (= 3.4.0-2), patch (= 2.7.6-7), perl (= 5.40.0-8), perl-base (= 5.40.0-8), perl-modules-5.40 (= 5.40.0-8), po-debconf (= 1.0.21+nmu1), python3 (= 3.13.1-2), python3-autocommand (= 2.2.2-3), python3-inflect (= 7.3.1-2), python3-jaraco.context (= 6.0.0-1), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-minimal (= 3.13.1-2), python3-more-itertools (= 10.6.0-1), python3-pkg-resources (= 75.6.0-1), python3-setuptools (= 75.6.0-1), python3-typeguard (= 4.4.1-1), python3-typing-extensions (= 4.12.2-2), python3-zipp (= 3.21.0-1), python3.13 (= 3.13.2-1), python3.13-minimal (= 3.13.2-1), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.13-1), tar (= 1.35+dfsg-3.1), tzdata (= 2025a-2), util-linux (= 2.40.4-3), xz-utils (= 5.6.3-1+b1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1730152336" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ centrifuge-dbgsym_1.0.4.2-1_mips64el.deb ---------------------------------------- new Debian package, version 2.0. size 3672176 bytes: control archive=700 bytes. 472 bytes, 12 lines control 412 bytes, 4 lines md5sums Package: centrifuge-dbgsym Source: centrifuge Version: 1.0.4.2-1 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 5261 Depends: centrifuge (= 1.0.4.2-1) Section: debug Priority: optional Description: debug symbols for centrifuge Build-Ids: 44d26bca76a9a1cd590ad7a05407cf5884b0f435 bc16fc9e6e696c8a0b7b88de0df9dc2a3f038194 ec9c9ad654407baf0d1647aa60ca30e783681b2b drwxr-xr-x root/root 0 2024-10-28 21:52 ./ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/debug/.build-id/44/ -rw-r--r-- root/root 1549552 2024-10-28 21:52 ./usr/lib/debug/.build-id/44/d26bca76a9a1cd590ad7a05407cf5884b0f435.debug drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/debug/.build-id/bc/ -rw-r--r-- root/root 1250184 2024-10-28 21:52 ./usr/lib/debug/.build-id/bc/16fc9e6e696c8a0b7b88de0df9dc2a3f038194.debug drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/debug/.build-id/ec/ -rw-r--r-- root/root 2344488 2024-10-28 21:52 ./usr/lib/debug/.build-id/ec/9c9ad654407baf0d1647aa60ca30e783681b2b.debug drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 226656 2024-10-28 21:52 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/centrifuge.debug drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/share/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-10-28 21:52 ./usr/share/doc/centrifuge-dbgsym -> centrifuge centrifuge_1.0.4.2-1_mips64el.deb --------------------------------- new Debian package, version 2.0. size 556316 bytes: control archive=1800 bytes. 1174 bytes, 21 lines control 2253 bytes, 30 lines md5sums Package: centrifuge Version: 1.0.4.2-1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1903 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), python3:any, python3, hisat2, jellyfish Section: science Priority: optional Homepage: https://ccb.jhu.edu/software/centrifuge/ Description: rapid and memory-efficient system for classification of DNA sequences Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers. drwxr-xr-x root/root 0 2024-10-28 21:52 ./ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/bin/ -rwxr-xr-x root/root 312 2024-10-28 21:52 ./usr/bin/centrifuge lrwxrwxrwx root/root 0 2024-10-28 21:52 ./usr/bin/centrifuge-build -> centrifuge lrwxrwxrwx root/root 0 2024-10-28 21:52 ./usr/bin/centrifuge-compress -> centrifuge lrwxrwxrwx root/root 0 2024-10-28 21:52 ./usr/bin/centrifuge-download -> centrifuge lrwxrwxrwx root/root 0 2024-10-28 21:52 ./usr/bin/centrifuge-inspect -> centrifuge drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/centrifuge/ -rwxr-xr-x root/root 25629 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge -rwxr-xr-x root/root 12326 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge-BuildSharedSequence.pl -rwxr-xr-x root/root 407 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge-RemoveEmptySequence.pl -rwxr-xr-x root/root 1007 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge-RemoveN.pl -rwxr-xr-x root/root 2312 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge-build -rwxr-xr-x root/root 545936 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge-build-bin -rwxr-xr-x root/root 753432 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge-class -rwxr-xr-x root/root 13305 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge-compress.pl -rwxr-xr-x root/root 13262 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge-download -rwxr-xr-x root/root 2369 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge-inspect -rwxr-xr-x root/root 410848 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge-inspect-bin -rwxr-xr-x root/root 6703 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge-kreport -rwxr-xr-x root/root 3214 2024-10-28 21:52 ./usr/lib/centrifuge/centrifuge-sort-nt.pl drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/centrifuge/share/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/centrifuge/share/centrifuge/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/lib/centrifuge/share/centrifuge/indices/ -rw-r--r-- root/root 12887 2024-10-28 21:52 ./usr/lib/centrifuge/share/centrifuge/indices/Makefile drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/share/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/share/doc/centrifuge/ -rw-r--r-- root/root 1427 2024-10-28 21:52 ./usr/share/doc/centrifuge/changelog.Debian.gz -rw-r--r-- root/root 1061 2024-10-28 21:52 ./usr/share/doc/centrifuge/copyright drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/share/doc/centrifuge/html/ -rw-r--r-- root/root 1234 2024-10-28 21:52 ./usr/share/doc/centrifuge/html/add.css -rw-r--r-- root/root 1158 2024-10-28 21:52 ./usr/share/doc/centrifuge/html/faq.shtml -rw-r--r-- root/root 423 2024-10-28 21:52 ./usr/share/doc/centrifuge/html/footer.inc.html -rw-r--r-- root/root 2938 2024-10-28 21:52 ./usr/share/doc/centrifuge/html/index.shtml.gz -rw-r--r-- root/root 84288 2024-10-28 21:52 ./usr/share/doc/centrifuge/html/manual.html -rw-r--r-- root/root 1068 2024-10-28 21:52 ./usr/share/doc/centrifuge/html/manual.shtml -rw-r--r-- root/root 1550 2024-10-28 21:52 ./usr/share/doc/centrifuge/html/sidebar.inc.shtml.gz -rw-r--r-- root/root 7942 2024-10-28 21:52 ./usr/share/doc/centrifuge/html/style.css drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/share/man/ drwxr-xr-x root/root 0 2024-10-28 21:52 ./usr/share/man/man1/ -rw-r--r-- root/root 1204 2024-10-28 21:52 ./usr/share/man/man1/centrifuge-build.1.gz -rw-r--r-- root/root 379 2024-10-28 21:52 ./usr/share/man/man1/centrifuge-compress.1.gz -rw-r--r-- root/root 854 2024-10-28 21:52 ./usr/share/man/man1/centrifuge-download.1.gz -rw-r--r-- root/root 920 2024-10-28 21:52 ./usr/share/man/man1/centrifuge-inspect.1.gz -rw-r--r-- root/root 1931 2024-10-28 21:52 ./usr/share/man/man1/centrifuge.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1372 B] Get:5 copy:/<>/apt_archive ./ Packages [1457 B] Fetched 3444 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: Unsatisfied dependencies: libngtcp2-crypto-gnutls8 : Depends: libgnutls30t64 (>= 3.8.2) but it is not going to be installed librtmp1 : Depends: libgnutls30t64 (>= 3.8.1) but it is not going to be installed libcurl3t64-gnutls : Depends: libgnutls30t64 (>= 3.8.6) but it is not going to be installed Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:mips64el : Depends: lintian:amd64 E: External solver failed with: Unsatisfied dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 95 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 17 Job: centrifuge_1.0.4.2-1 Lintian: error Machine Architecture: amd64 Package: centrifuge Package-Time: 121 Source-Version: 1.0.4.2-1 Space: n/a Status: successful Version: 1.0.4.2-1 -------------------------------------------------------------------------------- Finished at 2025-02-10T14:13:05Z Build needed 00:02:01, no disk space