sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | clustalx 2.1+lgpl-8 (arm64) Mon, 01 Apr 2019 03:38:41 +0000 | +==============================================================================+ Package: clustalx Version: 2.1+lgpl-8 Source Version: 2.1+lgpl-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-6b27e2be-1447-4223-80aa-d572b80a48d8' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [242 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-31-0807.50.pdiff [1774 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-31-1410.24.pdiff [8686 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-31-2012.22.pdiff [5895 B] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-04-01-0208.28.pdiff [4578 B] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-04-01-0208.28.pdiff [4578 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-31-0807.50.pdiff [894 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-31-1410.24.pdiff [6144 B] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-31-2012.22.pdiff [7001 B] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-04-01-0208.28.pdiff [3953 B] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-04-01-0208.28.pdiff [3953 B] Get:12 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8092 kB] Fetched 8429 kB in 2s (4491 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libperl5.28 perl perl-base perl-modules-5.28 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 8471 kB of archives. After this operation, 12.3 kB disk space will be freed. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.28 amd64 5.28.1-6 [3883 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.28.1-6 [204 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 perl-base amd64 5.28.1-6 [1511 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.28 all 5.28.1-6 [2873 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8471 kB in 0s (80.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11936 files and directories currently installed.) Preparing to unpack .../libperl5.28_5.28.1-6_amd64.deb ... Unpacking libperl5.28:amd64 (5.28.1-6) over (5.28.1-5) ... Preparing to unpack .../perl_5.28.1-6_amd64.deb ... Unpacking perl (5.28.1-6) over (5.28.1-5) ... Preparing to unpack .../perl-base_5.28.1-6_amd64.deb ... Unpacking perl-base (5.28.1-6) over (5.28.1-5) ... Setting up perl-base (5.28.1-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11936 files and directories currently installed.) Preparing to unpack .../perl-modules-5.28_5.28.1-6_all.deb ... Unpacking perl-modules-5.28 (5.28.1-6) over (5.28.1-5) ... Setting up perl-modules-5.28 (5.28.1-6) ... Setting up libperl5.28:amd64 (5.28.1-6) ... Setting up perl (5.28.1-6) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'clustalx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/clustalx.git Please use: git clone https://salsa.debian.org/med-team/clustalx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 359 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-8 (dsc) [2079 B] Get:2 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-8 (tar) [342 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-8 (diff) [14.9 kB] Fetched 359 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/clustalx-CLM1j8/clustalx-2.1+lgpl' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-CLM1j8' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Q88HIb/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-Q88HIb/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Q88HIb/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-Q88HIb/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Q88HIb/apt_archive ./ Sources [362 B] Get:5 copy:/<>/resolver-Q88HIb/apt_archive ./ Packages [452 B] Fetched 1771 B in 0s (136 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libmpx2-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev autoconf automake libtool flex bison gdb-aarch64-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sbuild-build-depends-core-dummy:arm64 sensible-utils ucf 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 41.8 MB of archives. After this operation, 161 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Q88HIb/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.31.1-16 [2905 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu-base amd64 8.3.0-4cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-aarch64-linux-gnu amd64 8.3.0-4cross1 [6250 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-4cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.28-7cross1 [1312 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:8.3.0-4cross1 [34.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 8.3.0-4cross1 [66.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 8.3.0-4cross1 [23.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 8.3.0-4cross1 [8628 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 8.3.0-4cross1 [326 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 8.3.0-4cross1 [321 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 8.3.0-4cross1 [117 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 8.3.0-4cross1 [254 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 8.3.0-4cross1 [110 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-arm64-cross all 8.3.0-4cross1 [826 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu amd64 8.3.0-4cross1 [6686 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 4.19.20-1cross1 [1209 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.28-7cross1 [2322 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-arm64-cross all 8.3.0-4cross1 [1484 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-aarch64-linux-gnu amd64 8.3.0-4cross1 [6825 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.8 MB in 1s (57.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11936 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package binutils-aarch64-linux-gnu. Preparing to unpack .../06-binutils-aarch64-linux-gnu_2.31.1-16_amd64.deb ... Unpacking binutils-aarch64-linux-gnu (2.31.1-16) ... Selecting previously unselected package gcc-8-aarch64-linux-gnu-base:amd64. Preparing to unpack .../07-gcc-8-aarch64-linux-gnu-base_8.3.0-4cross1_amd64.deb ... Unpacking gcc-8-aarch64-linux-gnu-base:amd64 (8.3.0-4cross1) ... Selecting previously unselected package cpp-8-aarch64-linux-gnu. Preparing to unpack .../08-cpp-8-aarch64-linux-gnu_8.3.0-4cross1_amd64.deb ... Unpacking cpp-8-aarch64-linux-gnu (8.3.0-4cross1) ... Selecting previously unselected package cpp-aarch64-linux-gnu. Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking cpp-aarch64-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../10-cross-config_2.6.15-2_all.deb ... Unpacking cross-config (2.6.15-2) ... 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Preparing to unpack .../31-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../32-libicu63_63.1-6_amd64.deb ... Unpacking libicu63:amd64 (63.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../33-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../34-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../35-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../36-libxml-sax-perl_1.00+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../37-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../38-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../39-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../40-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../41-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../42-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../43-libdebian-dpkgcross-perl_2.6.15-2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../44-dpkg-cross_2.6.15-2_all.deb ... Unpacking dpkg-cross (2.6.15-2) ... Selecting previously unselected package crossbuild-essential-arm64. Preparing to unpack .../45-crossbuild-essential-arm64_12.6_all.deb ... Unpacking crossbuild-essential-arm64 (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:arm64. Preparing to unpack .../46-sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-4cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up binutils-aarch64-linux-gnu (2.31.1-16) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up gcc-8-aarch64-linux-gnu-base:amd64 (8.3.0-4cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-2) ... Setting up libc6-arm64-cross (2.28-7cross1) ... Setting up cpp-8-aarch64-linux-gnu (8.3.0-4cross1) ... Setting up libitm1-arm64-cross (8.3.0-4cross1) ... Setting up linux-libc-dev-arm64-cross (4.19.20-1cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libatomic1-arm64-cross (8.3.0-4cross1) ... Setting up libgcc1-arm64-cross (1:8.3.0-4cross1) ... Setting up libgomp1-arm64-cross (8.3.0-4cross1) ... Setting up libc6-dev-arm64-cross (2.28-7cross1) ... Setting up libstdc++6-arm64-cross (8.3.0-4cross1) ... Setting up cpp-aarch64-linux-gnu (4:8.3.0-1) ... Setting up ucf (3.0038+nmu1) ... Setting up liblsan0-arm64-cross (8.3.0-4cross1) ... Setting up libubsan1-arm64-cross (8.3.0-4cross1) ... Setting up libtsan0-arm64-cross (8.3.0-4cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-arm64-cross (8.3.0-4cross1) ... Setting up libgcc-8-dev-arm64-cross (8.3.0-4cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-8-aarch64-linux-gnu (8.3.0-4cross1) ... Setting up libstdc++-8-dev-arm64-cross (8.3.0-4cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-aarch64-linux-gnu (4:8.3.0-1) ... Setting up g++-8-aarch64-linux-gnu (8.3.0-4cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-aarch64-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-arm64 (12.6) ... Setting up sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-Q88HIb/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-Q88HIb/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Q88HIb/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Q88HIb/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Q88HIb/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-Q88HIb/apt_archive ./ Packages [568 B] Fetched 2015 B in 0s (127 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:arm64 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Q88HIb/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:arm64. (Reading database ... 15216 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools dpkg-deb: building package 'sbuild-build-depends-clustalx-dummy' in '/<>/resolver-Q88HIb/apt_archive/sbuild-build-depends-clustalx-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-clustalx-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-Q88HIb/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Q88HIb/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Q88HIb/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Q88HIb/apt_archive ./ Sources [651 B] Get:5 copy:/<>/resolver-Q88HIb/apt_archive ./ Packages [734 B] Fetched 2348 B in 0s (145 kB/s) Reading package lists... Reading package lists... Install clustalx build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz fontconfig fontconfig-config fonts-dejavu-core gcc-8-base:arm64 gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libavahi-client3 libavahi-client3:arm64 libavahi-common-data libavahi-common-data:arm64 libavahi-common3 libavahi-common3:arm64 libblkid1:arm64 libbrotli1 libbsd0 libbsd0:arm64 libc6:arm64 libc6-dev:arm64 libcap2 libcap2-bin libclang1-7 libcom-err2:arm64 libcroco3 libcups2 libcups2:arm64 libdbus-1-3 libdbus-1-3:arm64 libdouble-conversion1 libdouble-conversion1:arm64 libdrm-amdgpu1 libdrm-amdgpu1:arm64 libdrm-common libdrm-dev:arm64 libdrm-etnaviv1:arm64 libdrm-freedreno1:arm64 libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:arm64 libdrm-radeon1 libdrm-radeon1:arm64 libdrm-tegra0:arm64 libdrm2 libdrm2:arm64 libedit2 libedit2:arm64 libegl-mesa0 libegl-mesa0:arm64 libegl1 libegl1:arm64 libelf1 libelf1:arm64 libevdev2 libevdev2:arm64 libexpat1 libexpat1:arm64 libffi6:arm64 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1:arm64 libfreetype6 libfreetype6:arm64 libgbm1 libgbm1:arm64 libgcc-8-dev:arm64 libgcc1:arm64 libgcrypt20:arm64 libgl1 libgl1:arm64 libgl1-mesa-dev:arm64 libgl1-mesa-dri libgl1-mesa-dri:arm64 libglapi-mesa libglapi-mesa:arm64 libgles1:arm64 libgles2:arm64 libglib2.0-0 libglib2.0-0:arm64 libglu1-mesa:arm64 libglu1-mesa-dev:arm64 libglvnd-core-dev:arm64 libglvnd-dev:arm64 libglvnd0 libglvnd0:arm64 libglx-mesa0 libglx-mesa0:arm64 libglx0 libglx0:arm64 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgpg-error0:arm64 libgraphite2-3 libgraphite2-3:arm64 libgssapi-krb5-2 libgssapi-krb5-2:arm64 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:arm64 libharfbuzz0b libharfbuzz0b:arm64 libhogweed4:arm64 libhyphen0 libice6 libice6:arm64 libicu63:arm64 libidn2-0:arm64 libinput-bin libinput10 libinput10:arm64 libitm1:arm64 libjpeg62-turbo libjpeg62-turbo:arm64 libk5crypto3 libk5crypto3:arm64 libkeyutils1 libkeyutils1:arm64 libkrb5-3 libkrb5-3:arm64 libkrb5support0 libkrb5support0:arm64 libllvm7 libllvm7:arm64 liblsan0:arm64 liblz4-1:arm64 liblzma5:arm64 libmount1:arm64 libmtdev1 libmtdev1:arm64 libncurses6 libnettle6:arm64 libopengl0:arm64 liborc-0.4-0 libp11-kit0:arm64 libpciaccess0 libpcre2-16-0 libpcre2-16-0:arm64 libpcre3:arm64 libpipeline1 libpng16-16 libpng16-16:arm64 libpthread-stubs0-dev:arm64 libqt5concurrent5:arm64 libqt5core5a libqt5core5a:arm64 libqt5dbus5 libqt5dbus5:arm64 libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:arm64 libqt5help5 libqt5network5 libqt5network5:arm64 libqt5positioning5 libqt5printsupport5 libqt5printsupport5:arm64 libqt5qml5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:arm64 libqt5sql5-sqlite libqt5test5:arm64 libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:arm64 libqt5xml5 libqt5xml5:arm64 libselinux1:arm64 libsensors-config libsensors5 libsensors5:arm64 libsigsegv2 libsm6 libsm6:arm64 libsqlite3-0 libssl1.1 libssl1.1:arm64 libstdc++-8-dev:arm64 libstdc++6:arm64 libsystemd0:arm64 libtasn1-6:arm64 libtinfo6:arm64 libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 libudev1:arm64 libunistring2:arm64 libuuid1:arm64 libvulkan-dev:arm64 libvulkan1:arm64 libwacom-common libwacom2 libwacom2:arm64 libwayland-client0 libwayland-client0:arm64 libwayland-server0 libwayland-server0:arm64 libwebp6 libwoff1 libx11-6 libx11-6:arm64 libx11-data libx11-dev:arm64 libx11-xcb-dev:arm64 libx11-xcb1 libx11-xcb1:arm64 libxau-dev:arm64 libxau6 libxau6:arm64 libxcb-dri2-0 libxcb-dri2-0:arm64 libxcb-dri2-0-dev:arm64 libxcb-dri3-0 libxcb-dri3-0:arm64 libxcb-dri3-dev:arm64 libxcb-glx0 libxcb-glx0:arm64 libxcb-glx0-dev:arm64 libxcb-icccm4 libxcb-icccm4:arm64 libxcb-image0 libxcb-image0:arm64 libxcb-keysyms1 libxcb-keysyms1:arm64 libxcb-present-dev:arm64 libxcb-present0 libxcb-present0:arm64 libxcb-randr0 libxcb-randr0:arm64 libxcb-randr0-dev:arm64 libxcb-render-util0 libxcb-render-util0:arm64 libxcb-render0 libxcb-render0:arm64 libxcb-render0-dev:arm64 libxcb-shape0 libxcb-shape0:arm64 libxcb-shape0-dev:arm64 libxcb-shm0 libxcb-shm0:arm64 libxcb-sync-dev:arm64 libxcb-sync1 libxcb-sync1:arm64 libxcb-util0 libxcb-util0:arm64 libxcb-xfixes0 libxcb-xfixes0:arm64 libxcb-xfixes0-dev:arm64 libxcb-xinerama0 libxcb-xinerama0:arm64 libxcb-xkb1 libxcb-xkb1:arm64 libxcb1 libxcb1:arm64 libxcb1-dev:arm64 libxdamage-dev:arm64 libxdamage1 libxdamage1:arm64 libxdmcp-dev:arm64 libxdmcp6 libxdmcp6:arm64 libxext-dev:arm64 libxext6 libxext6:arm64 libxfixes-dev:arm64 libxfixes3 libxfixes3:arm64 libxi6 libxi6:arm64 libxkbcommon-x11-0 libxkbcommon-x11-0:arm64 libxkbcommon0 libxkbcommon0:arm64 libxrender1 libxrender1:arm64 libxshmfence-dev:arm64 libxshmfence1 libxshmfence1:arm64 libxslt1.1 libxxf86vm-dev:arm64 libxxf86vm1 libxxf86vm1:arm64 linux-libc-dev:arm64 lsb-base m4 man-db mesa-common-dev:arm64 po-debconf qdoc-qt5 qt5-assistant qt5-qmake:arm64 qt5-qmake-bin qtbase5-dev:arm64 qtbase5-dev-tools qtchooser qttools5-dev-tools x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff isoquery glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 cups-common cups-common:arm64 rng-tools:arm64 gnutls-bin:arm64 krb5-doc krb5-user krb5-doc:arm64 krb5-user:arm64 libvisual-0.4-plugins gstreamer1.0-tools pciutils libthai0 libthai0:arm64 qt5-image-formats-plugins qtwayland5 qt5-image-formats-plugins:arm64 qtwayland5:arm64 qt5-qmltooling-plugins lm-sensors lm-sensors:arm64 libstdc++-8-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc:arm64 libxcb-doc:arm64 libxext-doc:arm64 m4-doc apparmor less www-browser libmail-box-perl qt5-doc default-libmysqlclient-dev:arm64 firebird-dev:arm64 libegl1-mesa-dev:arm64 libpq-dev:arm64 libsqlite3-dev:arm64 unixodbc-dev:arm64 Recommended packages: curl | wget | lynx libpam-cap dbus dbus:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libglib2.0-data:arm64 shared-mime-info:arm64 xdg-user-dirs:arm64 libgpg-error-l10n:arm64 gstreamer1.0-plugins-base krb5-locales krb5-locales:arm64 libgpm2 qttranslations5-l10n qttranslations5-l10n:arm64 libqt5svg5 qt5-gtk-platformtheme libqt5svg5:arm64 qt5-gtk-platformtheme:arm64 geoclue-2.0 libqt5sql5-sqlite:arm64 | libqt5sql5-mysql:arm64 | libqt5sql5-odbc:arm64 | libqt5sql5-psql:arm64 | libqt5sql5-tds:arm64 | libqt5sql5-ibase:arm64 libltdl-dev uuid-runtime:arm64 libwacom-bin libwacom-bin:arm64 libmail-sendmail-perl libqt5opengl5-dev:arm64 The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz fontconfig fontconfig-config fonts-dejavu-core gcc-8-base:arm64 gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libavahi-client3 libavahi-client3:arm64 libavahi-common-data libavahi-common-data:arm64 libavahi-common3 libavahi-common3:arm64 libblkid1:arm64 libbrotli1 libbsd0 libbsd0:arm64 libc6:arm64 libc6-dev:arm64 libcap2 libcap2-bin libclang1-7 libcom-err2:arm64 libcroco3 libcups2 libcups2:arm64 libdbus-1-3 libdbus-1-3:arm64 libdouble-conversion1 libdouble-conversion1:arm64 libdrm-amdgpu1 libdrm-amdgpu1:arm64 libdrm-common libdrm-dev:arm64 libdrm-etnaviv1:arm64 libdrm-freedreno1:arm64 libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:arm64 libdrm-radeon1 libdrm-radeon1:arm64 libdrm-tegra0:arm64 libdrm2 libdrm2:arm64 libedit2 libedit2:arm64 libegl-mesa0 libegl-mesa0:arm64 libegl1 libegl1:arm64 libelf1 libelf1:arm64 libevdev2 libevdev2:arm64 libexpat1 libexpat1:arm64 libffi6:arm64 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1:arm64 libfreetype6 libfreetype6:arm64 libgbm1 libgbm1:arm64 libgcc-8-dev:arm64 libgcc1:arm64 libgcrypt20:arm64 libgl1 libgl1:arm64 libgl1-mesa-dev:arm64 libgl1-mesa-dri libgl1-mesa-dri:arm64 libglapi-mesa libglapi-mesa:arm64 libgles1:arm64 libgles2:arm64 libglib2.0-0 libglib2.0-0:arm64 libglu1-mesa:arm64 libglu1-mesa-dev:arm64 libglvnd-core-dev:arm64 libglvnd-dev:arm64 libglvnd0 libglvnd0:arm64 libglx-mesa0 libglx-mesa0:arm64 libglx0 libglx0:arm64 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgpg-error0:arm64 libgraphite2-3 libgraphite2-3:arm64 libgssapi-krb5-2 libgssapi-krb5-2:arm64 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:arm64 libharfbuzz0b libharfbuzz0b:arm64 libhogweed4:arm64 libhyphen0 libice6 libice6:arm64 libicu63:arm64 libidn2-0:arm64 libinput-bin libinput10 libinput10:arm64 libitm1:arm64 libjpeg62-turbo libjpeg62-turbo:arm64 libk5crypto3 libk5crypto3:arm64 libkeyutils1 libkeyutils1:arm64 libkrb5-3 libkrb5-3:arm64 libkrb5support0 libkrb5support0:arm64 libllvm7 libllvm7:arm64 liblsan0:arm64 liblz4-1:arm64 liblzma5:arm64 libmount1:arm64 libmtdev1 libmtdev1:arm64 libncurses6 libnettle6:arm64 libopengl0:arm64 liborc-0.4-0 libp11-kit0:arm64 libpciaccess0 libpcre2-16-0 libpcre2-16-0:arm64 libpcre3:arm64 libpipeline1 libpng16-16 libpng16-16:arm64 libpthread-stubs0-dev:arm64 libqt5concurrent5:arm64 libqt5core5a libqt5core5a:arm64 libqt5dbus5 libqt5dbus5:arm64 libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:arm64 libqt5help5 libqt5network5 libqt5network5:arm64 libqt5positioning5 libqt5printsupport5 libqt5printsupport5:arm64 libqt5qml5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:arm64 libqt5sql5-sqlite libqt5test5:arm64 libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:arm64 libqt5xml5 libqt5xml5:arm64 libselinux1:arm64 libsensors-config libsensors5 libsensors5:arm64 libsigsegv2 libsm6 libsm6:arm64 libsqlite3-0 libssl1.1 libssl1.1:arm64 libstdc++-8-dev:arm64 libstdc++6:arm64 libsystemd0:arm64 libtasn1-6:arm64 libtinfo6:arm64 libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 libudev1:arm64 libunistring2:arm64 libuuid1:arm64 libvulkan-dev:arm64 libvulkan1:arm64 libwacom-common libwacom2 libwacom2:arm64 libwayland-client0 libwayland-client0:arm64 libwayland-server0 libwayland-server0:arm64 libwebp6 libwoff1 libx11-6 libx11-6:arm64 libx11-data libx11-dev:arm64 libx11-xcb-dev:arm64 libx11-xcb1 libx11-xcb1:arm64 libxau-dev:arm64 libxau6 libxau6:arm64 libxcb-dri2-0 libxcb-dri2-0:arm64 libxcb-dri2-0-dev:arm64 libxcb-dri3-0 libxcb-dri3-0:arm64 libxcb-dri3-dev:arm64 libxcb-glx0 libxcb-glx0:arm64 libxcb-glx0-dev:arm64 libxcb-icccm4 libxcb-icccm4:arm64 libxcb-image0 libxcb-image0:arm64 libxcb-keysyms1 libxcb-keysyms1:arm64 libxcb-present-dev:arm64 libxcb-present0 libxcb-present0:arm64 libxcb-randr0 libxcb-randr0:arm64 libxcb-randr0-dev:arm64 libxcb-render-util0 libxcb-render-util0:arm64 libxcb-render0 libxcb-render0:arm64 libxcb-render0-dev:arm64 libxcb-shape0 libxcb-shape0:arm64 libxcb-shape0-dev:arm64 libxcb-shm0 libxcb-shm0:arm64 libxcb-sync-dev:arm64 libxcb-sync1 libxcb-sync1:arm64 libxcb-util0 libxcb-util0:arm64 libxcb-xfixes0 libxcb-xfixes0:arm64 libxcb-xfixes0-dev:arm64 libxcb-xinerama0 libxcb-xinerama0:arm64 libxcb-xkb1 libxcb-xkb1:arm64 libxcb1 libxcb1:arm64 libxcb1-dev:arm64 libxdamage-dev:arm64 libxdamage1 libxdamage1:arm64 libxdmcp-dev:arm64 libxdmcp6 libxdmcp6:arm64 libxext-dev:arm64 libxext6 libxext6:arm64 libxfixes-dev:arm64 libxfixes3 libxfixes3:arm64 libxi6 libxi6:arm64 libxkbcommon-x11-0 libxkbcommon-x11-0:arm64 libxkbcommon0 libxkbcommon0:arm64 libxrender1 libxrender1:arm64 libxshmfence-dev:arm64 libxshmfence1 libxshmfence1:arm64 libxslt1.1 libxxf86vm-dev:arm64 libxxf86vm1 libxxf86vm1:arm64 linux-libc-dev:arm64 lsb-base m4 man-db mesa-common-dev:arm64 po-debconf qdoc-qt5 qt5-assistant qt5-qmake:arm64 qt5-qmake-bin qtbase5-dev:arm64 qtbase5-dev-tools qtchooser qttools5-dev-tools sbuild-build-depends-clustalx-dummy:arm64 x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:arm64 0 upgraded, 328 newly installed, 0 to remove and 0 not upgraded. Need to get 151 MB of archives. After this operation, 899 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Q88HIb/apt_archive ./ sbuild-build-depends-clustalx-dummy 0.invalid.0 [892 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2 amd64 1:2.25-2 [17.6 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2-bin amd64 1:2.25-2 [28.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer1.0-0 amd64 1.14.4-1 [2103 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 liborc-0.4-0 amd64 1:0.4.28-3.1 [141 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 iso-codes all 4.2-1 [2713 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.14.4-1 [1936 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhyphen0 amd64 2.8.8-7 [32.5 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.36-5 [292 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libdouble-conversion1 amd64 3.1.0-3 [39.4 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libpcre2-16-0 amd64 10.32-5 [202 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5core5a amd64 5.11.3+dfsg1-1 [1943 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.6-1 [105 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.9.1-3 [379 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-server0 amd64 1.16.0-1 [32.5 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libgbm1 amd64 18.3.4-2 [67.5 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libglapi-mesa amd64 18.3.4-2 [65.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-client0 amd64 1.16.0-1 [26.4 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-xcb1 amd64 2:1.6.7-1 [190 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xfixes0 amd64 1.13.1-2 [103 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libegl-mesa0 amd64 18.3.4-2 [135 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libegl1 amd64 1.1.0-1 [33.6 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.7-1 [298 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.7-1 [754 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm7 amd64 1:7.0.1-8 [13.0 MB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1-mesa-dri amd64 18.3.4-2 [6681 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libglx-mesa0 amd64 18.3.4-2 [180 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 lsb-base all 10.2019031300 [28.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libevdev2 amd64 1.6.0+dfsg-1 [31.0 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libmtdev1 amd64 1.1.5-1+b1 [22.3 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libgudev-1.0-0 amd64 232-2 [13.6 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom-common all 0.32-1 [39.1 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom2 amd64 0.32-1 [18.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libinput-bin amd64 1.12.6-2 [16.7 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libinput10 amd64 1.12.6-2 [107 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libdbus-1-3 amd64 1.12.12-1 [212 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5dbus5 amd64 5.11.3+dfsg1-1 [230 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-1 [1531 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5network5 amd64 5.11.3+dfsg1-1 [671 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-util0 amd64 0.3.8-3+b2 [23.0 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-1+b2 [24.4 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-randr0 amd64 1.13.1-2 [110 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shape0 amd64 1.13.1-2 [99.5 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xinerama0 amd64 1.13.1-2 [98.9 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xkb1 amd64 1.13.1-2 [123 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 xkb-data all 2.26-2 [681 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon0 amd64 0.8.2-1 [123 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon-x11-0 amd64 0.8.2-1 [39.4 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5gui5 amd64 5.11.3+dfsg1-1 [2843 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5positioning5 amd64 5.11.3+dfsg-2 [191 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common-data amd64 0.7-4+b1 [122 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common3 amd64 0.7-4+b1 [54.6 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-client3 amd64 0.7-4+b1 [58.1 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-2 [65.6 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-2 [121 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-2 [368 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-2 [158 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 libcups2 amd64 2.2.10-5 [324 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5widgets5 amd64 5.11.3+dfsg1-1 [2263 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5printsupport5 amd64 5.11.3+dfsg1-1 [216 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5qml5 amd64 5.11.3-4 [1222 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quick5 amd64 5.11.3-4 [1278 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sensors5 amd64 5.11.3-2 [116 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webchannel5 amd64 5.11.3-2 [48.8 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-2 [640 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libwebp6 amd64 0.6.1-2 [263 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.7-2 [270 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 libwoff1 amd64 1.0.2-1 [43.2 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 libxslt1.1 amd64 1.1.32-2 [236 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webkit5 amd64 5.212.0~alpha2-21 [11.7 MB] Get:123 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-8-base arm64 8.3.0-4 [190 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:8.3.0-4 [34.4 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.28-8 [2522 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main arm64 libgpg-error0 arm64 1.35-1 [68.4 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main arm64 libgcrypt20 arm64 1.8.4-5 [487 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main arm64 liblz4-1 arm64 1.8.3-1 [50.2 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma5 arm64 5.2.4-1 [149 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main arm64 libsystemd0 arm64 241-2 [311 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 8.3.0-4 [363 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 8.3.0-4 [327 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 8.3.0-4 [8804 B] Get:153 http://debian.oregonstate.edu/debian unstable/main arm64 libavahi-common-data arm64 0.7-4+b1 [122 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main arm64 libavahi-common3 arm64 0.7-4+b1 [53.5 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main arm64 libdbus-1-3 arm64 1.12.12-1 [203 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main arm64 libavahi-client3 arm64 0.7-4+b1 [56.8 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main arm64 libuuid1 arm64 2.33.1-0.1 [77.8 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main arm64 libblkid1 arm64 2.33.1-0.1 [186 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 4.19.28-2 [1137 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.28-8 [2325 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main amd64 libclang1-7 amd64 1:7.0.1-8 [5993 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main arm64 libcom-err2 arm64 1.45.0-1 [68.9 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main arm64 libgmp10 arm64 2:6.1.2+dfsg-4 [226 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main arm64 libnettle6 arm64 3.4.1-1 [225 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main arm64 libhogweed4 arm64 3.4.1-1 [138 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main arm64 libunistring2 arm64 0.9.10-1 [363 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main arm64 libidn2-0 arm64 2.0.5-1 [75.4 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main arm64 libffi6 arm64 3.2.1-9 [19.3 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main arm64 libp11-kit0 arm64 0.23.15-2 [302 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main arm64 libtasn1-6 arm64 4.13-3 [47.8 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main arm64 libgnutls30 arm64 3.6.7-2 [1060 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5support0 arm64 1.17-2 [64.7 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main arm64 libk5crypto3 arm64 1.17-2 [123 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main arm64 libssl1.1 arm64 1.1.1b-1 [1376 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5-3 arm64 1.17-2 [352 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.17-2 [150 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-1 [89.3 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main arm64 libcups2 arm64 2.2.10-5 [309 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main arm64 libdouble-conversion1 arm64 3.1.0-3 [36.0 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main arm64 libdrm2 arm64 2.4.97-1 [39.5 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main arm64 libdrm-amdgpu1 arm64 2.4.97-1 [26.6 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main arm64 libdrm-radeon1 arm64 2.4.97-1 [30.0 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main arm64 libdrm-nouveau2 arm64 2.4.97-1 [25.5 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main arm64 libdrm-freedreno1 arm64 2.4.97-1 [27.8 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main arm64 libdrm-tegra0 arm64 2.4.97-1 [15.8 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main arm64 libdrm-etnaviv1 arm64 2.4.97-1 [21.0 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main arm64 libdrm-dev arm64 2.4.97-1 [135 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main arm64 libtinfo6 arm64 6.1+20181013-2 [320 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main arm64 libedit2 arm64 3.1-20181209-1 [91.2 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main arm64 libexpat1 arm64 2.2.6-1 [85.9 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main arm64 libwayland-server0 arm64 1.16.0-1 [31.8 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main arm64 libgbm1 arm64 18.3.4-2 [66.8 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main arm64 libglapi-mesa arm64 18.3.4-2 [74.3 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main arm64 libwayland-client0 arm64 1.16.0-1 [25.9 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main arm64 libx11-xcb1 arm64 2:1.6.7-1 [190 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main arm64 libxau6 arm64 1:1.0.8-1+b2 [19.3 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb1 arm64 1.13.1-2 [135 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-dri2-0 arm64 1.13.1-2 [101 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-dri3-0 arm64 1.13.1-2 [100 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-present0 arm64 1.13.1-2 [99.1 kB] Get:204 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-sync1 arm64 1.13.1-2 [102 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-xfixes0 arm64 1.13.1-2 [103 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main arm64 libxshmfence1 arm64 1.3-1 [8712 B] Get:207 http://debian.oregonstate.edu/debian unstable/main arm64 libegl-mesa0 arm64 18.3.4-2 [129 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main arm64 libelf1 arm64 0.176-1 [160 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main arm64 libevdev2 arm64 1.6.0+dfsg-1 [29.2 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main arm64 libpng16-16 arm64 1.6.36-5 [286 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main arm64 libfreetype6 arm64 2.9.1-3 [355 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main arm64 libfontconfig1 arm64 2.13.1-2 [343 kB] Get:213 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 8.3.0-4 [67.8 kB] Get:214 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 8.3.0-4 [24.0 kB] Get:215 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 8.3.0-4 [118 kB] Get:216 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 8.3.0-4 [261 kB] Get:217 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 8.3.0-4 [111 kB] Get:218 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-8-dev arm64 8.3.0-4 [834 kB] Get:219 http://debian.oregonstate.edu/debian unstable/main arm64 libx11-6 arm64 2:1.6.7-1 [735 kB] Get:220 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:221 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get:222 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2018.4-4 [3128 B] Get:223 http://debian.oregonstate.edu/debian unstable/main arm64 libxau-dev arm64 1:1.0.8-1+b2 [22.8 kB] Get:224 http://debian.oregonstate.edu/debian unstable/main arm64 libxdmcp-dev arm64 1:1.1.2-3 [41.2 kB] Get:225 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:226 http://debian.oregonstate.edu/debian unstable/main arm64 libpthread-stubs0-dev arm64 0.4-1 [5336 B] Get:227 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb1-dev arm64 1.13.1-2 [174 kB] Get:228 http://debian.oregonstate.edu/debian unstable/main arm64 libx11-dev arm64 2:1.6.7-1 [816 kB] Get:229 http://debian.oregonstate.edu/debian unstable/main arm64 mesa-common-dev arm64 18.3.4-2 [609 kB] Get:230 http://debian.oregonstate.edu/debian unstable/main arm64 libglvnd0 arm64 1.1.0-1 [42.4 kB] Get:231 http://debian.oregonstate.edu/debian unstable/main arm64 libglvnd-core-dev arm64 1.1.0-1 [13.2 kB] Get:232 http://debian.oregonstate.edu/debian unstable/main arm64 libegl1 arm64 1.1.0-1 [32.8 kB] Get:233 http://debian.oregonstate.edu/debian unstable/main arm64 libgles1 arm64 1.1.0-1 [14.3 kB] Get:234 http://debian.oregonstate.edu/debian unstable/main arm64 libgles2 arm64 1.1.0-1 [19.8 kB] Get:235 http://debian.oregonstate.edu/debian unstable/main arm64 libxext6 arm64 2:1.3.3-1+b2 [48.6 kB] Get:236 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-glx0 arm64 1.13.1-2 [116 kB] Get:237 http://debian.oregonstate.edu/debian unstable/main arm64 libxfixes3 arm64 1:5.0.3-1 [21.0 kB] Get:238 http://debian.oregonstate.edu/debian unstable/main arm64 libxdamage1 arm64 1:1.1.4-3+b3 [14.8 kB] Get:239 http://debian.oregonstate.edu/debian unstable/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b2 [20.1 kB] Get:240 http://debian.oregonstate.edu/debian unstable/main arm64 libllvm7 arm64 1:7.0.1-8 [10.8 MB] Get:241 http://debian.oregonstate.edu/debian unstable/main arm64 libsensors5 arm64 1:3.5.0-3 [51.8 kB] Get:242 http://debian.oregonstate.edu/debian unstable/main arm64 libgl1-mesa-dri arm64 18.3.4-2 [4910 kB] Get:243 http://debian.oregonstate.edu/debian unstable/main arm64 libglx-mesa0 arm64 18.3.4-2 [180 kB] Get:244 http://debian.oregonstate.edu/debian unstable/main arm64 libglx0 arm64 1.1.0-1 [29.0 kB] Get:245 http://debian.oregonstate.edu/debian unstable/main arm64 libgl1 arm64 1.1.0-1 [92.5 kB] Get:246 http://debian.oregonstate.edu/debian unstable/main arm64 libopengl0 arm64 1.1.0-1 [34.4 kB] Get:247 http://debian.oregonstate.edu/debian unstable/main arm64 libglvnd-dev arm64 1.1.0-1 [5128 B] Get:248 http://debian.oregonstate.edu/debian unstable/main arm64 libx11-xcb-dev arm64 2:1.6.7-1 [192 kB] Get:249 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-dri3-dev arm64 1.13.1-2 [101 kB] Get:250 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-randr0 arm64 1.13.1-2 [110 kB] Get:251 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-render0 arm64 1.13.1-2 [108 kB] Get:252 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-render0-dev arm64 1.13.1-2 [113 kB] Get:253 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-randr0-dev arm64 1.13.1-2 [115 kB] Get:254 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-shape0 arm64 1.13.1-2 [99.6 kB] Get:255 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-shape0-dev arm64 1.13.1-2 [101 kB] Get:256 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-xfixes0-dev arm64 1.13.1-2 [106 kB] Get:257 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-sync-dev arm64 1.13.1-2 [105 kB] Get:258 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-present-dev arm64 1.13.1-2 [101 kB] Get:259 http://debian.oregonstate.edu/debian unstable/main arm64 libxshmfence-dev arm64 1.3-1 [8212 B] Get:260 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-dri2-0-dev arm64 1.13.1-2 [102 kB] Get:261 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-glx0-dev arm64 1.13.1-2 [122 kB] Get:262 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-fixes-dev all 1:2018.4-4 [3140 B] Get:263 http://debian.oregonstate.edu/debian unstable/main arm64 libxfixes-dev arm64 1:5.0.3-1 [23.2 kB] Get:264 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-damage-dev all 1:2018.4-4 [3140 B] Get:265 http://debian.oregonstate.edu/debian unstable/main arm64 libxdamage-dev arm64 1:1.1.4-3+b3 [14.8 kB] Get:266 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B] Get:267 http://debian.oregonstate.edu/debian unstable/main arm64 libxext-dev arm64 2:1.3.3-1+b2 [104 kB] Get:268 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xf86vidmode-dev all 2018.4-4 [3140 B] Get:269 http://debian.oregonstate.edu/debian unstable/main arm64 libxxf86vm-dev arm64 1:1.1.4-1+b2 [25.1 kB] Get:270 http://debian.oregonstate.edu/debian unstable/main arm64 libgl1-mesa-dev arm64 18.3.4-2 [47.7 kB] Get:271 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre3 arm64 2:8.39-12 [317 kB] Get:272 http://debian.oregonstate.edu/debian unstable/main arm64 libselinux1 arm64 2.8-1+b1 [76.1 kB] Get:273 http://debian.oregonstate.edu/debian unstable/main arm64 libmount1 arm64 2.33.1-0.1 [199 kB] Get:274 http://debian.oregonstate.edu/debian unstable/main arm64 libglib2.0-0 arm64 2.58.3-1 [1184 kB] Get:275 http://debian.oregonstate.edu/debian unstable/main arm64 libglu1-mesa arm64 9.0.0-2.1+b3 [146 kB] Get:276 http://debian.oregonstate.edu/debian unstable/main arm64 libglu1-mesa-dev arm64 9.0.0-2.1+b3 [186 kB] Get:277 http://debian.oregonstate.edu/debian unstable/main arm64 libgraphite2-3 arm64 1.3.13-7 [75.8 kB] Get:278 http://debian.oregonstate.edu/debian unstable/main arm64 libudev1 arm64 241-2 [143 kB] Get:279 http://debian.oregonstate.edu/debian unstable/main arm64 libgudev-1.0-0 arm64 232-2 [11.6 kB] Get:280 http://debian.oregonstate.edu/debian unstable/main arm64 libharfbuzz0b arm64 2.3.1-1 [1155 kB] Get:281 http://debian.oregonstate.edu/debian unstable/main arm64 libice6 arm64 2:1.0.9-2 [52.0 kB] Get:282 http://debian.oregonstate.edu/debian unstable/main arm64 libicu63 arm64 63.1-6 [8153 kB] Get:283 http://debian.oregonstate.edu/debian unstable/main arm64 libmtdev1 arm64 1.1.5-1+b1 [21.3 kB] Get:284 http://debian.oregonstate.edu/debian unstable/main arm64 libwacom2 arm64 0.32-1 [17.9 kB] Get:285 http://debian.oregonstate.edu/debian unstable/main arm64 libinput10 arm64 1.12.6-2 [97.6 kB] Get:286 http://debian.oregonstate.edu/debian unstable/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get:287 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre2-16-0 arm64 10.32-5 [176 kB] Get:288 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5core5a arm64 5.11.3+dfsg1-1 [1796 kB] Get:289 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5concurrent5 arm64 5.11.3+dfsg1-1 [56.4 kB] Get:290 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5dbus5 arm64 5.11.3+dfsg1-1 [217 kB] Get:291 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5xml5 amd64 5.11.3+dfsg1-1 [127 kB] Get:292 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designer5 amd64 5.11.3-4 [2783 kB] Get:293 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designercomponents5 amd64 5.11.3-4 [711 kB] Get:294 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5network5 arm64 5.11.3+dfsg1-1 [631 kB] Get:295 http://debian.oregonstate.edu/debian unstable/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get:296 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-icccm4 arm64 0.4.1-1.1 [26.9 kB] Get:297 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-shm0 arm64 1.13.1-2 [99.3 kB] Get:298 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-util0 arm64 0.3.8-3+b2 [22.5 kB] Get:299 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-image0 arm64 0.4.0-1+b2 [23.2 kB] Get:300 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-keysyms1 arm64 0.4.0-1+b2 [16.0 kB] Get:301 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-render-util0 arm64 0.3.9-1+b1 [17.5 kB] Get:302 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-xinerama0 arm64 1.13.1-2 [98.9 kB] Get:303 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-xkb1 arm64 1.13.1-2 [122 kB] Get:304 http://debian.oregonstate.edu/debian unstable/main arm64 libxi6 arm64 2:1.7.9-1 [79.0 kB] Get:305 http://debian.oregonstate.edu/debian unstable/main arm64 libxkbcommon0 arm64 0.8.2-1 [118 kB] Get:306 http://debian.oregonstate.edu/debian unstable/main arm64 libxkbcommon-x11-0 arm64 0.8.2-1 [39.0 kB] Get:307 http://debian.oregonstate.edu/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get:308 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5gui5 arm64 5.11.3+dfsg1-1 [2578 kB] Get:309 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5 amd64 5.11.3+dfsg1-1 [144 kB] Get:310 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5help5 amd64 5.11.3-4 [149 kB] Get:311 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5widgets5 arm64 5.11.3+dfsg1-1 [2139 kB] Get:312 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5printsupport5 arm64 5.11.3+dfsg1-1 [209 kB] Get:313 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quickwidgets5 amd64 5.11.3-4 [50.6 kB] Get:314 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5sql5 arm64 5.11.3+dfsg1-1 [139 kB] Get:315 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5-sqlite amd64 5.11.3+dfsg1-1 [71.4 kB] Get:316 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5test5 arm64 5.11.3+dfsg1-1 [141 kB] Get:317 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5xml5 arm64 5.11.3+dfsg1-1 [122 kB] Get:318 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-8-dev arm64 8.3.0-4 [1502 kB] Get:319 http://debian.oregonstate.edu/debian unstable/main arm64 libvulkan1 arm64 1.1.101.0-2 [89.7 kB] Get:320 http://debian.oregonstate.edu/debian unstable/main arm64 libvulkan-dev arm64 1.1.101.0-2 [391 kB] Get:321 http://debian.oregonstate.edu/debian unstable/main amd64 qtchooser amd64 66-1 [26.3 kB] Get:322 http://debian.oregonstate.edu/debian unstable/main amd64 qdoc-qt5 amd64 5.11.3-4 [467 kB] Get:323 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-assistant amd64 5.11.3-4 [758 kB] Get:324 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-qmake-bin amd64 5.11.3+dfsg1-1 [1002 kB] Get:325 http://debian.oregonstate.edu/debian unstable/main arm64 qt5-qmake arm64 5.11.3+dfsg1-1 [212 kB] Get:326 http://debian.oregonstate.edu/debian unstable/main amd64 qtbase5-dev-tools amd64 5.11.3+dfsg1-1 [769 kB] Get:327 http://debian.oregonstate.edu/debian unstable/main arm64 qtbase5-dev arm64 5.11.3+dfsg1-1 [1011 kB] Get:328 http://debian.oregonstate.edu/debian unstable/main amd64 qttools5-dev-tools amd64 5.11.3-4 [1069 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 151 MB in 2s (68.9 MB/s) Selecting previously unselected package libbsd0:amd64. 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Preparing to unpack .../199-sbuild-build-depends-clustalx-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-clustalx-dummy:arm64 (0.invalid.0) ... Setting up libexpat1:amd64 (2.2.6-1) ... Setting up libexpat1:arm64 (2.2.6-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libgraphite2-3:amd64 (1.3.13-7) ... Setting up libgraphite2-3:arm64 (1.3.13-7) ... Setting up libwayland-server0:amd64 (1.16.0-1) ... Setting up lsb-base (10.2019031300) ... Setting up libx11-xcb1:amd64 (2:1.6.7-1) ... Setting up libx11-xcb1:arm64 (2:1.6.7-1) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libxau6:arm64 (1:1.0.8-1+b2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libkeyutils1:arm64 (1.6-6) ... Setting up libglvnd-core-dev:arm64 (1.1.0-1) ... Setting up libhyphen0:amd64 (2.8.8-7) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up libglvnd0:amd64 (1.1.0-1) ... Setting up libglvnd0:arm64 (1.1.0-1) ... Setting up libssl1.1:amd64 (1.1.1b-1) ... Setting up libssl1.1:arm64 (1.1.1b-1) ... Setting up libbrotli1:amd64 (1.0.7-2) ... Setting up libsqlite3-0:amd64 (3.27.2-2) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.5.0-3) ... Setting up libunistring2:arm64 (0.9.10-1) ... Setting up linux-libc-dev:arm64 (4.19.28-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up xkb-data (2.26-2) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-1) ... Setting up libffi6:arm64 (3.2.1-9) ... Setting up libidn2-0:arm64 (2.0.5-1) ... Setting up libcom-err2:arm64 (1.45.0-1) ... Setting up libgomp1:arm64 (8.3.0-4) ... Setting up libpthread-stubs0-dev:arm64 (0.4-1) ... Setting up libpcre2-16-0:amd64 (10.32-5) ... Setting up libpcre2-16-0:arm64 (10.32-5) ... Setting up libsystemd0:arm64 (241-2) ... Setting up libcap2:amd64 (1:2.25-2) ... Setting up libopengl0:arm64 (1.1.0-1) ... Setting up libkrb5support0:amd64 (1.17-2) ... Setting up libkrb5support0:arm64 (1.17-2) ... Setting up libcap2-bin (1:2.25-2) ... Setting up xtrans-dev (1.3.5-1) ... Setting up libpcre3:arm64 (2:8.39-12) ... Setting up autotools-dev (20180224.1) ... Setting up libgles2:arm64 (1.1.0-1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up libjpeg62-turbo:arm64 (1:1.5.2-2+b1) ... Setting up qt5-qmake-bin (5.11.3+dfsg1-1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libgmp10:arm64 (2:6.1.2+dfsg-4) ... Setting up libavahi-common-data:amd64 (0.7-4+b1) ... Setting up libavahi-common-data:arm64 (0.7-4+b1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libgles1:arm64 (1.1.0-1) ... Setting up libdbus-1-3:amd64 (1.12.12-1) ... Setting up libdbus-1-3:arm64 (1.12.12-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libp11-kit0:arm64 (0.23.15-2) ... Setting up libpng16-16:amd64 (1.6.36-5) ... Setting up libpng16-16:arm64 (1.6.36-5) ... Setting up libatomic1:arm64 (8.3.0-4) ... Setting up libuuid1:arm64 (2.33.1-0.1) ... Setting up liborc-0.4-0:amd64 (1:0.4.28-3.1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libsensors5:amd64 (1:3.5.0-3) ... Setting up libsensors5:arm64 (1:3.5.0-3) ... Setting up libk5crypto3:amd64 (1.17-2) ... Setting up libk5crypto3:arm64 (1.17-2) ... Setting up libnettle6:arm64 (3.4.1-1) ... Setting up libglapi-mesa:amd64 (18.3.4-2) ... Setting up libglapi-mesa:arm64 (18.3.4-2) ... Setting up libmtdev1:amd64 (1.1.5-1+b1) ... Setting up libmtdev1:arm64 (1.1.5-1+b1) ... Setting up libvulkan1:arm64 (1.1.101.0-2) ... Setting up libudev1:arm64 (241-2) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libxshmfence1:arm64 (1.3-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libxslt1.1:amd64 (1.1.32-2) ... Setting up libtasn1-6:arm64 (4.13-3) ... Setting up libc6-dev:arm64 (2.28-8) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libkrb5-3:amd64 (1.17-2) ... Setting up libkrb5-3:arm64 (1.17-2) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libelf1:arm64 (0.176-1) ... Setting up libevdev2:amd64 (1.6.0+dfsg-1) ... Setting up libevdev2:arm64 (1.6.0+dfsg-1) ... Setting up libdouble-conversion1:amd64 (3.1.0-3) ... Setting up libblkid1:arm64 (2.33.1-0.1) ... Setting up iso-codes (4.2-1) ... Setting up libstdc++6:arm64 (8.3.0-4) ... Setting up libgudev-1.0-0:amd64 (232-2) ... Setting up liblsan0:arm64 (8.3.0-4) ... Setting up qtchooser (66-1) ... Setting up libgstreamer1.0-0:amd64 (1.14.4-1) ... Setcap worked! gst-ptp-helper is not suid! Setting up libitm1:arm64 (8.3.0-4) ... Setting up libtinfo6:arm64 (6.1+20181013-2) ... Setting up libwacom-common (0.32-1) ... Setting up libtsan0:arm64 (8.3.0-4) ... Setting up libxkbcommon0:amd64 (0.8.2-1) ... Setting up libxkbcommon0:arm64 (0.8.2-1) ... Setting up libwayland-client0:amd64 (1.16.0-1) ... Setting up libwayland-client0:arm64 (1.16.0-1) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libwayland-server0:arm64 (1.16.0-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libice6:arm64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libvulkan-dev:arm64 (1.1.101.0-2) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libxcb1:arm64 (1.13.1-2) ... Setting up gettext (0.19.8.1-9) ... Setting up libxcb-xfixes0:amd64 (1.13.1-2) ... Setting up libxcb-xfixes0:arm64 (1.13.1-2) ... Setting up libxau-dev:arm64 (1:1.0.8-1+b2) ... Setting up qt5-qmake:arm64 (5.11.3+dfsg1-1) ... Setting up libwoff1:amd64 (1.0.2-1) ... Setting up libtool (2.4.6-10) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libxcb-render0:arm64 (1.13.1-2) ... Setting up libxshmfence-dev:arm64 (1.3-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libhogweed4:arm64 (3.4.1-1) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up libxcb-glx0:arm64 (1.13.1-2) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libedit2:arm64 (3.1-20181209-1) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libxcb-keysyms1:arm64 (0.4.0-1+b2) ... Setting up libxcb-shape0:amd64 (1.13.1-2) ... Setting up libxcb-shape0:arm64 (1.13.1-2) ... Setting up libavahi-common3:amd64 (0.7-4+b1) ... Setting up libavahi-common3:arm64 (0.7-4+b1) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up libxcb-render-util0:arm64 (0.3.9-1+b1) ... Setting up libgstreamer-plugins-base1.0-0:amd64 (1.14.4-1) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libxcb-shm0:arm64 (1.13.1-2) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1) ... Setting up libxcb-icccm4:arm64 (0.4.1-1.1) ... Setting up libxcb-util0:amd64 (0.3.8-3+b2) ... Setting up libxcb-util0:arm64 (0.3.8-3+b2) ... Setting up libicu63:arm64 (63.1-6) ... Setting up libxcb-xkb1:amd64 (1.13.1-2) ... Setting up libxcb-xkb1:arm64 (1.13.1-2) ... Setting up libxcb-image0:amd64 (0.4.0-1+b2) ... Setting up libxcb-image0:arm64 (0.4.0-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up libxcb-present0:arm64 (1.13.1-2) ... Setting up libselinux1:arm64 (2.8-1+b1) ... Setting up libasan5:arm64 (8.3.0-4) ... Setting up libxdmcp-dev:arm64 (1:1.1.2-3) ... Setting up libxcb-xinerama0:amd64 (1.13.1-2) ... Setting up libxcb-xinerama0:arm64 (1.13.1-2) ... Setting up libgnutls30:arm64 (3.6.7-2) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up libfreetype6:amd64 (2.9.1-3) ... Setting up libfreetype6:arm64 (2.9.1-3) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up libxcb-sync1:arm64 (1.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:amd64 (0.8.2-1) ... Setting up libxkbcommon-x11-0:arm64 (0.8.2-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-2) ... Setting up libgssapi-krb5-2:arm64 (1.17-2) ... Setting up libqt5core5a:amd64 (5.11.3+dfsg1-1) ... Setting up autoconf (2.69-11) ... Setting up libubsan1:arm64 (8.3.0-4) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libxcb-dri2-0:arm64 (1.13.1-2) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up libdrm2:arm64 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libqt5dbus5:amd64 (5.11.3+dfsg1-1) ... Setting up libmount1:arm64 (2.33.1-0.1) ... Setting up libxcb-randr0:amd64 (1.13.1-2) ... Setting up libxcb-randr0:arm64 (1.13.1-2) ... Setting up libllvm7:amd64 (1:7.0.1-8) ... Setting up libllvm7:arm64 (1:7.0.1-8) ... Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up libx11-6:arm64 (2:1.6.7-1) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libfontconfig1:arm64 (2.13.1-2) ... Setting up libclang1-7 (1:7.0.1-8) ... Setting up libqt5sensors5:amd64 (5.11.3-2) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libwacom2:amd64 (0.32-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.7-4+b1) ... Setting up libavahi-client3:arm64 (0.7-4+b1) ... Setting up libdouble-conversion1:arm64 (3.1.0-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up libdrm-amdgpu1:arm64 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up libxcb-dri3-0:arm64 (1.13.1-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up libdrm-nouveau2:arm64 (2.4.97-1) ... Setting up libdrm-etnaviv1:arm64 (2.4.97-1) ... Setting up libxcb1-dev:arm64 (1.13.1-2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libgbm1:amd64 (18.3.4-2) ... Setting up libgbm1:arm64 (18.3.4-2) ... Setting up libglib2.0-0:arm64 (2.58.3-1) ... /var/lib/dpkg/info/libglib2.0-0:arm64.postinst: 47: /var/lib/dpkg/info/libglib2.0-0:arm64.postinst: /usr/lib/aarch64-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:arm64.postinst: 50: /var/lib/dpkg/info/libglib2.0-0:arm64.postinst: /usr/lib/aarch64-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up libdrm-radeon1:arm64 (2.4.97-1) ... Setting up qdoc-qt5 (5.11.3-4) ... Setting up po-debconf (1.0.21) ... Setting up libqt5positioning5:amd64 (5.11.3+dfsg-2) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.4-2) ... Setting up libgl1-mesa-dri:arm64 (18.3.4-2) ... Setting up libx11-dev:arm64 (2:1.6.7-1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxext6:arm64 (2:1.3.3-1+b2) ... Setting up libxcb-dri3-dev:arm64 (1.13.1-2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libqt5network5:amd64 (5.11.3+dfsg1-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b2) ... Setting up libinput-bin (1.12.6-2) ... Setting up libqt5sql5:amd64 (5.11.3+dfsg1-1) ... Setting up qtbase5-dev-tools (5.11.3+dfsg1-1) ... Setting up libqt5xml5:amd64 (5.11.3+dfsg1-1) ... Setting up libegl-mesa0:amd64 (18.3.4-2) ... Setting up libegl-mesa0:arm64 (18.3.4-2) ... Setting up libxcb-dri2-0-dev:arm64 (1.13.1-2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libxfixes3:arm64 (1:5.0.3-1) ... Setting up libqt5qml5:amd64 (5.11.3-4) ... Setting up libdrm-freedreno1:arm64 (2.4.97-1) ... Setting up libqt5webchannel5:amd64 (5.11.3-2) ... Setting up libxcb-render0-dev:arm64 (1.13.1-2) ... Setting up libxcb-glx0-dev:arm64 (1.13.1-2) ... Setting up libdrm-tegra0:arm64 (2.4.97-1) ... Setting up libqt5core5a:arm64 (5.11.3+dfsg1-1) ... Setting up libgcc-8-dev:arm64 (8.3.0-4) ... Setting up libxcb-shape0-dev:arm64 (1.13.1-2) ... Setting up libxext-dev:arm64 (2:1.3.3-1+b2) ... Setting up libcups2:amd64 (2.2.10-5) ... Setting up libcups2:arm64 (2.2.10-5) ... Setting up libqt5dbus5:arm64 (5.11.3+dfsg1-1) ... Setting up libegl1:amd64 (1.1.0-1) ... Setting up libegl1:arm64 (1.1.0-1) ... Setting up libxcb-sync-dev:arm64 (1.13.1-2) ... Setting up libharfbuzz0b:arm64 (2.3.1-1) ... Setting up libxcb-xfixes0-dev:arm64 (1.13.1-2) ... Setting up libqt5test5:arm64 (5.11.3+dfsg1-1) ... Setting up libqt5concurrent5:arm64 (5.11.3+dfsg1-1) ... Setting up libgudev-1.0-0:arm64 (232-2) ... Setting up libstdc++-8-dev:arm64 (8.3.0-4) ... Setting up libinput10:amd64 (1.12.6-2) ... Setting up libx11-xcb-dev:arm64 (2:1.6.7-1) ... Setting up libdrm-dev:arm64 (2.4.97-1) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up libxdamage1:arm64 (1:1.1.4-3+b3) ... Setting up libqt5sql5-sqlite:amd64 (5.11.3+dfsg1-1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libxi6:arm64 (2:1.7.9-1) ... Setting up libxxf86vm-dev:arm64 (1:1.1.4-1+b2) ... Setting up libqt5network5:arm64 (5.11.3+dfsg1-1) ... Setting up libqt5sql5:arm64 (5.11.3+dfsg1-1) ... Setting up libxfixes-dev:arm64 (1:5.0.3-1) ... Setting up libqt5xml5:arm64 (5.11.3+dfsg1-1) ... Setting up libxcb-randr0-dev:arm64 (1.13.1-2) ... Setting up libxcb-present-dev:arm64 (1.13.1-2) ... Setting up mesa-common-dev:arm64 (18.3.4-2) ... Setting up libwacom2:arm64 (0.32-1) ... Setting up libxdamage-dev:arm64 (1:1.1.4-3+b3) ... Setting up libinput10:arm64 (1.12.6-2) ... Setting up libglx-mesa0:amd64 (18.3.4-2) ... Setting up libglx-mesa0:arm64 (18.3.4-2) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up libglx0:arm64 (1.1.0-1) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up libgl1:arm64 (1.1.0-1) ... Setting up libglu1-mesa:arm64 (9.0.0-2.1+b3) ... Setting up libqt5gui5:amd64 (5.11.3+dfsg1-1) ... Setting up libqt5gui5:arm64 (5.11.3+dfsg1-1) ... Setting up libglvnd-dev:arm64 (1.1.0-1) ... Setting up libqt5widgets5:amd64 (5.11.3+dfsg1-1) ... Setting up libqt5widgets5:arm64 (5.11.3+dfsg1-1) ... Setting up libqt5help5:amd64 (5.11.3-4) ... Setting up libqt5printsupport5:amd64 (5.11.3+dfsg1-1) ... Setting up libqt5printsupport5:arm64 (5.11.3+dfsg1-1) ... Setting up libgl1-mesa-dev:arm64 (18.3.4-2) ... Setting up libqt5quick5:amd64 (5.11.3-4) ... Setting up libqt5designer5:amd64 (5.11.3-4) ... Setting up libqt5webkit5:amd64 (5.212.0~alpha2-21) ... Setting up libqt5designercomponents5:amd64 (5.11.3-4) ... Setting up libqt5quickwidgets5:amd64 (5.11.3-4) ... Setting up libglu1-mesa-dev:arm64 (9.0.0-2.1+b3) ... Setting up qtbase5-dev:arm64 (5.11.3+dfsg1-1) ... Setting up qt5-assistant (5.11.3-4) ... Setting up qttools5-dev-tools (5.11.3-4) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up sbuild-build-depends-clustalx-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-4 gcc-8_8.3.0-4 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-4 libstdc++-8-dev-arm64-cross_8.3.0-4cross1 libstdc++6_8.3.0-4 libstdc++6-arm64-cross_8.3.0-4cross1 linux-libc-dev_4.19.28-2 Package versions: adduser_3.118 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-16 binutils-aarch64-linux-gnu_2.31.1-16 binutils-common_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-4 cpp-8-aarch64-linux-gnu_8.3.0-4cross1 cpp-aarch64-linux-gnu_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-arm64_12.6 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-2 dpkg_1.19.6 dpkg-cross_2.6.15-2 dpkg-dev_1.19.6 dwz_0.12-3 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.3.0-1 g++-8_8.3.0-4 g++-8-aarch64-linux-gnu_8.3.0-4cross1 g++-aarch64-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-4 gcc-8-aarch64-linux-gnu_8.3.0-4cross1 gcc-8-aarch64-linux-gnu-base_8.3.0-4cross1 gcc-8-base_8.3.0-4 gcc-8-cross-base_8.3.0-4cross1 gcc-aarch64-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 iso-codes_4.2-1 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0 libarchive-zip-perl_1.64-1 libasan5_8.3.0-4 libasan5-arm64-cross_8.3.0-4cross1 libatomic1_8.3.0-4 libatomic1-arm64-cross_8.3.0-4cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libavahi-client3_0.7-4+b1 libavahi-common-data_0.7-4+b1 libavahi-common3_0.7-4+b1 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbrotli1_1.0.7-2 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-arm64-cross_2.28-7cross1 libc6-dev_2.28-8 libc6-dev-arm64-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcap2-bin_1:2.25-2 libcc1-0_8.3.0-4 libclang1-7_1:7.0.1-8 libcom-err2_1.45.0-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libcups2_2.2.10-5 libdb5.3_5.3.28+dfsg1-0.6 libdbus-1-3_1.12.12-1 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-2 libdouble-conversion1_3.1.0-3 libdpkg-perl_1.19.6 libdrm-amdgpu1_2.4.97-1 libdrm-common_2.4.97-1 libdrm-dev_2.4.97-1 libdrm-etnaviv1_2.4.97-1 libdrm-freedreno1_2.4.97-1 libdrm-intel1_2.4.97-1 libdrm-nouveau2_2.4.97-1 libdrm-radeon1_2.4.97-1 libdrm-tegra0_2.4.97-1 libdrm2_2.4.97-1 libedit2_3.1-20181209-1 libegl-mesa0_18.3.4-2 libegl1_1.1.0-1 libelf1_0.176-1 libevdev2_1.6.0+dfsg-1 libexpat1_2.2.6-1 libext2fs2_1.45.0-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-2 libfreetype6_2.9.1-3 libgbm1_18.3.4-2 libgcc-8-dev_8.3.0-4 libgcc-8-dev-arm64-cross_8.3.0-4cross1 libgcc1_1:8.3.0-4 libgcc1-arm64-cross_1:8.3.0-4cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libgl1_1.1.0-1 libgl1-mesa-dev_18.3.4-2 libgl1-mesa-dri_18.3.4-2 libglapi-mesa_18.3.4-2 libgles1_1.1.0-1 libgles2_1.1.0-1 libglib2.0-0_2.58.3-1 libglu1-mesa_9.0.0-2.1+b3 libglu1-mesa-dev_9.0.0-2.1+b3 libglvnd-core-dev_1.1.0-1 libglvnd-dev_1.1.0-1 libglvnd0_1.1.0-1 libglx-mesa0_18.3.4-2 libglx0_1.1.0-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-2 libgomp1_8.3.0-4 libgomp1-arm64-cross_8.3.0-4cross1 libgpg-error0_1.35-1 libgraphite2-3_1.3.13-7 libgssapi-krb5-2_1.17-2 libgstreamer-plugins-base1.0-0_1.14.4-1 libgstreamer1.0-0_1.14.4-1 libgudev-1.0-0_232-2 libharfbuzz0b_2.3.1-1 libhogweed4_3.4.1-1 libhyphen0_2.8.8-7 libice6_2:1.0.9-2 libicu63_63.1-6 libidn2-0_2.0.5-1 libinput-bin_1.12.6-2 libinput10_1.12.6-2 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-4 libitm1-arm64-cross_8.3.0-4cross1 libjpeg62-turbo_1:1.5.2-2+b1 libk5crypto3_1.17-2 libkeyutils1_1.6-6 libkrb5-3_1.17-2 libkrb5support0_1.17-2 libllvm7_1:7.0.1-8 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-4 liblsan0-arm64-cross_8.3.0-4cross1 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-4 libmtdev1_1.1.5-1+b1 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libopengl0_1.1.0-1 liborc-0.4-0_1:0.4.28-3.1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre2-16-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpng16-16_1.6.36-5 libpthread-stubs0-dev_0.4-1 libqt5concurrent5_5.11.3+dfsg1-1 libqt5core5a_5.11.3+dfsg1-1 libqt5dbus5_5.11.3+dfsg1-1 libqt5designer5_5.11.3-4 libqt5designercomponents5_5.11.3-4 libqt5gui5_5.11.3+dfsg1-1 libqt5help5_5.11.3-4 libqt5network5_5.11.3+dfsg1-1 libqt5positioning5_5.11.3+dfsg-2 libqt5printsupport5_5.11.3+dfsg1-1 libqt5qml5_5.11.3-4 libqt5quick5_5.11.3-4 libqt5quickwidgets5_5.11.3-4 libqt5sensors5_5.11.3-2 libqt5sql5_5.11.3+dfsg1-1 libqt5sql5-sqlite_5.11.3+dfsg1-1 libqt5test5_5.11.3+dfsg1-1 libqt5webchannel5_5.11.3-2 libqt5webkit5_5.212.0~alpha2-21 libqt5widgets5_5.11.3+dfsg1-1 libqt5xml5_5.11.3+dfsg1-1 libquadmath0_8.3.0-4 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsensors-config_1:3.5.0-3 libsensors5_1:3.5.0-3 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-2 libss2_1.45.0-1 libssl1.1_1.1.1b-1 libstdc++-8-dev_8.3.0-4 libstdc++-8-dev-arm64-cross_8.3.0-4cross1 libstdc++6_8.3.0-4 libstdc++6-arm64-cross_8.3.0-4cross1 libsystemd0_241-2 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-4 libtsan0-arm64-cross_8.3.0-4cross1 libubsan1_8.3.0-4 libubsan1-arm64-cross_8.3.0-4cross1 libuchardet0_0.0.6-3 libudev1_241-2 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libvulkan-dev_1.1.101.0-2 libvulkan1_1.1.101.0-2 libwacom-common_0.32-1 libwacom2_0.32-1 libwayland-client0_1.16.0-1 libwayland-server0_1.16.0-1 libwebp6_0.6.1-2 libwoff1_1.0.2-1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libx11-dev_2:1.6.7-1 libx11-xcb-dev_2:1.6.7-1 libx11-xcb1_2:1.6.7-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-dri2-0_1.13.1-2 libxcb-dri2-0-dev_1.13.1-2 libxcb-dri3-0_1.13.1-2 libxcb-dri3-dev_1.13.1-2 libxcb-glx0_1.13.1-2 libxcb-glx0-dev_1.13.1-2 libxcb-icccm4_0.4.1-1.1 libxcb-image0_0.4.0-1+b2 libxcb-keysyms1_0.4.0-1+b2 libxcb-present-dev_1.13.1-2 libxcb-present0_1.13.1-2 libxcb-randr0_1.13.1-2 libxcb-randr0-dev_1.13.1-2 libxcb-render-util0_0.3.9-1+b1 libxcb-render0_1.13.1-2 libxcb-render0-dev_1.13.1-2 libxcb-shape0_1.13.1-2 libxcb-shape0-dev_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb-sync-dev_1.13.1-2 libxcb-sync1_1.13.1-2 libxcb-util0_0.3.8-3+b2 libxcb-xfixes0_1.13.1-2 libxcb-xfixes0-dev_1.13.1-2 libxcb-xinerama0_1.13.1-2 libxcb-xkb1_1.13.1-2 libxcb1_1.13.1-2 libxcb1-dev_1.13.1-2 libxdamage-dev_1:1.1.4-3+b3 libxdamage1_1:1.1.4-3+b3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxi6_2:1.7.9-1 libxkbcommon-x11-0_0.8.2-1 libxkbcommon0_0.8.2-1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libxrender1_1:0.9.10-1 libxshmfence-dev_1.3-1 libxshmfence1_1.3-1 libxslt1.1_1.1.32-2 libxxf86vm-dev_1:1.1.4-1+b2 libxxf86vm1_1:1.1.4-1+b2 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.28-2 linux-libc-dev-arm64-cross_4.19.20-1cross1 login_1:4.5-1.1 lsb-base_10.2019031300 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mesa-common-dev_18.3.4-2 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 qdoc-qt5_5.11.3-4 qt5-assistant_5.11.3-4 qt5-qmake_5.11.3+dfsg1-1 qt5-qmake-bin_5.11.3+dfsg1-1 qtbase5-dev_5.11.3+dfsg1-1 qtbase5-dev-tools_5.11.3+dfsg1-1 qtchooser_66-1 qttools5-dev-tools_5.11.3-4 sbuild-build-depends-clustalx-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xkb-data_2.26-2 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Feb 24 19:18:02 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalx_2.1+lgpl-8.dsc dpkg-source: info: extracting clustalx in /<>/clustalx-2.1+lgpl dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying qt5.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-6b27e2be-1447-4223-80aa-d572b80a48d8 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clustalx dpkg-buildpackage: info: source version 2.1+lgpl-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>/clustalx-2.1+lgpl' rm -f moc_* dh_clean make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/clustalx-2.1+lgpl' dh_auto_configure aarch64-linux-gnu-qmake -makefile -spec linux-g\+\+ "QMAKE_CFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/clustalx-2.1+lgpl/.qmake.stash # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-z,relro -Wl,-z,now:" Makefile make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' dh_auto_build -a make -j1 make[1]: Entering directory '/<>/clustalx-2.1+lgpl' aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentParameters.o AlignmentParameters.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from AlignmentParameters.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ AlignmentParameters.cpp: In member function 'virtual void AlignmentParameters::showEvent(QShowEvent*)': AlignmentParameters.cpp:48:49: warning: unused parameter 'event' [-Wunused-parameter] void AlignmentParameters::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ AlignmentViewerWidget.cpp: In member function 'int AlignmentViewerWidget::makeGapPenaltyData()': AlignmentViewerWidget.cpp:588:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(i = 0; i < len && i < gapMask->size(); i++) ~~^~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function 'int AlignmentViewerWidget::makeSecStructData()': AlignmentViewerWidget.cpp:645:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (i = 0; i < len && i < _secStructMask->size();i++) ~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp:652:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(i = 0; i < len && i < ssMask.size(); i++) ~~^~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function 'virtual void AlignmentViewerWidget::resizeEvent(QResizeEvent*)': AlignmentViewerWidget.cpp:781:58: warning: unused parameter 'event' [-Wunused-parameter] void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event ) ~~~~~~~~~~~~~~~^~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentWidget.o AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from AlignmentWidget.cpp:49: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from AlignmentWidget.cpp:49: AlignmentWidget.h: In constructor 'AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)': AlignmentWidget.h:170:10: warning: 'AlignmentWidget::blackAndWhite' will be initialized after [-Wreorder] bool blackAndWhite; ^~~~~~~~~~~~~ AlignmentWidget.h:161:27: warning: 'std::vector >* AlignmentWidget::selectedColoredRes' [-Wreorder] std::vector* selectedColoredRes; ^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent) ^~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::calculatePixMaps()': AlignmentWidget.cpp:225:35: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for(unsigned int j = 0; j < lengthLongestSeq; j++) ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:235:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] if(code >= 0 && code < conservationPixmaps->size()) ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:268:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size()) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:280:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size()) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:291:86: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j) ~~~~~~~~~~~~~~~~~~~~~^~~ AlignmentWidget.cpp:215:9: warning: unused variable 'codeForSpace' [-Wunused-variable] int codeForSpace = clustalw::userParameters->resIndex( ^~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::generateSecStructurePixmaps()': AlignmentWidget.cpp:333:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] if(i < secStructPixmaps->size() && i < secStructInfo.size()) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::drawContents(QPainter*, int, int, int, int)': AlignmentWidget.cpp:569:36: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] if(selectedRes >= selectedColoredRes->size()) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::calcConserveInfo()': AlignmentWidget.cpp:689:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(int j = 1; j <= strongGroup.size(); j++) ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:693:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(int j = 1; j <= weakGroup.size(); j++) ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:700:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] if((i + _fRes - 1 < (*alignment)[j].size()) && ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:701:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] (i + _fRes - 1 < (*alignment)[_fSeq].size())) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:725:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(int k = 1; k <= strongGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:737:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(int k = 1; k <= weakGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:760:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(int k = 1; k <= strongGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:771:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(int k = 1; k <= weakGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)': AlignmentWidget.cpp:878:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'QString AlignmentWidget::initConsensus()': AlignmentWidget.cpp:927:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::generatePixMaps()': AlignmentWidget.cpp:1039:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(int j = 0; j < aminoAcid.size(); j++) ~~^~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignOutputFileNames.o AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from AlignOutputFileNames.cpp:26: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from AlignOutputFileNames.cpp:26: AlignOutputFileNames.h:106:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr outFileNames; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignOutputFileNames.cpp:23: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from BootstrapTreeDialog.cpp:18: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from BootstrapTreeDialog.cpp:18: BootstrapTreeDialog.h:70:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from BootstrapTreeDialog.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ColorFileXmlParser.o ColorFileXmlParser.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] // tr("colorrules not found in the parameter file, using\ ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from ColorFileXmlParser.cpp:3: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ ColorFileXmlParser.cpp: In member function 'int ColorFileXmlParser::parseRGBIndex(const QDomElement&, QTreeWidgetItem*)': ColorFileXmlParser.cpp:85:46: warning: unused parameter 'parentItem' [-Wunused-parameter] QTreeWidgetItem *parentItem) ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function 'void ColorFileXmlParser::parseConsensus(const QDomElement&, QTreeWidgetItem*)': ColorFileXmlParser.cpp:138:86: warning: unused parameter 'parentItem' [-Wunused-parameter] void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem) ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function 'int ColorFileXmlParser::parseColorRule(const QDomElement&, QTreeWidgetItem*)': ColorFileXmlParser.cpp:175:85: warning: unused parameter 'parentItem' [-Wunused-parameter] int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem) ~~~~~~~~~~~~~~~~~^~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ColorParameters.o ColorParameters.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorParameters.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ ColorParameters.cpp: In member function 'QColor ColorParameters::getResidueColor(QChar, QChar)': ColorParameters.cpp:160:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(i = 0; i < colorPar.size(); i++) ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:174:26: warning: unused variable 'temp' [-Wunused-variable] char temp = colorPar[i].consensusConditionList[j].toLatin1(); ^~~~ ColorParameters.cpp:157:10: warning: unused variable 'showRes' [-Wunused-variable] char showRes = res.toLatin1(); ^~~~~~~ ColorParameters.cpp:158:10: warning: unused variable 'showCon' [-Wunused-variable] char showCon = consensus.toLatin1(); ^~~~~~~ ColorParameters.cpp: In member function 'int ColorParameters::getResidueColorNum(QChar, QChar)': ColorParameters.cpp:197:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(i = 0; i < colorPar.size(); i++) ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:211:26: warning: unused variable 'temp' [-Wunused-variable] char temp = colorPar[i].consensusConditionList[j].toLatin1(); ^~~~ ColorParameters.cpp:194:10: warning: unused variable 'showRes' [-Wunused-variable] char showRes = res.toLatin1(); ^~~~~~~ ColorParameters.cpp:195:10: warning: unused variable 'showCon' [-Wunused-variable] char showCon = consensus.toLatin1(); ^~~~~~~ ColorParameters.cpp: In member function 'void ColorParameters::printColorInfo()': ColorParameters.cpp:229:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(int i = 0; i < colors.size(); i++) ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function 'int ColorParameters::getIndexOfColor(QColor)': ColorParameters.cpp:238:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(int i = 0; i < colors.size(); i++) ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function 'QColor ColorParameters::getColorFromNum(int)': ColorParameters.cpp:251:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] if(colorNum > 0 && colorNum - 1 < colorPar.size()) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ColumnScoreParams.o ColumnScoreParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from ColumnScoreParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ ColumnScoreParams.cpp: In member function 'virtual void ColumnScoreParams::showEvent(QShowEvent*)': ColumnScoreParams.cpp:51:47: warning: unused parameter 'event' [-Wunused-parameter] void ColumnScoreParams::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o FileDialog.o FileDialog.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o HardCodedColorScheme.o HardCodedColorScheme.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from HardCodedColorScheme.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o HelpDisplayWidget.o HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from HelpDisplayWidget.cpp:15: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ HelpDisplayWidget.cpp: In member function 'std::__cxx11::string* HelpDisplayWidget::loadHelpInformation(char)': HelpDisplayWidget.cpp:147:29: warning: catching polymorphic type 'class std::ios_base::failure' by value [-Wcatch-value=] catch(ifstream::failure e) ^ HelpDisplayWidget.cpp:61:13: warning: variable 'number' set but not used [-Wunused-but-set-variable] int i, number, nlines; ^~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o HistogramWidget.o HistogramWidget.cpp HistogramWidget.cpp: In member function 'void HistogramWidget::drawContents(QPainter*, int, int, int, int)': HistogramWidget.cpp:180:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] if(column >= 0 && column < arrayOfHeights->size()) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:198:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] if(column >= 0 && column < arrayOfHeights->size()) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o KeyController.o KeyController.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoringSegParams.o LowScoringSegParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from LowScoringSegParams.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ LowScoringSegParams.cpp: In member function 'virtual void LowScoringSegParams::showEvent(QShowEvent*)': LowScoringSegParams.cpp:51:49: warning: unused parameter 'event' [-Wunused-parameter] void LowScoringSegParams::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o main.o main.cpp In file included from main.cpp:21: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from main.cpp:24: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o mainwindow.o mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:99: WritePostscriptFile.h:88:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr params; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:100: AlignOutputFileNames.h:106:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr outFileNames; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:101: TreeOutputFileNames.h:73:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:102: BootstrapTreeDialog.h:70:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ mainwindow.cpp: In member function 'virtual void MainWindow::showEvent(QShowEvent*)': mainwindow.cpp:198:40: warning: unused parameter 'event' [-Wunused-parameter] void MainWindow::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ mainwindow.cpp: In member function 'void MainWindow::writeViewer1AsPostscript(int)': mainwindow.cpp:1454:47: warning: unused parameter 'type' [-Wunused-parameter] void MainWindow::writeViewer1AsPostscript(int type) ~~~~^~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o PairwiseParams.o PairwiseParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from PairwiseParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ PairwiseParams.cpp: In member function 'virtual void PairwiseParams::showEvent(QShowEvent*)': PairwiseParams.cpp:74:44: warning: unused parameter 'event' [-Wunused-parameter] void PairwiseParams::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o PostscriptFileParams.o PostscriptFileParams.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from PostscriptFileParams.h:4, from PostscriptFileParams.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ProteinGapParameters.o ProteinGapParameters.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o PSPrinter.o PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from PSPrinter.cpp:20: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ PSPrinter.cpp: In member function 'void PSPrinter::writePSFile(PostscriptFileParams*)': PSPrinter.cpp:207:55: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if(res.isLetter() && resNumber.size() > i - data->firstSeq) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:307:67: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if(res.isLetter() && resNumber.size() > seq) ~~~~~~~~~~~~~~~~~^~~~~ PSPrinter.cpp:421:67: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if(res.isLetter() && resNumber.size() > i) ~~~~~~~~~~~~~~~~~^~~ PSPrinter.cpp:55:9: warning: unused variable 'err' [-Wunused-variable] int err; ^~~ PSPrinter.cpp:73:9: warning: unused variable 'gapPos1' [-Wunused-variable] int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local ^~~~~~~ PSPrinter.cpp:74:9: warning: unused variable 'gapPos2' [-Wunused-variable] int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local ^~~~~~~ PSPrinter.cpp: In member function 'void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)': PSPrinter.cpp:587:32: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if(data->nameHeader.size() > ix) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ PSPrinter.cpp: In member function 'void PSPrinter::printFooterLine(std::ofstream*, int, int)': PSPrinter.cpp:730:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(i = fr; i <= lr && i < ruler.length(); i++) ~~^~~~~~~~~~~~~~~~ PSPrinter.cpp: In member function 'void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)': PSPrinter.cpp:789:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] for(i = fr + 1; i <= lr && i < data->histogram->size(); i++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:781:14: warning: unused variable 'psY' [-Wunused-variable] int psX, psY, curveBottom; ^~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o QTUtility.o QTUtility.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Resources.o Resources.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o SaveSeqFile.o SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o SearchForString.o SearchForString.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o SecStructOptions.o SecStructOptions.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o SeqNameWidget.o SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from SeqNameWidget.cpp:59: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ SeqNameWidget.cpp: In member function 'virtual void SeqNameWidget::paintEvent(QPaintEvent*)': SeqNameWidget.cpp:375:11: warning: variable 'redrawRect' set but not used [-Wunused-but-set-variable] QRect redrawRect = event->rect(); ^~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o TreeFormatOptions.o TreeFormatOptions.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o TreeOutputFileNames.o TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from TreeOutputFileNames.cpp:17: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from TreeOutputFileNames.cpp:17: TreeOutputFileNames.h:73:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from TreeOutputFileNames.cpp:14: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o WritePostscriptFile.o WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from WritePostscriptFile.cpp:24: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from WritePostscriptFile.cpp:24: WritePostscriptFile.h:88:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr params; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from /usr/aarch64-linux-gnu/include/c++/8/thread:39, from /usr/aarch64-linux-gnu/include/c++/8/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:223, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Clustal.o clustalW/Clustal.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:38:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:57:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:102:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:108:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:133:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:138:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:142:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/Clustal.cpp: In member function 'void clustalw::Clustal::align(std::__cxx11::string*, bool)': clustalW/Clustal.cpp:162:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/Clustal.cpp: In member function 'void clustalw::Clustal::doAlignUseOldTree(std::__cxx11::string*)': clustalW/Clustal.cpp:837:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Help.o clustalW/Help.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Alignment.o clustalW/alignment/Alignment.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/Alignment.cpp:25: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/Alignment.cpp: In member function 'bool clustalw::Alignment::keepPortionOfSeqArray(int, int)': clustalW/alignment/Alignment.cpp:1715:24: warning: variable 'posToAddTo' set but not used [-Wunused-but-set-variable] SeqArray::iterator posToAddTo = sectionToRealign.begin(); ^~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/AlignmentOutput.h:24, from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:512:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool AlignmentOutput::openExplicitFile(auto_ptr& outFile, string fileName) ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:535:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string AlignmentOutput::openOutputFile(auto_ptr& outFile, string prompt, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::fastaOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:673:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::gcgOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:868:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::phylipOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:1027:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::nexusOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:1156:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::gdeOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:1445:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::nbrfOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:1560:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::clustalOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:2095:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp:2102:21: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] catch(exception e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::findRangeValues(clustalw::Alignment*, clustalw::rangeNum*, int, int, int)': clustalW/alignment/AlignmentOutput.cpp:2351:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/ObjectiveScore.h:15, from clustalW/alignment/ObjectiveScore.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Sequence.o clustalW/alignment/Sequence.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o FileParser.o clustalW/fileInput/FileParser.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o FileReader.o clustalW/fileInput/FileReader.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function 'int clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::__cxx11::string*)': clustalW/fileInput/FileReader.cpp:155:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fileParser; // Means we dont need to delete it! ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/fileInput/FileReader.cpp: At global scope: clustalW/fileInput/FileReader.cpp:426:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void FileReader::checkInfile(int *nseqs, auto_ptr& fileParser) ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function 'void clustalw::FileReader::checkInfile(int*, std::auto_ptr&)': clustalW/fileInput/FileReader.cpp:555:21: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] catch(exception ex) ^~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o InFileStream.o clustalW/fileInput/InFileStream.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp clustalW/fileInput/MSFFileParser.cpp: In member function 'virtual std::vector clustalw::MSFFileParser::getSeqRange(int, int, std::__cxx11::string*)': clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter 'offendingSeq' [-Wunused-parameter] vector MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq) ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp: In member function 'virtual void clustalw::MSFFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)': clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter 'secStructMask' [-Wunused-parameter] void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter 'secStructName' [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter 'length' [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ~~~~^~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/PearsonFileParser.cpp: In member function 'virtual clustalw::Sequence clustalw::PearsonFileParser::getSeq(int, std::__cxx11::string*)': clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter 'offendingSeq' [-Wunused-parameter] Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq) ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp: In member function 'virtual void clustalw::PearsonFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)': clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] void PearsonFileParser::getSecStructure(vector& gapPenaltyMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter 'secStructMask' [-Wunused-parameter] vector& secStructMask, string& secStructName, ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter 'secStructName' [-Wunused-parameter] vector& secStructMask, string& secStructName, ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter 'length' [-Wunused-parameter] int &structPenalties, int length) ~~~~^~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp clustalW/fileInput/PIRFileParser.cpp: In member function 'virtual void clustalw::PIRFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)': clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter 'secStructMask' [-Wunused-parameter] void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter 'secStructName' [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter 'length' [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ~~~~^~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/RSFFileParser.cpp: In member function 'virtual void clustalw::RSFFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)': clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] void RSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/general/ClustalWResources.cpp: In member function 'std::__cxx11::string clustalw::ClustalWResources::findFile(std::__cxx11::string, clustalw::ClustalWResourcePathType) const': clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript 1 is above array bounds of 'char [1]' [-Warray-bounds] delim[1] = 0; ~~~~~~~^ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o DebugLog.o clustalW/general/DebugLog.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o OutputFile.o clustalW/general/OutputFile.cpp In file included from clustalW/general/OutputFile.cpp:9: clustalW/general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/general/OutputFile.h:8, from clustalW/general/OutputFile.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Stats.o clustalW/general/Stats.cpp In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/general/../alignment/Alignment.h:42, from clustalW/general/Stats.cpp:15: clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o SymMatrix.o clustalW/general/SymMatrix.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o UserParameters.o clustalW/general/UserParameters.cpp clustalW/general/UserParameters.cpp: In constructor 'clustalw::UserParameters::UserParameters(bool)': clustalW/general/UserParameters.cpp:33:37: warning: unused parameter 'log' [-Wunused-parameter] UserParameters::UserParameters(bool log) ~~~~~^~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Utility.o clustalW/general/Utility.cpp clustalW/general/Utility.cpp: In member function 'bool clustalw::Utility::lineType(char*, const char*)': clustalW/general/Utility.cpp:251:8: warning: variable 'n' set but not used [-Wunused-but-set-variable] int n; ^ clustalW/general/Utility.cpp: In member function 'virtual void clustalw::Utility::setInfoLabelPtr(QLabel*)': clustalW/general/Utility.cpp:519:39: warning: unused parameter 'ptrToLabelObj' [-Wunused-parameter] void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj) ~~~~~~~~^~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function 'double clustalw::Utility::getReal(const char*, double, double, double)': clustalW/general/Utility.cpp:183:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function 'int clustalw::Utility::getInt(const char*, int, int, int)': clustalW/general/Utility.cpp:221:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In constructor 'clustalw::InteractiveMenu::InteractiveMenu()': clustalW/interface/InteractiveMenu.cpp:41:11: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=] catch(bad_alloc) ^~~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In member function 'int clustalw::InteractiveMenu::secStrOutputOptions()': clustalW/interface/InteractiveMenu.cpp:520:36: warning: this statement may fall through [-Wimplicit-fallthrough=] clustalObj->getHelp('C'); ~~~~~~~~~~~~~~~~~~~^~~~~ clustalW/interface/InteractiveMenu.cpp:521:13: note: here case 'Q': ^~~~ clustalW/interface/InteractiveMenu.cpp: In member function 'void clustalw::InteractiveMenu::doSystem()': clustalW/interface/InteractiveMenu.cpp:1190:15: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system(lin1.c_str()); ~~~~~~^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Iteration.o clustalW/multipleAlign/Iteration.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:38:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:57:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:102:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:108:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:133:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:138:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:142:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/multipleAlign/Iteration.cpp: In member function 'bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count; ^~~~~ clustalW/multipleAlign/Iteration.cpp:231:24: warning: ignoring return value of 'char* tmpnam(char*)', declared with attribute warn_unused_result [-Wunused-result] tmpnam (buffer); ~~~~~~~^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/LowScoreSegProfile.h:13, from clustalW/multipleAlign/LowScoreSegProfile.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o MSA.o clustalW/multipleAlign/MSA.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/MSA.h:10, from clustalW/multipleAlign/MSA.cpp:16: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function 'int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)': clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable 'alignmentScore' [-Wunused-variable] int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18 ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function 'int clustalw::MSA::seqsAlignToProfile(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, int, std::__cxx11::string)': clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter 'phylipName' [-Wunused-parameter] string phylipName) ~~~~~~~^~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/ProfileBase.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/ProfileBase.cpp: In member function 'void clustalw::ProfileBase::calcResidueSpecificPen(clustalw::SeqArray*, std::vector*)': clustalW/multipleAlign/ProfileBase.cpp:372:25: warning: comparison is always false due to limited range of data type [-Wtype-limits] if ((ix < 0) || (ix > _maxAA)) ~~~^~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileStandard.h:9, from clustalW/multipleAlign/ProfileStandard.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileWithSub.h:9, from clustalW/multipleAlign/ProfileWithSub.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FastPairwiseAlign.h:9, from clustalW/pairwise/FastPairwiseAlign.cpp:10: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FullPairwiseAlign.h:9, from clustalW/pairwise/FullPairwiseAlign.cpp:9: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::tempInterface(int, int)': clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter 'alignResidueType' [-Wunused-parameter] void SubMatrix::tempInterface(int alignResidueType, int alignType) ~~~~^~~~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter 'alignType' [-Wunused-parameter] void SubMatrix::tempInterface(int alignResidueType, int alignType) ~~~~^~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])': clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable 'maxRes' set but not used [-Wunused-but-set-variable] int maxRes; ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])': clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable 'maxRes' set but not used [-Wunused-but-set-variable] int maxRes; ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)': clustalW/substitutionMatrix/SubMatrix.cpp:1103:19: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized] return (maxRes); ^ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTree.o clustalW/tree/ClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/ClusterTree.cpp: In member function 'void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)': clustalW/tree/ClusterTree.cpp:580:9: warning: variable 'rs' set but not used [-Wunused-but-set-variable] int rs = 0, rl = 0; ^~ clustalW/tree/ClusterTree.cpp:580:17: warning: variable 'rl' set but not used [-Wunused-but-set-variable] int rs = 0, rl = 0; ^~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o NJTree.o clustalW/tree/NJTree.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Tree.o clustalW/tree/Tree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/Tree.cpp:10: clustalW/tree/Tree.h:26:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr createSets(int firstSeq, int lastSeq); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/Tree.cpp:278:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr Tree::createSets(int firstSeq, int lastSeq) ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/Tree.cpp: In member function 'std::auto_ptr clustalw::Tree::createSets(int, int)': clustalW/tree/Tree.cpp:280:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progAlignSteps; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o TreeInterface.o clustalW/tree/TreeInterface.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/TreeInterface.h:19, from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:38:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:57:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:102:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:108:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:133:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:138:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:142:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/../general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/ClusterTree.h:70:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:18: clustalW/tree/Tree.h:26:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr createSets(int firstSeq, int lastSeq); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:23: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp:31:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp:103:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp:195:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatNJ(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string*, bool*)': clustalW/tree/TreeInterface.cpp:200:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:208:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsUseOldGuideTreeNJ(clustalw::DistMatrix*, clustalw::Alignment*, std::__cxx11::string*, std::vector*, int, int, bool*)': clustalW/tree/TreeInterface.cpp:214:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:439:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromTreeNJ(clustalw::Alignment*, clustalw::DistMatrix*, std::__cxx11::string*, std::vector*, int, int, bool*)': clustalW/tree/TreeInterface.cpp:445:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:485:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatUPGMA(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string*, bool*)': clustalW/tree/TreeInterface.cpp:490:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:503:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr TreeInterface::generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, DistMatrix* distMat, Alignment *alignPtr, int seq1, int nSeqs, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::generateTreeFromDistMatUPGMA(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string*, bool*)': clustalW/tree/TreeInterface.cpp:506:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Node.o clustalW/tree/UPGMA/Node.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../ClusterTree.h:23, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../ClusterTree.h:70:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr generateTree(RootedGuideTree* phyTree, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp:17:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr RootedClusterTree::treeFromDistMatrix(RootedGuideTree* phyloTree,DistMatrix* distMat, Alignment *alignPtr, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp: In member function 'std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string&)': clustalW/tree/UPGMA/RootedClusterTree.cpp:21:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedGuideTree.cpp:10: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr generateTree(RootedGuideTree* phyTree, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:27:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr UPGMAAlgorithm::generateTree(RootedGuideTree* phyTree, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -dM -E -o moc_predefs.h /usr/lib/aarch64-linux-gnu/qt5/mkspecs/features/data/dummy.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include AlignmentParameters.h -o moc_AlignmentParameters.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from moc_AlignmentViewerWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include AlignmentWidget.h -o moc_AlignmentWidget.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from moc_AlignmentWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from moc_AlignOutputFileNames.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_AlignOutputFileNames.cpp:9: AlignOutputFileNames.h:106:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr outFileNames; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from AlignOutputFileNames.h:9, from moc_AlignOutputFileNames.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from moc_BootstrapTreeDialog.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_BootstrapTreeDialog.cpp:9: BootstrapTreeDialog.h:70:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from BootstrapTreeDialog.h:10, from moc_BootstrapTreeDialog.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from moc_ColorFileXmlParser.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include ColumnScoreParams.h -o moc_ColumnScoreParams.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include FileDialog.h -o moc_FileDialog.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_FileDialog.o moc_FileDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from moc_HelpDisplayWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include HistogramWidget.h -o moc_HistogramWidget.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HistogramWidget.o moc_HistogramWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include LowScoringSegParams.h -o moc_LowScoringSegParams.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include mainwindow.h -o moc_mainwindow.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_mainwindow.o moc_mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/8/locale:43, from /usr/aarch64-linux-gnu/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include PairwiseParams.h -o moc_PairwiseParams.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PairwiseParams.o moc_PairwiseParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include ProteinGapParameters.h -o moc_ProteinGapParameters.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include PSPrinter.h -o moc_PSPrinter.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PSPrinter.o moc_PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from moc_PSPrinter.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include SaveSeqFile.h -o moc_SaveSeqFile.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from moc_SaveSeqFile.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include SearchForString.h -o moc_SearchForString.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SearchForString.o moc_SearchForString.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include SecStructOptions.h -o moc_SecStructOptions.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SecStructOptions.o moc_SecStructOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include SeqNameWidget.h -o moc_SeqNameWidget.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from moc_SeqNameWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include TreeFormatOptions.h -o moc_TreeFormatOptions.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from moc_TreeOutputFileNames.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_TreeOutputFileNames.cpp:9: TreeOutputFileNames.h:73:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from TreeOutputFileNames.h:9, from moc_TreeOutputFileNames.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/8 -I/usr/aarch64-linux-gnu/include/c++/8/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/8/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/8/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include WritePostscriptFile.h -o moc_WritePostscriptFile.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from moc_WritePostscriptFile.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_WritePostscriptFile.cpp:9: WritePostscriptFile.h:88:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr params; ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/8/memory:80, from WritePostscriptFile.h:9, from moc_WritePostscriptFile.cpp:9: /usr/aarch64-linux-gnu/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ aarch64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o -lQt5Widgets -lQt5Gui -lQt5Xml -lQt5Core -lGL -lpthread /usr/lib/gcc-cross/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/bin/ld: Iteration.o: in function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./clustalW/multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/clustalx-2.1+lgpl' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' dh_installman -a dh_installmime -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/clustalx/usr/bin/clustalx was not linked against libGL.so.1 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'clustalx' in '../clustalx_2.1+lgpl-8_arm64.deb'. dpkg-deb: building package 'clustalx-dbgsym' in '../clustalx-dbgsym_2.1+lgpl-8_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../clustalx_2.1+lgpl-8_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-04-01T03:44:32Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-Q88HIb/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-clustalx-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-Q88HIb/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Q88HIb/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Q88HIb/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Q88HIb/apt_archive ./ Sources [774 B] Get:5 copy:/<>/resolver-Q88HIb/apt_archive ./ Packages [849 B] Fetched 2586 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 5604 kB of archives. After this operation, 15.3 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Q88HIb/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-1 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-1 [867 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.11.0 [1187 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5604 kB in 0s (30.7 MB/s) Selecting previously unselected package netbase. (Reading database ... 25254 files and directories currently installed.) Preparing to unpack .../00-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.13-1_amd64.deb ... Unpacking gpgconf (2.2.13-1) ... Selecting previously unselected package gpg. 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Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../18-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../19-libnet-ssleay-perl_1.85-2+b1_amd64.deb ... Unpacking libnet-ssleay-perl (1.85-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../20-libio-socket-ssl-perl_2.060-3_all.deb ... Unpacking libio-socket-ssl-perl (2.060-3) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../21-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../22-libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../23-libnet-ip-perl_1.26-2_all.deb ... 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Setting up libstruct-dumb-perl (0.09-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libfuture-perl (0.39-1) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up libio-async-perl (0.72-1) ... Setting up patchutils (0.3.4-2) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up diffstat (1.62-1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up netbase (5.6) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (7.0-5) ... Setting up liburi-perl (1.76-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libnet-dns-perl (1.19-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.13-1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up gpg (2.2.13-1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up libemail-valid-perl (1.202-1) ... Setting up lintian (2.11.0) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-8) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalx_2.1+lgpl-8_arm64.changes: ---------------------------------- Format: 1.8 Date: Sun, 24 Feb 2019 20:04:40 +0100 Source: clustalx Binary: clustalx clustalx-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.1+lgpl-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Closes: 923120 Changes: clustalx (2.1+lgpl-8) unstable; urgency=medium . [ Jelmer Vernooij ] * Trim trailing whitespace. . [ Helmut Grohne ] * Fix FTCBFS: Let dh_auto_configure pass cross flags to qmake. Closes: #923120 . [ Andreas Tille ] * Standards-Version: 4.3.0 Checksums-Sha1: 8e95cd44af12e6e0a34b7c5b412f02f970ce0414 12777928 clustalx-dbgsym_2.1+lgpl-8_arm64.deb 7f993cfd0fbf445d641492eeca1dc7026bf7cce4 9822 clustalx_2.1+lgpl-8_arm64.buildinfo 05126e895557b6fe31c84004621b2e6207232310 391048 clustalx_2.1+lgpl-8_arm64.deb Checksums-Sha256: ff6230bbf505fcc96cba95a39fd3717a3b7f3c501fad4a5b132cb7e966046328 12777928 clustalx-dbgsym_2.1+lgpl-8_arm64.deb 39aceb71ffc96155ab0c27d0220b06481457eefc43c17eacf628886c5012f99e 9822 clustalx_2.1+lgpl-8_arm64.buildinfo b4d31cad8336bd0362bc6a0221247232259ea8b0885daee816e263a418b96bd6 391048 clustalx_2.1+lgpl-8_arm64.deb Files: 2b55ce3f98d98e4cdd8c79e6d7ebe27d 12777928 debug optional clustalx-dbgsym_2.1+lgpl-8_arm64.deb 68366e0cbe8636e9cded555cddac70b1 9822 science optional clustalx_2.1+lgpl-8_arm64.buildinfo 671944329d1c299897e2c447cbd4e90f 391048 science optional clustalx_2.1+lgpl-8_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: clustalx Binary: clustalx Architecture: arm64 Version: 2.1+lgpl-8 Checksums-Md5: 2b55ce3f98d98e4cdd8c79e6d7ebe27d 12777928 clustalx-dbgsym_2.1+lgpl-8_arm64.deb 671944329d1c299897e2c447cbd4e90f 391048 clustalx_2.1+lgpl-8_arm64.deb Checksums-Sha1: 8e95cd44af12e6e0a34b7c5b412f02f970ce0414 12777928 clustalx-dbgsym_2.1+lgpl-8_arm64.deb 05126e895557b6fe31c84004621b2e6207232310 391048 clustalx_2.1+lgpl-8_arm64.deb Checksums-Sha256: ff6230bbf505fcc96cba95a39fd3717a3b7f3c501fad4a5b132cb7e966046328 12777928 clustalx-dbgsym_2.1+lgpl-8_arm64.deb b4d31cad8336bd0362bc6a0221247232259ea8b0885daee816e263a418b96bd6 391048 clustalx_2.1+lgpl-8_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 01 Apr 2019 03:44:31 +0000 Build-Path: /<>/clustalx-2.1+lgpl Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.1), base-passwd (= 3.5.46), bash (= 5.0-2), binutils (= 2.31.1-16), binutils-common (= 2.31.1-16), binutils-x86-64-linux-gnu (= 2.31.1-16), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-4), dash (= 0.5.10.2-5), debconf (= 1.5.71), debhelper (= 12.1.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.2-1), diffutils (= 1:3.7-2), dpkg (= 1.19.6), dpkg-dev (= 1.19.6), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), fontconfig (= 2.13.1-2), fontconfig-config (= 2.13.1-2), fonts-dejavu-core (= 2.37-1), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-4), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-4), gcc-8-base (= 8.3.0-4), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 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5.11.3-2), libqt5webkit5 (= 5.212.0~alpha2-21), libqt5widgets5 (= 5.11.3+dfsg1-1), libqt5xml5 (= 5.11.3+dfsg1-1), libquadmath0 (= 8.3.0-4), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsensors-config (= 1:3.5.0-3), libsensors5 (= 1:3.5.0-3), libsigsegv2 (= 2.12-2), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.33.1-0.1), libsqlite3-0 (= 3.27.2-2), libssl1.1 (= 1.1.1b-1), libstdc++-8-dev (= 8.3.0-4), libstdc++6 (= 8.3.0-4), libsystemd0 (= 241-2), libtasn1-6 (= 4.13-3), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-4), libubsan1 (= 8.3.0-4), libuchardet0 (= 0.0.6-3), libudev1 (= 241-2), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libvulkan-dev (= 1.1.101.0-2), libvulkan1 (= 1.1.101.0-2), libwacom-common (= 0.32-1), libwacom2 (= 0.32-1), libwayland-client0 (= 1.16.0-1), libwayland-server0 (= 1.16.0-1), libwebp6 (= 0.6.1-2), libwoff1 (= 1.0.2-1), libx11-6 (= 2:1.6.7-1), libx11-data (= 2:1.6.7-1), libx11-dev (= 2:1.6.7-1), libx11-xcb-dev (= 2:1.6.7-1), libx11-xcb1 (= 2:1.6.7-1), libxau-dev (= 1:1.0.8-1+b2), libxau6 (= 1:1.0.8-1+b2), libxcb-dri2-0 (= 1.13.1-2), libxcb-dri2-0-dev (= 1.13.1-2), libxcb-dri3-0 (= 1.13.1-2), libxcb-dri3-dev (= 1.13.1-2), libxcb-glx0 (= 1.13.1-2), libxcb-glx0-dev (= 1.13.1-2), libxcb-icccm4 (= 0.4.1-1.1), libxcb-image0 (= 0.4.0-1+b2), libxcb-keysyms1 (= 0.4.0-1+b2), libxcb-present-dev (= 1.13.1-2), libxcb-present0 (= 1.13.1-2), libxcb-randr0 (= 1.13.1-2), libxcb-randr0-dev (= 1.13.1-2), libxcb-render-util0 (= 0.3.9-1+b1), libxcb-render0 (= 1.13.1-2), libxcb-render0-dev (= 1.13.1-2), libxcb-shape0 (= 1.13.1-2), libxcb-shape0-dev (= 1.13.1-2), libxcb-shm0 (= 1.13.1-2), libxcb-sync-dev (= 1.13.1-2), libxcb-sync1 (= 1.13.1-2), libxcb-util0 (= 0.3.8-3+b2), libxcb-xfixes0 (= 1.13.1-2), libxcb-xfixes0-dev (= 1.13.1-2), libxcb-xinerama0 (= 1.13.1-2), libxcb-xkb1 (= 1.13.1-2), libxcb1 (= 1.13.1-2), libxcb1-dev (= 1.13.1-2), libxdamage-dev (= 1:1.1.4-3+b3), libxdamage1 (= 1:1.1.4-3+b3), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.3-1+b2), libxext6 (= 2:1.3.3-1+b2), libxfixes-dev (= 1:5.0.3-1), libxfixes3 (= 1:5.0.3-1), libxi6 (= 2:1.7.9-1), libxkbcommon-x11-0 (= 0.8.2-1), libxkbcommon0 (= 0.8.2-1), libxml2 (= 2.9.4+dfsg1-7+b3), libxrender1 (= 1:0.9.10-1), libxshmfence-dev (= 1.3-1), libxshmfence1 (= 1.3-1), libxslt1.1 (= 1.1.32-2), libxxf86vm-dev (= 1:1.1.4-1+b2), libxxf86vm1 (= 1:1.1.4-1+b2), linux-libc-dev (= 4.19.28-2), login (= 1:4.5-1.1), lsb-base (= 10.2019031300), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), mesa-common-dev (= 18.3.4-2), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), patch (= 2.7.6-3), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), qdoc-qt5 (= 5.11.3-4), qt5-assistant (= 5.11.3-4), qt5-qmake (= 5.11.3+dfsg1-1), qt5-qmake-bin (= 5.11.3+dfsg1-1), qtbase5-dev (= 5.11.3+dfsg1-1), qtbase5-dev-tools (= 5.11.3+dfsg1-1), qtchooser (= 66-1), qttools5-dev-tools (= 5.11.3-4), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-5), ucf (= 3.0038+nmu1), util-linux (= 2.33.1-0.1), x11-common (= 1:7.7+19), x11proto-core-dev (= 2018.4-4), x11proto-damage-dev (= 1:2018.4-4), x11proto-dev (= 2018.4-4), x11proto-fixes-dev (= 1:2018.4-4), x11proto-xext-dev (= 2018.4-4), x11proto-xf86vidmode-dev (= 2018.4-4), xkb-data (= 2.26-2), xorg-sgml-doctools (= 1:1.11-1), xtrans-dev (= 1.3.5-1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1551035080" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalx-dbgsym_2.1+lgpl-8_arm64.deb ------------------------------------ new Debian package, version 2.0. size 12777928 bytes: control archive=540 bytes. 382 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: clustalx-dbgsym Source: clustalx Version: 2.1+lgpl-8 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 12748 Depends: clustalx (= 2.1+lgpl-8) Section: debug Priority: optional Description: debug symbols for clustalx Build-Ids: 0614dc0fe428e9516f2dd22ba69981d597a72912 drwxr-xr-x root/root 0 2019-02-24 19:04 ./ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/debug/.build-id/06/ -rw-r--r-- root/root 13043368 2019-02-24 19:04 ./usr/lib/debug/.build-id/06/14dc0fe428e9516f2dd22ba69981d597a72912.debug drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-02-24 19:04 ./usr/share/doc/clustalx-dbgsym -> clustalx clustalx_2.1+lgpl-8_arm64.deb ----------------------------- new Debian package, version 2.0. size 391048 bytes: control archive=1440 bytes. 1527 bytes, 27 lines control 874 bytes, 13 lines md5sums Package: clustalx Version: 2.1+lgpl-8 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1265 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libgl1, libqt5core5a (>= 5.7.0), libqt5gui5 (>= 5.2.0), libqt5widgets5 (>= 5.0.2), libqt5xml5 (>= 5.0.2), libstdc++6 (>= 5.2) Suggests: clustalw, texlive-latex-extra, boxshade Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. drwxr-xr-x root/root 0 2019-02-24 19:04 ./ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/bin/ -rwxr-xr-x root/root 1184512 2019-02-24 19:04 ./usr/bin/clustalx drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/mime/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/mime/packages/ -rw-r--r-- root/root 114 2019-02-24 19:04 ./usr/lib/mime/packages/clustalx drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/applications/ -rw-r--r-- root/root 876 2019-02-24 19:04 ./usr/share/applications/clustalx.desktop drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/clustalx/ -rw-r--r-- root/root 69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp -rw-r--r-- root/root 847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml -rw-r--r-- root/root 1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml -rw-r--r-- root/root 5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/clustalx/ -rw-r--r-- root/root 410 2019-02-24 19:04 ./usr/share/doc/clustalx/README.Debian -rw-r--r-- root/root 4511 2019-02-24 19:04 ./usr/share/doc/clustalx/changelog.Debian.gz -rw-r--r-- root/root 3440 2019-02-24 19:04 ./usr/share/doc/clustalx/changelog.gz -rw-r--r-- root/root 1826 2019-02-24 19:04 ./usr/share/doc/clustalx/copyright drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/man/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/man/man1/ -rw-r--r-- root/root 797 2019-02-24 19:04 ./usr/share/man/man1/clustalx.1.gz drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/mime/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/mime/packages/ -rw-r--r-- root/root 513 2019-02-24 19:04 ./usr/share/mime/packages/clustalx.xml +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 183352 Build-Time: 295 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 44 Job: clustalx_2.1+lgpl-8 Lintian: pass Machine Architecture: amd64 Package: clustalx Package-Time: 351 Source-Version: 2.1+lgpl-8 Space: 183352 Status: successful Version: 2.1+lgpl-8 -------------------------------------------------------------------------------- Finished at 2019-04-01T03:44:32Z Build needed 00:05:51, 183352k disk space